Citrus Sinensis ID: 017839
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 365 | ||||||
| 224116684 | 376 | predicted protein [Populus trichocarpa] | 0.991 | 0.962 | 0.722 | 1e-153 | |
| 449516986 | 373 | PREDICTED: uncharacterized LOC101208739 | 0.983 | 0.962 | 0.701 | 1e-150 | |
| 449459342 | 373 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.962 | 0.698 | 1e-149 | |
| 224114361 | 375 | predicted protein [Populus trichocarpa] | 0.989 | 0.962 | 0.700 | 1e-147 | |
| 22329857 | 378 | putative methyltransferase domain-contai | 0.972 | 0.939 | 0.651 | 1e-141 | |
| 297845900 | 373 | hypothetical protein ARALYDRAFT_473184 [ | 0.961 | 0.941 | 0.671 | 1e-140 | |
| 255557419 | 377 | conserved hypothetical protein [Ricinus | 0.991 | 0.960 | 0.697 | 1e-138 | |
| 356512155 | 374 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.959 | 0.673 | 1e-131 | |
| 147790992 | 366 | hypothetical protein VITISV_009253 [Viti | 0.969 | 0.967 | 0.633 | 1e-122 | |
| 225463406 | 366 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.967 | 0.633 | 1e-122 |
| >gi|224116684|ref|XP_002331852.1| predicted protein [Populus trichocarpa] gi|222875370|gb|EEF12501.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 274/379 (72%), Positives = 310/379 (81%), Gaps = 17/379 (4%)
Query: 1 MGFSMGLNLVLLLAMVATNILSLYHLSSTTYQSQTKPPTQQQVPDYLIHQLQTIRATINH 60
MGFSMGLNLVLLLAMVATNILSLYHLSST KPPTQQ VPD+L+HQL TIRATI+H
Sbjct: 1 MGFSMGLNLVLLLAMVATNILSLYHLSSTL--QSPKPPTQQPVPDHLLHQLNTIRATISH 58
Query: 61 LTRHHPSTTIDTNSKTTTTIPQDLLLYSRLSPIASSCHNHPDLLHNYMSYTPFTLCPHDT 120
LTRH P + + + T +IPQDLLLYS LSPIASSCHNHPDLLH YM+YTP++LCP D+
Sbjct: 59 LTRHQPPSITPSPTSTKPSIPQDLLLYSHLSPIASSCHNHPDLLHKYMAYTPYSLCPLDS 118
Query: 121 DL-QETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKY-NCKSFSCL 178
DL E+LILHGCHPLPRRRCFS+TP KP SSL NPFPSS DSNVIW+KY +CKSFSCL
Sbjct: 119 DLLAESLILHGCHPLPRRRCFSKTPPKPPSSLPRNPFPSSFLDSNVIWNKYPSCKSFSCL 178
Query: 179 VQKSPNLGFDPASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAAR 238
+KSP LGFD +E S F+ +K+ELDLPV Q L +AK+ANS IRLGID+GGATG+FAAR
Sbjct: 179 AKKSPGLGFDLNTE-ISKFMTYKTELDLPVPQLLQVAKSANSAIRLGIDIGGATGTFAAR 237
Query: 239 MKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298
MK YN+T++TTTMN P +E A+RGLVPLHVPLQQRLP+FDGV+D+VRC HAVNRWIP
Sbjct: 238 MKQYNVTVVTTTMNFNVPNNEVVAMRGLVPLHVPLQQRLPVFDGVVDLVRCAHAVNRWIP 297
Query: 299 VIMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWATANKPNS- 348
+ MMEFLFYDVDRVLRGGG K DL+ V+GPLIGKLGYKKVKWA NK +S
Sbjct: 298 LTMMEFLFYDVDRVLRGGGYLWFDHFFCKRMDLDKVFGPLIGKLGYKKVKWAVGNKTDSS 357
Query: 349 --KNGEVYLTALLQKPVSK 365
KN EVYLTALLQKPVSK
Sbjct: 358 GLKNEEVYLTALLQKPVSK 376
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516986|ref|XP_004165527.1| PREDICTED: uncharacterized LOC101208739 isoform 1 [Cucumis sativus] gi|449516988|ref|XP_004165528.1| PREDICTED: uncharacterized LOC101208739 isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 263/375 (70%), Positives = 306/375 (81%), Gaps = 16/375 (4%)
Query: 1 MGFSMGLNLVLLLAMVATNILSLYHLSSTTYQSQTKPPTQQQVPDYLIHQLQTIRATINH 60
MGF+MGLNL+LL+AMVATNILSLYHLSST TK P Q VPD+LI QLQTIRATINH
Sbjct: 1 MGFTMGLNLLLLVAMVATNILSLYHLSSTL--QSTKSPVSQPVPDHLIRQLQTIRATINH 58
Query: 61 LTRHHPSTTIDTNSKTTTTIPQDLLLYSRLSPIASSCHNHPDLLHNYMSYTPFTLCPHDT 120
LTR HP T + SKT +IP DL+LYS+ SPIASSCH +P+LLH +M+YTPF+ CP D+
Sbjct: 59 LTRLHP-TAAASASKTKLSIPSDLVLYSQFSPIASSCHTNPELLHKFMNYTPFSSCPSDS 117
Query: 121 DLQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKSFSCLVQ 180
DL E LIL GCHPLPRRRCF++TP KPSSSL NPF SSLP+SN+IW KY+CKS CL +
Sbjct: 118 DLAEALILRGCHPLPRRRCFAKTPQKPSSSLPQNPFASSLPESNIIWGKYSCKSLGCLNR 177
Query: 181 KSPNLGFDPASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMK 240
+PNLGFDP+ E + F+ FK+ELDLP+ Q L +AKAANSV+RLG+D+GG T +FAARMK
Sbjct: 178 LNPNLGFDPSHE-ITKFMTFKTELDLPIPQLLQIAKAANSVLRLGLDIGGGTATFAARMK 236
Query: 241 LYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300
LYN+T++TTTMNLGAPY+E AALRGLVPLHVPLQQRLP+FDGV+D+VRCGHAVNRWIP
Sbjct: 237 LYNVTMVTTTMNLGAPYNEVAALRGLVPLHVPLQQRLPIFDGVMDLVRCGHAVNRWIPAK 296
Query: 301 MMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWATANKPNS--- 348
MEFLFYD+DRVLR GG K DL+ +Y PLI KLGY+KVKWATANK +S
Sbjct: 297 SMEFLFYDLDRVLRVGGYLWFDHFFSKGVDLDKLYSPLITKLGYRKVKWATANKTDSGGL 356
Query: 349 KNGEVYLTALLQKPV 363
KNGEVYLTALLQKPV
Sbjct: 357 KNGEVYLTALLQKPV 371
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459342|ref|XP_004147405.1| PREDICTED: uncharacterized protein LOC101208739 isoform 1 [Cucumis sativus] gi|449459344|ref|XP_004147406.1| PREDICTED: uncharacterized protein LOC101208739 isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/375 (69%), Positives = 306/375 (81%), Gaps = 16/375 (4%)
Query: 1 MGFSMGLNLVLLLAMVATNILSLYHLSSTTYQSQTKPPTQQQVPDYLIHQLQTIRATINH 60
MGF+MGLNL+LL+AMVATNILSLYHLSST TK P Q VPD+LI QLQTIRATINH
Sbjct: 1 MGFTMGLNLLLLVAMVATNILSLYHLSSTL--QSTKSPVSQPVPDHLIRQLQTIRATINH 58
Query: 61 LTRHHPSTTIDTNSKTTTTIPQDLLLYSRLSPIASSCHNHPDLLHNYMSYTPFTLCPHDT 120
LTR HP T + SKT +IP DL+LYS+ SPIASSCH +P+LLH +M+YTPF+ CP D+
Sbjct: 59 LTRLHP-TAAASASKTKLSIPSDLVLYSQFSPIASSCHTNPELLHKFMNYTPFSSCPSDS 117
Query: 121 DLQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKSFSCLVQ 180
DL E LIL GCHPLPRRRCF++TP KPSSSL NPF SSLP+SN+IW KY+CK CL +
Sbjct: 118 DLAEALILRGCHPLPRRRCFAKTPQKPSSSLPQNPFASSLPESNIIWEKYSCKGLGCLNR 177
Query: 181 KSPNLGFDPASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMK 240
+PNLGFDP+ E + F+ FK+ELDLP+ Q L +AKAANSV+RLG+D+GG T +FAARMK
Sbjct: 178 LNPNLGFDPSHE-ITKFMTFKTELDLPIPQLLQIAKAANSVLRLGLDIGGGTATFAARMK 236
Query: 241 LYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300
LYN+T++TTTMNLGAPY+E AALRGLVPLHVPLQQRLP+FDGV+D+VRCGHAVNRWIPV
Sbjct: 237 LYNVTMVTTTMNLGAPYNEVAALRGLVPLHVPLQQRLPIFDGVMDLVRCGHAVNRWIPVK 296
Query: 301 MMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWATANKPNS--- 348
MEFLFYD+DRVLR GG K DL+ +Y PLI KLGY+KVKWATA+K +S
Sbjct: 297 SMEFLFYDLDRVLRVGGYLWFDHFFSKGVDLDKLYSPLITKLGYRKVKWATASKTDSGGL 356
Query: 349 KNGEVYLTALLQKPV 363
KNGEVYLTALLQKPV
Sbjct: 357 KNGEVYLTALLQKPV 371
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114361|ref|XP_002316738.1| predicted protein [Populus trichocarpa] gi|222859803|gb|EEE97350.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/377 (70%), Positives = 309/377 (81%), Gaps = 16/377 (4%)
Query: 1 MGFSMGLNLVLLLAMVATNILSLYHLSSTTYQSQTKPPTQQQVPDYLIHQLQTIRATINH 60
MGF+MGLNLVL+LAMVATNILSLYHLSS QS P QQ VPD+L+HQL TIRATI+H
Sbjct: 1 MGFTMGLNLVLVLAMVATNILSLYHLSSRV-QSPKPPSDQQPVPDHLLHQLNTIRATISH 59
Query: 61 LTRHHPSTTIDTNSKTTTTIPQDLLLYSRLSPIASSCHNHPDLLHNYMSYTPFTLCPHDT 120
LTRH P +T + + T ++PQDLLLYS LSPIASSCHNHPDLLH YMSY+P++LCP D+
Sbjct: 60 LTRHQPPSTTPSPTTTKPSVPQDLLLYSHLSPIASSCHNHPDLLHKYMSYSPYSLCPLDS 119
Query: 121 DL-QETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKY-NCKSFSCL 178
DL E+LILHGCHPLPRRRCFS+TP KP SSL NPFPSS DSNVIW+KY C+SFSCL
Sbjct: 120 DLLAESLILHGCHPLPRRRCFSKTPPKPPSSLPRNPFPSSFLDSNVIWNKYPTCRSFSCL 179
Query: 179 VQKSPNLGFDPASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAAR 238
+++P+LGFD +E S F+ +K+ELDLP+ Q L +AK+A+SVIRLGID+GGATG+FAAR
Sbjct: 180 AKQNPSLGFDLNNE-ISKFMTYKTELDLPIPQLLQVAKSADSVIRLGIDIGGATGTFAAR 238
Query: 239 MKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298
MK YN+T++TTTMN P +E A+RGLVPLHVPLQ RLP+FDGV+D+VRCGHAVNRW+P
Sbjct: 239 MKQYNVTVVTTTMNFNVPNNEVVAMRGLVPLHVPLQHRLPVFDGVVDLVRCGHAVNRWMP 298
Query: 299 VIMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWATANKPNS- 348
+ MMEFLFYDVDRVLRGGG K DL+ V+GPLIGKLGYKKVKWA NK +S
Sbjct: 299 LTMMEFLFYDVDRVLRGGGYLWFDHFFSKRVDLDKVFGPLIGKLGYKKVKWAVGNKTDSS 358
Query: 349 --KNGEVYLTALLQKPV 363
KNGEVYLTALLQKPV
Sbjct: 359 GLKNGEVYLTALLQKPV 375
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329857|ref|NP_174272.2| putative methyltransferase domain-containing protein [Arabidopsis thaliana] gi|186479042|ref|NP_001117383.1| putative methyltransferase domain-containing protein [Arabidopsis thaliana] gi|20260610|gb|AAM13203.1| unknown protein [Arabidopsis thaliana] gi|30725596|gb|AAP37820.1| At1g29790 [Arabidopsis thaliana] gi|332193008|gb|AEE31129.1| putative methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332193009|gb|AEE31130.1| putative methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 251/385 (65%), Positives = 296/385 (76%), Gaps = 30/385 (7%)
Query: 2 GFSMGLNLVLLLAMVATNILSLYHLSSTT--YQSQTKPPTQQ--QVPDYLIHQLQTIRAT 57
GF+M LNL+LL+AMVATNILSLYHLSSTT +QS K VPD+L+ QL TIRA
Sbjct: 3 GFTMSLNLLLLVAMVATNILSLYHLSSTTNFFQSTVKSSQSSVPTVPDHLLRQLHTIRAA 62
Query: 58 INHLTRHHPSTTIDTNSKTTTTI-------PQDLLLYSRLSPIASSCHNHPDLLHNYMSY 110
INHLT H P + T++ P++LL+YS+LSPIAS+CHN+PDLLH YM+Y
Sbjct: 63 INHLTTHQPDKSTSTSTSRAAVSSSSSSTAPKELLIYSKLSPIASACHNYPDLLHEYMNY 122
Query: 111 TPFTLCPHDTDLQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKY 170
TPF+LCP DTDL E LIL GCHPLPRRRCFSRTP PS S P+SNV+WS Y
Sbjct: 123 TPFSLCPSDTDLVEKLILRGCHPLPRRRCFSRTPRNPSDSK---------PESNVLWSYY 173
Query: 171 NCKSFSCLVQKSPNLGFDPASEKSSS-FLAFKSELDLPVTQFLDLAKAANSVIRLGIDVG 229
+CKSF CL+ K +LGFD + EKS S F A+KSELDLP++Q L +AK+ANSV+RLGIDVG
Sbjct: 174 SCKSFDCLITKFSDLGFDLSLEKSKSQFSAYKSELDLPISQLLQIAKSANSVLRLGIDVG 233
Query: 230 GATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRC 289
G TGSFAA MK N+T+LTTTMN APYSEA A+RGLVPLHVPLQQRLP+FDGV+D+VRC
Sbjct: 234 GGTGSFAAAMKARNVTVLTTTMNFNAPYSEAVAMRGLVPLHVPLQQRLPVFDGVVDLVRC 293
Query: 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKW 340
G AVNRWIPV +MEF F+D+DR+LRGGG K DLENVY P+IGKLGYKKVKW
Sbjct: 294 GRAVNRWIPVTVMEFFFFDLDRILRGGGYLWLDRFFSKKVDLENVYAPMIGKLGYKKVKW 353
Query: 341 ATANKPNSKNGEVYLTALLQKPVSK 365
A ANK +SK+GEV+LTALLQKPV++
Sbjct: 354 AVANKADSKHGEVFLTALLQKPVAR 378
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845900|ref|XP_002890831.1| hypothetical protein ARALYDRAFT_473184 [Arabidopsis lyrata subsp. lyrata] gi|297336673|gb|EFH67090.1| hypothetical protein ARALYDRAFT_473184 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/383 (67%), Positives = 299/383 (78%), Gaps = 32/383 (8%)
Query: 5 MGLNLVLLLAMVATNILSLYHLSSTT--YQSQTKPPTQQQVP---DYLIHQLQTIRATIN 59
M LNL+LL+AMVATNILSLYHLSSTT +QS K TQ VP D+L+ QL TIRA IN
Sbjct: 1 MSLNLLLLVAMVATNILSLYHLSSTTNFFQSTVKS-TQSSVPTVPDHLLRQLHTIRAAIN 59
Query: 60 HLTRHHP--STTIDTNSKTTT-----TIPQDLLLYSRLSPIASSCHNHPDLLHNYMSYTP 112
HLT H P ST+I T+ + T P++LL+YS+LSPIAS+CHN+PDLLH YM+YTP
Sbjct: 60 HLTTHQPDKSTSILTSRAAVSSSSSSTPPKELLIYSKLSPIASACHNYPDLLHEYMNYTP 119
Query: 113 FTLCPHDTDLQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNC 172
F+LCP DTDL E LIL GCHPLPRRRCFSRTP PS P+SNVIWS Y+C
Sbjct: 120 FSLCPSDTDLVEKLILRGCHPLPRRRCFSRTPRNPSDWK---------PESNVIWSYYSC 170
Query: 173 KSFSCLVQKSPNLGFDPASEKSSS-FLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGA 231
KSF CL+ K P+LGFD + EKS S F A+KSELDLP++Q L +AK+ANSV+RLGIDVGG
Sbjct: 171 KSFDCLITKFPDLGFDLSLEKSKSQFSAYKSELDLPISQLLQIAKSANSVLRLGIDVGGG 230
Query: 232 TGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGH 291
TGSFAA MK NIT+LTTTMN APYSEA A+RGLVPLHVPLQQRLP+FDGV+D+VRCG
Sbjct: 231 TGSFAAAMKARNITVLTTTMNFNAPYSEAVAMRGLVPLHVPLQQRLPVFDGVVDLVRCGR 290
Query: 292 AVNRWIPVIMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWAT 342
AVNRWIPV +MEF F+D+DR+LRGGG K DLENVY P+IGKLGYKKVKWA
Sbjct: 291 AVNRWIPVTVMEFFFFDLDRILRGGGYLWLDRFFSKKVDLENVYAPMIGKLGYKKVKWAV 350
Query: 343 ANKPNSKNGEVYLTALLQKPVSK 365
ANK +SK+GEV+LTALLQKPV++
Sbjct: 351 ANKVDSKHGEVFLTALLQKPVAR 373
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557419|ref|XP_002519740.1| conserved hypothetical protein [Ricinus communis] gi|223541157|gb|EEF42713.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/380 (69%), Positives = 312/380 (82%), Gaps = 18/380 (4%)
Query: 1 MGFSMGLNLVLLLAMVATNILSLYHLSS-TTYQSQTKPPTQQQVPDYLIHQLQTIRATIN 59
MGF+MGLNL+LLLAMVATNILSLYHL+S T + P QVPD+L+HQLQTIRATIN
Sbjct: 1 MGFTMGLNLLLLLAMVATNILSLYHLTSPTLQSPKPPQPPLLQVPDHLLHQLQTIRATIN 60
Query: 60 HLTRHHPSTTIDTNSKTTTTIPQDLLLYSRLSPIASSCHNHPDLLHNYMSYTPFTLCPHD 119
HLTRH P TT ++ T TTIP DLLLYS+LSPIASSCHNHPDLLH YM+YTPF+LCP D
Sbjct: 61 HLTRHQPPTT--SDPTTATTIPPDLLLYSKLSPIASSCHNHPDLLHKYMTYTPFSLCPLD 118
Query: 120 TD-LQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKY-NCKSFSC 177
+D L E+LIL GCHPLPRRRCFS+TPSKP SSL NPFPSS DSNV+W KY +C+SFSC
Sbjct: 119 SDNLAESLILRGCHPLPRRRCFSKTPSKPPSSLPHNPFPSSFLDSNVLWEKYPSCRSFSC 178
Query: 178 LVQKSPNLGFDPASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAA 237
LV+++ NLGFD +E S F+ +K+ELDLP+ Q L +AK+A+SVIRLG+D+GG TG+FAA
Sbjct: 179 LVKENSNLGFDINTE-ISKFMTYKTELDLPIPQLLQVAKSASSVIRLGVDIGGGTGTFAA 237
Query: 238 RMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297
RMK+YN+T++TTTMN P +E A+RGLVPLHVPLQQRLP+FDGV+D+VRCG AVNRWI
Sbjct: 238 RMKMYNVTVVTTTMNFNVPNNEVVAMRGLVPLHVPLQQRLPMFDGVVDLVRCGRAVNRWI 297
Query: 298 PVIMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWATANKPNS 348
P+ MMEFL +DVDRVLRGGG K +DL+ +YGPLIGKLGYKKVKWA NK +S
Sbjct: 298 PLKMMEFLLFDVDRVLRGGGYLWLDHFFSKRADLDKIYGPLIGKLGYKKVKWAVGNKTDS 357
Query: 349 ---KNGEVYLTALLQKPVSK 365
KNGEVYLTALLQKPVS+
Sbjct: 358 SGIKNGEVYLTALLQKPVSR 377
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512155|ref|XP_003524786.1| PREDICTED: uncharacterized protein LOC100785300 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 256/380 (67%), Positives = 294/380 (77%), Gaps = 21/380 (5%)
Query: 1 MGFS---MGLNLVLLLAMVATNILSLYHLSSTTYQSQTKPPTQQQVPDYLIHQLQTIRAT 57
MGF+ M LNLVLL+AMVATNILSLYHLSST QS P VPD L+HQL TIRAT
Sbjct: 1 MGFTFSTMTLNLVLLMAMVATNILSLYHLSST-LQSPKSPKPPPPVPDQLLHQLHTIRAT 59
Query: 58 INHLTRHHPSTTIDTNSKTTTTIPQDLLLYSRLSPIASSCHNHPDLLHNYMSYTPFTLCP 117
I+HLTR + N +TIP DLLLYS LSPIASSCHNHP+LLH YM+Y PF+LCP
Sbjct: 60 ISHLTRLQNTH----NPAQKSTIPSDLLLYSHLSPIASSCHNHPELLHKYMTYIPFSLCP 115
Query: 118 HDTDLQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKSFSC 177
D+DL E+LIL GCHPLPRRRCFS+TP KP SL NPFPSSLPD+ VIW Y+CKSF C
Sbjct: 116 SDSDLAESLILRGCHPLPRRRCFSKTPQKPPVSLPENPFPSSLPDNAVIWDHYSCKSFDC 175
Query: 178 LVQKSPNLGFDPASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAA 237
L +++PNLGF+P S S F ++K++LDLP+ Q L +A AA S +RLG+DVGG TGSFAA
Sbjct: 176 LNKQNPNLGFEP-SRDISRFNSYKTDLDLPIQQLLQIAAAAKSALRLGLDVGGGTGSFAA 234
Query: 238 RMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297
M+L N+T++TTTMN+ P SEA ALRGLVPLHVPLQQRLPLFDGV+D+VRCG AVNRWI
Sbjct: 235 SMRLRNVTVVTTTMNVAVPNSEAVALRGLVPLHVPLQQRLPLFDGVVDLVRCGRAVNRWI 294
Query: 298 PVIMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWATANKPNS 348
P+ +MEFL DVDRVLRGGG K DLE VY PLIGKLGYKKVKWAT NK ++
Sbjct: 295 PLTVMEFLLLDVDRVLRGGGYLWVDHFFSKVVDLEKVYAPLIGKLGYKKVKWATGNKTDA 354
Query: 349 ---KNGEVYLTALLQKPVSK 365
KNGEVYLTALLQKPVS+
Sbjct: 355 SGVKNGEVYLTALLQKPVSR 374
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147790992|emb|CAN63784.1| hypothetical protein VITISV_009253 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/377 (63%), Positives = 290/377 (76%), Gaps = 23/377 (6%)
Query: 1 MGFSMGLNLVLLLAMVATNILSLYHLSSTTYQSQTKPPTQQQVPDYLIHQLQTIRATINH 60
MG +MGLNL+LL+AMVATNILSLYHLSST QS+ PP D+L HQL TIRAT+ H
Sbjct: 1 MGLTMGLNLLLLVAMVATNILSLYHLSSTI-QSKPTPPPAPVP-DHLRHQLNTIRATLTH 58
Query: 61 LTRHHPSTTIDTNSKTTTTIPQDLLLYSRLSPIASSCHNHPDLLHNYMSYTPFTLCPHDT 120
LTR +++ +S T + DLLLY+ LSP+ASSC +HPDLLH YM+YTPF+LCP D+
Sbjct: 59 LTRLRSTSSSSASSATPS----DLLLYTHLSPMASSCRDHPDLLHTYMTYTPFSLCPDDS 114
Query: 121 DLQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKSFSCLVQ 180
L E+LIL GCHPLPRRRCF+RTPSK SSL ++PF S LPDS V+W+KY+CKSFSC
Sbjct: 115 QLAESLILRGCHPLPRRRCFARTPSKLPSSLPADPF-SPLPDSAVLWTKYSCKSFSCF-- 171
Query: 181 KSPNLGFDPASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMK 240
LGF+ E +S F + S LDL + Q L +AK A+SVIR+G+D+GG TG+FAA+MK
Sbjct: 172 -DGGLGFNMKLE-ASRFTSSXSNLDLTIPQLLQIAKDASSVIRIGLDIGGGTGTFAAKMK 229
Query: 241 LYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300
YN+T+++TTM+ GAPY+EA ALRGLVPLH PLQQRLP+FDGV+D+VRCG AVNRWIP +
Sbjct: 230 PYNVTVVSTTMSQGAPYNEATALRGLVPLHAPLQQRLPVFDGVVDLVRCGRAVNRWIPTV 289
Query: 301 MMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWATANKPNS--- 348
MEF FYDVDRVLRGGG K +DL+ +Y P+IGKLGYKKVKW ANK +S
Sbjct: 290 AMEFFFYDVDRVLRGGGYLWLDHFFSKGADLQKLYAPVIGKLGYKKVKWTMANKTDSSGV 349
Query: 349 KNGEVYLTALLQKPVSK 365
KNGEVYLTALLQKPVS+
Sbjct: 350 KNGEVYLTALLQKPVSR 366
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463406|ref|XP_002273992.1| PREDICTED: uncharacterized protein LOC100250442 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/377 (63%), Positives = 290/377 (76%), Gaps = 23/377 (6%)
Query: 1 MGFSMGLNLVLLLAMVATNILSLYHLSSTTYQSQTKPPTQQQVPDYLIHQLQTIRATINH 60
MG +MGLNL+LL+AMVATNILSLYHLSST QS+ PP D+L HQL TIRAT+ H
Sbjct: 1 MGLTMGLNLLLLVAMVATNILSLYHLSSTI-QSKPTPPPAPVP-DHLRHQLNTIRATLTH 58
Query: 61 LTRHHPSTTIDTNSKTTTTIPQDLLLYSRLSPIASSCHNHPDLLHNYMSYTPFTLCPHDT 120
LTR +++ +S T + DLLLY+ LSP+ASSC +HPDLLH YM+YTPF+LCP D+
Sbjct: 59 LTRLRSTSSSSASSATPS----DLLLYTHLSPMASSCRDHPDLLHTYMTYTPFSLCPDDS 114
Query: 121 DLQETLILHGCHPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKSFSCLVQ 180
L E+LIL GCHPLPRRRCF+RTPSK SSL ++PF S LPDS V+W+KY+CKSFSC
Sbjct: 115 QLAESLILRGCHPLPRRRCFARTPSKLPSSLPADPF-SPLPDSAVLWTKYSCKSFSCF-- 171
Query: 181 KSPNLGFDPASEKSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMK 240
LGF+ E +S F + S LDL + Q L +AK A+SVIR+G+D+GG TG+FAA+MK
Sbjct: 172 -DGGLGFNMKLE-ASRFTSSGSNLDLTIPQLLQIAKDASSVIRIGLDIGGGTGTFAAKMK 229
Query: 241 LYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300
YN+T+++TTM+ GAPY+EA ALRGLVPLH PLQQRLP+FDGV+D+VRCG AVNRWIP +
Sbjct: 230 PYNVTVVSTTMSQGAPYNEATALRGLVPLHAPLQQRLPVFDGVVDLVRCGRAVNRWIPTV 289
Query: 301 MMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWATANKPNS--- 348
MEF FYDVDRVLRGGG K +DL+ +Y P+IGKLGYKKVKW ANK +S
Sbjct: 290 AMEFFFYDVDRVLRGGGYLWLDHFFSKGADLQKLYAPVIGKLGYKKVKWTMANKTDSSGV 349
Query: 349 KNGEVYLTALLQKPVSK 365
KNGEVYLTALLQKPVS+
Sbjct: 350 KNGEVYLTALLQKPVSR 366
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 365 | ||||||
| TAIR|locus:2019312 | 378 | AT1G29790 [Arabidopsis thalian | 0.972 | 0.939 | 0.625 | 3.1e-122 | |
| TAIR|locus:2079812 | 463 | AT3G05390 [Arabidopsis thalian | 0.690 | 0.544 | 0.398 | 9.8e-48 | |
| TAIR|locus:2164491 | 414 | AT5G40830 [Arabidopsis thalian | 0.728 | 0.642 | 0.365 | 2e-47 | |
| TAIR|locus:2086543 | 410 | AT3G27230 [Arabidopsis thalian | 0.728 | 0.648 | 0.375 | 3.7e-46 | |
| TAIR|locus:2125028 | 659 | AT4G01240 [Arabidopsis thalian | 0.736 | 0.408 | 0.356 | 1.7e-38 |
| TAIR|locus:2019312 AT1G29790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
Identities = 241/385 (62%), Positives = 282/385 (73%)
Query: 2 GFSMGLNLVLLLAMVATNILSLYHLSSTT--YQSQTKPPTQQ--QVPDYLIHQLQTIRAT 57
GF+M LNL+LL+AMVATNILSLYHLSSTT +QS K VPD+L+ QL TIRA
Sbjct: 3 GFTMSLNLLLLVAMVATNILSLYHLSSTTNFFQSTVKSSQSSVPTVPDHLLRQLHTIRAA 62
Query: 58 INHLTRHHPSXXXXXXXX-------XXXXIPQDLLLYSRLSPIASSCHNHPDLLHNYMSY 110
INHLT H P P++LL+YS+LSPIAS+CHN+PDLLH YM+Y
Sbjct: 63 INHLTTHQPDKSTSTSTSRAAVSSSSSSTAPKELLIYSKLSPIASACHNYPDLLHEYMNY 122
Query: 111 TPFTLCPHDTDLQETLILHGCHPLPRRRCFXXXXXXXXXXXXXXXXXXXXXXXNVIWSKY 170
TPF+LCP DTDL E LIL GCHPLPRRRCF NV+WS Y
Sbjct: 123 TPFSLCPSDTDLVEKLILRGCHPLPRRRCFSRTPRNPSDSKPES---------NVLWSYY 173
Query: 171 NCKSFSCLVQKSPNLGFDPASEKSSS-FLAFKSELDLPVTQFLDLAKAANSVIRLGIDVG 229
+CKSF CL+ K +LGFD + EKS S F A+KSELDLP++Q L +AK+ANSV+RLGIDVG
Sbjct: 174 SCKSFDCLITKFSDLGFDLSLEKSKSQFSAYKSELDLPISQLLQIAKSANSVLRLGIDVG 233
Query: 230 GATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRC 289
G TGSFAA MK N+T+LTTTMN APYSEA A+RGLVPLHVPLQQRLP+FDGV+D+VRC
Sbjct: 234 GGTGSFAAAMKARNVTVLTTTMNFNAPYSEAVAMRGLVPLHVPLQQRLPVFDGVVDLVRC 293
Query: 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKW 340
G AVNRWIPV +MEF F+D+DR+LRGGG K DLENVY P+IGKLGYKKVKW
Sbjct: 294 GRAVNRWIPVTVMEFFFFDLDRILRGGGYLWLDRFFSKKVDLENVYAPMIGKLGYKKVKW 353
Query: 341 ATANKPNSKNGEVYLTALLQKPVSK 365
A ANK +SK+GEV+LTALLQKPV++
Sbjct: 354 AVANKADSKHGEVFLTALLQKPVAR 378
|
|
| TAIR|locus:2079812 AT3G05390 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 110/276 (39%), Positives = 153/276 (55%)
Query: 104 LHNYMSYTPFTLCPHDTDLQETLILHGCHPLPRRRCFXXXXXXXXXXXXXXXXXXXX-XX 162
L YM Y C D +L + L+L+GC PLPRRRC
Sbjct: 191 LEKYMDYDVGAYCDDDWNLAQKLMLNGCDPLPRRRCLTRASMTYQKPYPINESLWKLPDD 250
Query: 163 XNVIWSKYNCKSFSCLVQKSPNLGFDPAS-----EKSSSFLAFKSELDLPVTQFL--DLA 215
NV W Y C++F+CL K+P G+ S EK S L + F+ D+
Sbjct: 251 RNVRWGNYQCRNFACLSSKNPKRGYTKCSGCFEMEKEKDKWVKNSSL---LVDFMIEDVL 307
Query: 216 KAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQ 275
+ S IR+G+D G TG+FAARM+ N+TI+TT +NLGAP++E ALRGL+PL++ L Q
Sbjct: 308 RVKPSEIRIGLDYGVGTGTFAARMREKNVTIVTTALNLGAPFNEMIALRGLIPLYISLNQ 367
Query: 276 RLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG---------KASDLENVY 326
RLP FD +D++ ++ WI +++M+F+ YD DRVLR GG K DL++ Y
Sbjct: 368 RLPFFDNTMDMIHTTGLMDGWIDLLLMDFVLYDWDRVLRPGGLLWIDRFFCKKKDLDD-Y 426
Query: 327 GPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKP 362
+ + YKK KWA + P SK+ EVYL+ALL+KP
Sbjct: 427 MYMFLQFRYKKHKWAIS--PKSKD-EVYLSALLEKP 459
|
|
| TAIR|locus:2164491 AT5G40830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 106/290 (36%), Positives = 150/290 (51%)
Query: 90 LSPIASSCHNHPDLLHNYMSYTPFTLCPHDTDLQETLILHGCHPLPRRRCFXXXXXXXXX 149
++ + SC DLL YMSY F CP D L + LIL C PLPRRRC
Sbjct: 129 VASVGHSCEMSLDLLSQYMSYNVFEKCPDDWSLAQKLILRACEPLPRRRCLAKTVHKPGL 188
Query: 150 XXXXXXXXXXXXXXNVIWSKYNCKSFSCLVQKSPN---LG-FDPA-SEKSSSFLAFKSEL 204
+V WS CKSF CL K + +G FD A S + F+ +
Sbjct: 189 ALFPDSLWRPVGNSSVNWSGLGCKSFECLKGKKLSRDCVGCFDLATSHEKDRFVKVNGKT 248
Query: 205 DLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR 264
D + LDL + IR+G D+ +G+FAARM N+ I++ T+N+ AP+SE A R
Sbjct: 249 DFLIDDVLDLG---DGKIRIGFDISSGSGTFAARMAEKNVNIISNTLNIDAPFSEFIAAR 305
Query: 265 GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP--VIMMEFLFYDVDRVLRGGGKASDL 322
G+ PL + L QRLP +D V D++ + ++ + +EFL +D+DR+L+ GG L
Sbjct: 306 GIFPLFMSLDQRLPFYDNVFDLIHASNGLDLAVSNKPEKLEFLMFDLDRILKPGGLFW-L 364
Query: 323 ENVY-GP---------LIGKLGYKKVKWATANKPNSKNGEVYLTALLQKP 362
+N Y G LI + GYKK+KW K ++ EV+L+A+LQKP
Sbjct: 365 DNFYCGNDEKKRVLTRLIERFGYKKLKWVVGEKTDA---EVFLSAVLQKP 411
|
|
| TAIR|locus:2086543 AT3G27230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
Identities = 108/288 (37%), Positives = 144/288 (50%)
Query: 90 LSPIASSCHNHPDLLHNYMSYTPFTLCPHDTDLQETLILHGCHPLPRRRCFXXXXXXXXX 149
+S + SC DLL YMSY F CP D L + LIL C PLPRRRC
Sbjct: 129 VSSVGHSCGKSTDLLSQYMSYKVFDRCPDDWSLGQKLILRACEPLPRRRCLAKTVQKQDL 188
Query: 150 XXXXXXXXXXXXXXNVIWSKYNCKSFSCLVQKSPN---LG-FDPASEKSSSFLAFKSELD 205
+V WS CKSF CL K + +G FD EK F+ K + D
Sbjct: 189 SKSPDSLWRSVSNKSVNWSGLGCKSFDCLKGKKLSKECVGCFDLGVEKDR-FVKVKGKND 247
Query: 206 LPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG 265
+ L L IR+G D+ G +G+FAARM N+T++T T+N GAP+SE A RG
Sbjct: 248 FLIDDVLGLGSGK---IRIGFDISGGSGTFAARMAEKNVTVITNTLNNGAPFSEFIAARG 304
Query: 266 LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGGKASDLENV 325
L PL + L R P D V D++ ++ +EFL +D+DRVL+ G L+N
Sbjct: 305 LFPLFLSLDHRFPFLDNVFDLIHASSGLDVEGKAEKLEFLMFDLDRVLKPRGLFW-LDNF 363
Query: 326 YGP----------LIGKLGYKKVKWATANKPNSKNGEVYLTALLQKPV 363
Y +I + GYKK+KW K ++ +VYL+A+LQKPV
Sbjct: 364 YCANDEKKKELTRMIERFGYKKLKWVIGEKADA---QVYLSAVLQKPV 408
|
|
| TAIR|locus:2125028 AT4G01240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 1.7e-38, P = 1.7e-38
Identities = 104/292 (35%), Positives = 151/292 (51%)
Query: 93 IASSCHNHPDLLHNYMSYTPFTLCPHDTDLQETLILHGCHPLPRRRCFXXXXXXXXXXXX 152
I +C L YM Y +C D L + L++HGC PLPRRRCF
Sbjct: 364 IGHACFAMKKDLEEYMDYDVGEICNDDWRLAQKLMVHGCDPLPRRRCFSRGPQLYHKPFP 423
Query: 153 XXXXXXXX-XXXNVIWSKYNCKSFSCLVQKSP-NLGFDPASE-------KSSSFLAFKSE 203
NV W +Y CK+F+CL + GF ++ +S +L + E
Sbjct: 424 INESLWKLPDNRNVRWGQYKCKNFACLASNTTARKGFFKCTDCFNLTHHESPRWLN-RGE 482
Query: 204 LDLPVTQFLDLAKAA-----NSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYS 258
+D Q D + A IR+G+D TG+FAARM+ N+TI++ T+NLGAP++
Sbjct: 483 IDPETNQTADFSIAEVLEIKPGEIRIGLDFSIGTGTFAARMREQNVTIVSATINLGAPFN 542
Query: 259 EAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGGK 318
E ALRGLVPL++ + QRLP FD LD++ ++ WI +I+++F+ +D DRVLR GG
Sbjct: 543 EMIALRGLVPLYLTVNQRLPFFDSTLDMIHTTRFLDGWIDLILLDFVLFDWDRVLRPGGL 602
Query: 319 A-SD-----LENV--YGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKP 362
D E+V Y L Y+K KW K + + EV+ +A+L+KP
Sbjct: 603 LWIDGFFCLKEDVSDYMEAFKALRYRKHKWVVVPKKDKDDKEVFFSAVLEKP 654
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 365 330 0.00089 116 3 11 22 0.36 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 611 (65 KB)
Total size of DFA: 228 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.36u 0.13s 23.49t Elapsed: 00:00:01
Total cpu time: 23.36u 0.13s 23.49t Elapsed: 00:00:01
Start: Tue May 21 03:16:56 2013 End: Tue May 21 03:16:57 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 365 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.78 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.77 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.7 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.7 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.58 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.56 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.55 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.53 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.48 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.47 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.45 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.45 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.44 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.44 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.41 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.41 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.4 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.39 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.39 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.33 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.32 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.32 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.3 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.29 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.27 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.25 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.24 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.24 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.24 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.24 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.24 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.23 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.23 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.23 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.22 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.21 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.19 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.18 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.17 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.17 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.14 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.14 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.14 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.14 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.14 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.12 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.12 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.11 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.1 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.09 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.09 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.08 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.05 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.05 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.04 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.02 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.0 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.0 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.99 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.99 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.99 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.97 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.97 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.95 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.94 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.94 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.94 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.92 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.91 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.91 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.88 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.87 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.85 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.84 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.83 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.83 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.81 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.8 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.8 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.78 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.77 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.76 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.75 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.74 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.72 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.72 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.69 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.68 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.67 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.66 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.65 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.65 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.65 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.64 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.64 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.64 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.63 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.62 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.6 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.59 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.58 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.56 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.49 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.48 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.47 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.46 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.46 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.45 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.42 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.41 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.41 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.39 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.39 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.39 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.38 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.36 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.35 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.33 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.29 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.27 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.26 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.24 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.21 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.2 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.2 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.19 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.17 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.14 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.13 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.13 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.08 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.07 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.07 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.05 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.04 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.03 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.02 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.96 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.95 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.94 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.93 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.93 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.92 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.91 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 97.87 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.87 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.83 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.82 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.81 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.75 | |
| PLN02366 | 308 | spermidine synthase | 97.75 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.75 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.74 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 97.73 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.73 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.68 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.68 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.68 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.66 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.66 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.64 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.64 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.62 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.62 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.56 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.49 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.42 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.4 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.37 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.37 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.35 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.34 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.32 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.28 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.26 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.21 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.19 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 96.91 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.91 | |
| PLN02476 | 278 | O-methyltransferase | 96.85 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.85 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.81 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.78 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.75 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 96.74 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.71 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.69 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 96.67 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 96.39 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.38 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 96.35 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 96.28 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.15 | |
| PLN02823 | 336 | spermine synthase | 96.13 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 95.77 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 95.64 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.56 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.53 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.52 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 95.49 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 95.22 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.19 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.18 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 94.92 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 94.5 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 94.45 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 94.44 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 94.38 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.37 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 94.25 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 94.07 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 93.61 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 93.61 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 93.56 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 93.39 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 93.09 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 93.01 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 92.7 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 92.69 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 92.66 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 92.65 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 92.52 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 92.09 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 91.99 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 91.96 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 91.3 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 91.01 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 90.38 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 90.38 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 90.15 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 89.52 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 89.18 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 88.87 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 88.4 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 88.37 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 88.13 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 87.56 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 87.05 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 86.66 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 86.49 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 85.94 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 85.45 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 84.59 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 84.32 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 84.02 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 83.08 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 82.85 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 82.66 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 81.49 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 80.37 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=367.09 Aligned_cols=215 Identities=28% Similarity=0.401 Sum_probs=171.3
Q ss_pred HHhcCCCCC-CCCccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCccccchhcccCCCCCCCccccccCceecccCCc
Q 017839 126 LILHGCHPL-PRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVIWSKYNCKSFSCLVQKSPNLGFDPASEKSSSFLAFKSEL 204 (365)
Q Consensus 126 l~~r~C~pl-prrrCl~~~p~~~p~p~p~s~w~~~p~~~~~~W~~~~~~~~~~l~~~~~~~gf~~~~~e~~~W~~~~g~~ 204 (365)
..+|||||. +|.+||+|+|++|..|+ +| |.++|++|+ .|++|++|++.|..| +|+..+++.|.|++||+
T Consensus 23 ~rERhCP~~~~~~~CLVp~P~gYk~P~---~W---P~SRd~iW~--~Nvph~~L~~~K~~q--nWv~~~gd~~~FPgggt 92 (506)
T PF03141_consen 23 HRERHCPPPEERLRCLVPPPKGYKTPI---PW---PKSRDYIWY--ANVPHTKLAEEKADQ--NWVRVEGDKFRFPGGGT 92 (506)
T ss_pred EeeccCcCCCCCCccccCCCccCCCCC---CC---Ccccceeee--cccCchHHhhhcccc--cceeecCCEEEeCCCCc
Confidence 469999995 45599999999665554 44 455599997 467999999999888 66788999999999988
Q ss_pred cc------hHHHHhhhccc--cCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccC-CChhHHHHHHHcCCCcEEec-cC
Q 017839 205 DL------PVTQFLDLAKA--ANSVIRLGIDVGGATGSFAARMKLYNITILTTTMN-LGAPYSEAAALRGLVPLHVP-LQ 274 (365)
Q Consensus 205 ~f------~I~~vL~~~p~--~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ld-l~~~~~e~a~~Rg~v~~~~g-~a 274 (365)
+| +|+++-++.+. .+|.+|++||||||+|+||++|.++||++++++++ .++.+.|+|++||+.+++.. ..
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s 172 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS 172 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc
Confidence 88 56555555443 44889999999999999999999999999887764 56678899999997555443 37
Q ss_pred CCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC---------C---cchhhh---hHHHHHHhhCCceee
Q 017839 275 QRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG---------K---ASDLEN---VYGPLIGKLGYKKVK 339 (365)
Q Consensus 275 e~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG---------~---~~~l~~---~~~~~l~~~gfk~i~ 339 (365)
++|||++++||+|||++|+.+|.+.+. +.|.|++||||||| . .++..+ ...++.+++||+++
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~v- 249 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKV- 249 (506)
T ss_pred ccccCCccchhhhhcccccccchhccc--ceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999999999999999999997654 79999999999999 1 112222 34456667766665
Q ss_pred EEeecCCCCCCCceEEEEeeecCCC
Q 017839 340 WATANKPNSKNGEVYLTALLQKPVS 364 (365)
Q Consensus 340 w~v~~K~d~~~~~~y~sall~KP~~ 364 (365)
++|.| .||||||.+
T Consensus 250 ---a~~~~--------~aIwqKp~~ 263 (506)
T PF03141_consen 250 ---AEKGD--------TAIWQKPTN 263 (506)
T ss_pred ---eeeCC--------EEEEeccCC
Confidence 55555 799999975
|
; GO: 0008168 methyltransferase activity |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=165.30 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=75.9
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHcCC------CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALRGL------VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~Rg~------v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||||.+|..+++.. ..|++ +|++..|.+.++++-. +.|++++|++|||+|++||+|+++++|++
T Consensus 54 ~vLDva~GTGd~a~~~~k~~g~g~v~~--~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn 131 (238)
T COG2226 54 KVLDVACGTGDMALLLAKSVGTGEVVG--LDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN 131 (238)
T ss_pred EEEEecCCccHHHHHHHHhcCCceEEE--EECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence 35999999999999999873 56665 5666889887776521 67899999999999999999999999998
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+ .+.+|+|++|||||||
T Consensus 132 v~d---~~~aL~E~~RVlKpgG 150 (238)
T COG2226 132 VTD---IDKALKEMYRVLKPGG 150 (238)
T ss_pred CCC---HHHHHHHHHHhhcCCe
Confidence 775 4589999999999999
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-19 Score=180.19 Aligned_cols=223 Identities=19% Similarity=0.238 Sum_probs=160.6
Q ss_pred cCCccchhccChhHHhhccCCCCCCCCC--CChHHHHHHHhcCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 017839 90 LSPIASSCHNHPDLLHNYMSYTPFTLCP--HDTDLQETLILHGC-HPLPRRRCFSRTPSKPSSSLSSNPFPSSLPDSNVI 166 (365)
Q Consensus 90 ~~~~~~~c~~~~~~l~~~m~y~~~~~Cp--~d~~~~~~l~~r~C-~plprrrCl~~~p~~~p~p~p~s~w~~~p~~~~~~ 166 (365)
--|..|+|...++. .+....|. ||++.||+--++.| .|+|.... ......+.+||+.+- + +|.+
T Consensus 259 qKp~~~~Cy~~r~~------~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~~~~~~~WP~RL~-~-~P~r--- 325 (506)
T PF03141_consen 259 QKPTNNSCYQKRKP------GKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIAGGWLPKWPERLN-A-VPPR--- 325 (506)
T ss_pred eccCCchhhhhccC------CCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--cccccCCCCChhhhc-c-Cchh---
Confidence 45778899876543 45668999 89999999999988 66665422 111256788999984 4 4433
Q ss_pred ccCCCccccchhcccCCCCCC--CccccccCceecccCCccchHHHHhh--hccccCCCCceEEEEcCcccHHHHHHhhc
Q 017839 167 WSKYNCKSFSCLVQKSPNLGF--DPASEKSSSFLAFKSELDLPVTQFLD--LAKAANSVIRLGIDVGGATGSFAARMKLY 242 (365)
Q Consensus 167 W~~~~~~~~~~l~~~~~~~gf--~~~~~e~~~W~~~~g~~~f~I~~vL~--~~p~~~g~iRi~LDIGCGtG~faa~Lae~ 242 (365)
|++.. ..|. +...++.+.|...-. .|. .++. +.. +.+|+|+|+..|.|.||++|.+.
T Consensus 326 -----------l~~~~-~~g~~~e~F~~Dt~~Wk~~V~--~Y~--~l~~~~i~~---~~iRNVMDMnAg~GGFAAAL~~~ 386 (506)
T PF03141_consen 326 -----------LSSGS-IPGISPEEFKEDTKHWKKRVS--HYK--KLLGLAIKW---GRIRNVMDMNAGYGGFAAALIDD 386 (506)
T ss_pred -----------hhcCC-cCCCCHHHHHHHHHHHHHHHH--HHH--Hhhcccccc---cceeeeeeecccccHHHHHhccC
Confidence 22211 1221 123567788865421 111 1222 333 78999999999999999999999
Q ss_pred CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-----
Q 017839 243 NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG----- 317 (365)
Q Consensus 243 gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG----- 317 (365)
.+.|+.+........+..+..||++..+....|.+++.++++|+||+.+.|..+.+...++..|.||+|||||||
T Consensus 387 ~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 387 PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred CceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 998876544445667788999999999999999999999999999999999999988889999999999999999
Q ss_pred CcchhhhhHHHHHHhhCCceeeEEeec
Q 017839 318 KASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 318 ~~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
...+.......+++++.|+...+....
T Consensus 467 D~~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 467 DTVDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred ccHHHHHHHHHHHHhCcceEEEEecCC
Confidence 222222235567788777766554433
|
; GO: 0008168 methyltransferase activity |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-17 Score=157.10 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=66.1
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||||.++..++++ + ..|++ +|++..|.+.+.++ + .+.++++++++|||+|++||+|+|+++++
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~~~~v~~--vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGPNGKVVG--VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS---EEEE--EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred EEEEeCCChHHHHHHHHHHCCCccEEEE--ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 4599999999999999875 3 46665 45668888776653 2 46789999999999999999999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+..+ .+.+|+|++|||||||
T Consensus 128 n~~d---~~~~l~E~~RVLkPGG 147 (233)
T PF01209_consen 128 NFPD---RERALREMYRVLKPGG 147 (233)
T ss_dssp G-SS---HHHHHHHHHHHEEEEE
T ss_pred hhCC---HHHHHHHHHHHcCCCe
Confidence 8775 4479999999999999
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-17 Score=127.30 Aligned_cols=87 Identities=26% Similarity=0.342 Sum_probs=70.4
Q ss_pred EEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCC---CcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 226 IDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 226 LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
||+|||+|.++..|+++ +..+++++ .+..+.+.++++.. +.+..++.+++||++++||+|++..+++|+ + +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~--~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGID--ISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E--D 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEE--S-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S--H
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEe--CCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-c--C
Confidence 89999999999999999 78888755 45677777666532 348889999999999999999999999877 2 4
Q ss_pred HHHHHHHHHhhhCCCC
Q 017839 302 MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG 317 (365)
.+.+++|+.|||||||
T Consensus 76 ~~~~l~e~~rvLk~gG 91 (95)
T PF08241_consen 76 PEAALREIYRVLKPGG 91 (95)
T ss_dssp HHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHcCcCe
Confidence 5689999999999998
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.1e-15 Score=139.56 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=73.0
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHcC---------CCcEEeccCCCCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALRG---------LVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~Rg---------~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.+||||||||.++..++++ + ..|++ +|++..|.+.+.++. .+.++.++++++||++++||+|++++
T Consensus 76 ~VLDlGcGtG~~~~~la~~~~~~~~V~g--vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 76 RVLDLCCGSGDLAFLLSEKVGSDGKVMG--LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred EEEEECCcCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 3599999999999999875 3 46765 556678887765431 25688899999999999999999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++|+.+ ++.+++|++|||||||
T Consensus 154 ~l~~~~d---~~~~l~ei~rvLkpGG 176 (261)
T PLN02233 154 GLRNVVD---RLKAMQEMYRVLKPGS 176 (261)
T ss_pred ccccCCC---HHHHHHHHHHHcCcCc
Confidence 9987764 4579999999999999
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=140.37 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=72.8
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHH----HcC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..|+++ |..|++++ ++..+.+.+. +.| .+.++.+++..+||++++||+|++..+++|
T Consensus 121 ~VLDiGCG~G~~~~~La~~~g~~v~gvD--~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h 198 (340)
T PLN02244 121 RIVDVGCGIGGSSRYLARKYGANVKGIT--LSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEH 198 (340)
T ss_pred eEEEecCCCCHHHHHHHHhcCCEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhc
Confidence 3599999999999999986 77888754 4455655443 234 367888999999999999999999999998
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+. ..++.|++|+|||||
T Consensus 199 ~~d~---~~~l~e~~rvLkpGG 217 (340)
T PLN02244 199 MPDK---RKFVQELARVAAPGG 217 (340)
T ss_pred cCCH---HHHHHHHHHHcCCCc
Confidence 8753 479999999999999
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=137.89 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=71.9
Q ss_pred CceEEEEcCcccHHHHHHhhc--C------CeEEEeccCCChhHHHHHHHc----CC-----CcEEeccCCCCCCCCCcc
Q 017839 222 IRLGIDVGGATGSFAARMKLY--N------ITILTTTMNLGAPYSEAAALR----GL-----VPLHVPLQQRLPLFDGVL 284 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~--g------v~Vv~~~ldl~~~~~e~a~~R----g~-----v~~~~g~ae~LPF~D~SF 284 (365)
.+ +||++||||..|.++.++ . .+|+. +|++.+|....++| ++ +.++.++|+.|||+|++|
T Consensus 102 m~-~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v--~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 102 MK-VLDVAGGTGDIAFRILRHVKSQFGDRESKVTV--LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred Ce-EEEecCCcchhHHHHHHhhccccCCCCceEEE--EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 44 499999999999999875 1 34444 34456776554433 32 568889999999999999
Q ss_pred ceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+.++++.+++|.+. +++|+|++|||||||
T Consensus 179 D~yTiafGIRN~th~---~k~l~EAYRVLKpGG 208 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHI---QKALREAYRVLKPGG 208 (296)
T ss_pred eeEEEecceecCCCH---HHHHHHHHHhcCCCc
Confidence 999999999999864 489999999999999
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-14 Score=133.89 Aligned_cols=87 Identities=18% Similarity=0.194 Sum_probs=73.1
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
.+||||||||.++..++++ +..|++ +|++..|.+.+.++. .+++++++.+||+|++||+|+++++++|+.+ +
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~~~~v~g--vD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d---~ 126 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVFKYYVVA--LDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHASDN---I 126 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhcCCEEEE--ECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhccCC---H
Confidence 3599999999999999987 567776 556688888776553 5678899999999999999999999987654 4
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
+.+++|++|||||++
T Consensus 127 ~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 127 EKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHhcCce
Confidence 579999999999965
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-13 Score=132.33 Aligned_cols=136 Identities=19% Similarity=0.149 Sum_probs=97.4
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc---CCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR---GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R---g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||||||+|.++..+++. +.++++ +|.+..|.+.+.++ ..+.++.++++.+||++++||+|++..++++|.+
T Consensus 116 ~VLDLGcGtG~~~l~La~~~~~~~Vtg--VD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d 193 (340)
T PLN02490 116 KVVDVGGGTGFTTLGIVKHVDAKNVTI--LDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
T ss_pred EEEEEecCCcHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC
Confidence 3599999999999888764 356665 44556676665543 2367888999999999999999999999988875
Q ss_pred hhhHHHHHHHHHhhhCCCC-------Ccch---------------hhhhHHHHHHhhCCceeeEEeecCCC-C----CCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG-------KASD---------------LENVYGPLIGKLGYKKVKWATANKPN-S----KNG 351 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG-------~~~~---------------l~~~~~~~l~~~gfk~i~w~v~~K~d-~----~~~ 351 (365)
. +.+++|++|+||||| ...+ ..+.|.+++++.||+.+++....... + ..-
T Consensus 194 ~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~ 270 (340)
T PLN02490 194 P---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGL 270 (340)
T ss_pred H---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccc
Confidence 4 368999999999999 1000 12457789999999999877433321 1 122
Q ss_pred ceEEEEeeecCCC
Q 017839 352 EVYLTALLQKPVS 364 (365)
Q Consensus 352 ~~y~sall~KP~~ 364 (365)
.+=.+...+||-+
T Consensus 271 ~~~~~v~~~k~~~ 283 (340)
T PLN02490 271 IMGCSVTGVKPAS 283 (340)
T ss_pred eeeEEEEEecccc
Confidence 2224566777753
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=127.83 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=74.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCC-CcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
.+||+|||+|.++..+++.|..++++ |++..+.+.+.++.. ..++.++++.+||++++||+|+++.++ +|.++ +
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~~v~~~--D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~~~d--~ 119 (251)
T PRK10258 45 HVLDAGCGPGWMSRYWRERGSQVTAL--DLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QWCGN--L 119 (251)
T ss_pred eEEEeeCCCCHHHHHHHHcCCeEEEE--ECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hhcCC--H
Confidence 46999999999999999888888764 455778777766542 467889999999999999999999988 56643 4
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
..++.|+.|+|||||
T Consensus 120 ~~~l~~~~~~Lk~gG 134 (251)
T PRK10258 120 STALRELYRVVRPGG 134 (251)
T ss_pred HHHHHHHHHHcCCCe
Confidence 579999999999999
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-13 Score=128.18 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=87.9
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.|||||||+|..+..+++. +.+|+++ |++..+.+.+.++ ..+.+..+++..+||++++||+|++..++.|+..
T Consensus 55 ~VLDiGcG~G~~a~~la~~~~~~v~gi--D~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~ 132 (263)
T PTZ00098 55 KVLDIGSGLGGGCKYINEKYGAHVHGV--DICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSY 132 (263)
T ss_pred EEEEEcCCCChhhHHHHhhcCCEEEEE--ECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCH
Confidence 3599999999999999764 6777764 4556776666554 2467788888899999999999999999888753
Q ss_pred hhhHHHHHHHHHhhhCCCC----------Ccch----h-------------hhhHHHHHHhhCCceeeEE
Q 017839 299 VIMMEFLFYDVDRVLRGGG----------KASD----L-------------ENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG----------~~~~----l-------------~~~~~~~l~~~gfk~i~w~ 341 (365)
.+...++++++|+||||| .... . .+.|..+++..||+.+.+.
T Consensus 133 -~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 133 -ADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 235689999999999999 0000 0 1257789999999988764
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-13 Score=126.20 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=71.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCC-CCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRL-PLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~L-PF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..|+++|..|+++ |++..+.+.+.++ | .+.++.++++.+ ++.+++||+|++..++++
T Consensus 47 ~vLDiGcG~G~~a~~la~~g~~v~~v--D~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~ 124 (255)
T PRK11036 47 RVLDAGGGEGQTAIKLAELGHQVILC--DLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW 124 (255)
T ss_pred EEEEeCCCchHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence 45999999999999999999888764 5556776665442 3 246788888777 478899999999999977
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+. ..++.++.|+|||||
T Consensus 125 ~~~~---~~~l~~~~~~LkpgG 143 (255)
T PRK11036 125 VADP---KSVLQTLWSVLRPGG 143 (255)
T ss_pred hCCH---HHHHHHHHHHcCCCe
Confidence 6543 479999999999999
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-13 Score=136.18 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=74.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||||||+|.++..|++.|..|++ +|.+..+.+.+.++ + .+.++.++++.+|+.+++||+|+|..+++|+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~~V~G--ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGATVTG--VDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 3599999999999999988888876 45556777666532 1 3567888999999999999999999999998
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++ +.++.++.|+|||||
T Consensus 212 ~d~---~~~L~~l~r~LkPGG 229 (322)
T PLN02396 212 ANP---AEFCKSLSALTIPNG 229 (322)
T ss_pred CCH---HHHHHHHHHHcCCCc
Confidence 764 479999999999999
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.1e-14 Score=113.12 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=71.2
Q ss_pred EEEEcCcccHHHHHHhhcC-----CeEEEeccCCChhHHHHHHHcC-----CCcEEeccCCCCCCCCCccceeEEcch-h
Q 017839 225 GIDVGGATGSFAARMKLYN-----ITILTTTMNLGAPYSEAAALRG-----LVPLHVPLQQRLPLFDGVLDVVRCGHA-V 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g-----v~Vv~~~ldl~~~~~e~a~~Rg-----~v~~~~g~ae~LPF~D~SFDlV~s~~~-L 293 (365)
|||+|||+|..+..+.+.. ..+++ +|+++.+.+.++++. .+.+++++++++|+.+++||+|+|... +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~g--vD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIG--VDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEE--EES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEE--EECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 5999999999999998763 67776 455678877776543 367899999999999999999999554 8
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+|+ +++..+.++.++.++|||||
T Consensus 79 ~~~-~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHL-SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGS-SHHHHHHHHHHHHHTEEEEE
T ss_pred CCC-CHHHHHHHHHHHHHHhCCCC
Confidence 774 45567899999999999998
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-13 Score=126.69 Aligned_cols=87 Identities=18% Similarity=0.094 Sum_probs=71.5
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
.|||||||+|.++..|+++ +..|++ +|++..|.+.+.+++ +.++.++++.++ ++++||+|+|+.+++|..+
T Consensus 32 ~vLDlGcG~G~~~~~l~~~~p~~~v~g--vD~s~~~~~~a~~~~-~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d--- 104 (255)
T PRK14103 32 RVVDLGCGPGNLTRYLARRWPGAVIEA--LDSSPEMVAAARERG-VDARTGDVRDWK-PKPDTDVVVSNAALQWVPE--- 104 (255)
T ss_pred EEEEEcCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHhcC-CcEEEcChhhCC-CCCCceEEEEehhhhhCCC---
Confidence 3599999999999999987 567776 455677888777665 678889988885 6789999999999965433
Q ss_pred HHHHHHHHHhhhCCCC
Q 017839 302 MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG 317 (365)
.+.++++++|+|||||
T Consensus 105 ~~~~l~~~~~~LkpgG 120 (255)
T PRK14103 105 HADLLVRWVDELAPGS 120 (255)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 3579999999999999
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=128.82 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=85.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHH--HHHc-----CCCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEA--AALR-----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~--a~~R-----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++.+|++.|. .|+++ |.+..+... +..+ ..+.+..++.+.+|+ +++||+|+|..+++|
T Consensus 125 ~VLDIGCG~G~~~~~la~~g~~~V~Gi--D~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 125 TVLDVGCGNGYHMWRMLGAGAKLVVGI--DPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred EEEEeccCCcHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 469999999999999999874 47764 444444321 1111 135677888999999 899999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC---------Ccc--------h------------hhhhHHHHHHhhCCceeeEEeecC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG---------KAS--------D------------LENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG---------~~~--------~------------l~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
+.+ +..+|++++|+||||| ... + -.+.+..++++.||+.++..-...
T Consensus 202 ~~d---p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 202 RRS---PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 764 3469999999999999 000 0 012467899999999988764433
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-13 Score=114.08 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=66.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
.|||||||+|.++..|++.|.++++++++ ..+.+. ..+.......+..++++++||+|+|..+++|..+ +.
T Consensus 25 ~vLDiGcG~G~~~~~l~~~~~~~~g~D~~--~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d---~~ 95 (161)
T PF13489_consen 25 RVLDIGCGTGSFLRALAKRGFEVTGVDIS--PQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD---PE 95 (161)
T ss_dssp EEEEESSTTSHHHHHHHHTTSEEEEEESS--HHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH---HH
T ss_pred EEEEEcCCCCHHHHHHHHhCCEEEEEECC--HHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc---HH
Confidence 45999999999999999999888875543 444433 2223333345567788999999999999987653 55
Q ss_pred HHHHHHHhhhCCCC
Q 017839 304 FLFYDVDRVLRGGG 317 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG 317 (365)
.+|.++.|+|||||
T Consensus 96 ~~l~~l~~~LkpgG 109 (161)
T PF13489_consen 96 EFLKELSRLLKPGG 109 (161)
T ss_dssp HHHHHHHHCEEEEE
T ss_pred HHHHHHHHhcCCCC
Confidence 89999999999999
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=118.64 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=69.1
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|.++..+++. +..+++++ ++..+.+.+.++ + .+.++.++++.+||++++||+|++..+++
T Consensus 48 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 48 SALDVCCGTADWSIALAEAVGPEGHVIGLD--FSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred EEEEeCCCcCHHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccc
Confidence 3599999999999999875 25677644 445665544332 2 25678889999999999999999999986
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++.+ ...++.|+.|+|||||
T Consensus 126 ~~~~---~~~~l~~~~~~Lk~gG 145 (231)
T TIGR02752 126 NVPD---YMQVLREMYRVVKPGG 145 (231)
T ss_pred cCCC---HHHHHHHHHHHcCcCe
Confidence 6543 3479999999999999
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=131.13 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=85.9
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc--C---CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR--G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R--g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||+|.++..|+++ +..|++++ ++..+.+.+.++ + .+.+..++...+||++++||+|+|..+++|+.
T Consensus 269 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--iS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~ 346 (475)
T PLN02336 269 KVLDVGCGIGGGDFYMAENFDVHVVGID--LSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ 346 (475)
T ss_pred EEEEEeccCCHHHHHHHHhcCCEEEEEE--CCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccC
Confidence 3599999999999999875 67777654 456676665443 2 35678889989999999999999999998876
Q ss_pred ChhhHHHHHHHHHhhhCCCC--------Cc-----chh-------------hhhHHHHHHhhCCceeeE
Q 017839 298 PVIMMEFLFYDVDRVLRGGG--------KA-----SDL-------------ENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG--------~~-----~~l-------------~~~~~~~l~~~gfk~i~w 340 (365)
+. +.++.|++|+||||| .. .+. .+.|.+++++.||+.+.+
T Consensus 347 d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 347 DK---PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred CH---HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 53 479999999999999 00 000 124678999999998754
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-12 Score=125.29 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=84.7
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHH---HH----cCCCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAA---AL----RGLVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a---~~----Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
+.|||||||+|.++..++..|. .|++ +|.+..|...+ .. .+.+.+...+.+.+|+. ++||+|+|..+++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~G--iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVG--IDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhh
Confidence 3469999999999999988875 4665 45555554321 11 12345566678889875 5899999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC---------Ccch---------h-----------hhhHHHHHHhhCCceeeEEeecC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG---------KASD---------L-----------ENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG---------~~~~---------l-----------~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
|+.+. ..+|+|++|+||||| .+.. . ...+.++++++||+.++.....+
T Consensus 200 H~~dp---~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 200 HRKSP---LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred ccCCH---HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence 98653 469999999999999 0100 0 12346789999999998876555
Q ss_pred CC
Q 017839 346 PN 347 (365)
Q Consensus 346 ~d 347 (365)
..
T Consensus 277 tt 278 (314)
T TIGR00452 277 TT 278 (314)
T ss_pred CC
Confidence 43
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.9e-12 Score=114.39 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=69.3
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
+||+|||+|.++..|+++|.+|+++ |++..+.+.+. ..+. +.+..++...+++. ++||+|+|..+++++ +
T Consensus 34 vLDiGcG~G~~a~~La~~g~~V~gv--D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~-~ 109 (197)
T PRK11207 34 TLDLGCGNGRNSLYLAANGFDVTAW--DKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL-E 109 (197)
T ss_pred EEEECCCCCHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC-C
Confidence 4999999999999999999888765 45556655443 3343 45667777778874 679999999998654 4
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
++....++.++.|+|||||
T Consensus 110 ~~~~~~~l~~i~~~LkpgG 128 (197)
T PRK11207 110 AKTIPGLIANMQRCTKPGG 128 (197)
T ss_pred HHHHHHHHHHHHHHcCCCc
Confidence 4456789999999999999
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=111.01 Aligned_cols=125 Identities=18% Similarity=0.137 Sum_probs=88.8
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCC-C-CCCCCccceeEEcchhhcccChh
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQR-L-PLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~-L-PF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
.+||||||+|.++..+++. +..+++ +|++..+.+.+..++ +.++.++++. + ++++++||+|+|+.+++|..+
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~g--iD~s~~~i~~a~~~~-~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d-- 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYG--IEIDQDGVLACVARG-VNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN-- 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEE--EeCCHHHHHHHHHcC-CeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC--
Confidence 3599999999999999765 455554 555566666665555 5777787754 6 488999999999999977654
Q ss_pred hHHHHHHHHHhhhCCCC-------------------Ccc----------h-------hhhhHHHHHHhhCCceeeEEeec
Q 017839 301 MMEFLFYDVDRVLRGGG-------------------KAS----------D-------LENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG-------------------~~~----------~-------l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
.+.+++|+.|+++++. ... + ..+.+.++++..||+.+....-.
T Consensus 91 -~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 91 -PEEILDEMLRVGRHAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred -HHHHHHHHHHhCCeEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEec
Confidence 3478999999999763 000 0 02246789999999987766554
Q ss_pred CCCCCCCceE
Q 017839 345 KPNSKNGEVY 354 (365)
Q Consensus 345 K~d~~~~~~y 354 (365)
-....+.|||
T Consensus 170 ~~~~~~~~~~ 179 (194)
T TIGR02081 170 VDGRGGREVR 179 (194)
T ss_pred cccccccccc
Confidence 4333556655
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=117.98 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=82.9
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.|||||||+|..+..+++. + ..|++ +|++..+.+.++++ + .+.++.++.+.+||++++||+|++..+++
T Consensus 80 ~VLDiG~G~G~~~~~~a~~~g~~~~v~g--vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 80 TVLDLGSGGGFDCFLAARRVGPTGKVIG--VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred EEEEeCCCCCHHHHHHHHHhCCCCEEEE--ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 4599999999987766653 3 35665 45556676665542 3 35677889999999999999999999986
Q ss_pred cccChhhHHHHHHHHHhhhCCCC--------Ccch--------------------hhhhHHHHHHhhCCceeeEEe
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG--------KASD--------------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG--------~~~~--------------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
++.+ ...++.|++|+||||| .... ..+.+..+++..||..++...
T Consensus 158 ~~~d---~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 158 LSPD---KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred CCCC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 6554 3468999999999999 0000 112467889999998876543
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-11 Score=108.91 Aligned_cols=89 Identities=24% Similarity=0.232 Sum_probs=70.5
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHc-----CCCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALR-----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~R-----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..++++. ..+++++ .+..+.+.+.++ ..+.+..++++.+|+.+++||+|++..+++|
T Consensus 22 ~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d--~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 22 RVLDVGCGPGNDARELARRVGPEGRVVGID--RSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred EEEEeCCCCCHHHHHHHHhcCCCcEEEEEe--CCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhc
Confidence 45999999999999998752 4666644 445565555544 1256777888899999999999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+ .+.++.++.++|||||
T Consensus 100 ~~~---~~~~l~~~~~~L~~gG 118 (241)
T PRK08317 100 LED---PARALAEIARVLRPGG 118 (241)
T ss_pred cCC---HHHHHHHHHHHhcCCc
Confidence 765 3479999999999999
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-12 Score=121.06 Aligned_cols=90 Identities=20% Similarity=0.346 Sum_probs=73.6
Q ss_pred CceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CC-CcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 222 IRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.|+ ||||||.|.++..||+.|..|.+. |+++.+.+.+..+ |+ +.+....+++|-...++||+|+|..+++|.
T Consensus 61 ~~v-LDvGCGgG~Lse~mAr~Ga~Vtgi--D~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRV-LDVGCGGGILSEPLARLGASVTGI--DASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeE-EEecCCccHhhHHHHHCCCeeEEe--cCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 455 999999999999999999998874 5556677666532 32 446667788888777999999999999998
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++ +.+++++.+.+||||
T Consensus 138 ~dp---~~~~~~c~~lvkP~G 155 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGG 155 (243)
T ss_pred CCH---HHHHHHHHHHcCCCc
Confidence 764 469999999999999
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=115.95 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=69.3
Q ss_pred EEEEcCcccHHHHHHhh----cCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 225 GIDVGGATGSFAARMKL----YNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae----~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
+||||||||.++..+++ .+.++++ +|.+..|.+.+.++ + .+.++.+++..+|+++ ||+|+++.++
T Consensus 60 vLDlGcGtG~~~~~l~~~~~~~~~~v~g--vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l 135 (247)
T PRK15451 60 VYDLGCSLGAATLSVRRNIHHDNCKIIA--IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTL 135 (247)
T ss_pred EEEEcccCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHH
Confidence 59999999999988876 2467776 45567787766543 2 3678889998998864 9999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++.+ .....++.+++|+|||||
T Consensus 136 ~~l~~-~~~~~~l~~i~~~LkpGG 158 (247)
T PRK15451 136 QFLEP-SERQALLDKIYQGLNPGG 158 (247)
T ss_pred HhCCH-HHHHHHHHHHHHhcCCCC
Confidence 77654 345679999999999999
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=111.60 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=69.9
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHcC--CCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALRG--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+||||||+|.++..+++.+ ..++++ |.+..+.+.+..+. .+.++.++.+.+||++++||+|++..++++..+
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~- 113 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRFPQAEFIAL--DISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD- 113 (240)
T ss_pred eEEEECCCccHHHHHHHHhCCCCcEEEE--eChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC-
Confidence 46999999999999999875 445554 44455655555442 356788899999999999999999999965433
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
...++.++.|+|||||
T Consensus 114 --~~~~l~~~~~~L~~~G 129 (240)
T TIGR02072 114 --LSQALSELARVLKPGG 129 (240)
T ss_pred --HHHHHHHHHHHcCCCc
Confidence 4579999999999999
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-11 Score=100.14 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=67.6
Q ss_pred EEEEcCcccHHHHHHhh--cCCeEEEeccCCChhHHHHHHHc-------CCCcEEeccC-CCCCCCCCccceeEEcc-hh
Q 017839 225 GIDVGGATGSFAARMKL--YNITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQ-QRLPLFDGVLDVVRCGH-AV 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae--~gv~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~a-e~LPF~D~SFDlV~s~~-~L 293 (365)
+||||||+|.++..+++ .+.+|++++ +++.+.+.+.++ ..+.++.+++ ....+ .+.||+|++.. ++
T Consensus 5 vLDlGcG~G~~~~~l~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 5 VLDLGCGTGRLSIALARLFPGARVVGVD--ISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTL 81 (112)
T ss_dssp EEEETTTTSHHHHHHHHHHTTSEEEEEE--SSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSG
T ss_pred EEEEcCcCCHHHHHHHhcCCCCEEEEEe--CCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCcc
Confidence 49999999999999999 688888755 456676655432 2367888888 33443 44599999999 56
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++.+.+..+.++.++.+.|||||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG 105 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGG 105 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCc
Confidence 555543456789999999999999
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-11 Score=116.12 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=64.5
Q ss_pred eEEEEcCcccHHHHHHhhcC-----CeEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYN-----ITILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-----v~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||+|.++..+++.. ..+++ +|++..+.+.++++. .+.+.++++.++||++++||+|++.++
T Consensus 88 ~vLDiGcG~G~~~~~l~~~~~~~~~~~v~g--iD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----- 160 (272)
T PRK11088 88 ALLDIGCGEGYYTHALADALPEITTMQLFG--LDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----- 160 (272)
T ss_pred eEEEECCcCCHHHHHHHHhcccccCCeEEE--ECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----
Confidence 35999999999999987652 34565 566677877776553 367888999999999999999998653
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
+ ..+.|++|||||||
T Consensus 161 ~-----~~~~e~~rvLkpgG 175 (272)
T PRK11088 161 P-----CKAEELARVVKPGG 175 (272)
T ss_pred C-----CCHHHHHhhccCCC
Confidence 1 23579999999999
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-11 Score=109.50 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=81.4
Q ss_pred EEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
+||||||+|.++..+++. +.+++++++ +..+.+.+.+ .| .+.+..++..+.|++ ++||+|++..+++|
T Consensus 3 vLDiGcG~G~~~~~la~~~~~~~v~gid~--s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 3 VLDFGCGYGSDLIDLAERHPHLQLHGYTI--SPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 599999999999999876 367776554 4555554433 23 356777887777875 48999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------C-c---chh-----------hhhHHHHHHhhCCceeeEE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------K-A---SDL-----------ENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~-~---~~l-----------~~~~~~~l~~~gfk~i~w~ 341 (365)
+.+ ...++.++.|+||||| . . ... ...|..++++.||+.+...
T Consensus 80 ~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 80 IKD---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCC---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 754 3579999999999999 1 0 000 1236788999999887655
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-11 Score=110.62 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=70.3
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcchhhcccChh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
.|||||||+|.++..|++. +..+++ +|++..+.+.+.++ ..+.+..+++.. ||++++||+|++..+++|+. ++
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~~~~~v~g--iDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-p~ 121 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLLPFKHIYG--VEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-PD 121 (204)
T ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEE--EECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-HH
Confidence 3599999999999999886 567776 45567787777653 235678888777 99999999999999999875 44
Q ss_pred hHHHHHHHHHhhhC
Q 017839 301 MMEFLFYDVDRVLR 314 (365)
Q Consensus 301 ~le~aL~Ei~RVLR 314 (365)
.+..++.|++|+++
T Consensus 122 ~~~~~l~el~r~~~ 135 (204)
T TIGR03587 122 NLPTAYRELYRCSN 135 (204)
T ss_pred HHHHHHHHHHhhcC
Confidence 57789999999984
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-11 Score=110.73 Aligned_cols=89 Identities=11% Similarity=0.026 Sum_probs=67.1
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC-CcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+||+|||+|.++..++++|..|++++ ++..+.+.+. ..++ +.+..++....+++ ++||+|+++.+++++. .
T Consensus 34 vLDiGcG~G~~a~~la~~g~~V~~iD--~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~-~ 109 (195)
T TIGR00477 34 TLDLGCGQGRNSLYLSLAGYDVRAWD--HNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ-A 109 (195)
T ss_pred EEEeCCCCCHHHHHHHHCCCeEEEEE--CCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC-H
Confidence 59999999999999999998887754 4455655432 2343 34555566666764 6899999999986654 3
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
+.....+.+++|+|||||
T Consensus 110 ~~~~~~l~~~~~~LkpgG 127 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGG 127 (195)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 456689999999999999
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-11 Score=114.76 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=68.2
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH----HHcCC-CcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA----ALRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a----~~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+||||||+|.++..++++|..|++++ .+..+.+.+ ...++ +.+...+....++ +++||+|++..++++.. .
T Consensus 124 vLDlGcG~G~~~~~la~~g~~V~avD--~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~-~ 199 (287)
T PRK12335 124 ALDLGCGQGRNSLYLALLGFDVTAVD--INQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN-R 199 (287)
T ss_pred EEEeCCCCCHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC-H
Confidence 49999999999999999998887654 445555443 33343 4455566666665 78999999999997654 4
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
+....++.++.|+|||||
T Consensus 200 ~~~~~~l~~~~~~LkpgG 217 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGG 217 (287)
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 456789999999999999
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-11 Score=112.00 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=69.4
Q ss_pred eEEEEcCcccHHHHHHhhc----CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY----NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~----gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
.+||||||+|.++..++++ +..+++ +|++..|.+.+.++ + .+.++.++...+|+++ +|+|++.++
T Consensus 56 ~iLDlGcG~G~~~~~l~~~~~~p~~~v~g--vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~ 131 (239)
T TIGR00740 56 NVYDLGCSRGAATLSARRNINQPNVKIIG--IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFT 131 (239)
T ss_pred EEEEecCCCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecc
Confidence 4599999999999988874 567776 45556777666443 2 2578888999998864 899999999
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++++. +.+...++.+++|+|||||
T Consensus 132 l~~~~-~~~~~~~l~~i~~~LkpgG 155 (239)
T TIGR00740 132 LQFLP-PEDRIALLTKIYEGLNPNG 155 (239)
T ss_pred hhhCC-HHHHHHHHHHHHHhcCCCe
Confidence 97654 3345689999999999999
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-11 Score=122.64 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=85.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-C---CCcEEeccCC--CCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-G---LVPLHVPLQQ--RLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-g---~v~~~~g~ae--~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||+|.++..|++++..|+++ |++..+.+.+.+. + .+.++.+++. .+||++++||+|+|..+++|+.
T Consensus 40 ~vLDlGcG~G~~~~~la~~~~~v~gi--D~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~ 117 (475)
T PLN02336 40 SVLELGAGIGRFTGELAKKAGQVIAL--DFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLS 117 (475)
T ss_pred EEEEeCCCcCHHHHHHHhhCCEEEEE--eCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCC
Confidence 46999999999999999987777764 4556666554432 1 2567777764 6899999999999999998775
Q ss_pred ChhhHHHHHHHHHhhhCCCC----------Ccch-----------hhhhHHHHHHhhCCceeeEE
Q 017839 298 PVIMMEFLFYDVDRVLRGGG----------KASD-----------LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG----------~~~~-----------l~~~~~~~l~~~gfk~i~w~ 341 (365)
+ +....++.+++|+||||| ...+ ....|.+++.+.||......
T Consensus 118 ~-~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 118 D-KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred H-HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence 4 346689999999999999 1111 12357889999998766433
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.6e-11 Score=111.77 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=68.7
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEcchhhcccChh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
.+||||||+|.++..++++ +..|+++ |++..+.+.+.++- .+.++.++++.++ ++++||+|+++.+++ |.++
T Consensus 34 ~vLDiGcG~G~~~~~la~~~~~~~v~gv--D~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~-~~~d- 108 (258)
T PRK01683 34 YVVDLGCGPGNSTELLVERWPAARITGI--DSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQ-WLPD- 108 (258)
T ss_pred EEEEEcccCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChh-hCCC-
Confidence 4599999999999999876 4677764 45567777665542 3567888887775 567999999999995 5543
Q ss_pred hHHHHHHHHHhhhCCCC
Q 017839 301 MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG 317 (365)
...++.++.|+|||||
T Consensus 109 -~~~~l~~~~~~LkpgG 124 (258)
T PRK01683 109 -HLELFPRLVSLLAPGG 124 (258)
T ss_pred -HHHHHHHHHHhcCCCc
Confidence 3579999999999999
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-11 Score=115.30 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=71.0
Q ss_pred CCceEEEEcCcccH----HHHHHhhc-------CCeEEEeccCCChhHHHHHHHc-------------------------
Q 017839 221 VIRLGIDVGGATGS----FAARMKLY-------NITILTTTMNLGAPYSEAAALR------------------------- 264 (365)
Q Consensus 221 ~iRi~LDIGCGtG~----faa~Lae~-------gv~Vv~~~ldl~~~~~e~a~~R------------------------- 264 (365)
.+|| +|+|||||. +|..+++. ++.|+++++ +..+.+.|.+.
T Consensus 100 ~~ri-~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Di--s~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 100 RVRI-WSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDI--DLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CEEE-EeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEEC--CHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 4665 999999995 66666653 356776554 46677665431
Q ss_pred --------CCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 265 --------GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 265 --------g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+.|.+++....|++++.||+|+|..+++++.+ +..+.++.+++|+|||||
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGG 236 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCe
Confidence 1356777888888888999999999999987753 446689999999999999
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.6e-11 Score=104.66 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=69.7
Q ss_pred CceEEEEcCcccHHHHHHhh-c--CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCC--CCCCccceeEEc
Q 017839 222 IRLGIDVGGATGSFAARMKL-Y--NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLP--LFDGVLDVVRCG 290 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae-~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LP--F~D~SFDlV~s~ 290 (365)
.+ +||+|||+|.++..|++ . +..+++++ +++.+.+.+.. .+. +.+..++.++++ |. +.||+|++.
T Consensus 5 ~~-iLDlGcG~G~~~~~l~~~~~~~~~i~gvD--~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 5 KK-ILDLGCGTGRLLIQLAKELNPGAKIIGVD--ISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp SE-EEEET-TTSHHHHHHHHHSTTTSEEEEEE--SSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CE-EEEecCcCcHHHHHHHHhcCCCCEEEEEE--CcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 44 49999999999999994 3 57777754 55777776654 233 678889988888 77 999999999
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++++..+ .+.+++++.|+||+||
T Consensus 81 ~~l~~~~~---~~~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 81 GVLHHFPD---PEKVLKNIIRLLKPGG 104 (152)
T ss_dssp STGGGTSH---HHHHHHHHHHHEEEEE
T ss_pred CchhhccC---HHHHHHHHHHHcCCCc
Confidence 99965543 3479999999999999
|
... |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=103.12 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=69.3
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHc-------CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..+++.+ ..++++++ +..+.+.+.++ ..+.+..++...+++.+++||+|++++++
T Consensus 54 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~--s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 54 KVLDLACGTGDLAIALAKAVGKTGEVVGLDF--SEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 35999999999999998764 66776544 45555544432 23567778888899989999999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++.+ ....+.++.++|+|||
T Consensus 132 ~~~~~---~~~~l~~~~~~L~~gG 152 (239)
T PRK00216 132 RNVPD---IDKALREMYRVLKPGG 152 (239)
T ss_pred ccCCC---HHHHHHHHHHhccCCc
Confidence 77654 3478999999999999
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=111.87 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=84.3
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc---CC-Cc-EEec-cCCCCCCCCCccceeEEcchhhc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR---GL-VP-LHVP-LQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R---g~-v~-~~~g-~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
|.|||||||.|.++-+|+++|+ .|+|++.+. .-..|+...+ |. .. +... ..+.||. .++||+|+|..||+|
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~-lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP-LFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEEEEECCCh-HHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence 4569999999999999999986 577754431 1123332211 21 22 3332 5789998 899999999999999
Q ss_pred ccChhhHHHHHHHHHhhhCCCC---------Ccch------------h--------hhhHHHHHHhhCCceeeEEeecCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG---------KASD------------L--------ENVYGPLIGKLGYKKVKWATANKP 346 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG---------~~~~------------l--------~~~~~~~l~~~gfk~i~w~v~~K~ 346 (365)
.-++ -.+|.++...||||| .+++ . ...+.++++++||+.++.+-..+.
T Consensus 195 rr~P---l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~T 271 (315)
T PF08003_consen 195 RRSP---LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPT 271 (315)
T ss_pred cCCH---HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCccC
Confidence 7754 258999999999999 1110 0 123578999999999987755554
Q ss_pred C
Q 017839 347 N 347 (365)
Q Consensus 347 d 347 (365)
+
T Consensus 272 t 272 (315)
T PF08003_consen 272 T 272 (315)
T ss_pred C
Confidence 4
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=112.53 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=63.7
Q ss_pred CCCceEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHH----HHcCC---CcEEeccCCCCCCCCCccceeEEcc
Q 017839 220 SVIRLGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAA----ALRGL---VPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a----~~Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
|. | |||||||-|.++.+++++ |++|++++++ ..+.+.+ .++|+ +.+...+-.+++. +||.|+|-.
T Consensus 63 G~-~-vLDiGcGwG~~~~~~a~~~g~~v~gitlS--~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 63 GD-R-VLDIGCGWGGLAIYAAERYGCHVTGITLS--EEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp T--E-EEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CC-E-EEEeCCCccHHHHHHHHHcCcEEEEEECC--HHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 53 4 599999999999999998 9999887654 4454443 34554 5567677666655 999999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++|... ......++.++|+|||||
T Consensus 136 ~~Ehvg~-~~~~~~f~~~~~~LkpgG 160 (273)
T PF02353_consen 136 MFEHVGR-KNYPAFFRKISRLLKPGG 160 (273)
T ss_dssp EGGGTCG-GGHHHHHHHHHHHSETTE
T ss_pred chhhcCh-hHHHHHHHHHHHhcCCCc
Confidence 9999864 356689999999999999
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-11 Score=99.21 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=48.1
Q ss_pred EEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCC-CC-CCCccceeEEcchhhc
Q 017839 226 IDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRL-PL-FDGVLDVVRCGHAVNR 295 (365)
Q Consensus 226 LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~L-PF-~D~SFDlV~s~~~L~~ 295 (365)
||||||+|.++..+.++ +.++++++++ +.|.+.++ ..+. ..........+ .+ ..++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDIS--PSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESS--SSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999987 5666665444 44543222 2221 11222222222 11 2369999999999987
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. +++.+++.++++|||||
T Consensus 79 l~---~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 79 LE---DIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp -S----HHHHHHHHTTT-TSS-
T ss_pred hh---hHHHHHHHHHHHcCCCC
Confidence 73 35689999999999999
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=104.12 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=80.8
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC--------CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP--------LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP--------F~D~SFDlV~s~~~ 292 (365)
.+||||||||.++..++++. ..|++++++ . +.. ..+ +.++.+++...+ +.+++||+|+|..+
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~--~-~~~---~~~-v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIGDKGRVIACDIL--P-MDP---IVG-VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcCCCceEEEEecc--c-ccC---CCC-cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 46999999999999998863 467765543 2 211 122 567888887753 78899999999876
Q ss_pred hhcccChh---------hHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhh--CCceeeEEeecCCCC-CCCce
Q 017839 293 VNRWIPVI---------MMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKL--GYKKVKWATANKPNS-KNGEV 353 (365)
Q Consensus 293 L~~w~d~~---------~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~--gfk~i~w~v~~K~d~-~~~~~ 353 (365)
.+ |.... ..+.+|.++.|+||||| ..++ +.++++.+ +|+.+++. -.+..+ ...|.
T Consensus 127 ~~-~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~----~~~~l~~l~~~f~~v~~~-Kp~ssr~~s~e~ 200 (209)
T PRK11188 127 PN-MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG----FDEYLREIRSLFTKVKVR-KPDSSRARSREV 200 (209)
T ss_pred Cc-cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC----HHHHHHHHHhCceEEEEE-CCccccccCcee
Confidence 53 33211 12468999999999999 2222 33455554 68877653 222222 57899
Q ss_pred EEEEe
Q 017839 354 YLTAL 358 (365)
Q Consensus 354 y~sal 358 (365)
|+-++
T Consensus 201 ~~~~~ 205 (209)
T PRK11188 201 YIVAT 205 (209)
T ss_pred EEEee
Confidence 98654
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=107.35 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=68.9
Q ss_pred CceEEEEcCcccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEeccC-CCCC-CCCCccceeEEcchhhcccC
Q 017839 222 IRLGIDVGGATGSFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQ-QRLP-LFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~a-e~LP-F~D~SFDlV~s~~~L~~w~d 298 (365)
.|+ ||+|||.|.+.++|.+ +++.+.|+++| ......+.++|+ +++++|+ +.|+ |+|++||.|+.+.+|++...
T Consensus 15 srV-LDLGCGdG~LL~~L~~~k~v~g~GvEid--~~~v~~cv~rGv-~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 15 SRV-LDLGCGDGELLAYLKDEKQVDGYGVEID--PDNVAACVARGV-SVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred CEE-EecCCCchHHHHHHHHhcCCeEEEEecC--HHHHHHHHHcCC-CEEECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 354 9999999999999987 57888876655 444555667775 6888875 4575 99999999999999988764
Q ss_pred hhhHHHHHHHHHhhhCC
Q 017839 299 VIMMEFLFYDVDRVLRG 315 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRP 315 (365)
++.+|.||.||-|-
T Consensus 91 ---P~~vL~EmlRVgr~ 104 (193)
T PF07021_consen 91 ---PDEVLEEMLRVGRR 104 (193)
T ss_pred ---HHHHHHHHHHhcCe
Confidence 45799999999654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=107.90 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=68.6
Q ss_pred eEEEEcCcccHHHHHHhh----cC--CeEEEeccCCChhHHHHHHHcC---CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKL----YN--ITILTTTMNLGAPYSEAAALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae----~g--v~Vv~~~ldl~~~~~e~a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..|++ .| ..+++ +|++..|.+.+.++. .+.+...++..+++.+++||+|+|+.+++
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTA--IDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEE--EcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 359999999999888864 24 46776 556677877766542 24667777888999899999999999998
Q ss_pred cccChhhHHHHHHHHHhhhC
Q 017839 295 RWIPVIMMEFLFYDVDRVLR 314 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLR 314 (365)
|..++ .+..+++|+.|++|
T Consensus 141 h~~d~-~~~~~l~~~~r~~~ 159 (232)
T PRK06202 141 HLDDA-EVVRLLADSAALAR 159 (232)
T ss_pred cCChH-HHHHHHHHHHHhcC
Confidence 87653 35679999999998
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=124.35 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=71.7
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCC--CCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLP--LFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LP--F~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..++++ +..++++ |++..|.+.+.++ + .+.++.+++..+| |++++||+|+++.+++
T Consensus 421 rVLDIGCGTG~ls~~LA~~~P~~kVtGI--DIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 421 TIVDVGAGGGVMLDMIEEETEDKRIYGI--DISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred EEEEeCCCCCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 3599999999999888875 4677764 5556777665543 2 2456778888898 8999999999999998
Q ss_pred cccC----------hhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIP----------VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d----------~~~le~aL~Ei~RVLRPGG 317 (365)
+|.+ ...+..+|++++|+|||||
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGG 531 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGG 531 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCc
Confidence 7631 2356789999999999999
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-10 Score=108.39 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=66.3
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHH----HHcC---CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
+.+||||||+|.++..++++. .+++.. |. ..+.+.+ .+.| .+.++.++....++++ +|+|++++++
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~l 225 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTIL--NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRIL 225 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEE--ec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhh
Confidence 356999999999999999874 566543 43 3444433 2333 3667888877667764 6999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++|.++ ....++++++|+|||||
T Consensus 226 h~~~~~-~~~~il~~~~~~L~pgG 248 (306)
T TIGR02716 226 YSANEQ-LSTIMCKKAFDAMRSGG 248 (306)
T ss_pred hcCChH-HHHHHHHHHHHhcCCCC
Confidence 988754 34578999999999999
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-10 Score=104.73 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=69.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||||||+|.++..+++.+..+++++ ++..+.+.+.++ + .+.+..++++.++ ++||+|++..+++|+
T Consensus 58 ~vLDiGcG~G~~~~~la~~~~~v~gvD--~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 58 RVLDAGCGTGLLSIELAKRGAIVKAVD--ISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHY 132 (219)
T ss_pred EEEEEeCCCCHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhC
Confidence 459999999999999998888887654 456676655443 2 3567778887776 899999999999887
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+ ..++.++.++.|++++|+
T Consensus 133 ~~-~~~~~~l~~i~~~~~~~~ 152 (219)
T TIGR02021 133 PA-SDMAKALGHLASLTKERV 152 (219)
T ss_pred CH-HHHHHHHHHHHHHhCCCE
Confidence 54 446789999999999877
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-10 Score=110.57 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=68.8
Q ss_pred CceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCC-----CcEEeccCCCCCCC--CCccceeEEcchhh
Q 017839 222 IRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGL-----VPLHVPLQQRLPLF--DGVLDVVRCGHAVN 294 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~-----v~~~~g~ae~LPF~--D~SFDlV~s~~~L~ 294 (365)
-|+++|||||+|.-+..++++.-.|++++ .+..|.+.+.+.-. .+...++.+-.++- ++|.|+|+|..|+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD--~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~- 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKEVIATD--VSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV- 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhhheeec--CCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH-
Confidence 36789999999966666677766777654 45788887765422 33444445556666 9999999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
||.+ ++.++++++||||+.|
T Consensus 111 HWFd---le~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 111 HWFD---LERFYKEAYRVLRKDG 130 (261)
T ss_pred Hhhc---hHHHHHHHHHHcCCCC
Confidence 8986 5589999999999988
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-10 Score=105.70 Aligned_cols=122 Identities=22% Similarity=0.271 Sum_probs=87.2
Q ss_pred CceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCC-cEEecc-CCCCCCCCCccceeEEcchhhccc--
Q 017839 222 IRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLV-PLHVPL-QQRLPLFDGVLDVVRCGHAVNRWI-- 297 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v-~~~~g~-ae~LPF~D~SFDlV~s~~~L~~w~-- 297 (365)
-+.+||||||+|--+..|.+.|...++ +|++.+|.+.+.++.+- .+..++ ++.|||..++||.|++-.++ +|.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiG--vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv-QWLcn 127 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIG--VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV-QWLCN 127 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEe--ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-eeecc
Confidence 356799999999999999999977776 56678899888765332 455554 68999999999999998887 564
Q ss_pred -------ChhhHHHHHHHHHhhhCCCC-----Ccchhhh---hHHHHHHhhCCc---eeeEEeecCC
Q 017839 298 -------PVIMMEFLFYDVDRVLRGGG-----KASDLEN---VYGPLIGKLGYK---KVKWATANKP 346 (365)
Q Consensus 298 -------d~~~le~aL~Ei~RVLRPGG-----~~~~l~~---~~~~~l~~~gfk---~i~w~v~~K~ 346 (365)
+..-+..++.-++.+|++|+ ..++.++ ....-..+.||. .+.|-.++|.
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~ 194 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKN 194 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeeccccccc
Confidence 22334456777999999999 2333322 244444567773 4677655553
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-10 Score=106.03 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=74.9
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC--CCcEEeccC-CCCC--CCCCccceeEEcc
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQ-QRLP--LFDGVLDVVRCGH 291 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~a-e~LP--F~D~SFDlV~s~~ 291 (365)
.++||||||+|.++..+++. +..+++++ ++..+.+.+.+ .+ .+.++.+++ +.++ |++++||+|++.+
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD--~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIE--VHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEE--echHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 34699999999999999876 35677654 44566655543 23 356788888 8888 8899999999976
Q ss_pred hhhcccCh------hhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCc
Q 017839 292 AVNRWIPV------IMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYK 336 (365)
Q Consensus 292 ~L~~w~d~------~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk 336 (365)
.. .|... ...+.++.+++|+||||| ......+...+.++..|++
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF 175 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc
Confidence 54 34321 012468999999999999 2222222244555666653
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=101.42 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=87.1
Q ss_pred CCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc--C--CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR--G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R--g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
+.++.+||+|||.|.|+..|+.+.-.+++ +|+++...+.+++| + .|.+.+++..+. .+++.||+|+++.+++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~Lla--vDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLA--VDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEE--EES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEE--EeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 56778899999999999999999755554 45556666666655 2 366777765443 57999999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------Ccch---------hhhhHHHHHHhhCCceeeEE-eecCCCCCCCceEEEEee
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------KASD---------LENVYGPLIGKLGYKKVKWA-TANKPNSKNGEVYLTALL 359 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~~~~---------l~~~~~~~l~~~gfk~i~w~-v~~K~d~~~~~~y~sall 359 (365)
+.+.++++.++..+.+.|+||| ..++ =.++...|+.+. +.++.-. ..... .+|=-+-|-+
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~ 194 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECRGGS---PNEDCLLARF 194 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-SS---TTSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEcCCC---CCCceEeeee
Confidence 8776678889999999999999 1111 122344555543 3333222 22222 3556677999
Q ss_pred ecCCC
Q 017839 360 QKPVS 364 (365)
Q Consensus 360 ~KP~~ 364 (365)
+||++
T Consensus 195 ~~~~~ 199 (201)
T PF05401_consen 195 RNPVS 199 (201)
T ss_dssp E--SS
T ss_pred cCCcC
Confidence 99987
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-10 Score=107.62 Aligned_cols=88 Identities=25% Similarity=0.254 Sum_probs=67.8
Q ss_pred EEEEcCcccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHc---C---CCc-EEeccCCCCC-CCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKL-YNITILTTTMNLGAPYSEAAALR---G---LVP-LHVPLQQRLP-LFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~R---g---~v~-~~~g~ae~LP-F~D~SFDlV~s~~~L~~ 295 (365)
+|+||||||..-..+-- .+.+|+. +|.++.|.+++.++ . .+. |+.+++++|| .+|+|+|.|+|..+|.-
T Consensus 80 vLEvgcGtG~Nfkfy~~~p~~svt~--lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 80 VLEVGCGTGANFKFYPWKPINSVTC--LDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred eEEecccCCCCcccccCCCCceEEE--eCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 49999999997766653 4666664 56667777665332 1 133 7889999999 89999999999999965
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+ ....|+|+.|+|||||
T Consensus 158 ve~---~~k~L~e~~rlLRpgG 176 (252)
T KOG4300|consen 158 VED---PVKQLNEVRRLLRPGG 176 (252)
T ss_pred cCC---HHHHHHHHHHhcCCCc
Confidence 443 4589999999999999
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=99.96 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=66.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||||||+|.++..|++.+..++++ |++..+.+.+.++ + .+.+..++ +++.+++||+|++..+++||
T Consensus 66 ~vLDvGcG~G~~~~~l~~~~~~v~~~--D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 66 RILDAGCGVGSLSIPLARRGAKVVAS--DISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred EEEEEeCCCCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcC
Confidence 45999999999999999888777764 4556676655432 2 35566655 66678999999999999887
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++ ....++.++.|++++|+
T Consensus 141 ~~~-~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 141 PQE-DAARMLAHLASLTRGSL 160 (230)
T ss_pred CHH-HHHHHHHHHHhhcCCeE
Confidence 654 46778999999886655
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-09 Score=95.81 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=74.3
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+||+|||+|.++..+++++.+++++++ +..+.+.+.+ .+. +.++.++....+ +++||+|+++-.+++..+.
T Consensus 23 vLdlG~G~G~~~~~l~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~ 98 (179)
T TIGR00537 23 VLEIGAGTGLVAIRLKGKGKCILTTDI--NPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDD 98 (179)
T ss_pred EEEeCCChhHHHHHHHhcCCEEEEEEC--CHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcch
Confidence 599999999999999998877776554 4556554433 222 455666665543 4699999998766544321
Q ss_pred ------------------hhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCcee
Q 017839 300 ------------------IMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 300 ------------------~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i 338 (365)
...+..+.++.|+||||| ....-...+...+++.||...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 99 LRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred hcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 114567999999999999 111112236678888898654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.3e-10 Score=111.83 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=67.2
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcC--C-CcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRG--L-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg--~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+||||||+|.++..++++ |++|+++ |++..+.+.+.++. . +.+..++...+ +++||+|++..+++|..+
T Consensus 170 rVLDIGcG~G~~a~~la~~~g~~V~gi--DlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~- 243 (383)
T PRK11705 170 RVLDIGCGWGGLARYAAEHYGVSVVGV--TISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGP- 243 (383)
T ss_pred EEEEeCCCccHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCCh-
Confidence 3599999999999999875 7788764 45567777665542 2 44555665554 579999999999977643
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
...+.++.++.|+|||||
T Consensus 244 ~~~~~~l~~i~r~LkpGG 261 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDG 261 (383)
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 345679999999999999
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-10 Score=99.31 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=54.0
Q ss_pred ccCCChhHHHHHHHc----C-----CCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 250 TMNLGAPYSEAAALR----G-----LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 250 ~ldl~~~~~e~a~~R----g-----~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++|++..|.+.+.++ + .+.+++++++++||++++||+|++.++++++.+ ...+++|++|||||||
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGS 75 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCe
Confidence 356778888776433 1 267899999999999999999999999988764 3479999999999999
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-09 Score=100.55 Aligned_cols=118 Identities=23% Similarity=0.227 Sum_probs=74.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||||||+|.++..+++.|.. |++++ ++..+.+.+.++ ++ . +.-.++..+.+||+|+++...+
T Consensus 122 ~VLDiGcGsG~l~i~~~~~g~~~v~giD--is~~~l~~A~~n~~~~~~-~----~~~~~~~~~~~fD~Vvani~~~---- 190 (250)
T PRK00517 122 TVLDVGCGSGILAIAAAKLGAKKVLAVD--IDPQAVEAARENAELNGV-E----LNVYLPQGDLKADVIVANILAN---- 190 (250)
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEEEE--CCHHHHHHHHHHHHHcCC-C----ceEEEccCCCCcCEEEEcCcHH----
Confidence 4599999999999888887754 76654 445565554432 22 1 1112333344899999875432
Q ss_pred hhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeecC
Q 017839 299 VIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKP 362 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~KP 362 (365)
.+...+.++.|+||||| ...+..+.....+++.||+.++-.. .++| .+.+++|+
T Consensus 191 --~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~-------~~~W-~~~~~~~~ 250 (250)
T PRK00517 191 --PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLE-------RGEW-VALVGKKK 250 (250)
T ss_pred --HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEE-------eCCE-EEEEEEeC
Confidence 23467899999999999 1222223366788899998764221 2333 44666664
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=98.80 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=69.9
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..++..+ ..|+++ |.+..+.+++. +.+. +.++.++++.++ .+++||+|+|.. +.+
T Consensus 45 ~vLDiGcGtG~~s~~la~~~~~~~V~~i--D~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 45 KVIDIGSGAGFPGIPLAIARPELKLTLL--ESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS 120 (181)
T ss_pred eEEEecCCCCccHHHHHHHCCCCeEEEE--eCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC
Confidence 45999999999999887653 566664 44455554432 2343 567888888875 478999999865 322
Q ss_pred ccChhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHh---hCCcee
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGK---LGYKKV 338 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~---~gfk~i 338 (365)
++..+.+++|+||||| .+......+..+.++ .|++.+
T Consensus 121 ------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 121 ------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 2357788999999999 332222234445566 566555
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=7e-10 Score=101.25 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=64.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC--CCcEEeccCCCCC---CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQRLP---LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~LP---F~D~SFDlV~s~~~ 292 (365)
++||||||+|.++..++++ +..++++++ +..+.+.+.+ .+ .+.++.+++..++ +++++||.|++.+.
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p~~~v~gvD~--~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNPDKNFLGIEI--HTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCCCCCEEEEEe--eHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 4699999999999999987 356776544 4555544432 23 3567888887664 66789999998765
Q ss_pred hhcccChh------hHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVI------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~------~le~aL~Ei~RVLRPGG 317 (365)
. +|.... ..+..+.++.|+|||||
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG 126 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGG 126 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCC
Confidence 3 554321 01358999999999999
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=98.57 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=69.6
Q ss_pred eEEEEcCcccHHHHHHhhcCC---eEEEeccCCChhHHHHHHHcC----CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI---TILTTTMNLGAPYSEAAALRG----LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv---~Vv~~~ldl~~~~~e~a~~Rg----~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++..+++.+. .++++ |++..+.+.+.++. .+.++.+++..+|+++++||+|+++.++++.
T Consensus 42 ~vldiG~G~G~~~~~~~~~~~~~~~~~~i--D~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 42 KVLDVACGTGDLAIELAKSAPDRGKVTGV--DFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred eEEEeCCCCChhHHHHHHhcCCCceEEEE--ECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence 459999999999999987642 56654 44455555554432 3677888888999999999999999998765
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+ +..+++++.++|||||
T Consensus 120 ~~---~~~~l~~~~~~L~~gG 137 (223)
T TIGR01934 120 TD---IQKALREMYRVLKPGG 137 (223)
T ss_pred cc---HHHHHHHHHHHcCCCc
Confidence 53 4579999999999999
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-09 Score=100.14 Aligned_cols=90 Identities=16% Similarity=-0.065 Sum_probs=69.3
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH-HHcC-----------------CCcEEeccCCCCCCC-CCccc
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA-ALRG-----------------LVPLHVPLQQRLPLF-DGVLD 285 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a-~~Rg-----------------~v~~~~g~ae~LPF~-D~SFD 285 (365)
+||+|||.|..+..|+++|..|++++ ++....+.+ .+.+ .+.++++|...++.. ...||
T Consensus 38 vLd~GCG~G~da~~LA~~G~~V~gvD--~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD 115 (213)
T TIGR03840 38 VFVPLCGKSLDLAWLAEQGHRVLGVE--LSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVD 115 (213)
T ss_pred EEEeCCCchhHHHHHHhCCCeEEEEe--CCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcC
Confidence 49999999999999999999998754 445555443 2222 256788888777643 46799
Q ss_pred eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.|+-..+++|.. .+..+..+..+.|+|||||
T Consensus 116 ~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG 146 (213)
T TIGR03840 116 AVYDRAALIALP-EEMRQRYAAHLLALLPPGA 146 (213)
T ss_pred EEEechhhccCC-HHHHHHHHHHHHHHcCCCC
Confidence 999888887765 4456779999999999999
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.2e-09 Score=94.76 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=74.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..++.+ +.+|++++ .+..+.+.+. ..+. +.++.++++.+++ +++||+|++...
T Consensus 48 ~VLDiGcGtG~~al~la~~~~~~~V~giD--~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~--- 121 (187)
T PRK00107 48 RVLDVGSGAGFPGIPLAIARPELKVTLVD--SLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV--- 121 (187)
T ss_pred eEEEEcCCCCHHHHHHHHHCCCCeEEEEe--CcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc---
Confidence 3599999999999988763 56777654 4455554443 3343 6778888888887 889999999652
Q ss_pred ccChhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCceeeEE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
. .++.++.+++|+||||| ...........+.+.+|+...+..
T Consensus 122 -~---~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 -A---SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred -c---CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeE
Confidence 1 24468899999999999 222222334556777887754443
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-09 Score=98.09 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=73.0
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHH----HHHHcCCCcEEeccCCC----CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSE----AAALRGLVPLHVPLQQR----LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e----~a~~Rg~v~~~~g~ae~----LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..+++.. .+|++. |.+..|.+ .+.++..+.++.+++.. .++ +++||+|++...
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~av--D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~~- 150 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAV--EFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDVA- 150 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEE--ECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECCC-
Confidence 35999999999999998862 466664 55555554 23333345667777654 223 356999986432
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC---C------cc------hhhhhHHHHHHhhCCceeeEEeec
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG---K------AS------DLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG---~------~~------~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
++.....++.|+.|+||||| . .+ ..-+....+++..||+.+.+....
T Consensus 151 ----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 151 ----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred ----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 11122457899999999999 1 11 011123478889999999887543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.9e-09 Score=93.76 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=57.7
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC--------CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP--------LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP--------F~D~SFDlV~s~~~ 292 (365)
.+||+|||||.++..++++. ..+++++++ +.+ ...+ +.++.++..+.+ +++++||+|++..+
T Consensus 35 ~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis--~~~----~~~~-i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQ--PMK----PIEN-VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred EEEEecCCCCHHHHHHHHHhCCCceEEEEecc--ccc----cCCC-ceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 46999999999998887753 357765554 222 1122 456667765543 56889999998543
Q ss_pred h---hccc-----ChhhHHHHHHHHHhhhCCCC
Q 017839 293 V---NRWI-----PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L---~~w~-----d~~~le~aL~Ei~RVLRPGG 317 (365)
. .+|. ..+..+.++.++.|+|||||
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG 140 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKG 140 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCC
Confidence 1 1122 11223578999999999999
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=88.84 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=74.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC----CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++++..+++++. +..+.+.+++ .+. +.+..++... ++.+++||+|+++..+..
T Consensus 26 ~vLd~G~G~G~~~~~l~~~~~~v~~~D~--s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 26 RVLEVGTGSGIVAIVAAKNGKKVVGVDI--NPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLP 102 (188)
T ss_pred EEEEEccccCHHHHHHHhhcceEEEEEC--CHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCC
Confidence 4599999999999999988888876554 4555554432 121 4566665433 456779999998754322
Q ss_pred cc-----------------C-hhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 296 WI-----------------P-VIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 296 w~-----------------d-~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
.. + ...++.++.++.|+||||| ..... +.+.+++++.||+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE-DEVLEYLEKLGFEAE 169 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH-HHHHHHHHHCCCeee
Confidence 10 0 1224568999999999999 11222 346779999999765
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-09 Score=96.40 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=81.8
Q ss_pred ccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCC
Q 017839 204 LDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQ 275 (365)
Q Consensus 204 ~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae 275 (365)
++..+..+++..+. ... .+||+|||+|.++..+++. +..++++++ +..+.+.+.+ .+. +.++.++..
T Consensus 73 ~~~l~~~~l~~~~~--~~~-~ilDig~G~G~~~~~l~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~~~~~~~~~~~d~~ 147 (251)
T TIGR03534 73 TEELVEAALERLKK--GPL-RVLDLGTGSGAIALALAKERPDARVTAVDI--SPEALAVARKNAARLGLDNVTFLQSDWF 147 (251)
T ss_pred hHHHHHHHHHhccc--CCC-eEEEEeCcHhHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 34455556554331 223 3599999999999999986 457776544 4555554432 232 567777765
Q ss_pred CCCCCCCccceeEEcchh------hcccCh-----------------hhHHHHHHHHHhhhCCCC-----CcchhhhhHH
Q 017839 276 RLPLFDGVLDVVRCGHAV------NRWIPV-----------------IMMEFLFYDVDRVLRGGG-----KASDLENVYG 327 (365)
Q Consensus 276 ~LPF~D~SFDlV~s~~~L------~~w~d~-----------------~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~ 327 (365)
. ++++++||+|+++--. +.+... ......+.++.|+||||| ......+.+.
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~ 226 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVR 226 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHH
Confidence 5 5678999999985321 111110 012357899999999999 2222223467
Q ss_pred HHHHhhCCceee
Q 017839 328 PLIGKLGYKKVK 339 (365)
Q Consensus 328 ~~l~~~gfk~i~ 339 (365)
.++++.||+.+.
T Consensus 227 ~~l~~~gf~~v~ 238 (251)
T TIGR03534 227 ALFEAAGFADVE 238 (251)
T ss_pred HHHHhCCCCceE
Confidence 788999998764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-09 Score=104.47 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=68.6
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHH----HHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSE----AAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e----~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||||||-|.++.+++++ |++|+|++++ +++.+ .++++|.-.-+.-..+..+..++.||-|+|..+++|...
T Consensus 75 ~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS--~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg~ 152 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAEEYGVTVVGVTLS--EEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGK 152 (283)
T ss_pred EEEEeCCChhHHHHHHHHHcCCEEEEeeCC--HHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHHhCc
Confidence 3599999999999999997 7999987765 44443 345566531111123556666667999999999999875
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
. .....++-++++|+|||
T Consensus 153 ~-~~~~ff~~~~~~L~~~G 170 (283)
T COG2230 153 E-NYDDFFKKVYALLKPGG 170 (283)
T ss_pred c-cHHHHHHHHHhhcCCCc
Confidence 3 45679999999999999
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.5e-09 Score=101.17 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=76.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchh--hc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAV--NR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L--~~ 295 (365)
.+||+|||||+++..++..+..+++.++| ..|.+.+.+ .|. +.+..+++.++|+.+++||+|++.--. ..
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~~v~g~Di~--~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGAKVIGCDID--WKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRST 262 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCCeEEEEcCC--HHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcc
Confidence 46999999999998888778888876554 555443322 233 467788999999999999999996211 00
Q ss_pred cc----ChhhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHhhCCcee
Q 017839 296 WI----PVIMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 296 w~----d~~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~~gfk~i 338 (365)
.. .......++.++.|+||||| ...... .+..+++..|| .+
T Consensus 263 ~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 263 TAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-DLESLAEDAFR-VV 311 (329)
T ss_pred cccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-CHHHHHhhcCc-ch
Confidence 00 11224679999999999999 111111 24568899999 54
|
This family is found exclusively in the Archaea. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-09 Score=103.12 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=80.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-----------CCcEEeccCCCCCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-----------LVPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-----------~v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
.+||||||+|.++..++++|..|+++ |++..|.+.+.++. .+.+..++.+. .+++||+|+|..+
T Consensus 147 ~VLDlGcGtG~~a~~la~~g~~V~gv--D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---l~~~fD~Vv~~~v 221 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLALEGAIVSAS--DISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---LSGKYDTVTCLDV 221 (315)
T ss_pred EEEEecCCCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---cCCCcCEEEEcCE
Confidence 35999999999999999999888864 55577776665431 12345555443 3789999999999
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC-----Ccc--------h-----------------hhhhHHHHHHhhCCceeeEEe
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG-----KAS--------D-----------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG-----~~~--------~-----------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
++|+.++ .....+..+.+ +.+|| ... . -.+.+..+++..||+...-.+
T Consensus 222 L~H~p~~-~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~ 299 (315)
T PLN02585 222 LIHYPQD-KADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREM 299 (315)
T ss_pred EEecCHH-HHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEE
Confidence 9887653 33445566655 45666 000 0 023466788999998653221
Q ss_pred ecCCCCCCCceEEEEeee
Q 017839 343 ANKPNSKNGEVYLTALLQ 360 (365)
Q Consensus 343 ~~K~d~~~~~~y~sall~ 360 (365)
. .+..|++.++|
T Consensus 300 ~------~~~~y~~~l~~ 311 (315)
T PLN02585 300 T------ATQFYFSRLLE 311 (315)
T ss_pred e------ecceeHHhhhh
Confidence 1 24567777665
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-09 Score=93.58 Aligned_cols=108 Identities=17% Similarity=0.098 Sum_probs=72.4
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH----cC--CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..+++++ ..|++++. +..+.+.+.+ .+ .+.++.+++. .++ ++.||+|++.....+
T Consensus 34 ~vLDiG~G~G~~~~~la~~~~~~~v~~vD~--s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~~ 109 (187)
T PRK08287 34 HLIDVGAGTGSVSIEAALQFPSLQVTAIER--NPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSGGN 109 (187)
T ss_pred EEEEECCcCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCccC
Confidence 45999999999999998763 56776544 4555544432 22 2456666653 344 468999999765432
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
++..+.++.|+||||| ...+..+....++++.||+.+...
T Consensus 110 ------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 110 ------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred ------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEE
Confidence 3357889999999999 111112336678999999776543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-09 Score=103.27 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=65.2
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCC------------CcEEeccCCCCCCCCCccceeEEc
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGL------------VPLHVPLQQRLPLFDGVLDVVRCG 290 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~------------v~~~~g~ae~LPF~D~SFDlV~s~ 290 (365)
+.+||||||+|-++..|++.|..|+| +|+++.+.+.|.+... +.+...+++.+- +.||+|+|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~G--ID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTG--IDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEe--ecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 33599999999999999999999886 5666777776655311 112223344432 239999999
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+++|..++ +..+.-+.+.|||||
T Consensus 166 evleHV~dp---~~~l~~l~~~lkP~G 189 (282)
T KOG1270|consen 166 EVLEHVKDP---QEFLNCLSALLKPNG 189 (282)
T ss_pred HHHHHHhCH---HHHHHHHHHHhCCCC
Confidence 999998754 468999999999999
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.8e-09 Score=105.29 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=66.6
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHH----HHcCC--CcEEeccCCCC--CCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAA----ALRGL--VPLHVPLQQRL--PLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a----~~Rg~--v~~~~g~ae~L--PF~D~SFDlV~s~~~L 293 (365)
++||||||+|.++..++++ +..++|++ +..++.+.+ ..+|+ +.++.+++..+ +|++++||.|++.+..
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iGIE--I~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIGIE--IHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEEEE--CCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 5699999999999999987 36777654 445554433 33443 56777888765 6889999999987653
Q ss_pred hcccChhh----HHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIM----MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~----le~aL~Ei~RVLRPGG 317 (365)
.|..... ....+.|+.|+|||||
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG 229 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGG 229 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCc
Confidence 5643211 1368999999999999
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=95.87 Aligned_cols=90 Identities=16% Similarity=-0.014 Sum_probs=69.0
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH-HHcCC-----------------CcEEeccCCCCCCCC-Cccc
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA-ALRGL-----------------VPLHVPLQQRLPLFD-GVLD 285 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a-~~Rg~-----------------v~~~~g~ae~LPF~D-~SFD 285 (365)
+||+|||.|..+..|+++|..|++++++ ....+.+ .++++ +.++++|...++..+ ..||
T Consensus 41 vL~~gCG~G~da~~LA~~G~~V~avD~s--~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd 118 (218)
T PRK13255 41 VLVPLCGKSLDMLWLAEQGHEVLGVELS--ELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVD 118 (218)
T ss_pred EEEeCCCChHhHHHHHhCCCeEEEEccC--HHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCee
Confidence 4999999999999999999999875544 4444433 33332 456778877775443 6899
Q ss_pred eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+|+-..++++.. .+..+..+..+.++|||||
T Consensus 119 ~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 119 AVYDRAALIALP-EEMRERYVQQLAALLPAGC 149 (218)
T ss_pred EEEehHhHhhCC-HHHHHHHHHHHHHHcCCCC
Confidence 999988887764 4556789999999999998
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-08 Score=90.40 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=80.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCC-CCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQR-LPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~-LPF~D~SFDlV~s~~~ 292 (365)
.+||+|||+|.++..++.. +.+|++++ .+..+.+.+.+ .| .+.++.+++.. ++..++.||.|++...
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~~~v~avD--~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~ 120 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGETGKVYAVD--KDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG 120 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC
Confidence 4699999999999887653 35677644 44556554432 23 24566777655 4445678999998542
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCC--ceeeEEeecC--CC-----CCCCceEEE
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGY--KKVKWATANK--PN-----SKNGEVYLT 356 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gf--k~i~w~v~~K--~d-----~~~~~~y~s 356 (365)
. ..++.++.++.|+||||| ..+.+. .....++++|| +.+.|.+..- .. .-.+.||+
T Consensus 121 ~------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~npv~~- 192 (198)
T PRK00377 121 S------EKLKEIISASWEIIKKGGRIVIDAILLETVN-NALSALENIGFNLEITEVIIAKGMKTKVGTAMMTRNPIFI- 192 (198)
T ss_pred c------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHH-HHHHHHHHcCCCeEEEEEehhhcccccCCcEeecCCCEEE-
Confidence 1 124568999999999999 122223 35667888997 3355554322 21 12455666
Q ss_pred EeeecC
Q 017839 357 ALLQKP 362 (365)
Q Consensus 357 all~KP 362 (365)
.+++||
T Consensus 193 ~~~~~~ 198 (198)
T PRK00377 193 ISGEKQ 198 (198)
T ss_pred EEEecC
Confidence 345664
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=93.76 Aligned_cols=83 Identities=20% Similarity=0.089 Sum_probs=59.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.+++.+++. +..|++.+ .+..+.+.+.+ .+. +.++.+++...+..+++||+|++..++
T Consensus 75 ~VLDiG~GsG~~~~~la~~~~~~g~V~~iD--~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 75 KILEVGTGSGYQAAVCAEAIERRGKVYTVE--IVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred EEEEECcCccHHHHHHHHhcCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 3599999999999888874 34677644 44555554432 232 567778877655567899999999877
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+. ..|+.|+|||||
T Consensus 153 ~~~---------~~~l~~~L~~gG 167 (205)
T PRK13944 153 STI---------PSALVRQLKDGG 167 (205)
T ss_pred chh---------hHHHHHhcCcCc
Confidence 542 247899999999
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=93.53 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=67.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCC-CCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLF-DGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~-D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++..+++.+..+++++ .+..+.+.+.. .+. +.+..++++.+++. +++||+|++..++++.
T Consensus 48 ~vLdlG~G~G~~~~~l~~~~~~v~~iD--~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 48 RVLDVGCGGGLLSEPLARLGANVTGID--ASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred eEEEECCCCCHHHHHHHhcCCeEEEEe--CCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 359999999999999988877776654 44555444433 232 56667777777765 4899999999999876
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+ .+.++.++.++|+|||
T Consensus 126 ~~---~~~~l~~~~~~L~~gG 143 (224)
T TIGR01983 126 PD---PQAFIRACAQLLKPGG 143 (224)
T ss_pred CC---HHHHHHHHHHhcCCCc
Confidence 54 3478999999999999
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.3e-09 Score=95.56 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=63.8
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHH----HHHHHcCC-CcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYS----EAAALRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~----e~a~~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+||+|||.|..+.+|+++|..|.+.+.+ .... +.+.++++ +.....|.....++ +.||+|++..++++.. .
T Consensus 34 ~LDlgcG~GRNalyLA~~G~~VtAvD~s--~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~-~ 109 (192)
T PF03848_consen 34 ALDLGCGEGRNALYLASQGFDVTAVDIS--PVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ-R 109 (192)
T ss_dssp EEEES-TTSHHHHHHHHTT-EEEEEESS--HHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS--G
T ss_pred EEEcCCCCcHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC-H
Confidence 4999999999999999999998875554 3333 23334454 45566677777764 6899999988886655 4
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
+.....+..|..-++|||
T Consensus 110 ~~~~~i~~~m~~~~~pGG 127 (192)
T PF03848_consen 110 ELRPQIIENMKAATKPGG 127 (192)
T ss_dssp GGHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHhhcCCcE
Confidence 556778999999999999
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=83.03 Aligned_cols=86 Identities=17% Similarity=0.081 Sum_probs=60.7
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC--CCcEEeccCCC-CCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQR-LPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~-LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|.++..++++ +..++++ |.+..+.+.+.+ .+ .+.++.+++.. +++..++||.|++.....
T Consensus 22 ~vldlG~G~G~~~~~l~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 22 VLWDIGAGSGSITIEAARLVPNGRVYAI--ERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred EEEEeCCCCCHHHHHHHHHCCCceEEEE--cCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 4699999999999999886 3566664 444555544322 22 24566666654 555567999999976543
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+ .+.++.++.|+|||||
T Consensus 100 ~------~~~~l~~~~~~Lk~gG 116 (124)
T TIGR02469 100 L------LQEILEAIWRRLRPGG 116 (124)
T ss_pred h------HHHHHHHHHHHcCCCC
Confidence 2 3468999999999999
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=94.22 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=60.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
+|-|+|||.|.+|..+. .+.+|.+. |+.+. . -.+...|..++|.+|++.|+|++..+|.. . +..
T Consensus 75 viaD~GCGdA~la~~~~-~~~~V~Sf--DLva~-------n--~~Vtacdia~vPL~~~svDv~VfcLSLMG-T---n~~ 138 (219)
T PF05148_consen 75 VIADFGCGDAKLAKAVP-NKHKVHSF--DLVAP-------N--PRVTACDIANVPLEDESVDVAVFCLSLMG-T---NWP 138 (219)
T ss_dssp -EEEES-TT-HHHHH---S---EEEE--ESS-S-------S--TTEEES-TTS-S--TT-EEEEEEES---S-S----HH
T ss_pred EEEECCCchHHHHHhcc-cCceEEEe--eccCC-------C--CCEEEecCccCcCCCCceeEEEEEhhhhC-C---CcH
Confidence 56999999999997764 45677654 43211 1 13566789999999999999998777632 1 233
Q ss_pred HHHHHHHhhhCCCC---------CcchhhhhHHHHHHhhCCceeeEE
Q 017839 304 FLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
..+.|.+||||||| --+.. +.+.+.++++||+...-.
T Consensus 139 ~fi~EA~RvLK~~G~L~IAEV~SRf~~~-~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 139 DFIREANRVLKPGGILKIAEVKSRFENV-KQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEGGG-S-H-HHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHheeccCcEEEEEEecccCcCH-HHHHHHHHHCCCeEEecc
Confidence 68999999999999 11222 347789999999876533
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-08 Score=97.28 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=79.3
Q ss_pred EEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHH----HcCC-CcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 225 GIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAA----LRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~----~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
+||+|||+|.++..+++++ ..++++++ ++.+.+.+. +.++ ..++.++.. ...++.||+|+|+-.+|...
T Consensus 200 VLDlGCG~G~ls~~la~~~p~~~v~~vDi--s~~Al~~A~~nl~~n~l~~~~~~~D~~--~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 200 VLDVGCGAGVLSAVLARHSPKIRLTLSDV--SAAALESSRATLAANGLEGEVFASNVF--SDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred EEEeccCcCHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCEEEEcccc--cccCCCccEEEECCCccCCc
Confidence 5999999999999999874 56666444 455554433 2232 234444442 33478999999998775332
Q ss_pred --ChhhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeecCCC
Q 017839 298 --PVIMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKPVS 364 (365)
Q Consensus 298 --d~~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~KP~~ 364 (365)
+....+.++.++.|+||||| ....... |..++++. |..++...... +=.| +.|.-+|+.+
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~-y~~~l~~~-Fg~~~~la~~~----~f~v-~~a~~~~~~~ 341 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLP-YPDLLDET-FGSHEVLAQTG----RFKV-YRAIMTRQAK 341 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCC-hHHHHHHH-cCCeEEEEeCC----CEEE-EEEEccCcCC
Confidence 22345688999999999999 2222222 66667654 55544333221 1123 3577777654
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-08 Score=92.54 Aligned_cols=88 Identities=20% Similarity=0.300 Sum_probs=66.1
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CC-CcEEeccCCCCC-CCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GL-VPLHVPLQQRLP-LFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~-v~~~~g~ae~LP-F~D~SFDlV~s~~~L~~w~d 298 (365)
+||||||+|.++..+++.+..++++++ +..+.+.+.++ +. +.+..++...++ ..++.||+|+++.++++..+
T Consensus 52 vLdiG~G~G~~~~~l~~~~~~v~~iD~--s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~ 129 (233)
T PRK05134 52 VLDVGCGGGILSESMARLGADVTGIDA--SEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPD 129 (233)
T ss_pred EEEeCCCCCHHHHHHHHcCCeEEEEcC--CHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCC
Confidence 599999999999999988877776554 44554444332 22 445566666654 45689999999999987664
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
...++.++.|+|+|||
T Consensus 130 ---~~~~l~~~~~~L~~gG 145 (233)
T PRK05134 130 ---PASFVRACAKLVKPGG 145 (233)
T ss_pred ---HHHHHHHHHHHcCCCc
Confidence 3468999999999999
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=89.67 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=83.9
Q ss_pred cccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc---C---CCcEE
Q 017839 199 AFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR---G---LVPLH 270 (365)
Q Consensus 199 ~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R---g---~v~~~ 270 (365)
.++..++.+++.++...... ...+ +||+|||+|.++..+++.. ..++++++ +..+.+.+.+. + .+.++
T Consensus 88 ipr~~te~l~~~~~~~~~~~-~~~~-vLDiG~GsG~~~~~la~~~~~~~v~~iDi--s~~~l~~a~~n~~~~~~~~i~~~ 163 (275)
T PRK09328 88 IPRPETEELVEWALEALLLK-EPLR-VLDLGTGSGAIALALAKERPDAEVTAVDI--SPEALAVARRNAKHGLGARVEFL 163 (275)
T ss_pred eCCCCcHHHHHHHHHhcccc-CCCE-EEEEcCcHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhCCCCcEEEE
Confidence 34445666667666332211 2234 5999999999999998864 66776544 45555544432 1 25566
Q ss_pred eccCCCCCCCCCccceeEEcchhh------c-------ccC----------hhhHHHHHHHHHhhhCCCC-----Ccchh
Q 017839 271 VPLQQRLPLFDGVLDVVRCGHAVN------R-------WIP----------VIMMEFLFYDVDRVLRGGG-----KASDL 322 (365)
Q Consensus 271 ~g~ae~LPF~D~SFDlV~s~~~L~------~-------w~d----------~~~le~aL~Ei~RVLRPGG-----~~~~l 322 (365)
.++... ++.+++||+|+++--.. . +.+ ....+.++.++.++||||| .+...
T Consensus 164 ~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~ 242 (275)
T PRK09328 164 QGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQ 242 (275)
T ss_pred EccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchH
Confidence 666532 34478999999853110 0 000 0123567888999999999 22222
Q ss_pred hhhHHHHHHhhCCceeeE
Q 017839 323 ENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 323 ~~~~~~~l~~~gfk~i~w 340 (365)
.+.+..+++..||..+.+
T Consensus 243 ~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 243 GEAVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHHHhCCCceeEE
Confidence 334777888999987765
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=87.33 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=70.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCCCCCCccceeEEcchhhc--
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNR-- 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~-- 295 (365)
.+||+|||+|.++..++..+. .++++++ +..+.+.+.+ .+. +.++.++... ++++++||+|+++--...
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~~~v~~vD~--s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGAGSVTAVDI--SRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCCCeEEEEEC--CHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCC
Confidence 359999999999999988764 6766554 4555544332 232 4456666544 356889999999742211
Q ss_pred ------------ccC----hhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 296 ------------WIP----VIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 296 ------------w~d----~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
|.. ...++.++.++.|+||||| ...+.. .+..+++..||...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~-~~~~~l~~~g~~~~ 180 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVE-RTLTRLSEAGLDAE 180 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHH-HHHHHHHHCCCCeE
Confidence 110 0124567889999999999 111222 35567777777543
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.2e-08 Score=93.95 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=58.1
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc----CC---CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR----GL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R----g~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++.|. .|+++++ +..+.+.+.++ +. +.+..++ .+++.++.||+|+++....
T Consensus 162 ~VLDvGcGsG~lai~aa~~g~~~V~avDi--d~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 162 NVIDVGCGSGILSIAALKLGAAKVVGIDI--DPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILAE- 236 (288)
T ss_pred EEEEeCCChhHHHHHHHHcCCCeEEEEEC--CHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCHH-
Confidence 469999999999998888774 6776554 45565554432 22 2223232 3455678999999976542
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+..++.++.|+|||||
T Consensus 237 -----~l~~ll~~~~~~LkpgG 253 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGG 253 (288)
T ss_pred -----HHHHHHHHHHHHcCCCc
Confidence 23468899999999999
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-08 Score=93.53 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=77.5
Q ss_pred HHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCC-CcEEeccCCCCCCCCCccce
Q 017839 210 QFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGL-VPLHVPLQQRLPLFDGVLDV 286 (365)
Q Consensus 210 ~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~-v~~~~g~ae~LPF~D~SFDl 286 (365)
++++..+. ...+.|.|+|||+|.-+..|+++ +..+.| +|-+..|.+.++.|.. ..|..+|....- ++..+|+
T Consensus 21 dLla~Vp~--~~~~~v~DLGCGpGnsTelL~~RwP~A~i~G--iDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dl 95 (257)
T COG4106 21 DLLARVPL--ERPRRVVDLGCGPGNSTELLARRWPDAVITG--IDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDL 95 (257)
T ss_pred HHHhhCCc--cccceeeecCCCCCHHHHHHHHhCCCCeEee--ccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccch
Confidence 45544442 22345699999999999999998 455554 6777889888877764 678889887775 6889999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++++-+| ||.++-. ..|.-+.--|.|||
T Consensus 96 lfaNAvl-qWlpdH~--~ll~rL~~~L~Pgg 123 (257)
T COG4106 96 LFANAVL-QWLPDHP--ELLPRLVSQLAPGG 123 (257)
T ss_pred hhhhhhh-hhccccH--HHHHHHHHhhCCCc
Confidence 9999999 7887542 58888999999999
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.7e-08 Score=93.15 Aligned_cols=91 Identities=11% Similarity=0.018 Sum_probs=62.7
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc-----CC--CcEEeccCCC-CCCCCCc----cceeE
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR-----GL--VPLHVPLQQR-LPLFDGV----LDVVR 288 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R-----g~--v~~~~g~ae~-LPF~D~S----FDlV~ 288 (365)
.+||+|||||..+..|++. +.++++ +|++..|.+.++++ .. +.++.++..+ +++.... .++++
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~~~~~~~~--iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALRQPARYVP--IDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred eEEecCCCcchhHHHHHHhhccCCeEEE--EECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 4599999999999999876 467776 55667787665443 11 3346777654 4554432 33455
Q ss_pred EcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+...+.++. ++....+|++++++|+|||
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG 171 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGG 171 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCC
Confidence 556676655 4445689999999999999
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.7e-08 Score=89.27 Aligned_cols=83 Identities=18% Similarity=0.049 Sum_probs=60.5
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.+++.+++. + ..|++++ .++.+.+.+.++ | .+.+..+++...++.++.||+|++..++.
T Consensus 79 ~VLdIG~GsG~~t~~la~~~~~~~~V~~vE--~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 79 KVLEIGTGSGYHAAVVAEIVGKSGKVVTIE--RIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGP 156 (212)
T ss_pred EEEEECCcccHHHHHHHHhcCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcc
Confidence 4699999999999988875 2 4677644 445666554432 3 26678888877777789999999987654
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. ..++.+.|||||
T Consensus 157 ~~---------~~~l~~~LkpgG 170 (212)
T PRK13942 157 DI---------PKPLIEQLKDGG 170 (212)
T ss_pred cc---------hHHHHHhhCCCc
Confidence 32 236778999999
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.8e-08 Score=89.29 Aligned_cols=83 Identities=18% Similarity=0.042 Sum_probs=58.6
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.+++.|++.. ..|++++ .+..+.+.+.+ .|. +.++.+++...+...+.||+|++..+..
T Consensus 80 ~VLDiG~GsG~~a~~la~~~~~~g~V~~vD--~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 80 KVLEIGTGSGYQAAVLAEIVGRDGLVVSIE--RIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP 157 (215)
T ss_pred EEEEECCCccHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc
Confidence 35999999999999998863 2466644 44556554433 243 5677788766555567999999876543
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+ ...++.+.|||||
T Consensus 158 ~---------~~~~~~~~L~~gG 171 (215)
T TIGR00080 158 K---------IPEALIDQLKEGG 171 (215)
T ss_pred c---------ccHHHHHhcCcCc
Confidence 2 2346889999999
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-08 Score=81.82 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=64.4
Q ss_pred EEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHH----c---CCCcEEeccCCCCC--CCCCccceeEEcchhh
Q 017839 225 GIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAAL----R---GLVPLHVPLQQRLP--LFDGVLDVVRCGHAVN 294 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~----R---g~v~~~~g~ae~LP--F~D~SFDlV~s~~~L~ 294 (365)
+||+|||+|.++..+++++ .++++.++| ....+.++. . ..+.++.++...++ +.++.||+|+++--..
T Consensus 4 vlD~~~G~G~~~~~~~~~~~~~~~gvdi~--~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 4 VLDPGCGSGTFLLAALRRGAARVTGVDID--PEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEETSTTCHHHHHHHHHCTCEEEEEESS--HHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred EEEcCcchHHHHHHHHHHCCCeEEEEEEC--HHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 5999999999999999988 788876665 444444332 1 23678888877765 8899999999987554
Q ss_pred cccC-----hhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIP-----VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d-----~~~le~aL~Ei~RVLRPGG 317 (365)
.... ......++.++.|+|||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG 109 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGG 109 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCe
Confidence 3211 1123568999999999999
|
... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.9e-07 Score=89.48 Aligned_cols=129 Identities=13% Similarity=0.140 Sum_probs=79.3
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChh----HHHHHHHcCCCcEEeccCCC---CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAP----YSEAAALRGLVPLHVPLQQR---LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~----~~e~a~~Rg~v~~~~g~ae~---LPF~D~SFDlV~s~~~L 293 (365)
.|||+|||+|+++..+++. + -.|+++++ +.. +.+.+..+..+.++.+++.. +++..++||+|++..+
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~--s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva- 211 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEF--SHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA- 211 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEEC--cHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC-
Confidence 4699999999999999986 2 35666544 333 34444444445566677642 3334568999998764
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC------------CcchhhhhH---HHHHHhhCCceeeEEeecCCCCCCCceEEEEe
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG------------KASDLENVY---GPLIGKLGYKKVKWATANKPNSKNGEVYLTAL 358 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG------------~~~~l~~~~---~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sal 358 (365)
.. + ..+.++.|+.|+||||| .....++.+ ..+++..||+.+.-.....- .++...+.++
T Consensus 212 ~p---d-q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py--~~~h~~v~~~ 285 (293)
T PTZ00146 212 QP---D-QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF--ERDHAVVIGV 285 (293)
T ss_pred Cc---c-hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc--cCCcEEEEEE
Confidence 21 1 23467789999999999 111112222 36788899997755433222 3555445455
Q ss_pred eec
Q 017839 359 LQK 361 (365)
Q Consensus 359 l~K 361 (365)
+..
T Consensus 286 ~~~ 288 (293)
T PTZ00146 286 YRP 288 (293)
T ss_pred EcC
Confidence 443
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-07 Score=89.27 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=71.2
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcc---
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGH--- 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~--- 291 (365)
.+||+|||+|.++..++++ +..|++++ ++..+.+.+.+ .|. +.++.++... ++++++||+|+++=
T Consensus 124 ~vLDlG~GsG~i~~~la~~~~~~~v~avD--is~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAFPEAEVDAVD--ISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred EEEEEeCchhHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 4599999999999999986 46777654 44556554433 243 5677777532 34567899999961
Q ss_pred ---hhh------cccCh----------hhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCcee
Q 017839 292 ---AVN------RWIPV----------IMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 292 ---~L~------~w~d~----------~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i 338 (365)
.+. ++.+. ...+..+.++.++|+||| .+.... ....++...||.-.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~-~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSME-ALEEAYPDVPFTWL 270 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHH-HHHHHHHhCCCcee
Confidence 000 11111 123567899999999999 333323 36677888786543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-07 Score=94.23 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=90.0
Q ss_pred ccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC-CCcEEec
Q 017839 200 FKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG-LVPLHVP 272 (365)
Q Consensus 200 ~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg-~v~~~~g 272 (365)
++..++.+++.+++..+ ++ .+ +||+|||+|.++..++.+ +..+++++ ++..+.+.+++ .+ .+.++.+
T Consensus 234 PRpeTE~LVe~aL~~l~--~~-~r-VLDLGcGSG~IaiaLA~~~p~a~VtAVD--iS~~ALe~AreNa~~~g~rV~fi~g 307 (423)
T PRK14966 234 PRPETEHLVEAVLARLP--EN-GR-VWDLGTGSGAVAVTVALERPDAFVRASD--ISPPALETARKNAADLGARVEFAHG 307 (423)
T ss_pred CCccHHHHHHHhhhccC--CC-CE-EEEEeChhhHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHcCCcEEEEEc
Confidence 33345666676665332 13 23 599999999999988864 46777654 45666665543 23 2567777
Q ss_pred cCCCCCC-CCCccceeEEcchhh---------------------cccC-hhhHHHHHHHHHhhhCCCC-----Ccchhhh
Q 017839 273 LQQRLPL-FDGVLDVVRCGHAVN---------------------RWIP-VIMMEFLFYDVDRVLRGGG-----KASDLEN 324 (365)
Q Consensus 273 ~ae~LPF-~D~SFDlV~s~~~L~---------------------~w~d-~~~le~aL~Ei~RVLRPGG-----~~~~l~~ 324 (365)
+.....+ .+++||+|+|+--.. ...+ .+..+..+.++.+.|+||| .+.+..+
T Consensus 308 Dl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e 387 (423)
T PRK14966 308 SWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGA 387 (423)
T ss_pred chhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHH
Confidence 7644333 246899999954210 0000 0123456777889999999 2333334
Q ss_pred hHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeecC
Q 017839 325 VYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKP 362 (365)
Q Consensus 325 ~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~KP 362 (365)
....+++..||+.+.- ..|-.+.+-++.+-+.|-
T Consensus 388 ~V~~ll~~~Gf~~v~v----~kDl~G~dR~v~~~~~~~ 421 (423)
T PRK14966 388 AVRGVLAENGFSGVET----LPDLAGLDRVTLGKYMKH 421 (423)
T ss_pred HHHHHHHHCCCcEEEE----EEcCCCCcEEEEEEEhhh
Confidence 4777888889876532 223222333444655553
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=89.74 Aligned_cols=136 Identities=20% Similarity=0.289 Sum_probs=90.4
Q ss_pred EEEEcCcccHHHHHHhhcC----CeEEEeccCCChhHHHHHHHcC-----CC-cEEecc-CC--CCCCCCCccceeEEcc
Q 017839 225 GIDVGGATGSFAARMKLYN----ITILTTTMNLGAPYSEAAALRG-----LV-PLHVPL-QQ--RLPLFDGVLDVVRCGH 291 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g----v~Vv~~~ldl~~~~~e~a~~Rg-----~v-~~~~g~-ae--~LPF~D~SFDlV~s~~ 291 (365)
+|+||||.|...--+.+.. ..+.+ .|.+....+...++. .+ +++... .. .-|...+++|+|++.+
T Consensus 75 ilEvGCGvGNtvfPll~~~~n~~l~v~a--cDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 75 ILEVGCGVGNTVFPLLKTSPNNRLKVYA--CDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred heeeccCCCcccchhhhcCCCCCeEEEE--cCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 4999999999887777642 55554 455555555554432 12 233221 22 3478899999999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC-----------------Ccch------------------hhhhHHHHHHhhCCc
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG-----------------KASD------------------LENVYGPLIGKLGYK 336 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG-----------------~~~~------------------l~~~~~~~l~~~gfk 336 (365)
+|.-..+ +.+..++.+++|+||||| ..++ -.+.+..|+...||.
T Consensus 153 vLSAi~p-ek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 153 VLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EEeccCh-HHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 9976555 457789999999999999 0000 012345799999997
Q ss_pred eeeEEee------cCCCCCCCceEEEEeeecCC
Q 017839 337 KVKWATA------NKPNSKNGEVYLTALLQKPV 363 (365)
Q Consensus 337 ~i~w~v~------~K~d~~~~~~y~sall~KP~ 363 (365)
.++-.+. .+.......+++-|.++||.
T Consensus 232 ~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 232 EVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL 264 (264)
T ss_pred hhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence 7544322 22223566788999999994
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-08 Score=95.54 Aligned_cols=128 Identities=18% Similarity=0.232 Sum_probs=90.4
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCc-EEeccCCCC-C-CCCCc
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVP-LHVPLQQRL-P-LFDGV 283 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~-~~~g~ae~L-P-F~D~S 283 (365)
.+.+++..... |..|.+||+|||||-++..|..+-....| +|+++.|.+.+.++|+.. ++++++..+ + -.+..
T Consensus 113 ~l~emI~~~~~--g~F~~~lDLGCGTGL~G~~lR~~a~~ltG--vDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 113 LLAEMIGKADL--GPFRRMLDLGCGTGLTGEALRDMADRLTG--VDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHHhccC--CccceeeecccCcCcccHhHHHHHhhccC--CchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCc
Confidence 34555543222 55677899999999999999876444443 567789999999998743 455555432 3 46788
Q ss_pred cceeEEcchhhcccChhhHHHHHHHHHhhhCCCC----Ccchh----------------hhhH-HHHHHhhCCceeeEE
Q 017839 284 LDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG----KASDL----------------ENVY-GPLIGKLGYKKVKWA 341 (365)
Q Consensus 284 FDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG----~~~~l----------------~~~~-~~~l~~~gfk~i~w~ 341 (365)
||+|++..|+.-.. .++-.+.-+.+.|.||| ..+++ .+.| ..+++..||..+...
T Consensus 189 ~DLi~AaDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 189 FDLIVAADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred ccchhhhhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 99999999996544 46678999999999999 11111 1233 468899999888655
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-08 Score=93.53 Aligned_cols=102 Identities=13% Similarity=0.214 Sum_probs=74.9
Q ss_pred HHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc---CC-CcEEeccCCCCCCCCCc
Q 017839 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR---GL-VPLHVPLQQRLPLFDGV 283 (365)
Q Consensus 208 I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R---g~-v~~~~g~ae~LPF~D~S 283 (365)
.+.+.+.++. ...++|||||.|..+..|..+|+.-+. -+|.+..|.+-++.. ++ +..++++-|.|||.+|+
T Consensus 63 aDrvfD~kk~----fp~a~diGcs~G~v~rhl~~e~vekli-~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens 137 (325)
T KOG2940|consen 63 ADRVFDCKKS----FPTAFDIGCSLGAVKRHLRGEGVEKLI-MMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENS 137 (325)
T ss_pred HHHHHHHhhh----CcceeecccchhhhhHHHHhcchhhee-eeecchHHHHHhhccCCCceEEEEEecchhcccccccc
Confidence 4445555442 345799999999999999988854322 245556676654332 22 34567788999999999
Q ss_pred cceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 284 LDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 284 FDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
||+|+++..+ ||.++ +...+..+.-.|||.|
T Consensus 138 ~DLiisSlsl-HW~Nd--LPg~m~~ck~~lKPDg 168 (325)
T KOG2940|consen 138 VDLIISSLSL-HWTND--LPGSMIQCKLALKPDG 168 (325)
T ss_pred hhhhhhhhhh-hhhcc--CchHHHHHHHhcCCCc
Confidence 9999999999 79864 3468899999999999
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-07 Score=89.25 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=81.8
Q ss_pred ccCCccchHHHHhhhc-cccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC---CcE
Q 017839 200 FKSELDLPVTQFLDLA-KAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL---VPL 269 (365)
Q Consensus 200 ~~g~~~f~I~~vL~~~-p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~ 269 (365)
++..++.+++.++... +. ....+ +||+|||+|.++..++.. +..|+++++ +..+.+.+.+ .+. +.+
T Consensus 94 Pr~ete~lv~~~l~~~~~~-~~~~~-vLDlG~GsG~i~l~la~~~~~~~v~avDi--s~~al~~a~~n~~~~~~~~~v~~ 169 (284)
T TIGR00536 94 PRPETEELVEKALASLISQ-NPILH-ILDLGTGSGCIALALAYEFPNAEVIAVDI--SPDALAVAEENAEKNQLEHRVEF 169 (284)
T ss_pred CCCccHHHHHHHHHHhhhc-CCCCE-EEEEeccHhHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCcEEE
Confidence 3444566666665422 21 11134 599999999999999876 357776544 4555554433 232 567
Q ss_pred EeccCCCCCCCCCccceeEEcc-------------hhhcccCh----------hhHHHHHHHHHhhhCCCC-----Ccch
Q 017839 270 HVPLQQRLPLFDGVLDVVRCGH-------------AVNRWIPV----------IMMEFLFYDVDRVLRGGG-----KASD 321 (365)
Q Consensus 270 ~~g~ae~LPF~D~SFDlV~s~~-------------~L~~w~d~----------~~le~aL~Ei~RVLRPGG-----~~~~ 321 (365)
+.++... +++++.||+|+++- ++. +.+. ...+..+.++.++|+||| .+..
T Consensus 170 ~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~-~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 170 IQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVR-FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred EECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccc-cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 7776543 45566899999961 221 1111 134578899999999999 3333
Q ss_pred hhhhHHHHHH-hhCCceee
Q 017839 322 LENVYGPLIG-KLGYKKVK 339 (365)
Q Consensus 322 l~~~~~~~l~-~~gfk~i~ 339 (365)
..+....++. ..||..+.
T Consensus 248 q~~~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 248 QQKSLKELLRIKFTWYDVE 266 (284)
T ss_pred HHHHHHHHHHhcCCCceeE
Confidence 3334566666 56887654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-07 Score=71.84 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=63.0
Q ss_pred EEEEcCcccHHHHHHhh-cCCeEEEeccCCChhHHHHHH---HcC---CCcEEeccCCCCCC-CCCccceeEEcchhhcc
Q 017839 225 GIDVGGATGSFAARMKL-YNITILTTTMNLGAPYSEAAA---LRG---LVPLHVPLQQRLPL-FDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~---~Rg---~v~~~~g~ae~LPF-~D~SFDlV~s~~~L~~w 296 (365)
+||+|||+|.++..+++ .+..+++.+++ ....+.+. ..+ .+.++.++....+. ..+.||+|++..+++++
T Consensus 2 ildig~G~G~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGVDIS--PVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred eEEEcCCccHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 49999999999999987 45666664443 44444333 111 24566676655543 67889999999998653
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
. ......+..+.++|||||
T Consensus 80 ~--~~~~~~l~~~~~~l~~~g 98 (107)
T cd02440 80 V--EDLARFLEEARRLLKPGG 98 (107)
T ss_pred h--hHHHHHHHHHHHHcCCCC
Confidence 2 245678999999999999
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=94.93 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=60.8
Q ss_pred EEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----C-----CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 225 GIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----G-----LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----g-----~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
+||+|||+|.++..+++++ ..|++++. +..+.+.+++. + .+.++.+++.. .+.+++||+|+|+-.+
T Consensus 232 VLDLGCGtGvi~i~la~~~P~~~V~~vD~--S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 232 IVDLGCGNGVIGLTLLDKNPQAKVVFVDE--SPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPF 308 (378)
T ss_pred EEEEeccccHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCc
Confidence 5999999999999999874 67776544 45555544321 1 23556565422 1345689999998665
Q ss_pred hcc--cChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRW--IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w--~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.- ..+.....++.++.|+|||||
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKING 334 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhcccCC
Confidence 321 122334678999999999999
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=90.73 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=71.1
Q ss_pred ceEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHHHH---HcCCCc--EEeccCCCCCCCC-CccceeEEcchhhc
Q 017839 223 RLGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEAAA---LRGLVP--LHVPLQQRLPLFD-GVLDVVRCGHAVNR 295 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~a~---~Rg~v~--~~~g~ae~LPF~D-~SFDlV~s~~~L~~ 295 (365)
+.+||+|||+|-++...++.|+. |+++++| ....+.++ +++.++ ........+.+.. +.||+|+++---+
T Consensus 164 ~~vlDvGcGSGILaIAa~kLGA~~v~g~DiD--p~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~- 240 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKLGAKKVVGVDID--PQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE- 240 (300)
T ss_pred CEEEEecCChhHHHHHHHHcCCceEEEecCC--HHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH-
Confidence 46799999999999999999954 8887776 33333332 233333 1122223344555 5999999986322
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w 340 (365)
-+.....++.|.||||| ...+..+.....+++.||+.+.+
T Consensus 241 -----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 241 -----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred -----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 23468889999999999 22222333556677778877643
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=92.11 Aligned_cols=91 Identities=10% Similarity=-0.048 Sum_probs=63.3
Q ss_pred ceEEEEcCcccHHHHH-Hhh-c--CCeEEEeccCCChhHHHHHHH-----c---CCCcEEeccCCCCCCCCCccceeEEc
Q 017839 223 RLGIDVGGATGSFAAR-MKL-Y--NITILTTTMNLGAPYSEAAAL-----R---GLVPLHVPLQQRLPLFDGVLDVVRCG 290 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~-Lae-~--gv~Vv~~~ldl~~~~~e~a~~-----R---g~v~~~~g~ae~LPF~D~SFDlV~s~ 290 (365)
+.|+|||||.|.+++. +++ . +.++++.+. ++.+.+.+++ . ..+.|..+++..++-..+.||+|++.
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~--d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDI--DPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 3469999998855444 332 2 346666544 4556554432 2 24788999877664345789999999
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++++|... ..+.++..+.|+|||||
T Consensus 203 -ALi~~dk~-~k~~vL~~l~~~LkPGG 227 (296)
T PLN03075 203 -ALVGMDKE-EKVKVIEHLGKHMAPGA 227 (296)
T ss_pred -cccccccc-cHHHHHHHHHHhcCCCc
Confidence 88888532 35689999999999999
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-07 Score=87.42 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=84.0
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
..+||||.|-|..+.+|+...-.|.++.. +..|.....+||.- .+- .....=.+..||+|.|..+|+.-.. +
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~f~~v~aTE~--S~~Mr~rL~~kg~~-vl~--~~~w~~~~~~fDvIscLNvLDRc~~---P 167 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPLFKEVYATEA--SPPMRWRLSKKGFT-VLD--IDDWQQTDFKFDVISCLNVLDRCDR---P 167 (265)
T ss_pred CceEEecCCCcHHHHHHHhhcceEEeecC--CHHHHHHHHhCCCe-EEe--hhhhhccCCceEEEeehhhhhccCC---H
Confidence 34699999999999999987656665544 57888777888852 222 1222223568999999999965433 3
Q ss_pred HHHHHHHHhhhCCCC---------------Cc-------------------chhhhhHHHHHHhhCCceeeEEeecCCC
Q 017839 303 EFLFYDVDRVLRGGG---------------KA-------------------SDLENVYGPLIGKLGYKKVKWATANKPN 347 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG---------------~~-------------------~~l~~~~~~~l~~~gfk~i~w~v~~K~d 347 (365)
...|++|++.|+|+| .+ ++....+ +.++-+||+..+|.....+-
T Consensus 168 ~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v~~~tr~PYLc 245 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAGFEVERWTRLPYLC 245 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcCCEEEEEeccCccc
Confidence 479999999999999 11 1112233 88999999999999888764
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-07 Score=88.14 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
+.+ +|-|+|||-|.+|. .++ ..|.+ +|+.+ .+ -.+...|..++|.+|+|.|++++-..|.. .
T Consensus 180 ~~~-vIaD~GCGEakiA~--~~~-~kV~S--fDL~a-------~~--~~V~~cDm~~vPl~d~svDvaV~CLSLMg-t-- 241 (325)
T KOG3045|consen 180 KNI-VIADFGCGEAKIAS--SER-HKVHS--FDLVA-------VN--ERVIACDMRNVPLEDESVDVAVFCLSLMG-T-- 241 (325)
T ss_pred Cce-EEEecccchhhhhh--ccc-cceee--eeeec-------CC--CceeeccccCCcCccCcccEEEeeHhhhc-c--
Confidence 544 56999999999886 222 23443 45421 11 13456688889999999999996555532 1
Q ss_pred hhHHHHHHHHHhhhCCCC--C-------cchhhhhHHHHHHhhCCceeeEEeec
Q 017839 300 IMMEFLFYDVDRVLRGGG--K-------ASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG--~-------~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
++..++.|++||||||| . -.+. ..+...+..+||...+-.+.+
T Consensus 242 -n~~df~kEa~RiLk~gG~l~IAEv~SRf~dv-~~f~r~l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 242 -NLADFIKEANRILKPGGLLYIAEVKSRFSDV-KGFVRALTKLGFDVKHKDVSN 293 (325)
T ss_pred -cHHHHHHHHHHHhccCceEEEEehhhhcccH-HHHHHHHHHcCCeeeehhhhc
Confidence 34468999999999999 1 1222 247788999999876544443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.9e-07 Score=90.44 Aligned_cols=134 Identities=15% Similarity=0.194 Sum_probs=80.2
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCC--CCCCccceeE----Ec
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLP--LFDGVLDVVR----CG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LP--F~D~SFDlV~----s~ 290 (365)
.+||+|||+|..+..+++++ .+|++. |.+..+.+.+.+ .|. +.++.+++..++ +.+++||.|+ |+
T Consensus 247 ~VLDlgaG~G~~t~~la~~~~~~~v~a~--D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 247 RVLDACAAPGGKTAHILELAPQAQVVAL--DIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred EEEEeCCCCChHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 35999999999999998864 467764 444555544432 232 456778887765 4578899998 33
Q ss_pred ch--hh-----cccC-hh-------hHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCceee------
Q 017839 291 HA--VN-----RWIP-VI-------MMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYKKVK------ 339 (365)
Q Consensus 291 ~~--L~-----~w~d-~~-------~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk~i~------ 339 (365)
.. +. .|.. .. ..+.+|.++.++||||| ..++.++.....+++. +|+.+.
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~ 404 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGTPQQ 404 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCCCCC
Confidence 21 11 1211 11 12468999999999999 2344444555666655 454333
Q ss_pred --EEeecCCCCCCCceEEEEeeec
Q 017839 340 --WATANKPNSKNGEVYLTALLQK 361 (365)
Q Consensus 340 --w~v~~K~d~~~~~~y~sall~K 361 (365)
+.+-... .+.++.|+ |.++|
T Consensus 405 ~~~~~~P~~-~~~dGff~-a~l~k 426 (427)
T PRK10901 405 PGRQLLPGE-EDGDGFFY-ALLIK 426 (427)
T ss_pred CceEECCCC-CCCCCeEE-EEEEE
Confidence 2222211 13455665 77776
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.7e-07 Score=90.34 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=82.3
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCC----CCCCccceeEE-
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLP----LFDGVLDVVRC- 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LP----F~D~SFDlV~s- 289 (365)
.|||+|||+|..+..+++. ...|++. |.+..+.+.+.+ .|. +.++.+++..++ +.+++||.|++
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~--D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQGEIWAV--DRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCCceEEEE--cCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 3599999999999988875 2466654 555556554432 243 567778887776 66889999995
Q ss_pred ---c--chhhcccC------hhh-------HHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCceeeEE
Q 017839 290 ---G--HAVNRWIP------VIM-------MEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYKKVKWA 341 (365)
Q Consensus 290 ---~--~~L~~w~d------~~~-------le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk~i~w~ 341 (365)
+ .++++-.+ ... ....|.++.|+||||| ..++.+++....+++. +|+....
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~- 411 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPP- 411 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCC-
Confidence 2 23322111 011 2467999999999999 3344455566677765 4543211
Q ss_pred eecCC--CCCCCceEEEEeeecC
Q 017839 342 TANKP--NSKNGEVYLTALLQKP 362 (365)
Q Consensus 342 v~~K~--d~~~~~~y~sall~KP 362 (365)
.... +..+.+.|+-|.|+|.
T Consensus 412 -~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 412 -KQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred -CCccCCCCCCCCcEEEEEEEeC
Confidence 0001 1123345555999884
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-07 Score=86.88 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=75.9
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC----CCcEEeccCCCC--CCCCCccceeEE---
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG----LVPLHVPLQQRL--PLFDGVLDVVRC--- 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg----~v~~~~g~ae~L--PF~D~SFDlV~s--- 289 (365)
.|||.+.|-|.+|....++|+ .|+++..|. ...+.+.. |+ .+.++.||+.++ .|.|++||+|+-
T Consensus 137 rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp--~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPP 214 (287)
T COG2521 137 RVLDTCTGLGYTAIEALERGAIHVITVEKDP--NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPP 214 (287)
T ss_pred EeeeeccCccHHHHHHHHcCCcEEEEEeeCC--CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCCC
Confidence 459999999999999999997 888765552 12222211 11 256788887654 588999999873
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC-------------CcchhhhhHHHHHHhhCCceee
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG-------------KASDLENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------------~~~~l~~~~~~~l~~~gfk~i~ 339 (365)
.+++-. .. --+.+..|++||||||| .+.++.+-..+-++++||.+++
T Consensus 215 RfS~Ag--eL-YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 215 RFSLAG--EL-YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred ccchhh--hH-hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 111111 10 12468999999999999 2344555567789999998774
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=82.63 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=78.7
Q ss_pred ccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc---CCCcEEeccC
Q 017839 200 FKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR---GLVPLHVPLQ 274 (365)
Q Consensus 200 ~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R---g~v~~~~g~a 274 (365)
++..++.+++.++...+...+.. .+||+|||+|.++..+++. +..|+++++ +..+.+.+.+. ....++.++.
T Consensus 66 pr~~Te~Lv~~~l~~~~~~~~~~-~vLDlg~GsG~i~l~la~~~~~~~v~~vDi--s~~al~~A~~N~~~~~~~~~~~D~ 142 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPRSGTL-VVVDLCCGSGAVGAALAAALDGIELHAADI--DPAAVRCARRNLADAGGTVHEGDL 142 (251)
T ss_pred CCccHHHHHHHHHHhhcccCCCC-EEEEecCchHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCEEEEeec
Confidence 44456667777765432111222 4599999999999998865 457776544 45565544321 1146777775
Q ss_pred CC-CCC-CCCccceeEEcchhh--------------ccc-------C--hhhHHHHHHHHHhhhCCCC-----C-cchhh
Q 017839 275 QR-LPL-FDGVLDVVRCGHAVN--------------RWI-------P--VIMMEFLFYDVDRVLRGGG-----K-ASDLE 323 (365)
Q Consensus 275 e~-LPF-~D~SFDlV~s~~~L~--------------~w~-------d--~~~le~aL~Ei~RVLRPGG-----~-~~~l~ 323 (365)
.+ ++- ..+.||+|+++--.. +.. . .+.++..+..+.++||||| . ..+..
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~ 222 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAP 222 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHH
Confidence 43 331 135799999873110 110 0 0113467778889999999 2 23333
Q ss_pred hhHHHHHHhhCCc
Q 017839 324 NVYGPLIGKLGYK 336 (365)
Q Consensus 324 ~~~~~~l~~~gfk 336 (365)
....++++.||+
T Consensus 223 -~v~~~l~~~g~~ 234 (251)
T TIGR03704 223 -LAVEAFARAGLI 234 (251)
T ss_pred -HHHHHHHHCCCC
Confidence 356677777764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-06 Score=88.61 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=69.2
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEE----c
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRC----G 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s----~ 290 (365)
.+||+|||+|..+..+++. +..|++. |.+..+.+.+.+ .|. +.++.+++..++ ++++||+|++ +
T Consensus 253 ~VLDlgaG~G~kt~~la~~~~~~~~V~av--D~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 253 TVLDLCAAPGGKSTFMAELMQNRGQITAV--DRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCT 329 (445)
T ss_pred EEEEECCCCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCC
Confidence 4699999999988888763 3466654 455666554432 343 567778887776 6789999994 2
Q ss_pred c--hhh-----cccC-hhh-------HHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCc
Q 017839 291 H--AVN-----RWIP-VIM-------MEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYK 336 (365)
Q Consensus 291 ~--~L~-----~w~d-~~~-------le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk 336 (365)
. ++. .|.. .+. ...+|.++.++||||| ..++.+++....+++. +|+
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 400 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFS 400 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence 1 111 1211 111 2358999999999999 2333344455566655 354
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.8e-07 Score=86.41 Aligned_cols=109 Identities=14% Similarity=0.065 Sum_probs=76.0
Q ss_pred EEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcchhhcccCh--
Q 017839 225 GIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV-- 299 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~-- 299 (365)
|||+|||+|.++..++++ +..|++++ ++..+.+.++++ ..+.++.+++..++ .+++||+|+++-.+.+....
T Consensus 68 VLDLGcGsGilsl~la~r~~~~~V~gVD--isp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 68 VLDLCAGIGRLSFCMLHRCKPEKIVCVE--LNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred EEEcCCCCCHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchhh
Confidence 599999999999888775 46777654 446677666543 23567888887765 35789999997766542211
Q ss_pred hh---------------HHHHHHHHHhhhCCCC------------CcchhhhhHHHHHHhhCCc
Q 017839 300 IM---------------MEFLFYDVDRVLRGGG------------KASDLENVYGPLIGKLGYK 336 (365)
Q Consensus 300 ~~---------------le~aL~Ei~RVLRPGG------------~~~~l~~~~~~~l~~~gfk 336 (365)
.. ++..+.++.++|+|+| +..--.+.|..+++..||.
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 00 2467788899999999 1111134588999999984
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.2e-07 Score=81.58 Aligned_cols=82 Identities=17% Similarity=0.074 Sum_probs=56.1
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CC--CcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
+||||||+|.++..|++.+..+++++. +..+.+.+.++ +. +.+..+++......++.||+|++..++.+.
T Consensus 82 VLeiG~GsG~~t~~la~~~~~v~~vd~--~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~-- 157 (212)
T PRK00312 82 VLEIGTGSGYQAAVLAHLVRRVFSVER--IKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI-- 157 (212)
T ss_pred EEEECCCccHHHHHHHHHhCEEEEEeC--CHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchhh--
Confidence 599999999999988877556666444 45555544332 33 566777654322245899999998765432
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
..++.+.|+|||
T Consensus 158 -------~~~l~~~L~~gG 169 (212)
T PRK00312 158 -------PRALLEQLKEGG 169 (212)
T ss_pred -------hHHHHHhcCCCc
Confidence 346789999999
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.7e-07 Score=86.24 Aligned_cols=89 Identities=24% Similarity=0.266 Sum_probs=65.8
Q ss_pred CceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 222 IRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+.+||||+|+|.++..++++ +.+++. +|+ +...+.+.+...+.++.++.- =|++. +|+|+..++||+|.++
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v--~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~ 174 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATV--FDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDE 174 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEE--EE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HH
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCccee--ecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcchH
Confidence 456799999999999999887 465543 443 334444444566888888865 45555 9999999999999876
Q ss_pred hhHHHHHHHHHhhhCCC--C
Q 017839 300 IMMEFLFYDVDRVLRGG--G 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPG--G 317 (365)
+ ....|+.+++.|+|| |
T Consensus 175 ~-~~~iL~~~~~al~pg~~g 193 (241)
T PF00891_consen 175 D-CVKILRNAAAALKPGKDG 193 (241)
T ss_dssp H-HHHHHHHHHHHSEECTTE
T ss_pred H-HHHHHHHHHHHhCCCCCC
Confidence 5 457999999999999 8
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.6e-06 Score=87.28 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=69.6
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCC--CCCCccceeEEcc-
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLP--LFDGVLDVVRCGH- 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LP--F~D~SFDlV~s~~- 291 (365)
.+||+|||+|.++..++++ +..|+++ |++..+.+.+. ..|. +.++.+++..++ ++ ++||+|++.-
T Consensus 253 ~VLDlgaG~G~~t~~la~~~~~~~~v~av--Di~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 253 TVLDACAAPGGKTTHIAELLKNTGKVVAL--DIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred EEEEeCCCCCHHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 4699999999999998875 3466654 44455554433 2343 567778877653 33 7899998631
Q ss_pred -----hhhc-----cc-Chhh-------HHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhhC-Cceee
Q 017839 292 -----AVNR-----WI-PVIM-------MEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLG-YKKVK 339 (365)
Q Consensus 292 -----~L~~-----w~-d~~~-------le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~g-fk~i~ 339 (365)
.+.+ |. ...+ ...+|.++.|+||||| ..++.+.+....+++.+ |+.+.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~ 405 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVP 405 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence 1111 11 0011 1357999999999999 22334444556667653 65543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.8e-07 Score=79.58 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=58.9
Q ss_pred eEEEEcCcccHHHHHHhhcCC--eEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI--TILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv--~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++++. +|+.+++ +..+.+.+.+ .+. +.++.++.-. +++++.||+|+|+--++
T Consensus 34 ~vLDlG~G~G~i~~~la~~~~~~~v~~vDi--~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~- 109 (170)
T PF05175_consen 34 RVLDLGCGSGVISLALAKRGPDAKVTAVDI--NPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH- 109 (170)
T ss_dssp EEEEETSTTSHHHHHHHHTSTCEEEEEEES--BHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB-
T ss_pred eEEEecCChHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh-
Confidence 359999999999999999864 4665544 4555554432 232 4456665422 23489999999986542
Q ss_pred ccCh---hhHHHHHHHHHhhhCCCC
Q 017839 296 WIPV---IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~---~~le~aL~Ei~RVLRPGG 317 (365)
.... ...+..+.+..+.|||||
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G 134 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGG 134 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCC
Confidence 2221 235678999999999999
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=78.21 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=55.6
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC-CCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR-LPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~-LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|.++..+++. +..|++++ .+..+.+.+.+ .+. +.++.+++.. ++.....+|.|+....
T Consensus 43 ~VLDiG~G~G~~~~~la~~~~~~~V~~vD--~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~-- 118 (196)
T PRK07402 43 VLWDIGAGTGTIPVEAGLLCPKGRVIAIE--RDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGG-- 118 (196)
T ss_pred EEEEeCCCCCHHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECC--
Confidence 4699999999999988764 45677644 44556554432 232 5567776643 3333345677654321
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..++.++.++.|+|+|||
T Consensus 119 -----~~~~~~l~~~~~~LkpgG 136 (196)
T PRK07402 119 -----RPIKEILQAVWQYLKPGG 136 (196)
T ss_pred -----cCHHHHHHHHHHhcCCCe
Confidence 124578999999999999
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-06 Score=81.51 Aligned_cols=134 Identities=14% Similarity=0.154 Sum_probs=85.7
Q ss_pred eEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHHHHc-------CCCcEEeccCCCCC--CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQQRLP--LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~ae~LP--F~D~SFDlV~s~~~ 292 (365)
.+||+|||+|..+..++++ . +.++++++ ++.+.++|.+. ..+.++.+|..++. +.-.+||+|+|+=-
T Consensus 47 ~IlDlGaG~G~l~L~la~r~~~a~I~~VEi--q~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 47 RILDLGAGNGALGLLLAQRTEKAKIVGVEI--QEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred eEEEecCCcCHHHHHHhccCCCCcEEEEEe--CHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 4599999999999999987 3 77776554 46666665431 23677888866542 34448999999753
Q ss_pred hh---------------cccChhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCceeeEE-eecCCCCCCC
Q 017839 293 VN---------------RWIPVIMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKVKWA-TANKPNSKNG 351 (365)
Q Consensus 293 L~---------------~w~d~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i~w~-v~~K~d~~~~ 351 (365)
.. ++.....++..++-..++||||| ...+.-..+..++++++|.-.+-. |-.|.++.-.
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~ 204 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYPKIGKAAN 204 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEecCCCCCcce
Confidence 21 12222346677888899999999 444433336667777777543333 5555554444
Q ss_pred ceEEEEee
Q 017839 352 EVYLTALL 359 (365)
Q Consensus 352 ~~y~sall 359 (365)
-|-++|+.
T Consensus 205 ~vLv~~~k 212 (248)
T COG4123 205 RVLVEAIK 212 (248)
T ss_pred EEEEEEec
Confidence 45555543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=67.05 Aligned_cols=87 Identities=29% Similarity=0.371 Sum_probs=58.5
Q ss_pred EEEEcCcccHHH--HHHhhcCCeEEEeccCCChhHHHHHHHcC----C--CcEEeccCCC--CCCCC-CccceeEEcchh
Q 017839 225 GIDVGGATGSFA--ARMKLYNITILTTTMNLGAPYSEAAALRG----L--VPLHVPLQQR--LPLFD-GVLDVVRCGHAV 293 (365)
Q Consensus 225 ~LDIGCGtG~fa--a~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg----~--v~~~~g~ae~--LPF~D-~SFDlV~s~~~L 293 (365)
+||+|||+|... ..+...+..+++ +|....+.+....+. . +.+..++... +||.+ ..||++ +....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG--VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE--EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 599999999954 333333345665 455555544432221 1 3566666554 89998 599999 76666
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++.+ ....+.++.|+|+|||
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g 149 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGG 149 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCc
Confidence 56654 4579999999999999
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.4e-06 Score=80.14 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=66.7
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCCCCccceeEE----c
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLFDGVLDVVRC----G 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~D~SFDlV~s----~ 290 (365)
.|||+|||+|..+..+++. ...|++. |.+..+.+.+. ..|. +.++.+++..++...+.||.|++ +
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~--D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGAIVAN--EFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCEEEEE--cCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 3599999999999888774 2366654 44555554433 2343 45666787777777778999985 2
Q ss_pred c--hhh-------cccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHh
Q 017839 291 H--AVN-------RWIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGK 332 (365)
Q Consensus 291 ~--~L~-------~w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~ 332 (365)
. ++. .|.+. .....+|.++.+.||||| ..++.+++...++++
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 1 111 12111 012358999999999999 233334444455554
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.9e-06 Score=85.68 Aligned_cols=108 Identities=9% Similarity=0.059 Sum_probs=66.0
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH----HcCC-CcE--EeccCCCCCC--CCCccceeEE---
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA----LRGL-VPL--HVPLQQRLPL--FDGVLDVVRC--- 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~----~Rg~-v~~--~~g~ae~LPF--~D~SFDlV~s--- 289 (365)
.|||+|||+|..+..+++. +..|++. |.+..+.+.+. ..|. +.+ ..+++..+++ .+++||.|++
T Consensus 241 ~VLDlcag~G~kt~~la~~~~~~~v~a~--D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 241 TILDACAAPGGKTTHILELAPQAQVVAL--DIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred eEEEeCCCccHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 4599999999999998875 2566654 44455554433 2243 122 3455555555 6788999984
Q ss_pred -c--chhhcccC------hh-------hHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh
Q 017839 290 -G--HAVNRWIP------VI-------MMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL 333 (365)
Q Consensus 290 -~--~~L~~w~d------~~-------~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~ 333 (365)
+ .++++..+ .. ....+|.++.|+||||| ..++.+++....+++.
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 2 23332211 00 12468999999999999 2234444455566655
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=85.30 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=66.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHH----HHHcCCC-cEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEA----AALRGLV-PLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~----a~~Rg~v-~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||||-++...+..|+ .|+++++|. ...+. +...|+- .+..... ..+....||+|+++-...
T Consensus 164 ~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~~N~~~N~~~~~~~v~~~--~~~~~~~~dlvvANI~~~--- 236 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAARENAELNGVEDRIEVSLS--EDLVEGKFDLVVANILAD--- 236 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHHHHHHHTT-TTCEEESCT--SCTCCS-EEEEEEES-HH---
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHHHHHHHcCCCeeEEEEEe--cccccccCCEEEECCCHH---
Confidence 569999999999999888885 577777763 23332 3334432 2322222 233459999999976442
Q ss_pred ChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeE
Q 017839 298 PVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w 340 (365)
.+...+.++.++|+||| ..++.++ ..+.+++ ||+.++.
T Consensus 237 ---vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~-v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 237 ---VLLELAPDIASLLKPGGYLILSGILEEQEDE-VIEAYKQ-GFELVEE 281 (295)
T ss_dssp ---HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHH-HHHHHHT-TEEEEEE
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEccccHHHHHH-HHHHHHC-CCEEEEE
Confidence 23457788999999999 3344443 5556676 8886643
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=89.38 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=70.0
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcc---
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGH--- 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~--- 291 (365)
.+||+|||+|.++..++.. +..|+++++ +..+.+.+.+ .+ .+.++.++... +++++.||+|+|+-
T Consensus 141 ~VLDlG~GsG~iai~la~~~p~~~v~avDi--s~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 141 NILELGTGSGCIAISLLCELPNANVIATDI--SLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred EEEEccCchhHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 4699999999999988764 467776544 4555554433 23 25566666422 33467899999942
Q ss_pred -----------hhhccc------Ch---hhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCcee
Q 017839 292 -----------AVNRWI------PV---IMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 292 -----------~L~~w~------d~---~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i 338 (365)
++.+.+ .. +.....+.++.++|+||| .+....+...+++.+.||+.+
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIE 289 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCce
Confidence 111110 01 123446788999999999 222223346678888898754
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.5e-06 Score=83.90 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=67.4
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcc---
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGH--- 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~--- 291 (365)
.+||+|||+|.++..++.+ +..|++++ ++..+.+.+.+ .+. +.++.++... ++++++||+|+++=
T Consensus 136 ~VLDlG~GsG~iai~la~~~p~~~V~avD--is~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 136 RILDLCTGSGCIAIACAYAFPDAEVDAVD--ISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred EEEEEechhhHHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 4699999999999999876 46777654 44556554432 232 6677777532 23467899999861
Q ss_pred ------hhh---cccCh----------hhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCC
Q 017839 292 ------AVN---RWIPV----------IMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGY 335 (365)
Q Consensus 292 ------~L~---~w~d~----------~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gf 335 (365)
.+. ++.+. +..+..+.++.++|+||| .+....+ ...++...||
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~~-~~~~~~~~~~ 279 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRVH-LEEAYPDVPF 279 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCHHH-HHHHHhhCCC
Confidence 000 11111 123567899999999999 2222222 4456666554
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-06 Score=75.41 Aligned_cols=68 Identities=6% Similarity=-0.011 Sum_probs=53.2
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..+++++..++++++| ..+.+.+.++ +.+.++.+++.+++++++.||.|+++--+
T Consensus 16 ~vLEiG~G~G~lt~~l~~~~~~v~~vE~~--~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py 87 (169)
T smart00650 16 TVLEIGPGKGALTEELLERAARVTAIEID--PRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY 87 (169)
T ss_pred EEEEECCCccHHHHHHHhcCCeEEEEECC--HHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc
Confidence 46999999999999999987777765554 5565555443 24678889999999998889999987654
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=77.15 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=80.3
Q ss_pred cCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHH----HcCCC
Q 017839 194 SSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAA----LRGLV 267 (365)
Q Consensus 194 ~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~----~Rg~v 267 (365)
....+.|+.+++.+++.++...+. .+. .+||||||+|..|..++.++ .+|++++++ ....+.|. ..|..
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~-~~~--~ilDlGTGSG~iai~la~~~~~~~V~a~Dis--~~Al~~A~~Na~~~~l~ 160 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQ-LDK--RILDLGTGSGAIAIALAKEGPDAEVIAVDIS--PDALALARENAERNGLV 160 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhh-cCC--cEEEecCChHHHHHHHHhhCcCCeEEEEECC--HHHHHHHHHHHHHcCCc
Confidence 334455666777777776632221 122 35999999999999999876 478876665 44444432 23433
Q ss_pred cEEeccCCCCCCCCCccceeEEcchh--h-----------c------ccC---hhhHHHHHHHHHhhhCCCC-----Ccc
Q 017839 268 PLHVPLQQRLPLFDGVLDVVRCGHAV--N-----------R------WIP---VIMMEFLFYDVDRVLRGGG-----KAS 320 (365)
Q Consensus 268 ~~~~g~ae~LPF~D~SFDlV~s~~~L--~-----------~------w~d---~~~le~aL~Ei~RVLRPGG-----~~~ 320 (365)
.+......-+.=-.+.||+|+|+==. . + |.. .+..+..+.++.+.|+||| .+.
T Consensus 161 ~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 161 RVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred cEEEEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 32222111111112389999986411 0 0 000 1234567889999999999 332
Q ss_pred hhhhhHHHHHHhhCC
Q 017839 321 DLENVYGPLIGKLGY 335 (365)
Q Consensus 321 ~l~~~~~~~l~~~gf 335 (365)
...+...+++.+.||
T Consensus 241 ~q~~~v~~~~~~~~~ 255 (280)
T COG2890 241 TQGEAVKALFEDTGF 255 (280)
T ss_pred CcHHHHHHHHHhcCC
Confidence 223346779999996
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.1e-06 Score=77.51 Aligned_cols=91 Identities=8% Similarity=-0.154 Sum_probs=69.6
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH-----------------c-CCCcEEeccCCCCCCC---C
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL-----------------R-GLVPLHVPLQQRLPLF---D 281 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~-----------------R-g~v~~~~g~ae~LPF~---D 281 (365)
|+ |+.|||.|.-+..|+++|..|++++++ +...+.+.+ + +.+.++++|.-.|+.. -
T Consensus 46 rv-LvPgCGkg~D~~~LA~~G~~V~GvDlS--~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 46 VC-LIPMCGCSIDMLFFLSKGVKVIGIELS--EKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred eE-EEeCCCChHHHHHHHhCCCcEEEEecC--HHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 54 999999999999999999999986554 434333221 1 2367888888778642 2
Q ss_pred CccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 282 GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 282 ~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.||+|+=..++.++.+ +......+-+.++|+|||
T Consensus 123 ~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg 157 (226)
T PRK13256 123 PVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNT 157 (226)
T ss_pred CCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCc
Confidence 68999998888877754 556789999999999999
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.7e-06 Score=82.80 Aligned_cols=83 Identities=20% Similarity=0.073 Sum_probs=58.6
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.+++.+++.. ..|+++ |.+..+.+.+++ .|. +.++.+++...+...+.||+|++...+.
T Consensus 83 ~VLDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 83 RVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVD 160 (322)
T ss_pred EEEEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchH
Confidence 45999999999999998752 246654 444566554433 243 4567788777666667899999987654
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. ...+.++|||||
T Consensus 161 ~i---------p~~~~~~LkpgG 174 (322)
T PRK13943 161 EV---------PETWFTQLKEGG 174 (322)
T ss_pred Hh---------HHHHHHhcCCCC
Confidence 32 235788999999
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-05 Score=73.28 Aligned_cols=92 Identities=23% Similarity=0.306 Sum_probs=61.7
Q ss_pred EEEEcCcccHHHHHHhhc--CCeEEEeccCCCh--hHHHHHHHcCC----CcEEeccCCC-CC------CCCCccceeEE
Q 017839 225 GIDVGGATGSFAARMKLY--NITILTTTMNLGA--PYSEAAALRGL----VPLHVPLQQR-LP------LFDGVLDVVRC 289 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~--~~~e~a~~Rg~----v~~~~g~ae~-LP------F~D~SFDlV~s 289 (365)
||+||||||.-+.+++++ .++--.+++|... ...+.+.+.+. .|+.....+. -| +..++||+|+|
T Consensus 29 vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~ 108 (204)
T PF06080_consen 29 VLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFC 108 (204)
T ss_pred EEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeee
Confidence 599999999999999886 3443344554321 22233444443 2343322221 22 35679999999
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..++ |..+-...+..+.++.|+|+|||
T Consensus 109 ~N~l-HI~p~~~~~~lf~~a~~~L~~gG 135 (204)
T PF06080_consen 109 INML-HISPWSAVEGLFAGAARLLKPGG 135 (204)
T ss_pred hhHH-HhcCHHHHHHHHHHHHHhCCCCC
Confidence 9998 56666667789999999999999
|
The function of this family is unknown. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-06 Score=78.43 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=59.8
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHH----HHHHHcCC--CcEEeccCCC-CC--CCCCccceeEEcc
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYS----EAAALRGL--VPLHVPLQQR-LP--LFDGVLDVVRCGH 291 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~----e~a~~Rg~--v~~~~g~ae~-LP--F~D~SFDlV~s~~ 291 (365)
.+.||||||.|.|...+|+. +..++|+++. .... +.+..+++ +.++.+++.. |+ |+++++|.|+..+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~--~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIR--KKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES---HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecc--hHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 36799999999999999987 4777876543 2222 23344454 5567777766 32 5689999999877
Q ss_pred hhhcccChh------hHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVI------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~------~le~aL~Ei~RVLRPGG 317 (365)
- ..|.... --...+.++.|+|+|||
T Consensus 97 P-DPWpK~rH~krRl~~~~fl~~~~~~L~~gG 127 (195)
T PF02390_consen 97 P-DPWPKKRHHKRRLVNPEFLELLARVLKPGG 127 (195)
T ss_dssp ------SGGGGGGSTTSHHHHHHHHHHEEEEE
T ss_pred C-CCCcccchhhhhcCCchHHHHHHHHcCCCC
Confidence 4 2454211 01258999999999999
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.4e-06 Score=84.61 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=70.3
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCC-CCCCccceeEE----
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLP-LFDGVLDVVRC---- 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LP-F~D~SFDlV~s---- 289 (365)
.|||+|||+|..+..+++. +..|++. |++..+.+.+. ..|. +.+..+++..++ +.+++||.|.+
T Consensus 240 ~VLD~cagpGgkt~~la~~~~~~g~V~a~--Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMKDQGKILAV--DISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 3599999999999888875 3567764 44556655443 2343 457778888887 66889999985
Q ss_pred c-c-hhhc-------ccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCc
Q 017839 290 G-H-AVNR-------WIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYK 336 (365)
Q Consensus 290 ~-~-~L~~-------w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk 336 (365)
+ . ++.. |... ......|.++.++||||| ..++.+++....+++. +|+
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~ 389 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAE 389 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcE
Confidence 2 1 1211 1100 012456889999999999 3344455455555543 444
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.9e-05 Score=71.86 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=71.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCC-CCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQ-RLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae-~LPF~D~SFDlV~s~~~L~ 294 (365)
+++|||||||+.+..++.. ..+|++ +|.++...+.+. +-|. +.++.|++- .|+=.+ +||.|+.... .
T Consensus 37 ~l~DIGaGtGsi~iE~a~~~p~~~v~A--Ie~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg-~ 112 (187)
T COG2242 37 RLWDIGAGTGSITIEWALAGPSGRVIA--IERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG-G 112 (187)
T ss_pred EEEEeCCCccHHHHHHHHhCCCceEEE--EecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-C
Confidence 4599999999999999843 356665 443344443332 2242 346667653 355222 8999999887 2
Q ss_pred cccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCC-ceeeEE--eecCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGY-KKVKWA--TANKPN 347 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gf-k~i~w~--v~~K~d 347 (365)
+ ++..|.....-||||| ..-+......+.+++.|| +.++.. .++++.
T Consensus 113 ~------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~lg 168 (187)
T COG2242 113 N------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQISRGKPLG 168 (187)
T ss_pred C------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEeecceecc
Confidence 3 3468888999999999 112222234578899999 444433 444443
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.8e-06 Score=80.87 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=61.6
Q ss_pred ceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHc-----------CCCcEEeccCCC-CCCCCCccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAALR-----------GLVPLHVPLQQR-LPLFDGVLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~R-----------g~v~~~~g~ae~-LPF~D~SFDlV~ 288 (365)
+.+||||||+|.++..+.++ ++ .|+.+++| +.+.+.+.+. ..+.++.+|+.. ++..+++||+|+
T Consensus 78 ~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid--~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 78 KRVLIIGGGDGGTLREVLKHPSVEKITLVEID--ERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CEEEEEecCchHHHHHHHcCCCCCEEEEEeCC--HHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 34699999999999999886 43 56554554 5565554331 235677777654 444678999999
Q ss_pred EcchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
+-.. .++.+... .+.++.++.|+|+|||
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gG 185 (283)
T PRK00811 156 VDST-DPVGPAEGLFTKEFYENCKRALKEDG 185 (283)
T ss_pred ECCC-CCCCchhhhhHHHHHHHHHHhcCCCc
Confidence 8543 23332211 1457889999999999
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.3e-05 Score=79.28 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=76.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCC----CCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQ----RLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae----~LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..|++.+..|++++ .+..+.+.+.+ .|. +.++.+++. .+++.+++||+|++.--.
T Consensus 300 ~VLDlgcGtG~~sl~la~~~~~V~gvD--~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr 377 (443)
T PRK13168 300 RVLDLFCGLGNFTLPLARQAAEVVGVE--GVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPR 377 (443)
T ss_pred EEEEEeccCCHHHHHHHHhCCEEEEEe--CCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCC
Confidence 469999999999999998887787654 45666655433 232 567888764 356778899999874321
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeec
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQK 361 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~K 361 (365)
..+...+..+.+ ++|++ .-..+.++.. .+...||+..+ ...--..+....+=.-|+|+|
T Consensus 378 ------~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~-~L~~~gY~l~~-i~~~DmFP~T~HvE~v~lL~r 442 (443)
T PRK13168 378 ------AGAAEVMQALAK-LGPKRIVYVSCNPATLARDAG-VLVEAGYRLKR-AGMLDMFPHTGHVESMALFER 442 (443)
T ss_pred ------cChHHHHHHHHh-cCCCeEEEEEeChHHhhccHH-HHhhCCcEEEE-EEEeccCCCCCcEEEEEEEEe
Confidence 112234444444 68888 2222222233 34466897543 333333344444445566665
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-06 Score=85.68 Aligned_cols=90 Identities=20% Similarity=0.196 Sum_probs=64.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
++||+|||-|.....= -..-+++.++. .....-+...|......+++-.+||.+.+||.+.+..+++||......+
T Consensus 48 v~~d~gCGngky~~~~--p~~~~ig~D~c--~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~ 123 (293)
T KOG1331|consen 48 VGLDVGCGNGKYLGVN--PLCLIIGCDLC--TGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRE 123 (293)
T ss_pred eeeecccCCcccCcCC--Ccceeeecchh--hhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHH
Confidence 5799999999743211 12344554332 1111112222332577889999999999999999999999998776677
Q ss_pred HHHHHHHhhhCCCC
Q 017839 304 FLFYDVDRVLRGGG 317 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG 317 (365)
.++.|+.|+|||||
T Consensus 124 ~~l~e~~r~lrpgg 137 (293)
T KOG1331|consen 124 RALEELLRVLRPGG 137 (293)
T ss_pred HHHHHHHHHhcCCC
Confidence 89999999999999
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.4e-06 Score=76.40 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=86.0
Q ss_pred ccccCceecccCCccchHHHHhhhcc----ccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHH---HHH
Q 017839 191 SEKSSSFLAFKSELDLPVTQFLDLAK----AANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEA---AAL 263 (365)
Q Consensus 191 ~~e~~~W~~~~g~~~f~I~~vL~~~p----~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~---a~~ 263 (365)
+.+++-|+.... .+-.++.+++... ..+.. | |||+|||.|.+...|++.|..---+++|++....+. +++
T Consensus 36 gd~GEvWFg~~a-e~riv~wl~d~~~~~rv~~~A~-~-VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe 112 (227)
T KOG1271|consen 36 GDEGEVWFGEDA-EERIVDWLKDLIVISRVSKQAD-R-VLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAE 112 (227)
T ss_pred CCccceecCCcH-HHHHHHHHHhhhhhhhhccccc-c-eeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHH
Confidence 568888987542 1223333333221 11121 4 499999999999999998744311235555555443 344
Q ss_pred c-CC---CcEEeccCCCCCCCCCccceeEEcchhhc--cc---ChhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHH
Q 017839 264 R-GL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNR--WI---PVIMMEFLFYDVDRVLRGGG-----KASDLENVYGPL 329 (365)
Q Consensus 264 R-g~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~--w~---d~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~ 329 (365)
| |. +.|.+.+...--|..+.||+|+=-..+.- .. ....+...+--+.+.|+||| .-+-..+.+...
T Consensus 113 ~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~ 192 (227)
T KOG1271|consen 113 RDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE 192 (227)
T ss_pred hcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence 4 32 66888877666889999999994443321 11 11222346778899999999 111112224447
Q ss_pred HHhhCCceee
Q 017839 330 IGKLGYKKVK 339 (365)
Q Consensus 330 l~~~gfk~i~ 339 (365)
++..||+.++
T Consensus 193 f~~~~f~~~~ 202 (227)
T KOG1271|consen 193 FENFNFEYLS 202 (227)
T ss_pred HhcCCeEEEE
Confidence 7887776654
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=78.88 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=65.5
Q ss_pred CCCceEEEEcCccc----HHHHHHhhc------CCeEEEeccCCChhHHHHHHH--------------------------
Q 017839 220 SVIRLGIDVGGATG----SFAARMKLY------NITILTTTMNLGAPYSEAAAL-------------------------- 263 (365)
Q Consensus 220 g~iRi~LDIGCGtG----~faa~Lae~------gv~Vv~~~ldl~~~~~e~a~~-------------------------- 263 (365)
+.+|| ...||.|| ++|..+.+. .+.|+++++| ....+.|++
T Consensus 115 ~~irI-WSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs--~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~ 191 (287)
T PRK10611 115 GEYRV-WSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDID--TEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGP 191 (287)
T ss_pred CCEEE-EEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECC--HHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCC
Confidence 45887 99999999 467666663 3678887765 344433321
Q ss_pred -----------cCCCcEEeccCCCCCCC-CCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 264 -----------RGLVPLHVPLQQRLPLF-DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 264 -----------Rg~v~~~~g~ae~LPF~-D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|..|.|...+....||+ .+.||+|+|..++.++.+ +..+.++..+++.|+|||
T Consensus 192 ~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 192 HEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDG 256 (287)
T ss_pred CCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCc
Confidence 01234444554444543 689999999999988754 456789999999999999
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=76.81 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=50.9
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
..+||||||+|.++..|++++..++++++| ..+.+.+.++ +.+.++.+|+..+++++ ||.|+++.-.
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~~v~~vEid--~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~--~d~Vv~NlPy 101 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAKKVYAIELD--PRLAEFLRDDEIAAGNVEIIEGDALKVDLPE--FNKVVSNLPY 101 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCCEEEEEECC--HHHHHHHHHHhccCCCEEEEEeccccCCchh--ceEEEEcCCc
Confidence 356999999999999999988777765554 5566555432 34678889998888764 8999998654
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-05 Score=74.73 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=56.6
Q ss_pred EEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHH----HcCCC--cEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 225 GIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAA----LRGLV--PLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~----~Rg~v--~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
+||+|||.|.++..|++++ ..+.-++. +....+.++ ..+.- .++.++ --.+-.+ +||+|+|+=-+|.-
T Consensus 162 vlDlGCG~Gvlg~~la~~~p~~~vtmvDv--n~~Av~~ar~Nl~~N~~~~~~v~~s~-~~~~v~~-kfd~IisNPPfh~G 237 (300)
T COG2813 162 VLDLGCGYGVLGLVLAKKSPQAKLTLVDV--NARAVESARKNLAANGVENTEVWASN-LYEPVEG-KFDLIISNPPFHAG 237 (300)
T ss_pred EEEeCCCccHHHHHHHHhCCCCeEEEEec--CHHHHHHHHHhHHHcCCCccEEEEec-ccccccc-cccEEEeCCCccCC
Confidence 4999999999999999985 34332233 334444332 22322 234443 3344455 99999999877532
Q ss_pred cC--hhhHHHHHHHHHhhhCCCC
Q 017839 297 IP--VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d--~~~le~aL~Ei~RVLRPGG 317 (365)
.+ ....+..+.+..+.|++||
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gG 260 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGG 260 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCC
Confidence 21 1123468999999999999
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.7e-05 Score=74.97 Aligned_cols=122 Identities=12% Similarity=0.143 Sum_probs=75.5
Q ss_pred CceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH-----cC-CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 222 IRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL-----RG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~-----Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
...+||.|+|.|..+..+.-.-...+.. ++..+.+.+.+.+ .+ +..++....|.+--..+.+|+|++-+|+-|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDl-VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDL-VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEE-EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEE-eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4567999999999998775432222221 2334566666653 12 234566666776545789999999999999
Q ss_pred ccChhhHHHHHHHHHhhhCCCC----------Ccc-hh----------hhhHHHHHHhhCCceeeEEeecC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG----------KAS-DL----------ENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG----------~~~-~l----------~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
..|+ ++-.+|+-....|+||| .+. .. .+.|..+|+++|++.++-..-+-
T Consensus 135 LTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 135 LTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp S-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred CCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 8865 46679999999999999 111 11 23588999999999887655443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.4e-05 Score=79.15 Aligned_cols=113 Identities=17% Similarity=0.176 Sum_probs=70.1
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH--------c-----CCCcEEeccCCC-CCCCCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL--------R-----GLVPLHVPLQQR-LPLFDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~--------R-----g~v~~~~g~ae~-LPF~D~SFDl 286 (365)
+.||+||||+|..+..+.+.. ..|+.++ +++.+.+.+.. + ..+.++.+|+.+ ++-.++.||+
T Consensus 152 krVLIIGgGdG~tlrelLk~~~v~~It~VE--IDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 152 KRVLILGGGDGLALREVLKYETVLHVDLVD--LDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEEe--CCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 456999999999988888764 3555444 44677776653 1 135567777654 4555778999
Q ss_pred eEEcchhhcccC---hhhHHHHHHHHHhhhCCCC-----Cc-ch-hhh---hHHHHHHhhCCcee
Q 017839 287 VRCGHAVNRWIP---VIMMEFLFYDVDRVLRGGG-----KA-SD-LEN---VYGPLIGKLGYKKV 338 (365)
Q Consensus 287 V~s~~~L~~w~d---~~~le~aL~Ei~RVLRPGG-----~~-~~-l~~---~~~~~l~~~gfk~i 338 (365)
|++... ..... .---..++..+.|.|+||| .. .. ..+ .....+++.|+...
T Consensus 230 IIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 230 IIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred EEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE
Confidence 998632 11110 0011347899999999999 11 11 111 13467788887554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=82.69 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=70.7
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc-------------CCCcEEeccCCC-CCCCCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR-------------GLVPLHVPLQQR-LPLFDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R-------------g~v~~~~g~ae~-LPF~D~SFDl 286 (365)
+.+||||||+|..+..+.+++ .+++.+++ ++.+.+.+++. ..+.++.+|+.+ +...+++||+
T Consensus 299 ~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEi--d~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 299 RRVLVLGGGDGLALREVLKYPDVEQVTLVDL--DPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CeEEEEcCCccHHHHHHHhCCCcCeEEEEEC--CHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 346999999999999988774 35665444 46677766541 135567777654 3444679999
Q ss_pred eEEcchhhcccChh---hHHHHHHHHHhhhCCCC-----C-----cchhhhhHHHHHHhhCC
Q 017839 287 VRCGHAVNRWIPVI---MMEFLFYDVDRVLRGGG-----K-----ASDLENVYGPLIGKLGY 335 (365)
Q Consensus 287 V~s~~~L~~w~d~~---~le~aL~Ei~RVLRPGG-----~-----~~~l~~~~~~~l~~~gf 335 (365)
|++...- .+.+.. --+.+++++.|.||||| . ..+.-....+.+++.||
T Consensus 377 Ii~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 377 IIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 9987432 222110 01247889999999999 1 11111235667888888
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.2e-05 Score=77.29 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=59.7
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-------CCCcEEeccCCC-CCCCCCccceeEEcch
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQQR-LPLFDGVLDVVRCGHA 292 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~ae~-LPF~D~SFDlV~s~~~ 292 (365)
+.+||||||+|.++..++++ +..++++++| +.+.+.+.+. ..+.++.+|+.. ++-..++||+|++..
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid--p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN--PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 34599999999999999875 3566654554 5666655542 225567777543 333346899999742
Q ss_pred hh--cccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VN--RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~--~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. .....-....++.++.++|+|||
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgG 171 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDG 171 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCc
Confidence 21 11110112468999999999999
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.8e-05 Score=70.86 Aligned_cols=135 Identities=19% Similarity=0.259 Sum_probs=70.0
Q ss_pred CCCceEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHcCCCcEEecc----CCCCCCCCCccceeEEcch
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALRGLVPLHVPL----QQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~----ae~LPF~D~SFDlV~s~~~ 292 (365)
+...++||+||++|.|+..+.+++ ..|+++++....+....-.-+|-+ ..... .+.++=....||+|+|-.+
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~-~~~~~~~~i~~~~~~~~~~~dlv~~D~~ 100 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDI-TNPENIKDIRKLLPESGEKFDLVLSDMA 100 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGG-EEEEHSHHGGGSHGTTTCSESEEEE---
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeeccc-chhhHHHhhhhhccccccCcceeccccc
Confidence 334567999999999999999987 667766554221110000001111 11011 1112212279999998763
Q ss_pred hh--------cccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEE
Q 017839 293 VN--------RWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTA 357 (365)
Q Consensus 293 L~--------~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sa 357 (365)
.. ++........++.=+.+.||||| ...+.. .+...+++ .|+++++.--....++.+|.|+-+
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~-~~~~~l~~-~F~~v~~~Kp~~sr~~s~E~Ylv~ 178 (181)
T PF01728_consen 101 PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIE-ELIYLLKR-CFSKVKIVKPPSSRSESSEEYLVC 178 (181)
T ss_dssp ----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSH-HHHHHHHH-HHHHEEEEE-TTSBTTCBEEEEES
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHH-HHHHHHHh-CCeEEEEEECcCCCCCccEEEEEE
Confidence 21 11111122234444557899999 333333 34444444 577787775555545789999854
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.2e-05 Score=75.60 Aligned_cols=67 Identities=7% Similarity=0.000 Sum_probs=50.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc---CCCcEEeccCCCCCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR---GLVPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R---g~v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
.+||||||+|.++..+++++..++++++| ..+.+.+.++ ..+.++.+|+..+++++-.+|.|+++--
T Consensus 45 ~VLEiG~G~G~lt~~L~~~~~~v~avE~d--~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 45 NVLEIGPGLGALTEPLLERAAKVTAVEID--RDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred eEEEeCCCccHHHHHHHHhCCcEEEEECC--HHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 46999999999999999987777765554 5676665543 3467888999999887644688887653
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.2e-05 Score=74.47 Aligned_cols=86 Identities=15% Similarity=0.037 Sum_probs=56.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCC-CCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPL-FDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF-~D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++..+++++..|+++++ +..+.+.+. ..|+ +.++.+++..+.. .++.||+|++.=
T Consensus 176 ~VLDl~cG~G~~sl~la~~~~~V~gvD~--s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP----- 248 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCATPGMQLTGIEI--SAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP----- 248 (315)
T ss_pred EEEEccCCCCHHHHHHHhcCCEEEEEeC--CHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC-----
Confidence 4699999999999999998888887554 456655443 2343 5688888876543 356899999762
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
+...+...+.++..-++|++
T Consensus 249 -Pr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 249 -PRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred -CCCCccHHHHHHHHHcCCCe
Confidence 22222223334444466766
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.3e-05 Score=80.05 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=63.8
Q ss_pred ceEEEEcCcccHHHHHHhhcC-CeEEEeccCCChh-HHHHHHHcC---CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 223 RLGIDVGGATGSFAARMKLYN-ITILTTTMNLGAP-YSEAAALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~-~~e~a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
++|||||||||.++..-++.| ..|.+++.+--+. ..+.+...+ ++.++.|.++.+-.|-...|+|++-+.-+...
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll 141 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLL 141 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHH
Confidence 578999999999998888888 4555543321111 122333344 36777787776544488999999877543322
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
-...++..|..=+|-|+|||
T Consensus 142 ~EsMldsVl~ARdkwL~~~G 161 (346)
T KOG1499|consen 142 YESMLDSVLYARDKWLKEGG 161 (346)
T ss_pred HhhhhhhhhhhhhhccCCCc
Confidence 23456677888899999999
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.7e-05 Score=71.78 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=54.2
Q ss_pred cchHHHHhhhcc-ccCCCCceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHH-HHHcCCCc-EEeccCCC----
Q 017839 205 DLPVTQFLDLAK-AANSVIRLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEA-AALRGLVP-LHVPLQQR---- 276 (365)
Q Consensus 205 ~f~I~~vL~~~p-~~~g~iRi~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~-a~~Rg~v~-~~~g~ae~---- 276 (365)
.+-+..++...+ ...| +++||+|||||.|+..++++|+ .|++ +|.+..|... ..+...+. +...+...
T Consensus 60 ~~kL~~~l~~~~~~~~~--~~vlDiG~gtG~~t~~l~~~ga~~v~a--vD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~ 135 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKN--KIVLDVGSSTGGFTDCALQKGAKEVYG--VDVGYNQLAEKLRQDERVKVLERTNIRYVTPA 135 (228)
T ss_pred HHHHHHHHHhcCCCCCC--CEEEEcccCCCHHHHHHHHcCCCEEEE--EeCCHHHHHHHHhcCCCeeEeecCCcccCCHh
Confidence 344555555322 1123 4679999999999999999975 4665 4554434332 22222221 22223332
Q ss_pred -CCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 277 -LPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 277 -LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++..-..||+++++..+ .+..+.+.|+| |
T Consensus 136 ~~~~d~~~~DvsfiS~~~-----------~l~~i~~~l~~-~ 165 (228)
T TIGR00478 136 DIFPDFATFDVSFISLIS-----------ILPELDLLLNP-N 165 (228)
T ss_pred HcCCCceeeeEEEeehHh-----------HHHHHHHHhCc-C
Confidence 33222478888777653 24466777777 6
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.7e-05 Score=73.70 Aligned_cols=90 Identities=11% Similarity=0.078 Sum_probs=60.1
Q ss_pred EEEEcCcccHHHHHHhhc-----CCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcchhhccc-
Q 017839 225 GIDVGGATGSFAARMKLY-----NITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI- 297 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~-----gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~- 297 (365)
|||+|||+|.++..++++ ...|.++++| ..+.+.+.+. ..+.++.++....++ +++||+|+++==+....
T Consensus 53 VLDlG~GSG~Lalala~~~~~~~~~~V~aVEID--~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 53 VVDLCAGIGGLSFAMVHMMMYAKPREIVCVELN--HTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKT 129 (241)
T ss_pred EEEccChHHHHHHHHHHhcccCCCcEEEEEECC--HHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccc
Confidence 499999999999988764 3566665554 5555555432 125788888876665 67999999985432111
Q ss_pred -C-------hhhHHHHHHHHHhhhCCCC
Q 017839 298 -P-------VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 -d-------~~~le~aL~Ei~RVLRPGG 317 (365)
+ ......++....|.++||+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 1 0113347778889888888
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.1e-06 Score=82.49 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=64.5
Q ss_pred EEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHH--HHHHH---cCCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYS--EAAAL---RGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~--e~a~~---Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
++|+|||.|....+++... ..+++.+.+.-.-.. +.... .....++.++....||+|++||.|.+..+..|-.+
T Consensus 114 ~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~ 193 (364)
T KOG1269|consen 114 VLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPD 193 (364)
T ss_pred ccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCc
Confidence 3999999999998888753 555554333110000 11111 12234577788999999999999999999988664
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
...++.|++||++|||
T Consensus 194 ---~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 194 ---LEKVYAEIYRVLKPGG 209 (364)
T ss_pred ---HHHHHHHHhcccCCCc
Confidence 4579999999999999
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.3e-05 Score=75.02 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=52.4
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC-CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR-LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~-LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.+++.|+.. | ..|++++.+ +...+.+++ .+. +.+..+++.. +| ....||.|++..+.
T Consensus 75 ~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~--~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 75 RVLEIGTGSGYQAALLAHLVGPVGRVVSVERD--PELAERARRNLARLGIDNVEVVVGDGSEGWP-EEAPFDRIIVTAAV 151 (209)
T ss_dssp EEEEES-TTSHHHHHHHHHHSTTEEEEEEESB--HHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-GG-SEEEEEESSBB
T ss_pred EEEEecCCCcHHHHHHHHhcCccceEEEECcc--HHHHHHHHHHHHHhccCceeEEEcchhhccc-cCCCcCEEEEeecc
Confidence 3599999999999999875 3 246654443 444444332 243 5677777543 33 45679999998876
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.... .++.+-||+||
T Consensus 152 ~~ip---------~~l~~qL~~gG 166 (209)
T PF01135_consen 152 PEIP---------EALLEQLKPGG 166 (209)
T ss_dssp SS-----------HHHHHTEEEEE
T ss_pred chHH---------HHHHHhcCCCc
Confidence 4321 35778899999
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.6e-05 Score=70.51 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=48.6
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccc---eeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLD---VVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFD---lV~s~~~L 293 (365)
..+||||||+|.++..|++++..+++.+.| ..+.+.+.++ +.+.++.+|+..+|++ .|| +|+++--+
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d--~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRAKKVTAIEID--PRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLPY 104 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCcEEEEECC--HHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCCh
Confidence 356999999999999999988777765554 5565555432 3456788899888876 566 77776543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.6e-05 Score=72.45 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=63.0
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCC--ChhHHHHHHHcCC--CcEEeccCCCC-C--CCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNL--GAPYSEAAALRGL--VPLHVPLQQRL-P--LFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl--~~~~~e~a~~Rg~--v~~~~g~ae~L-P--F~D~SFDlV~s~~~L 293 (365)
.|+||||||.|.|...||+++ ...+|+++-. -+...+.+.+.|+ +.++.+||..+ + +++++.|-|+..+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 367999999999999999985 4556644321 1122344555565 45566676543 2 46679999998875
Q ss_pred hcccChh------hHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVI------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~------~le~aL~Ei~RVLRPGG 317 (365)
+.|.-.. --...+.++.|+|||||
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG 158 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGG 158 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCC
Confidence 3555211 11258999999999999
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.7e-05 Score=71.32 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=74.5
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc----CC---CcEEeccCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR----GL---VPLHVPLQQR 276 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R----g~---v~~~~g~ae~ 276 (365)
+|-..+.+.| |. |+ ||.|.|+|.++++|+.. | ..|++.+ ..+.+.+.|.+. |+ +.+..+|...
T Consensus 85 ~I~~~~gi~p---g~-rV-lEAGtGSG~lt~~La~~vg~~G~v~tyE--~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 85 YIVARLGISP---GS-RV-LEAGTGSGALTAYLARAVGPEGHVTTYE--IREDFAKTARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred HHHHHcCCCC---CC-EE-EEcccCchHHHHHHHHhhCCCceEEEEE--ecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence 3444444444 53 54 99999999999999952 3 3566544 445555554331 32 4556677666
Q ss_pred CCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 277 LPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 277 LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
--+.+ .||+|+.- ..+ +-.++..++.+||||| .-+|+.+++..+-+. ||..+
T Consensus 158 ~~~~~-~vDav~LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~-g~~~i 216 (256)
T COG2519 158 GIDEE-DVDAVFLD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER-GFVDI 216 (256)
T ss_pred ccccc-ccCEEEEc-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-Cccch
Confidence 65555 99999862 222 2258899999999999 567777755555444 88554
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00011 Score=69.27 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=58.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccC-CCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQ-QRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~a-e~LPF~D~SFDlV~s~~~L~~w 296 (365)
.||+||||+|..++.|++..-+|++++.+ ....+.|.+ .|. +.+..+|+ +.+| ...-||.|+..-+....
T Consensus 75 ~VLEIGtGsGY~aAvla~l~~~V~siEr~--~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~Vtaaa~~v 151 (209)
T COG2518 75 RVLEIGTGSGYQAAVLARLVGRVVSIERI--EELAEQARRNLETLGYENVTVRHGDGSKGWP-EEAPYDRIIVTAAAPEV 151 (209)
T ss_pred eEEEECCCchHHHHHHHHHhCeEEEEEEc--HHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCCCcCEEEEeeccCCC
Confidence 35999999999999999986688765443 444454433 244 66677774 4455 55789999998877543
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
+ . -+.+-|||||
T Consensus 152 P-~--------~Ll~QL~~gG 163 (209)
T COG2518 152 P-E--------ALLDQLKPGG 163 (209)
T ss_pred C-H--------HHHHhcccCC
Confidence 2 1 3567899999
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=70.43 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=63.5
Q ss_pred eEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHHHHc--------CCCc-------------------------
Q 017839 224 LGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAAALR--------GLVP------------------------- 268 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~~R--------g~v~------------------------- 268 (365)
-+|||||-.|.++..+++. | -.|+|+++| ....+.|.+. +.+.
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~~r~iLGvDID--~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFGPRRILGVDID--PVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred eeEeccCCcchhHHHHHHhhccceeeEeecc--HHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 4699999999999999986 4 456776665 3344444321 0000
Q ss_pred -------------EEeccCCCCCCCCCccceeEEcchh----hcccChhhHHHHHHHHHhhhCCCC---CcchhhhhH
Q 017839 269 -------------LHVPLQQRLPLFDGVLDVVRCGHAV----NRWIPVIMMEFLFYDVDRVLRGGG---KASDLENVY 326 (365)
Q Consensus 269 -------------~~~g~ae~LPF~D~SFDlV~s~~~L----~~w~d~~~le~aL~Ei~RVLRPGG---~~~~l~~~~ 326 (365)
++.-..+=|-+....||+|.|..+- -+|.|+ .+..++.-+.|.|.||| .+++-++-|
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~-GL~~ff~kis~ll~pgGiLvvEPQpWksY 215 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDD-GLRRFFRKISSLLHPGGILVVEPQPWKSY 215 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccH-HHHHHHHHHHHhhCcCcEEEEcCCchHHH
Confidence 0111111233567789999987642 256664 67889999999999999 444444433
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00031 Score=69.49 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=57.8
Q ss_pred ceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHc----------CCCcEEeccCCCC--CCCCCccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQRL--PLFDGVLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~L--PF~D~SFDlV~ 288 (365)
+.|||||||.|..+..++++ ++ .|+.+++| +.+.+.+.+. ..+.++.+|+... ..+++.||+|+
T Consensus 93 krVLiIGgG~G~~~rellk~~~v~~V~~VEiD--~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 93 KKVLVVGGGDGGVLREIARHSSVEQIDICEID--KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CeEEEEcCCccHHHHHHHhCCCCCeEEEEECC--HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 34599999999999999886 33 34444444 4455444321 1356777775321 12367899999
Q ss_pred EcchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
+-.. .++.+... -+.++..+.|+|+|||
T Consensus 171 ~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgG 200 (308)
T PLN02366 171 VDSS-DPVGPAQELFEKPFFESVARALRPGG 200 (308)
T ss_pred EcCC-CCCCchhhhhHHHHHHHHHHhcCCCc
Confidence 8432 23322111 1347899999999999
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.6e-05 Score=70.76 Aligned_cols=94 Identities=22% Similarity=0.275 Sum_probs=56.3
Q ss_pred CCCceEEEEcCccc----HHHHHHhhc-----C--CeEEEeccCCChhHHHHHHH-------------------------
Q 017839 220 SVIRLGIDVGGATG----SFAARMKLY-----N--ITILTTTMNLGAPYSEAAAL------------------------- 263 (365)
Q Consensus 220 g~iRi~LDIGCGtG----~faa~Lae~-----g--v~Vv~~~ldl~~~~~e~a~~------------------------- 263 (365)
+.+|| ..+||+|| ++|..|.+. + +.|+++++| ..+.+.|.+
T Consensus 31 ~~lrI-WSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~--~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~ 107 (196)
T PF01739_consen 31 RPLRI-WSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDIS--PSALEKARAGIYPERSLRGLPPAYLRRYFTERDG 107 (196)
T ss_dssp S-EEE-EETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES---HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-C
T ss_pred CCeEE-EECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECC--HHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCC
Confidence 56776 99999999 477777661 2 577777765 444443321
Q ss_pred ---------cCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 264 ---------RGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 264 ---------Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|..|.|...+.-..+...+.||+|+|..||..+.+ +..+.++.-+++.|+|||
T Consensus 108 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~~l~~~L~pgG 169 (196)
T PF01739_consen 108 GGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDP-ETQQRVLRRLHRSLKPGG 169 (196)
T ss_dssp CCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-H-HHHHHHHHHHGGGEEEEE
T ss_pred CceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCH-HHHHHHHHHHHHHcCCCC
Confidence 01234444444444456789999999999987654 456789999999999999
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.1e-05 Score=70.06 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCC---CCCccceeEEcchhhcc
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPL---FDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF---~D~SFDlV~s~~~L~~w 296 (365)
+.+|. |||||=...++..-.. -..|+..+++...+ .+.+.|-...|. +++.||+|.++.||...
T Consensus 51 ~~lrl-LEVGals~~N~~s~~~-~fdvt~IDLns~~~-----------~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV 117 (219)
T PF11968_consen 51 PKLRL-LEVGALSTDNACSTSG-WFDVTRIDLNSQHP-----------GILQQDFMERPLPKNESEKFDVISLSLVLNFV 117 (219)
T ss_pred ccceE-EeecccCCCCcccccC-ceeeEEeecCCCCC-----------CceeeccccCCCCCCcccceeEEEEEEEEeeC
Confidence 34665 9999875554433211 13344333432111 122233333343 47899999999999777
Q ss_pred cChhhHHHHHHHHHhhhCCCCC------------------cchhhhhHHHHHHhhCCceeeEEeecCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGGK------------------ASDLENVYGPLIGKLGYKKVKWATANKP 346 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG~------------------~~~l~~~~~~~l~~~gfk~i~w~v~~K~ 346 (365)
++.......++-+++.|||+|. ..-..+.+..+++.+||..++....+|+
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl 185 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKKL 185 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCeE
Confidence 7677778899999999999992 1111345788999999999988777776
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=97.73 E-value=8e-05 Score=71.62 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=56.2
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s~ 290 (365)
.|||||||+|.++..+.++. ..++.+++| +.+.+.+.+. ..+.++.+++.+ +.-.+++||+|++.
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~~~~v~~veid--~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKSVEKATLVDID--EKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCCcceEEEEeCC--HHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 45999999999998887764 345544444 4454444321 123455555422 23336799999986
Q ss_pred chhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
... .+.+... .+.++..+.|+|+|||
T Consensus 153 ~~~-~~~~~~~l~~~ef~~~~~~~L~pgG 180 (270)
T TIGR00417 153 STD-PVGPAETLFTKEFYELLKKALNEDG 180 (270)
T ss_pred CCC-CCCcccchhHHHHHHHHHHHhCCCc
Confidence 532 2222111 2457889999999999
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=72.06 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=48.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-------CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..+++++..++++++| ..+.+.+.++ +.+.++.+|+...+++ .||+|+++--.
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~~~~V~avEiD--~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlPY 111 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQLAKKVIAIEID--PRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVPY 111 (294)
T ss_pred EEEEecCchHHHHHHHHHhCCcEEEEECC--HHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCCc
Confidence 46999999999999999988777775554 5565544331 2366788888776654 68999986543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00023 Score=67.41 Aligned_cols=87 Identities=13% Similarity=0.055 Sum_probs=56.8
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHH----HcC---CCcEEeccCCC-CC-----CCCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQR-LP-----LFDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~-LP-----F~D~SFDl 286 (365)
+.+||||||+|.-+..|+.. +..+++.+.| +.+.+.+. +.| .+.++.+++.. |+ .++++||+
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d--~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDID--KEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 34699999999977777653 3467765544 44444432 234 36678887643 22 12578999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+.-.- .......+.++.|.|||||
T Consensus 148 VfiDa~------k~~y~~~~~~~~~ll~~GG 172 (234)
T PLN02781 148 AFVDAD------KPNYVHFHEQLLKLVKVGG 172 (234)
T ss_pred EEECCC------HHHHHHHHHHHHHhcCCCe
Confidence 987431 1233467889999999999
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.8e-05 Score=73.65 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=63.1
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc-------CC-----CcEEecc------CCCCCCCCCc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR-------GL-----VPLHVPL------QQRLPLFDGV 283 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R-------g~-----v~~~~g~------ae~LPF~D~S 283 (365)
+.+||+|||-|.-+...-..|+ ..+++++ ..-..+.+..| .. +.|+.++ ...++|.|-+
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~igiDI--AevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIGIDI--AEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEeeeh--hhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 4469999999987766655553 3444433 22222222221 11 3466665 3568888988
Q ss_pred cceeEEcchhh-cccChhhHHHHHHHHHhhhCCCC
Q 017839 284 LDVVRCGHAVN-RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 284 FDlV~s~~~L~-~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
||+|-|-+++| -|...+..+.+|..+.+.|||||
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG 231 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc
Confidence 99999999994 34566677889999999999999
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.6e-05 Score=75.43 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=56.7
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHcC-----------C-----CcEEeccC------CCCCC
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALRG-----------L-----VPLHVPLQ------QRLPL 279 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~Rg-----------~-----v~~~~g~a------e~LPF 279 (365)
..|||+|||-|.-..-+...++ .+++++++ ....+.+.+|= . ..++.++. +.++.
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis--~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVGIDIS--EESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEEEES---HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEEEeCC--HHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 3569999997765555555553 55665543 44444343321 0 12455543 23444
Q ss_pred CCCccceeEEcchhhccc-ChhhHHHHHHHHHhhhCCCC
Q 017839 280 FDGVLDVVRCGHAVNRWI-PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 280 ~D~SFDlV~s~~~L~~w~-d~~~le~aL~Ei~RVLRPGG 317 (365)
....||+|-|.+++|... ..+..+.+|..+.+.|||||
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Confidence 456999999999997544 45566789999999999999
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00029 Score=71.06 Aligned_cols=126 Identities=11% Similarity=0.013 Sum_probs=72.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCC-CCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRL-PLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~L-PF~D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++..++.++..|++++++ ..+.+.+.+ .+. +.++.++++++ +-..+.||+|+..=-....
T Consensus 236 ~vLDL~cG~G~~~l~la~~~~~v~~vE~~--~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGPDTQLTGIEIE--SEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred EEEEccCCccHHHHHHhhcCCeEEEEECC--HHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 56999999999999999888888876554 455544332 233 56788876553 2122469999875322111
Q ss_pred cChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeec
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQK 361 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~K 361 (365)
.+.++..+ .-++|++ ....+.++...+ .||+.. ....--+.+....+=.-++|+|
T Consensus 314 -----~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~-~~~~~DmFPqT~HvE~v~ll~r 374 (374)
T TIGR02085 314 -----GKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL---SGYQIE-RVQLFDMFPHTSHYEVLTLLVR 374 (374)
T ss_pred -----cHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh---cCceEE-EEEEeccCCCCCcEEEEEEEeC
Confidence 12333444 3479999 222333334444 588744 3333333344444444566654
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=77.16 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=62.2
Q ss_pred CceEEEEcCcccHHHHHHhhcC--CeEEEeccCCC--hhHHHHHHHcCC--CcEEeccCCCC--CCCCCccceeEEcchh
Q 017839 222 IRLGIDVGGATGSFAARMKLYN--ITILTTTMNLG--APYSEAAALRGL--VPLHVPLQQRL--PLFDGVLDVVRCGHAV 293 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~--~~~~e~a~~Rg~--v~~~~g~ae~L--PF~D~SFDlV~s~~~L 293 (365)
-.++||||||.|.|...+|+.+ ..++|+++... ......+..+|+ +.++.+++..+ =|+++++|.|+..+-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP- 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP- 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC-
Confidence 3678999999999999999874 56676554321 111122334454 23444454322 278999999999875
Q ss_pred hcccChh------hHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVI------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~------~le~aL~Ei~RVLRPGG 317 (365)
..|.... --...+.++.|+|||||
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG 456 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNG 456 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCC
Confidence 3564210 01258999999999999
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00021 Score=80.99 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=71.8
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH---c-------------------CCCcEEeccCCCCCC
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL---R-------------------GLVPLHVPLQQRLPL 279 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~---R-------------------g~v~~~~g~ae~LPF 279 (365)
.+||+|||+|..+..++++. ..|+++++ +..+.+.+.+ + ..+.++.+|.-.. +
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~~~v~avDi--s~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLPSKVYGLDI--NPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 35999999999999998763 56776554 4555544321 1 1256777775332 2
Q ss_pred CC--CccceeEEcchhh--------------c-----------ccC-------h---hhHHHHHHHHHhhhCCCC-----
Q 017839 280 FD--GVLDVVRCGHAVN--------------R-----------WIP-------V---IMMEFLFYDVDRVLRGGG----- 317 (365)
Q Consensus 280 ~D--~SFDlV~s~~~L~--------------~-----------w~d-------~---~~le~aL~Ei~RVLRPGG----- 317 (365)
.+ ..||+|+|+=-.. | ... . .-.+..+.+..++|||||
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 33 3699999874211 0 000 0 112567888999999999
Q ss_pred CcchhhhhHH-HHHHhhCCcee-eEE
Q 017839 318 KASDLENVYG-PLIGKLGYKKV-KWA 341 (365)
Q Consensus 318 ~~~~l~~~~~-~~l~~~gfk~i-~w~ 341 (365)
.+.+..+... +++++.||+.+ .|.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCeeEEee
Confidence 3443334455 68999999874 454
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00037 Score=71.13 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=65.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC----CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR----LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~----LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..|++.+..|+++++ ++.+.+.+.+ .|+ +.++.+++.+ +++.+++||+|+..---
T Consensus 295 ~vLDl~cG~G~~sl~la~~~~~V~~vE~--~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQAKSVVGIEV--VPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred EEEEcCCCcCHHHHHHHHhCCEEEEEEc--CHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 4699999999999999987777776544 4566555433 232 5678887653 44667789999864321
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceee
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~ 339 (365)
... ...++.++.+ |+|+| ....+.+. ...+.+.||+...
T Consensus 373 ~G~-----~~~~l~~l~~-l~~~~ivyvsc~p~tlard-~~~l~~~gy~~~~ 417 (431)
T TIGR00479 373 KGC-----AAEVLRTIIE-LKPERIVYVSCNPATLARD-LEFLCKEGYGITW 417 (431)
T ss_pred CCC-----CHHHHHHHHh-cCCCEEEEEcCCHHHHHHH-HHHHHHCCeeEEE
Confidence 111 1245555554 88988 11112121 2345667886443
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=70.37 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=71.4
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQR 276 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~ 276 (365)
+|-..+++.| |. | ||+.|.|+|.++..|++. | ..|.+. +....+.+.|.+ .|+ +.+...|..+
T Consensus 31 ~I~~~l~i~p---G~-~-VlEaGtGSG~lt~~l~r~v~p~G~v~t~--E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 31 YILMRLDIRP---GS-R-VLEAGTGSGSLTHALARAVGPTGHVYTY--EFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHTT--T---T--E-EEEE--TTSHHHHHHHHHHTTTSEEEEE--ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred HHHHHcCCCC---CC-E-EEEecCCcHHHHHHHHHHhCCCeEEEcc--ccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 4555566767 64 4 599999999999999864 2 466664 445666555443 233 5677777655
Q ss_pred CCCC---CCccceeEEcchhhcccChhhHHHHHHHHHhhh-CCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 277 LPLF---DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVL-RGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 277 LPF~---D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVL-RPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
--|. ++.||.|+--. -..| .++..+.++| |||| ..+|..+ ....+++.||..+
T Consensus 104 ~g~~~~~~~~~DavfLDl-p~Pw-------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~-~~~~L~~~gf~~i 167 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDL-PDPW-------EAIPHAKRALKKPGGRICCFSPCIEQVQK-TVEALREHGFTDI 167 (247)
T ss_dssp G--STT-TTSEEEEEEES-SSGG-------GGHHHHHHHE-EEEEEEEEEESSHHHHHH-HHHHHHHTTEEEE
T ss_pred ccccccccCcccEEEEeC-CCHH-------HHHHHHHHHHhcCCceEEEECCCHHHHHH-HHHHHHHCCCeee
Confidence 4443 46899988622 2233 3778899999 8999 5566665 4456677898654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.4e-05 Score=70.75 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=64.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH-HHcCC-----------------CcEEeccCCCCCCCC-Ccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA-ALRGL-----------------VPLHVPLQQRLPLFD-GVL 284 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a-~~Rg~-----------------v~~~~g~ae~LPF~D-~SF 284 (365)
.+|+.|||.|.-+..|+++|..|+|+++ +....+.+ .+++. +.++++|.-.++-.+ +.|
T Consensus 40 rvLvPgCG~g~D~~~La~~G~~VvGvDl--s~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 40 RVLVPGCGKGYDMLWLAEQGHDVVGVDL--SPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp EEEETTTTTSCHHHHHHHTTEEEEEEES---HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred eEEEeCCCChHHHHHHHHCCCeEEEEec--CHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 3599999999999999999999998655 44444433 33332 345667765665333 479
Q ss_pred ceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+|+=..+|.-+ +++..+...+-+.++|||||
T Consensus 118 D~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g 149 (218)
T PF05724_consen 118 DLIYDRTFLCAL-PPEMRERYAQQLASLLKPGG 149 (218)
T ss_dssp EEEEECSSTTTS--GGGHHHHHHHHHHCEEEEE
T ss_pred eEEEEecccccC-CHHHHHHHHHHHHHHhCCCC
Confidence 999976666444 44567789999999999999
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00015 Score=78.83 Aligned_cols=111 Identities=20% Similarity=0.136 Sum_probs=68.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC----CCcEEeccCCC-CCCCCCccceeEEcch-
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG----LVPLHVPLQQR-LPLFDGVLDVVRCGHA- 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg----~v~~~~g~ae~-LPF~D~SFDlV~s~~~- 292 (365)
.+||+|||||.|+..++..|. .|+++ |.++.+.+.+.+ .| .+.++.+|+.. +.-..++||+|++.=-
T Consensus 541 rVLDlf~gtG~~sl~aa~~Ga~~V~~v--D~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 541 DFLNLFAYTGTASVHAALGGAKSTTTV--DMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred eEEEcCCCCCHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 459999999999999998875 46654 555666554432 23 24577777533 2112578999998421
Q ss_pred h-------hcccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCce
Q 017839 293 V-------NRWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKK 337 (365)
Q Consensus 293 L-------~~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~ 337 (365)
+ ..|.........+..+.|+|+||| ....... -...+.+.||+.
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~-~~~~~~~~g~~~ 675 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM-DEEGLAKLGLKA 675 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh-hHHHHHhCCCeE
Confidence 0 011112234567888899999999 1111111 245677777654
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00079 Score=67.74 Aligned_cols=141 Identities=19% Similarity=0.258 Sum_probs=87.8
Q ss_pred ccccCceecccCCccchHHHHh-hhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C
Q 017839 191 SEKSSSFLAFKSELDLPVTQFL-DLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G 265 (365)
Q Consensus 191 ~~e~~~W~~~~g~~~f~I~~vL-~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g 265 (365)
..++.-|+.+.. .+-.+..++ ++.....|+ ++||==||||+++....-.|+.++|.++| ..|.+-+... +
T Consensus 169 ~~~kRPf~~p~s-~~P~lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~Did--~~mv~gak~Nl~~y~ 243 (347)
T COG1041 169 DPEKRPFFRPGS-MDPRLARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGSDID--ERMVRGAKINLEYYG 243 (347)
T ss_pred CcccCCccCcCC-cCHHHHHHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeecchH--HHHHhhhhhhhhhhC
Confidence 344545666632 332333333 232222253 46999999999999888789999987654 5555443321 2
Q ss_pred C--CcEEec-cCCCCCCCCCccceeEEcchh--h---cccC-hhhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHh
Q 017839 266 L--VPLHVP-LQQRLPLFDGVLDVVRCGHAV--N---RWIP-VIMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGK 332 (365)
Q Consensus 266 ~--v~~~~g-~ae~LPF~D~SFDlV~s~~~L--~---~w~d-~~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~ 332 (365)
+ ..++.. |+..+||++++||.|.|---. . .-.. ++..+.+|.++.+|||+|| ..+ ..-....+.
T Consensus 244 i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p---~~~~~~~~~ 320 (347)
T COG1041 244 IEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP---RDPRHELEE 320 (347)
T ss_pred cCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC---CcchhhHhh
Confidence 2 234555 999999999999999974311 0 0011 2346789999999999999 222 112335788
Q ss_pred hCCceee
Q 017839 333 LGYKKVK 339 (365)
Q Consensus 333 ~gfk~i~ 339 (365)
+||+.+.
T Consensus 321 ~~f~v~~ 327 (347)
T COG1041 321 LGFKVLG 327 (347)
T ss_pred cCceEEE
Confidence 8888753
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=4.3e-05 Score=69.28 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=39.0
Q ss_pred cCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 273 LQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 273 ~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.....+|.|+|.|+|.+.++++|+.-++. .++++|++|+|||||
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G 80 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGG 80 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCc
Confidence 34668999999999999999999986654 579999999999999
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00065 Score=67.05 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=64.9
Q ss_pred CCCceEEEEcCcccHHHHHHhhc-C---CeEEEeccCC-C-hhHHHHHHHcCC---CcEEeccCC---CCCCCCCcccee
Q 017839 220 SVIRLGIDVGGATGSFAARMKLY-N---ITILTTTMNL-G-APYSEAAALRGL---VPLHVPLQQ---RLPLFDGVLDVV 287 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~-g---v~Vv~~~ldl-~-~~~~e~a~~Rg~---v~~~~g~ae---~LPF~D~SFDlV 287 (365)
..+|| |||.||.|.......+. . ..|.-.+++. . +.-.+.++++|+ +.|..+++- .+.=-+-..|++
T Consensus 135 ~pvrI-lDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRI-LDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEE-EEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 56776 99999999865555443 2 2332222221 0 112356777875 478888652 232224457999
Q ss_pred EEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 288 RCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 288 ~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+..++.+.|.+.....|.-+.+.+.|||
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG 243 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGG 243 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCc
Confidence 999988888777767788999999999999
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=64.65 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=82.1
Q ss_pred hHHHHhhhccc---cCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHH---HHHHH-----------------
Q 017839 207 PVTQFLDLAKA---ANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYS---EAAAL----------------- 263 (365)
Q Consensus 207 ~I~~vL~~~p~---~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~---e~a~~----------------- 263 (365)
.++++-+..+. ..+.+|| |==|||.|.++-.++.+|..+-+.+++ .-|. .++..
T Consensus 40 I~~~L~~~~p~~~~~~~~~~V-LVPGsGLGRLa~Eia~~G~~~~gnE~S--~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRV-LVPGSGLGRLAWEIAKLGYAVQGNEFS--YFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHhhcccccCCCccEE-EEcCCCcchHHHHHhhccceEEEEEch--HHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 55555554441 1244665 999999999999999999887765444 2221 22211
Q ss_pred ----------cC----------------CCcEEeccCCCCCCCC---CccceeEEcchhhcccChhhHHHHHHHHHhhhC
Q 017839 264 ----------RG----------------LVPLHVPLQQRLPLFD---GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLR 314 (365)
Q Consensus 264 ----------Rg----------------~v~~~~g~ae~LPF~D---~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLR 314 (365)
|. .+.+..|+-..+.-.+ ++||+|++.+.++. ..++-..|..|+++||
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHLLK 193 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHHhc
Confidence 10 0122334433443334 79999998875543 2234568999999999
Q ss_pred CCC----------Ccch--------h---hhhHHHHHHhhCCceeeEEee
Q 017839 315 GGG----------KASD--------L---ENVYGPLIGKLGYKKVKWATA 343 (365)
Q Consensus 315 PGG----------~~~~--------l---~~~~~~~l~~~gfk~i~w~v~ 343 (365)
||| +.++ + .+....+++++||+.++....
T Consensus 194 pgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~ 243 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEESS 243 (270)
T ss_pred cCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 999 1111 1 234778999999999877663
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00091 Score=60.40 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=50.0
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc------CCCcEEec-cCCCC--C-CCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR------GLVPLHVP-LQQRL--P-LFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R------g~v~~~~g-~ae~L--P-F~D~SFDlV~s~~ 291 (365)
.||++|||+|-.+..++.. +..|+.++.+..-+..+.-.++ +.+.+..- ..+.+ . +..+.||+|+++.
T Consensus 48 ~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasD 127 (173)
T PF10294_consen 48 RVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASD 127 (173)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES
T ss_pred eEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEec
Confidence 4599999999998888887 4677766665311111111111 11222221 12211 1 2346899999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++++ .+..+.++.=+.+.|+|+|
T Consensus 128 v~Y~---~~~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 128 VLYD---EELFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp --S----GGGHHHHHHHHHHHBTT-T
T ss_pred ccch---HHHHHHHHHHHHHHhCCCC
Confidence 9964 2345678888999999999
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=58.47 Aligned_cols=66 Identities=14% Similarity=0.010 Sum_probs=49.1
Q ss_pred eEEEEcCcccH-HHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCC-CCccceeEEcch
Q 017839 224 LGIDVGGATGS-FAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLF-DGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~-faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~-D~SFDlV~s~~~ 292 (365)
.+||||||+|. ++..|++.|..|++++++ +...+.+.+++ +.++.+|.-+-.+. -..+|+|.+.+.
T Consensus 19 kileIG~GfG~~vA~~L~~~G~~ViaIDi~--~~aV~~a~~~~-~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 19 KIVELGIGFYFKVAKKLKESGFDVIVIDIN--EKAVEKAKKLG-LNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred EEEEEEecCCHHHHHHHHHCCCEEEEEECC--HHHHHHHHHhC-CeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 35999999995 999999999999876655 45566666665 47788876554443 567899998763
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0005 Score=71.35 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=57.5
Q ss_pred ceEEEEcCcccHHHHHHhhcC------CeEEEeccCCChhH-H-HHHHHc---CCCcEEeccCCCCCCCCCccceeEEcc
Q 017839 223 RLGIDVGGATGSFAARMKLYN------ITILTTTMNLGAPY-S-EAAALR---GLVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g------v~Vv~~~ldl~~~~-~-e~a~~R---g~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.+|||||||+|-+....++.+ +.|.++..+..+-. . +.+.+. +.|.++.++.+.+-.+. ..|+|+|-.
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSEl 266 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSEL 266 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE--
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEec
Confidence 578999999999876554432 56766555532211 1 122333 45888999998876544 999999865
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.- .+.+.+.....|.-.+|.|||||
T Consensus 267 LG-sfg~nEl~pE~Lda~~rfLkp~G 291 (448)
T PF05185_consen 267 LG-SFGDNELSPECLDAADRFLKPDG 291 (448)
T ss_dssp -B-TTBTTTSHHHHHHHGGGGEEEEE
T ss_pred cC-CccccccCHHHHHHHHhhcCCCC
Confidence 43 23344444457899999999999
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0013 Score=65.93 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHH-HHHH--cCCCcEEecc-CCCCCCCCCccceeEEcchhhcc
Q 017839 221 VIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSE-AAAL--RGLVPLHVPL-QQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 221 ~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e-~a~~--Rg~v~~~~g~-ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+...+|+|.|.|..+..+..+.-.|-++.+| .+... .+.. .| |..+.|+ -+..|=. |+|++-++|+||
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infd--lp~v~~~a~~~~~g-V~~v~gdmfq~~P~~----daI~mkWiLhdw 249 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFD--LPFVLAAAPYLAPG-VEHVAGDMFQDTPKG----DAIWMKWILHDW 249 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecC--HHHHHhhhhhhcCC-cceecccccccCCCc----CeEEEEeecccC
Confidence 36788999999999999998764334333444 33322 2111 23 4445554 3557744 499999999999
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.|. +....|+.++.-|+|||
T Consensus 250 tDe-dcvkiLknC~~sL~~~G 269 (342)
T KOG3178|consen 250 TDE-DCVKILKNCKKSLPPGG 269 (342)
T ss_pred ChH-HHHHHHHHHHHhCCCCC
Confidence 975 46789999999999999
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0014 Score=63.82 Aligned_cols=94 Identities=26% Similarity=0.289 Sum_probs=61.6
Q ss_pred CCCceEEEEcCccc----HHHHHHhhcC-------CeEEEeccCCChhHHHHHHH---------cCC-------------
Q 017839 220 SVIRLGIDVGGATG----SFAARMKLYN-------ITILTTTMNLGAPYSEAAAL---------RGL------------- 266 (365)
Q Consensus 220 g~iRi~LDIGCGtG----~faa~Lae~g-------v~Vv~~~ldl~~~~~e~a~~---------Rg~------------- 266 (365)
+.+|| .-+||+|| ++|..|.+.+ +.|+++++|. ...+.|.+ +++
T Consensus 96 ~~irI-WSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~--~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~ 172 (268)
T COG1352 96 RPIRI-WSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL--SVLEKARAGIYPSRELLRGLPPELLRRYFERGG 172 (268)
T ss_pred CceEE-EecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH--HHHHHHhcCCCChhHhhccCCHHHHhhhEeecC
Confidence 46877 99999999 4776666643 5677777663 33332211 111
Q ss_pred -------------CcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 267 -------------VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 267 -------------v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|.|...+.-.-++..+-||+|+|..|+.-+. .+..+.++..++..|+|||
T Consensus 173 ~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 173 DGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGG 235 (268)
T ss_pred CCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCC
Confidence 2222222222232667899999999997554 4556789999999999999
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00077 Score=68.86 Aligned_cols=91 Identities=13% Similarity=-0.013 Sum_probs=55.5
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC----CcEEeccCCCC----CCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQQRL----PLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~ae~L----PF~D~SFDlV~s~ 290 (365)
.+||+|||||.|+..++..|. .|++++ .+..+.+.+.+ .|+ +.++.+|+... .-..++||+|++.
T Consensus 223 rVLDlfsgtG~~~l~aa~~ga~~V~~VD--~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 223 RVLNCFSYTGGFAVSALMGGCSQVVSVD--TSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred eEEEeccCCCHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 459999999999887666664 666644 44556554432 232 45777776432 1135689999986
Q ss_pred chhhcccCh-------hhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPV-------IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~-------~~le~aL~Ei~RVLRPGG 317 (365)
=-. .-... ...+..+.-..++|+|||
T Consensus 301 PP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG 333 (396)
T PRK15128 301 PPK-FVENKSQLMGACRGYKDINMLAIQLLNPGG 333 (396)
T ss_pred CCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 311 00011 123334556789999999
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0018 Score=60.36 Aligned_cols=112 Identities=18% Similarity=0.141 Sum_probs=62.8
Q ss_pred ceEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHH---c--CCCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 223 RLGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAAL---R--GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~---R--g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
+.|+|+|||||.++.-.+-.| .+|+++++| ..+.+.+.+ + |.+.++.+++.++ +..||.|+.+=-+--|
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD--~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~~ 121 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDID--PEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecC--HHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCccc
Confidence 457999999999998888788 567766655 445544332 1 3477888776654 5567777776533222
Q ss_pred c---ChhhHHHHHHHHHhhhCCCCCcchhhhhHHHHHHhhCCce-eeEE
Q 017839 297 I---PVIMMEFLFYDVDRVLRGGGKASDLENVYGPLIGKLGYKK-VKWA 341 (365)
Q Consensus 297 ~---d~~~le~aL~Ei~RVLRPGG~~~~l~~~~~~~l~~~gfk~-i~w~ 341 (365)
. |..-++. ..|+-+|..-=+.-. ..+......+.+|+.. +.|+
T Consensus 122 ~rhaDr~Fl~~-Ale~s~vVYsiH~a~-~~~f~~~~~~~~G~~v~~~~~ 168 (198)
T COG2263 122 RRHADRPFLLK-ALEISDVVYSIHKAG-SRDFVEKFAADLGGTVTHIER 168 (198)
T ss_pred cccCCHHHHHH-HHHhhheEEEeeccc-cHHHHHHHHHhcCCeEEEEEE
Confidence 2 3222222 223333322222111 1233455778888654 3444
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0008 Score=61.22 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=68.3
Q ss_pred eEEEEcCcccHHHHHHhhc--CCe---------EEEeccCCChhHHHHHH----HcC---CCcEEeccCCCCCCCCCccc
Q 017839 224 LGIDVGGATGSFAARMKLY--NIT---------ILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQRLPLFDGVLD 285 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~---------Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~LPF~D~SFD 285 (365)
++||--||+|++....+.. ++. +++.++| ..+.+.+. ..| .+.+...++.+||+.+++||
T Consensus 31 ~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~--~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 31 VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDID--PKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp -EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESS--HHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCC--HHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 5699999999998665443 444 6676655 44444332 223 35677889999999999999
Q ss_pred eeEEcchhhcccC-----hhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCceeeEEe
Q 017839 286 VVRCGHAVNRWIP-----VIMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 286 lV~s~~~L~~w~d-----~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i~w~v 342 (365)
.|++.-=.-.-.. ......++.|+.|||+|.. ...+ +...++..++++.+-..
T Consensus 109 ~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~----~~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 109 AIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRE----LEKALGLKGWRKRKLYN 171 (179)
T ss_dssp EEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCC----HHHHHTSTTSEEEEEEE
T ss_pred EEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHHHhcchhhceEEEEE
Confidence 9999763211011 1223456899999999954 2222 34467776777665443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0022 Score=59.68 Aligned_cols=67 Identities=9% Similarity=-0.069 Sum_probs=42.2
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC-CCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR-LPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~-LPF~D~SFDlV~s~~~ 292 (365)
.+||+|||+|.++..++.++ ..|++++.+ ....+.+.+ .|. +.++.+++.+ ++-.++.||+|++.=-
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~--~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYAAGATLLEMD--RAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCCCEEEEEECC--HHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 45999999999998655554 567665544 444333322 232 5567776543 4334567999998654
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0033 Score=61.04 Aligned_cols=91 Identities=10% Similarity=0.081 Sum_probs=62.4
Q ss_pred cCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcE
Q 017839 194 SSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPL 269 (365)
Q Consensus 194 ~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~ 269 (365)
+|.|..... .++.+++.....++ ..+|+||+|.|.++..|++++..|++..+| ..+.+...++ +.+.+
T Consensus 9 GQnFL~d~~----v~~kIv~~a~~~~~--d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD--~~l~~~L~~~~~~~~n~~v 80 (259)
T COG0030 9 GQNFLIDKN----VIDKIVEAANISPG--DNVLEIGPGLGALTEPLLERAARVTAIEID--RRLAEVLKERFAPYDNLTV 80 (259)
T ss_pred ccccccCHH----HHHHHHHhcCCCCC--CeEEEECCCCCHHHHHHHhhcCeEEEEEeC--HHHHHHHHHhcccccceEE
Confidence 445544432 35566554332222 356999999999999999999888776666 4455444443 34678
Q ss_pred EeccCCCCCCCCC-ccceeEEcch
Q 017839 270 HVPLQQRLPLFDG-VLDVVRCGHA 292 (365)
Q Consensus 270 ~~g~ae~LPF~D~-SFDlV~s~~~ 292 (365)
+.+|+-..+|++. .++.|+++--
T Consensus 81 i~~DaLk~d~~~l~~~~~vVaNlP 104 (259)
T COG0030 81 INGDALKFDFPSLAQPYKVVANLP 104 (259)
T ss_pred EeCchhcCcchhhcCCCEEEEcCC
Confidence 8899999988876 6888888763
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0037 Score=61.25 Aligned_cols=87 Identities=22% Similarity=0.190 Sum_probs=57.1
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHH----HHcC---CCcEEeccCCC-CC-C----CCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQR-LP-L----FDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae~-LP-F----~D~SFDl 286 (365)
+.+||||+|+|..+..|++. +..+++.+.| +...+.+ .+.| .+.++.|++.. |+ + .+++||+
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d--~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERD--SNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 34599999999999999863 3456665544 4443333 2334 36777787532 33 1 2468999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+.-.- .......+..+.+.|||||
T Consensus 198 VFIDa~------K~~Y~~y~e~~l~lL~~GG 222 (278)
T PLN02476 198 AFVDAD------KRMYQDYFELLLQLVRVGG 222 (278)
T ss_pred EEECCC------HHHHHHHHHHHHHhcCCCc
Confidence 987432 2234467888899999999
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00081 Score=63.88 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=73.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
.+||+|.|.|..+.+|+...-.|.++.+ +..|.......+. .+ .+..+-+ --|-.||+|.|...|+.-.+ .-
T Consensus 115 ~lLDlGAGdGeit~~m~p~feevyATEl--S~tMr~rL~kk~y-nV-l~~~ew~-~t~~k~dli~clNlLDRc~~---p~ 186 (288)
T KOG3987|consen 115 TLLDLGAGDGEITLRMAPTFEEVYATEL--SWTMRDRLKKKNY-NV-LTEIEWL-QTDVKLDLILCLNLLDRCFD---PF 186 (288)
T ss_pred eEEeccCCCcchhhhhcchHHHHHHHHh--hHHHHHHHhhcCC-ce-eeehhhh-hcCceeehHHHHHHHHhhcC---hH
Confidence 4599999999999999875433333232 3345444444432 11 1211211 13557999999999854333 23
Q ss_pred HHHHHHHhhhCC-CC----------------------Ccc------------hhhhhHHHHHHhhCCceeeEEeecCCC
Q 017839 304 FLFYDVDRVLRG-GG----------------------KAS------------DLENVYGPLIGKLGYKKVKWATANKPN 347 (365)
Q Consensus 304 ~aL~Ei~RVLRP-GG----------------------~~~------------~l~~~~~~~l~~~gfk~i~w~v~~K~d 347 (365)
..|.+++-||+| .| ..+ +-...+.+++++.||..-.|.....+=
T Consensus 187 kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlPYLC 265 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLPYLC 265 (288)
T ss_pred HHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCCeec
Confidence 689999999999 67 001 111135678999999999998777653
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.014 Score=55.04 Aligned_cols=149 Identities=20% Similarity=0.185 Sum_probs=77.8
Q ss_pred ccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHcCCCcEEeccCCCC---
Q 017839 204 LDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL--- 277 (365)
Q Consensus 204 ~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L--- 277 (365)
..|-+.++.+--....+.. .|+|+|+-.|+++..++++ + ..|++++++...+. .| +.+++++...=
T Consensus 29 Aa~KL~el~~k~~i~~~~~-~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~------~~-V~~iq~d~~~~~~~ 100 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGM-VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI------PG-VIFLQGDITDEDTL 100 (205)
T ss_pred HHHHHHHHHHhcCeecCCC-EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC------CC-ceEEeeeccCccHH
Confidence 4555555554211111222 4699999999999998876 2 34776655421111 12 45555543221
Q ss_pred -----CCCCCccceeEEcchh---hcccChh----hHHHHHHH-HHhhhCCCC-------CcchhhhhHHHHHHhhCCce
Q 017839 278 -----PLFDGVLDVVRCGHAV---NRWIPVI----MMEFLFYD-VDRVLRGGG-------KASDLENVYGPLIGKLGYKK 337 (365)
Q Consensus 278 -----PF~D~SFDlV~s~~~L---~~w~d~~----~le~aL~E-i~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~ 337 (365)
-+....+|+|.|-.+= -+|.-+. .+.+...| ..+||+||| .+++.++ +..+++++ |++
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~-~l~~~~~~-F~~ 178 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFED-LLKALRRL-FRK 178 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHH-HHHHHHHh-hce
Confidence 1334447888854322 1222111 22233334 456999999 4555444 44455543 666
Q ss_pred eeEEeecCCCCCCCceEEEEeeecC
Q 017839 338 VKWATANKPNSKNGEVYLTALLQKP 362 (365)
Q Consensus 338 i~w~v~~K~d~~~~~~y~sall~KP 362 (365)
++...-+-.-+...|+|+-+.--|+
T Consensus 179 v~~~KP~aSR~~S~E~y~v~~~~~~ 203 (205)
T COG0293 179 VKIFKPKASRKRSREIYLVAKGFKG 203 (205)
T ss_pred eEEecCccccCCCceEEEEEecccc
Confidence 6543222221245699997765443
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0048 Score=60.60 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=52.9
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-------CCcEEeccCCCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-------LVPLHVPLQQRLPL 279 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-------~v~~~~g~ae~LPF 279 (365)
.++++..-++..++ .++|+||-|||.++..|.+.|.+|++..+| ..|.....+|+ ...+..||.-..++
T Consensus 46 v~~~I~~ka~~k~t--D~VLEvGPGTGnLT~~lLe~~kkVvA~E~D--prmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKADLKPT--DVVLEVGPGTGNLTVKLLEAGKKVVAVEID--PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccCCCCC--CEEEEeCCCCCHHHHHHHHhcCeEEEEecC--cHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 56666654333223 468999999999999999999999987776 45655555552 23466676544332
Q ss_pred CCCccceeEEc
Q 017839 280 FDGVLDVVRCG 290 (365)
Q Consensus 280 ~D~SFDlV~s~ 290 (365)
+ .||+++++
T Consensus 122 P--~fd~cVsN 130 (315)
T KOG0820|consen 122 P--RFDGCVSN 130 (315)
T ss_pred c--ccceeecc
Confidence 2 67888873
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.018 Score=60.24 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHH----HHHcCCC--cEEeccCCCCC-CCCCccceeE----E
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEA----AALRGLV--PLHVPLQQRLP-LFDGVLDVVR----C 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~----a~~Rg~v--~~~~g~ae~LP-F~D~SFDlV~----s 289 (365)
.|||+++|.|.=+..+++. ...+++.+++ ....+. +..-|+. .+...++..++ ...+.||.|. |
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~--~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQGAIVANEYS--ASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 3599999999988787764 1356654443 333322 2233543 33445666653 4456899999 7
Q ss_pred cch--h-------hcccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhhC
Q 017839 290 GHA--V-------NRWIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLG 334 (365)
Q Consensus 290 ~~~--L-------~~w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~g 334 (365)
+.. + ..|... ......|.+..+.||||| ..+|.+++...++++..
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 642 2 223221 011457888999999999 34555565666777653
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0087 Score=56.85 Aligned_cols=87 Identities=24% Similarity=0.219 Sum_probs=58.0
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC---CcEEe-ccC-CCCC-CCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL---VPLHV-PLQ-QRLP-LFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~-g~a-e~LP-F~D~SFDlV~s 289 (365)
+.+|+||.++|.-+.+|+.. +.++++++.| ..+.+.|++ -|. +.++. +++ +-|- +.+++||+|+.
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~--~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPDDGRLTTIERD--EERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCCCCeEEEEeCC--HHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 34599999999999999863 3467765544 555554432 233 44566 343 2222 67899999997
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
-. +. .....++.++.+.|||||
T Consensus 139 Da----dK--~~yp~~le~~~~lLr~GG 160 (219)
T COG4122 139 DA----DK--ADYPEYLERALPLLRPGG 160 (219)
T ss_pred eC----Ch--hhCHHHHHHHHHHhCCCc
Confidence 43 22 223468999999999999
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0072 Score=61.07 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=54.8
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
||+||||||+|.+....+..|+ .|.++ +. ..|.|.+.. .. .+.++-|-.|.+-.| +..|++++--.-.
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA~~vYAv--EA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGAKKVYAV--EA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCcceEEEE--eh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 7899999999998777776674 34332 21 234444332 11 244555667776654 4789999754322
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
-..+...+| ...-..|-|||.|
T Consensus 255 mL~NERMLE-sYl~Ark~l~P~G 276 (517)
T KOG1500|consen 255 MLVNERMLE-SYLHARKWLKPNG 276 (517)
T ss_pred hhhhHHHHH-HHHHHHhhcCCCC
Confidence 223334454 3445669999999
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0034 Score=63.38 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=49.8
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcch
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
..+|||||++|.|+..|.++|..|++++ . .++...+...+.|..+.+++-+..-..+.+|+|+|--+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD--~-g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMFVTAVD--N-GPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCEEEEEe--c-hhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 3579999999999999999999888754 2 34555555666777777766554223778999999654
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0051 Score=57.57 Aligned_cols=87 Identities=22% Similarity=0.159 Sum_probs=58.1
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHH----HHcC---CCcEEeccCCC-CC-----CCCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQR-LP-----LFDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae~-LP-----F~D~SFDl 286 (365)
+.+|+||||+|.-+.+|++. +..+++++.| ....+.+ ...| .+.++.|++.. |+ -..+.||+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~--~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEID--PERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESS--HHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCc--HHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 34699999999999999874 5678776655 4444333 2223 47788887532 22 12468999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+.-..= ......+..+.+.|||||
T Consensus 125 VFiDa~K------~~y~~y~~~~~~ll~~gg 149 (205)
T PF01596_consen 125 VFIDADK------RNYLEYFEKALPLLRPGG 149 (205)
T ss_dssp EEEESTG------GGHHHHHHHHHHHEEEEE
T ss_pred EEEcccc------cchhhHHHHHhhhccCCe
Confidence 9975421 223457788889999999
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0094 Score=56.65 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=54.9
Q ss_pred EEEEcCcccHHHHHHhhc----CCeEEEeccCCChhHHHH--------H--------HHcCCCcEEeccCCCCCCCCCcc
Q 017839 225 GIDVGGATGSFAARMKLY----NITILTTTMNLGAPYSEA--------A--------ALRGLVPLHVPLQQRLPLFDGVL 284 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~----gv~Vv~~~ldl~~~~~e~--------a--------~~Rg~v~~~~g~ae~LPF~D~SF 284 (365)
.||||.|||.+++.++.. |..++| ++......+. + .++|.+.+++|+....-=..+.|
T Consensus 86 ~LdvGsGSGYLt~~~~~mvg~~g~~~~G--IEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 86 FLDVGSGSGYLTACFARMVGATGGNVHG--IEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred eeecCCCccHHHHHHHHHhcCCCccccc--hhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 499999999988887743 333333 3322222221 1 23566778899887765578889
Q ss_pred ceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|.||+.-... ...+++-..|+|||
T Consensus 164 DaIhvGAaa~---------~~pq~l~dqL~~gG 187 (237)
T KOG1661|consen 164 DAIHVGAAAS---------ELPQELLDQLKPGG 187 (237)
T ss_pred ceEEEccCcc---------ccHHHHHHhhccCC
Confidence 9999985432 23467888899999
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.01 Score=62.12 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=66.2
Q ss_pred eEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHHHHHcC-----CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEAAALRG-----LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~a~~Rg-----~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
++|-+|||-=.+...+-+-|.. |.. .|.+....+.+..++ ...+...+...+.|+|++||+|.--..+++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~--iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITN--IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCcee--ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 3499999999999999887743 333 444444444444443 24567778999999999999999888776655
Q ss_pred Chhh-------HHHHHHHHHhhhCCCC
Q 017839 298 PVIM-------MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~-------le~aL~Ei~RVLRPGG 317 (365)
.++. ....+.|+.|||+|||
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~g 155 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGG 155 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCC
Confidence 3321 2245789999999999
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0089 Score=55.11 Aligned_cols=110 Identities=11% Similarity=0.056 Sum_probs=71.1
Q ss_pred cchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEE-eccCCChhHHHHHHHc-CCCcEEeccCCCCC----
Q 017839 205 DLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILT-TTMNLGAPYSEAAALR-GLVPLHVPLQQRLP---- 278 (365)
Q Consensus 205 ~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~-~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LP---- 278 (365)
+++...|.+.....+| + -||++|-|||-++..+.++|+.-.. ..++.+..+.....++ .-+.++.|++..|-
T Consensus 34 s~lA~~M~s~I~pesg-l-pVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 34 SILARKMASVIDPESG-L-PVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHHHHhccCcccC-C-eeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 3344455443322224 3 3599999999999999999853211 1233344454333322 22457778876664
Q ss_pred -CCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 279 -LFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 279 -F~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+..||.|+|.--+-++..... -..|.++.--|++||
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~-iaile~~~~rl~~gg 150 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRR-IAILESLLYRLPAGG 150 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHH-HHHHHHHHHhcCCCC
Confidence 78999999999987767664433 357888999999999
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0075 Score=60.25 Aligned_cols=68 Identities=12% Similarity=0.190 Sum_probs=41.9
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH----Hc-CC---CcEEe-ccCCCC----CCCCCccceeE
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA----LR-GL---VPLHV-PLQQRL----PLFDGVLDVVR 288 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~----~R-g~---v~~~~-g~ae~L----PF~D~SFDlV~ 288 (365)
.+||||||+|-.+..|+.+ +..++++++| ..+.+.++ .. ++ +.+.. .+...+ -..++.||+|+
T Consensus 117 ~vLDIGtGag~I~~lLa~~~~~~~~~atDId--~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 117 RVLDIGVGANCIYPLIGVHEYGWRFVGSDID--PQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred eEEEecCCccHHHHHHHhhCCCCEEEEEeCC--HHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 4599999999888887664 6778877665 33433332 22 22 33332 222222 23577999999
Q ss_pred Ecchh
Q 017839 289 CGHAV 293 (365)
Q Consensus 289 s~~~L 293 (365)
|+==+
T Consensus 195 cNPPf 199 (321)
T PRK11727 195 CNPPF 199 (321)
T ss_pred eCCCC
Confidence 98654
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.021 Score=57.54 Aligned_cols=123 Identities=13% Similarity=0.058 Sum_probs=66.6
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC-CC-CC--------------CC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR-LP-LF--------------DG 282 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~-LP-F~--------------D~ 282 (365)
+||++||+|.|+..+++....|++++. +..+.+.+.+ .|+ +.++.+++.+ ++ +. ..
T Consensus 210 vLDl~~G~G~~sl~la~~~~~v~~vE~--~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 210 LLELYCGNGNFTLALARNFRRVLATEI--SKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred EEEEeccccHHHHHHHhhCCEEEEEEC--CHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 699999999999999876667776554 4556554433 343 5677777654 22 10 22
Q ss_pred ccceeEEcchhhcccChhh-HHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEE
Q 017839 283 VLDVVRCGHAVNRWIPVIM-MEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYL 355 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~-le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~ 355 (365)
.||+|+.-=- ... .+.++ ..+.+|++ ....+.+.+..+. . ||+..+. ..--+.+....|=.
T Consensus 288 ~~D~v~lDPP------R~G~~~~~l---~~l~~~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v-~~~DmFPqT~HvE~ 355 (362)
T PRK05031 288 NFSTIFVDPP------RAGLDDETL---KLVQAYERILYISCNPETLCENLETLS-Q-THKVERF-ALFDQFPYTHHMEC 355 (362)
T ss_pred CCCEEEECCC------CCCCcHHHH---HHHHccCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEE-EEcccCCCCCcEEE
Confidence 5899876321 111 11233 33344777 2333334344444 3 8874433 23223344444444
Q ss_pred EEeeec
Q 017839 356 TALLQK 361 (365)
Q Consensus 356 sall~K 361 (365)
-++|+|
T Consensus 356 v~lL~r 361 (362)
T PRK05031 356 GVLLEK 361 (362)
T ss_pred EEEEEe
Confidence 566654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.018 Score=57.86 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=57.1
Q ss_pred ceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s 289 (365)
+.+|-||+|.|..+..+.+. ++ .++.+++| +...+.+.+. ..+.++.+|+.+ |.-.++.||+|++
T Consensus 105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD--~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDID--QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CEEEEECCCchHHHHHHHhCCCCCeEEEEECC--HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 44699999999999988875 33 44444444 5566655431 134567776543 3445789999997
Q ss_pred cchhhcccC--hh--hHHHHHH-HHHhhhCCCC
Q 017839 290 GHAVNRWIP--VI--MMEFLFY-DVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d--~~--~le~aL~-Ei~RVLRPGG 317 (365)
-. ...+.. .. --..++. .+.|.|+|||
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~G 214 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGG 214 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCc
Confidence 52 222210 00 0123566 7899999999
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.03 Score=51.47 Aligned_cols=88 Identities=10% Similarity=-0.035 Sum_probs=48.9
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC---CCcEEeccCCC-CC-C-CCC-ccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQR-LP-L-FDG-VLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~-LP-F-~D~-SFDlV~s~~ 291 (365)
.+||++||+|.++..++.+|. .|+.++.| ....+.+.+ .+ .+.++.+++.+ +. + ..+ .||+|+.-=
T Consensus 52 ~vLDLfaGsG~lglea~srga~~v~~vE~~--~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSRGAKVAFLEEDD--RKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred EEEEecCCCcHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 469999999999999999986 56654444 444433321 22 24567777633 32 2 223 367776532
Q ss_pred hhhcccChhhHHHHHHHH--HhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDV--DRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei--~RVLRPGG 317 (365)
-+.. . ..+..+.-+ ..+|++||
T Consensus 130 Py~~-~---~~~~~l~~l~~~~~l~~~~ 153 (189)
T TIGR00095 130 PFFN-G---ALQALLELCENNWILEDTV 153 (189)
T ss_pred CCCC-C---cHHHHHHHHHHCCCCCCCe
Confidence 2211 1 111222222 45788888
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.012 Score=54.20 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=51.6
Q ss_pred EEEEcCcccHHHHHHhh--cCCeEEEeccCCChh---HHHH-HHHcCC--CcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 225 GIDVGGATGSFAARMKL--YNITILTTTMNLGAP---YSEA-AALRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae--~gv~Vv~~~ldl~~~---~~e~-a~~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
++|||+|.|.-+.-|+= -...++- +|.... +.+. +.+-|+ +.++.+.++. +-..+.||+|++.-+- .
T Consensus 52 ~lDiGSGaGfPGipLaI~~p~~~~~L--vEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~-~- 126 (184)
T PF02527_consen 52 VLDIGSGAGFPGIPLAIARPDLQVTL--VESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA-P- 126 (184)
T ss_dssp EEEETSTTTTTHHHHHHH-TTSEEEE--EESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS-S-
T ss_pred EEecCCCCCChhHHHHHhCCCCcEEE--EeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc-C-
Confidence 69999999986666542 2344432 232222 2222 333354 4566677777 6788999999997753 2
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
+...+.-+.+.|++||
T Consensus 127 -----l~~l~~~~~~~l~~~G 142 (184)
T PF02527_consen 127 -----LDKLLELARPLLKPGG 142 (184)
T ss_dssp -----HHHHHHHHGGGEEEEE
T ss_pred -----HHHHHHHHHHhcCCCC
Confidence 3357778889999999
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.05 Score=55.88 Aligned_cols=92 Identities=20% Similarity=0.086 Sum_probs=60.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC----CcEEeccC-CCCCC---CCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQ-QRLPL---FDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~a-e~LPF---~D~SFDlV~s~ 290 (365)
.+||+=|=||.|+...+..|+ .|++++ ++....+.+.+ .|+ +.++++|+ +-|.. ....||+|+.-
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA~~vt~VD--~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGASEVTSVD--LSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred eEEEecccCcHHHHHHHhcCCCceEEEe--ccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 469999999999999998887 777644 44555554433 243 45777774 22332 23499999852
Q ss_pred c---hh---hcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 H---AV---NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~---~L---~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
= +- ..|.-..+....+....++|+|||
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG 330 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGG 330 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCC
Confidence 1 10 112222334567889999999999
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.15 Score=49.27 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=52.7
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHH-HHHHcCCCcEEec-cCCCCC--CCCCccceeEEcchhhccc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSE-AAALRGLVPLHVP-LQQRLP--LFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e-~a~~Rg~v~~~~g-~ae~LP--F~D~SFDlV~s~~~L~~w~ 297 (365)
+++||||.-||.|+..+.++|+ .|.++ |.+-.+.. ..+..-.+-.+.. ++..+- -..+..|+++|--++.-
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk~Vyav--DVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFIS-- 156 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAKHVYAV--DVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFIS-- 156 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCcEEEEE--EccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhh--
Confidence 6789999999999999999984 44443 32211111 1111112222222 333331 11226789998776642
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
+..+|-.+..+|+|||
T Consensus 157 ----L~~iLp~l~~l~~~~~ 172 (245)
T COG1189 157 ----LKLILPALLLLLKDGG 172 (245)
T ss_pred ----HHHHHHHHHHhcCCCc
Confidence 3468899999999998
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.029 Score=57.19 Aligned_cols=85 Identities=19% Similarity=0.127 Sum_probs=54.3
Q ss_pred eEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||++||+|.++.+++.. ++ .|++.++| ....+.+.+ .++ +.++.+++..+....+.||+|...= .
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din--~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTLNDIN--PDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 4599999999999999764 43 56665544 445444432 233 3367777765432256799998742 1
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
. ....++....+.++|||
T Consensus 135 -G---s~~~~l~~al~~~~~~g 152 (382)
T PRK04338 135 -G---SPAPFLDSAIRSVKRGG 152 (382)
T ss_pred -C---CcHHHHHHHHHHhcCCC
Confidence 1 11246667678899999
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.02 Score=53.61 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=51.5
Q ss_pred ceEEEEcCcccHHHHHHhh--cCCeEEEeccCCChhHHHH----HHHc---CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKL--YNITILTTTMNLGAPYSEA----AALR---GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae--~gv~Vv~~~ldl~~~~~e~----a~~R---g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+|||+-||.|.|+..+++ ++..|++.++|. ...+. +... +.+..+.+|+..++- .+.||-|++..-
T Consensus 103 e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np--~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp- 178 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNP--DAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP- 178 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT-SSEEEEEES-H--HHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-
T ss_pred eEEEEccCCccHHHHHHhhhcCccEEEEecCCH--HHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-
Confidence 3579999999999999998 567788777663 22222 2222 235567788877765 899998888652
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.. .. .+|.+..+.+|+||
T Consensus 179 ----~~-~~-~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 179 ----ES-SL-EFLDAALSLLKEGG 196 (200)
T ss_dssp ----SS-GG-GGHHHHHHHEEEEE
T ss_pred ----HH-HH-HHHHHHHHHhcCCc
Confidence 11 11 36777888888887
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.054 Score=52.19 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=56.1
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHH----HHcC---CCcEEeccCC-CCCC------CCCccc
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQ-RLPL------FDGVLD 285 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae-~LPF------~D~SFD 285 (365)
+.+|+||+++|.-+.+|++. +..+++.+.| ....+.+ ...| .+.++.|++. -||- .+++||
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 34699999999988888763 4567765554 3333333 2334 3677888653 2332 146999
Q ss_pred eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+|+.-.- . ......+..+.+.|||||
T Consensus 159 ~iFiDad----K--~~Y~~y~~~~l~ll~~GG 184 (247)
T PLN02589 159 FIFVDAD----K--DNYINYHKRLIDLVKVGG 184 (247)
T ss_pred EEEecCC----H--HHhHHHHHHHHHhcCCCe
Confidence 9997542 1 122346667789999999
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.035 Score=54.90 Aligned_cols=83 Identities=14% Similarity=0.046 Sum_probs=53.0
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCC-
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLP- 278 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LP- 278 (365)
+++++++.....+|. ++||.+||.|..+..+++.. ..|++. |.+..+.+.+.++ +.+.++.++...+.
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~Vigi--D~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAI--DRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE 82 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEE--cCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH
Confidence 456666643222243 57999999999999999873 678875 4456676666543 23566776644432
Q ss_pred C-CCC--ccceeEEcchh
Q 017839 279 L-FDG--VLDVVRCGHAV 293 (365)
Q Consensus 279 F-~D~--SFDlV~s~~~L 293 (365)
. .++ +||.|+.-..+
T Consensus 83 ~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 83 VLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHcCCCccCEEEECCCc
Confidence 1 122 79999976654
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.056 Score=51.82 Aligned_cols=92 Identities=11% Similarity=0.120 Sum_probs=58.5
Q ss_pred ccCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCc
Q 017839 193 KSSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVP 268 (365)
Q Consensus 193 e~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~ 268 (365)
-+|+|..... .++.+++......+ ..|||||.|+|.++..|.+++..++..+.| ..+.+...++ +.+.
T Consensus 8 ~gQnFL~~~~----~~~~Iv~~~~~~~~--~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d--~~~~~~L~~~~~~~~~~~ 79 (262)
T PF00398_consen 8 LGQNFLVDPN----IADKIVDALDLSEG--DTVLEIGPGPGALTRELLKRGKRVIAVEID--PDLAKHLKERFASNPNVE 79 (262)
T ss_dssp CTSSEEEHHH----HHHHHHHHHTCGTT--SEEEEESSTTSCCHHHHHHHSSEEEEEESS--HHHHHHHHHHCTTCSSEE
T ss_pred CCcCeeCCHH----HHHHHHHhcCCCCC--CEEEEeCCCCccchhhHhcccCcceeecCc--HhHHHHHHHHhhhcccce
Confidence 4555655432 34444443221113 456999999999999999998777765554 5566655552 3467
Q ss_pred EEeccCCCCCCCC---CccceeEEcch
Q 017839 269 LHVPLQQRLPLFD---GVLDVVRCGHA 292 (365)
Q Consensus 269 ~~~g~ae~LPF~D---~SFDlV~s~~~ 292 (365)
++.+|+..+.+++ +.-..|+++--
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred eeecchhccccHHhhcCCceEEEEEec
Confidence 8888988887666 55666776543
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.054 Score=49.30 Aligned_cols=65 Identities=15% Similarity=0.015 Sum_probs=38.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCC----CCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQ----RLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae----~LPF~D~SFDlV~s~~ 291 (365)
+++|+.||.|..+..+++.+-.|+++++| ....+.++. -| .+.++.+|.. ++..... ||+|+++=
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid--~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~-~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDID--PERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKI-FDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES---HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccccc-ccEEEECC
Confidence 57999999999999999998888876665 444444322 24 3678888743 3332222 89999765
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.73 Score=43.27 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=70.5
Q ss_pred cCceecccCCccchHHHHhhhcc-ccCCCCceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhH--HHHHHHcC-C
Q 017839 194 SSSFLAFKSELDLPVTQFLDLAK-AANSVIRLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPY--SEAAALRG-L 266 (365)
Q Consensus 194 ~~~W~~~~g~~~f~I~~vL~~~p-~~~g~iRi~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~--~e~a~~Rg-~ 266 (365)
.+.|+.|..++=.++|.+..-.. ..+....|+|+||||+|-....|++. ++..+.+++|..+-. .+.+...+ .
T Consensus 15 f~dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 15 FSDVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH 94 (209)
T ss_pred hhhccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc
Confidence 33566665543223443332111 11122467899999999988888875 355555566632211 12233222 2
Q ss_pred CcEEecc-CCCCCCCCCccceeEEcchhh--------------ccc----ChhhHHHHHHHHHhhhCCCC-------Ccc
Q 017839 267 VPLHVPL-QQRLPLFDGVLDVVRCGHAVN--------------RWI----PVIMMEFLFYDVDRVLRGGG-------KAS 320 (365)
Q Consensus 267 v~~~~g~-ae~LPF~D~SFDlV~s~~~L~--------------~w~----d~~~le~aL~Ei~RVLRPGG-------~~~ 320 (365)
+..++.+ ...|- .++.|+++-+--.. -|. ..+-.+..+..+..+|.|.| ..+
T Consensus 95 ~~~V~tdl~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 95 IDVVRTDLLSGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred cceeehhHHhhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 3444443 12221 26666665443211 122 11124566777888889999 222
Q ss_pred hhhhhHHHHHHhhCCc
Q 017839 321 DLENVYGPLIGKLGYK 336 (365)
Q Consensus 321 ~l~~~~~~~l~~~gfk 336 (365)
...+ ...+++.-||.
T Consensus 173 ~p~e-i~k~l~~~g~~ 187 (209)
T KOG3191|consen 173 KPKE-ILKILEKKGYG 187 (209)
T ss_pred CHHH-HHHHHhhcccc
Confidence 2233 33477777775
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.84 Score=46.09 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=67.9
Q ss_pred HHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc----CCeEEEeccCCChhHHHH----HHHcCCC--cEEeccCCCC
Q 017839 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY----NITILTTTMNLGAPYSEA----AALRGLV--PLHVPLQQRL 277 (365)
Q Consensus 208 I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~----gv~Vv~~~ldl~~~~~e~----a~~Rg~v--~~~~g~ae~L 277 (365)
...+|+..+ |. .|||++.+.|.=+.+|++. |..|+..++ ++...+. +..-|.. .....++.++
T Consensus 148 ~a~~L~p~p---ge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~--~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~ 220 (355)
T COG0144 148 PALVLDPKP---GE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDV--SPKRLKRLRENLKRLGVRNVIVVNKDARRL 220 (355)
T ss_pred HHHHcCCCC---cC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcC--CHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence 445555555 53 4599999999866666664 345565444 4433332 3333543 3555666655
Q ss_pred C---CCCCccceeE----Ecc--hhh-------cccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhH
Q 017839 278 P---LFDGVLDVVR----CGH--AVN-------RWIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVY 326 (365)
Q Consensus 278 P---F~D~SFDlV~----s~~--~L~-------~w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~ 326 (365)
+ +..+.||.|. |+. +++ .|... ......|....++||||| ..++.+++.
T Consensus 221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV 300 (355)
T COG0144 221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVV 300 (355)
T ss_pred cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHH
Confidence 4 2233599997 333 331 12211 112357889999999999 345555556
Q ss_pred HHHHHhh
Q 017839 327 GPLIGKL 333 (365)
Q Consensus 327 ~~~l~~~ 333 (365)
..++++.
T Consensus 301 ~~~L~~~ 307 (355)
T COG0144 301 ERFLERH 307 (355)
T ss_pred HHHHHhC
Confidence 6666664
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.15 Score=49.43 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=46.4
Q ss_pred ceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHH--cCCCc-----EEec-cCCCCCCCCCccceeEEcc
Q 017839 223 RLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAAL--RGLVP-----LHVP-LQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~--Rg~v~-----~~~g-~ae~LPF~D~SFDlV~s~~ 291 (365)
+.+||+|||+|+-.-...+. + .+++ .+|.+..|.+.+.. ++... .... ..+.+++... |+|++++
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~--~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--DLvi~s~ 110 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYT--CVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPD--DLVIASY 110 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeee--eecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCC--cEEEEeh
Confidence 34699999999855444432 2 2233 35555666554321 11111 1111 1233454433 9999999
Q ss_pred hhhcccChhhHHHHHHHHHhhh
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVL 313 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVL 313 (365)
+|....+ .....++..+.+.+
T Consensus 111 ~L~EL~~-~~r~~lv~~LW~~~ 131 (274)
T PF09243_consen 111 VLNELPS-AARAELVRSLWNKT 131 (274)
T ss_pred hhhcCCc-hHHHHHHHHHHHhc
Confidence 9987766 44455555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.18 Score=55.31 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=39.8
Q ss_pred eEEEeccCCChhHHHHHH----HcCC---CcEEeccCCCCCCC--CCccceeEEcchh-hcccChhhHHHHHHHH---Hh
Q 017839 245 TILTTTMNLGAPYSEAAA----LRGL---VPLHVPLQQRLPLF--DGVLDVVRCGHAV-NRWIPVIMMEFLFYDV---DR 311 (365)
Q Consensus 245 ~Vv~~~ldl~~~~~e~a~----~Rg~---v~~~~g~ae~LPF~--D~SFDlV~s~~~L-~~w~d~~~le~aL~Ei---~R 311 (365)
.++++++| ..+.+.+. ..|+ +.+..+++.+++.+ +++||+|+++==. ..+.+...++....++ .|
T Consensus 258 ~i~G~Did--~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 258 KFYGSDID--PRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred eEEEEECC--HHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 45665554 45544433 3344 66888888888655 3689999998422 1222223333444444 44
Q ss_pred hhCCCC
Q 017839 312 VLRGGG 317 (365)
Q Consensus 312 VLRPGG 317 (365)
...||+
T Consensus 336 ~~~~g~ 341 (702)
T PRK11783 336 QQFGGW 341 (702)
T ss_pred HhCCCC
Confidence 444887
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.09 Score=49.79 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=43.6
Q ss_pred EEeccCCCC--CCCCCccceeEEcc--h--hhcccC--------hhhHHHHHHHHHhhhCCCC------CcchhhhhHHH
Q 017839 269 LHVPLQQRL--PLFDGVLDVVRCGH--A--VNRWIP--------VIMMEFLFYDVDRVLRGGG------KASDLENVYGP 328 (365)
Q Consensus 269 ~~~g~ae~L--PF~D~SFDlV~s~~--~--L~~w~d--------~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~ 328 (365)
++.+|+-++ .++|+++|+|++.= . ..+... .+-.+..+.|++||||||| ...... .+..
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~-~~~~ 82 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVD-RFMA 82 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHH-HHHH
Confidence 344544322 35677888877761 0 000000 0123468999999999999 123233 3566
Q ss_pred HHHhhCCceeeEEeecCC
Q 017839 329 LIGKLGYKKVKWATANKP 346 (365)
Q Consensus 329 ~l~~~gfk~i~w~v~~K~ 346 (365)
+++..||+...+.+=.|.
T Consensus 83 al~~~GF~l~~~IiW~K~ 100 (227)
T PRK13699 83 AWKNAGFSVVGHLVFTKN 100 (227)
T ss_pred HHHHCCCEEeeEEEEECC
Confidence 788999976544443443
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.078 Score=51.53 Aligned_cols=76 Identities=12% Similarity=0.197 Sum_probs=51.3
Q ss_pred ccceeEEcchhhccc-ChhhHHHHHHHHHhhhCCCC--------------Ccch-------hhhhHHHHHHhhCCceeeE
Q 017839 283 VLDVVRCGHAVNRWI-PVIMMEFLFYDVDRVLRGGG--------------KASD-------LENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 283 SFDlV~s~~~L~~w~-d~~~le~aL~Ei~RVLRPGG--------------~~~~-------l~~~~~~~l~~~gfk~i~w 340 (365)
.||+|++.+|++-.. +.+....+++.+-+.||||| .++. .++.....+++.||....+
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 599999999997655 44566789999999999999 1111 1345667999999988888
Q ss_pred EeecCCC-CCCCceEEEEeeec
Q 017839 341 ATANKPN-SKNGEVYLTALLQK 361 (365)
Q Consensus 341 ~v~~K~d-~~~~~~y~sall~K 361 (365)
.. ... .+.+.+++ ++-+|
T Consensus 238 ~~--~~~~~d~~~~~f-~~a~K 256 (256)
T PF01234_consen 238 EK--QSKVSDYEGMFF-LVARK 256 (256)
T ss_dssp EG---TTTB---EEEE-EEEEE
T ss_pred cc--ccCcCCCCcEEE-EEEeC
Confidence 72 122 25556665 55555
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.25 Score=48.64 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=57.4
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s 289 (365)
|.||=||.|.|..++.+.++. ..++-+++| +...+.+++. -++.++.+|+-+ +.=..++||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID--~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEID--PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcC--HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 567999999999999999885 344444454 5555555432 123556666533 3322338999997
Q ss_pred cchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
-.. ..-.+.+. -+.+++.++|.|+|+|
T Consensus 156 D~t-dp~gp~~~Lft~eFy~~~~~~L~~~G 184 (282)
T COG0421 156 DST-DPVGPAEALFTEEFYEGCRRALKEDG 184 (282)
T ss_pred cCC-CCCCcccccCCHHHHHHHHHhcCCCc
Confidence 442 11011000 1358999999999999
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.16 Score=50.32 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=41.4
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH-------cCCCcEE----ecc-CCCCCCCCCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL-------RGLVPLH----VPL-QQRLPLFDGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~-------Rg~v~~~----~g~-ae~LPF~D~SFDlV~s 289 (365)
++||+|||+|-.+..|+.. ..+|++ +|.+......+.+ .|.+..+ .++ ....|..++..|+++|
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~A--iD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTA--IDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEE--EeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 4599999999999888764 355554 4544444333322 2433333 232 3345667899999999
Q ss_pred cc
Q 017839 290 GH 291 (365)
Q Consensus 290 ~~ 291 (365)
+=
T Consensus 229 NP 230 (328)
T KOG2904|consen 229 NP 230 (328)
T ss_pred CC
Confidence 75
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.93 Score=43.92 Aligned_cols=132 Identities=16% Similarity=0.218 Sum_probs=75.2
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCC--CCccceeEEcchhhcc------
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLF--DGVLDVVRCGHAVNRW------ 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~--D~SFDlV~s~~~L~~w------ 296 (365)
++|+-||.|.+..-+.+.|..++. ..|.+....+.....-.-..+.+|.+.+.-. ...+|+++.+.-=..+
T Consensus 3 v~dLFsG~Gg~~~gl~~~G~~~v~-a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~ 81 (275)
T cd00315 3 VIDLFAGIGGFRLGLEKAGFEIVA-ANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKR 81 (275)
T ss_pred EEEEccCcchHHHHHHHcCCEEEE-EEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhc
Confidence 499999999998888888877643 3444444444333321112455666665432 3569999976621111
Q ss_pred --cChhhHHHHHHHHHhhhCCCC-------------C--cchhhhhHHHHHHhhCCceeeEEeecCCC---C-CCCceEE
Q 017839 297 --IPVIMMEFLFYDVDRVLRGGG-------------K--ASDLENVYGPLIGKLGYKKVKWATANKPN---S-KNGEVYL 355 (365)
Q Consensus 297 --~d~~~le~aL~Ei~RVLRPGG-------------~--~~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~~~~y~ 355 (365)
.++ ....++.++.|+++--- . ..+.-+.+...++++||. +.|.+-.-.| + .+..+|+
T Consensus 82 ~~~~d-~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~-~~~~~l~a~~~GvPQ~R~R~~~ 159 (275)
T cd00315 82 KGFED-TRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYN-VYWKLLNASDYGVPQNRERVFI 159 (275)
T ss_pred CCCCC-chHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcE-EEEEEEEHHHcCCCCCCcEEEE
Confidence 111 12235556666655433 1 011123366778999997 5666555433 2 4777888
Q ss_pred EEee
Q 017839 356 TALL 359 (365)
Q Consensus 356 sall 359 (365)
-|..
T Consensus 160 ia~~ 163 (275)
T cd00315 160 IGIR 163 (275)
T ss_pred EEEe
Confidence 7775
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.42 Score=46.58 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=59.7
Q ss_pred cchHHHHhhhcccc-CCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----------cCCCcEEecc
Q 017839 205 DLPVTQFLDLAKAA-NSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----------RGLVPLHVPL 273 (365)
Q Consensus 205 ~f~I~~vL~~~p~~-~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----------Rg~v~~~~g~ 273 (365)
+|.-.++|...+.. -+.-+.||=||.|-|..++.+.++.-.|+-+++| +...+.+.+ ..++.++...
T Consensus 55 EfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID--~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~ 132 (262)
T PRK00536 55 LHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD--EKILDSFISFFPHFHEVKNNKNFTHAKQL 132 (262)
T ss_pred hhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECC--HHHHHHHHHHCHHHHHhhcCCCEEEeehh
Confidence 45456666543321 1233567999999999999999875455444454 555554433 1122333210
Q ss_pred CCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 274 QQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 274 ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+ -..++||+|++-.. .+ +.....++|.|+|||
T Consensus 133 -~~--~~~~~fDVIIvDs~----~~----~~fy~~~~~~L~~~G 165 (262)
T PRK00536 133 -LD--LDIKKYDLIICLQE----PD----IHKIDGLKRMLKEDG 165 (262)
T ss_pred -hh--ccCCcCCEEEEcCC----CC----hHHHHHHHHhcCCCc
Confidence 00 02478999997542 11 146789999999999
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.33 Score=48.60 Aligned_cols=91 Identities=4% Similarity=0.000 Sum_probs=54.8
Q ss_pred eEEEEcCcccHHHHHHhh----cC--CeEEEeccCCChhHHHHHHHc----CCCcE----EeccC----CCCC--CCCCc
Q 017839 224 LGIDVGGATGSFAARMKL----YN--ITILTTTMNLGAPYSEAAALR----GLVPL----HVPLQ----QRLP--LFDGV 283 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae----~g--v~Vv~~~ldl~~~~~e~a~~R----g~v~~----~~g~a----e~LP--F~D~S 283 (365)
.++|+|||.|.=+..|.+ .+ ++.+ .+|++..+.+.+.++ ....+ +.|+- +.|| -..+.
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~--plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSVDYY--ALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCceEE--EEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 359999999986554433 22 4444 466667776655432 21112 33321 2232 12234
Q ss_pred cceeE-EcchhhcccChhhHHHHHHHHHh-hhCCCC
Q 017839 284 LDVVR-CGHAVNRWIPVIMMEFLFYDVDR-VLRGGG 317 (365)
Q Consensus 284 FDlV~-s~~~L~~w~d~~~le~aL~Ei~R-VLRPGG 317 (365)
..+|. -+.++-|+.+.+. ..+|+++.+ +|+|||
T Consensus 157 ~r~~~flGSsiGNf~~~ea-~~fL~~~~~~~l~~~d 191 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEA-AAFLAGFLATALSPSD 191 (319)
T ss_pred ccEEEEeCccccCCCHHHH-HHHHHHHHHhhCCCCC
Confidence 56666 4457878776654 468999999 999999
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.17 Score=47.48 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=42.4
Q ss_pred ceEEEEcCcccHHHHHHhh-cCCe-EEEeccCCChhHHHHH-----------HHcCC----CcEEeccCCCCCCCC---C
Q 017839 223 RLGIDVGGATGSFAARMKL-YNIT-ILTTTMNLGAPYSEAA-----------ALRGL----VPLHVPLQQRLPLFD---G 282 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae-~gv~-Vv~~~ldl~~~~~e~a-----------~~Rg~----v~~~~g~ae~LPF~D---~ 282 (365)
.+.+|||||.|......+- .++. ++|+.+. +...+.+ ...|. +.+..++.-.-++.+ .
T Consensus 44 dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~--~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 44 DVFYDLGSGVGNVVFQAALQTGCKKSVGIEIL--PELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--SEEEEEE-S--HHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCcEEEEEEec--hHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 4679999999987555443 3554 7776554 2221111 11122 233444322212111 2
Q ss_pred ccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 283 VLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.-|+|+++... + ++ .+...|.++.+-||||-
T Consensus 122 ~AdvVf~Nn~~--F-~~-~l~~~L~~~~~~lk~G~ 152 (205)
T PF08123_consen 122 DADVVFVNNTC--F-DP-DLNLALAELLLELKPGA 152 (205)
T ss_dssp C-SEEEE--TT--T--H-HHHHHHHHHHTTS-TT-
T ss_pred CCCEEEEeccc--c-CH-HHHHHHHHHHhcCCCCC
Confidence 35899988753 2 22 34567899999999998
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.53 Score=46.62 Aligned_cols=116 Identities=14% Similarity=0.187 Sum_probs=72.4
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHH----HcCC---CcEEeccCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAA----LRGL---VPLHVPLQQR 276 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~----~Rg~---v~~~~g~ae~ 276 (365)
+|-.+|++.| |. +||+-|.|+|+++-.+++. + ..+.+ +|+++...+.+. +.|+ +.+..-|...
T Consensus 96 ~I~~~L~i~P---Gs--vV~EsGTGSGSlShaiaraV~ptGhl~t--fefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 96 MILSMLEIRP---GS--VVLESGTGSGSLSHAIARAVAPTGHLYT--FEFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHhcCCC---CC--EEEecCCCcchHHHHHHHhhCcCcceEE--EEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 5666777777 65 4699999999999888764 2 24554 344444333333 3343 4555556555
Q ss_pred CCC--CCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC--------CcchhhhhHHHHHHhhCCcee
Q 017839 277 LPL--FDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG--------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 277 LPF--~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG--------~~~~l~~~~~~~l~~~gfk~i 338 (365)
.-| .+..+|.|+--. ...|. ++--.+.+||-+| -.+++.+ -.+.++.+||..+
T Consensus 169 ~GF~~ks~~aDaVFLDl-PaPw~-------AiPha~~~lk~~g~r~csFSPCIEQvqr-tce~l~~~gf~~i 231 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFLDL-PAPWE-------AIPHAAKILKDEGGRLCSFSPCIEQVQR-TCEALRSLGFIEI 231 (314)
T ss_pred CCccccccccceEEEcC-CChhh-------hhhhhHHHhhhcCceEEeccHHHHHHHH-HHHHHHhCCCceE
Confidence 544 468899998632 22443 4555667999999 2355544 4567778888654
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.8 Score=41.08 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=59.1
Q ss_pred eEEEEcCcccHHHHHHh--hcCCeEEEeccC-CChhHHHHH-HHcCC--CcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMK--LYNITILTTTMN-LGAPYSEAA-ALRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~La--e~gv~Vv~~~ld-l~~~~~e~a-~~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.++|||.|.|.-+.-|+ .....++=.+-. --..+.+.+ .+-|+ +.++.+-+|.+.-...-||+|+|+-+- .
T Consensus 70 ~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-~-- 146 (215)
T COG0357 70 RVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-S-- 146 (215)
T ss_pred EEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-c--
Confidence 35999999998777765 223332211111 112333333 33354 556777777775222229999997653 2
Q ss_pred ChhhHHHHHHHHHhhhCCCC-----Ccchhhh---hHHHHHHhhCCceeeEEe
Q 017839 298 PVIMMEFLFYDVDRVLRGGG-----KASDLEN---VYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG-----~~~~l~~---~~~~~l~~~gfk~i~w~v 342 (365)
+...+.=....||+|| ......+ .........|+...+...
T Consensus 147 ----L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 147 ----LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred ----hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEE
Confidence 2223333567888878 1122111 134456666666555443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=92.69 E-value=1 Score=43.27 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=71.7
Q ss_pred EEEEcCcccHHHHHHhhc-C--CeEEEeccCC--ChhHHHHHHHcC-CCcEEeccCCC---CCCCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKLY-N--ITILTTTMNL--GAPYSEAAALRG-LVPLHVPLQQR---LPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl--~~~~~e~a~~Rg-~v~~~~g~ae~---LPF~D~SFDlV~s~~~L~~ 295 (365)
||-+|..+|+...++++- | ..|.++..+. .....+.+..|. ++|++. |+.. -...=+.+|+|++--+
T Consensus 77 VLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~-DAr~P~~Y~~lv~~VDvI~~DVa--- 152 (229)
T PF01269_consen 77 VLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILE-DARHPEKYRMLVEMVDVIFQDVA--- 152 (229)
T ss_dssp EEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES--TTSGGGGTTTS--EEEEEEE-S---
T ss_pred EEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeec-cCCChHHhhcccccccEEEecCC---
Confidence 499999999998888764 2 3455544431 112234455664 455544 4321 1112338999988543
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------------CcchhhhhHHHH---HHhhCCceeeEEeecCCCC-CCCceEEEEee
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------------KASDLENVYGPL---IGKLGYKKVKWATANKPNS-KNGEVYLTALL 359 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------------~~~~l~~~~~~~---l~~~gfk~i~w~v~~K~d~-~~~~~y~sall 359 (365)
.++..+.++.....-||+|| .-.+-++++.+- ++..||+.+.-.. +++ ++|..-+-+.+
T Consensus 153 --Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~---LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 153 --QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQIT---LEPYERDHAMVVGRY 227 (229)
T ss_dssp --STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE----TTTSTTEEEEEEEE
T ss_pred --ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEec---cCCCCCCcEEEEEEe
Confidence 22346789999999999999 112223455544 4455777665432 233 56776666666
Q ss_pred ec
Q 017839 360 QK 361 (365)
Q Consensus 360 ~K 361 (365)
.|
T Consensus 228 ~~ 229 (229)
T PF01269_consen 228 RK 229 (229)
T ss_dssp --
T ss_pred cC
Confidence 54
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.16 Score=51.11 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=35.0
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR 276 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~ 276 (365)
+||+|||+|.|+..|++....|++++. +..+.+.+.+ .|+ +.++.+++.+
T Consensus 201 vlDl~~G~G~~sl~la~~~~~v~~vE~--~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 201 LLELYCGNGNFSLALAQNFRRVLATEI--AKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred EEEEeccccHHHHHHHHhCCEEEEEEC--CHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 599999999999999887667776544 4566555443 333 5677777654
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.32 Score=42.25 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=24.2
Q ss_pred ceEEEEcCcccHHHHHHhh-----c-CCeEEEeccC
Q 017839 223 RLGIDVGGATGSFAARMKL-----Y-NITILTTTMN 252 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae-----~-gv~Vv~~~ld 252 (365)
..++|+|||-|.++..|+. . +..|++++.+
T Consensus 27 ~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~ 62 (141)
T PF13679_consen 27 ITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCN 62 (141)
T ss_pred CEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 4569999999999999988 3 6788876555
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.2 Score=50.30 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=38.6
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRL 277 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~L 277 (365)
+++.+++..+.. +. + +||+-||+|+|+..|++....|+|++.+ +.+.+.|. ..++ +.|+.++++++
T Consensus 185 l~~~~~~~l~~~-~~-~-vlDlycG~G~fsl~la~~~~~V~gvE~~--~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 185 LYEQALEWLDLS-KG-D-VLDLYCGVGTFSLPLAKKAKKVIGVEIV--EEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHCTT--TT-E-EEEES-TTTCCHHHHHCCSSEEEEEES---HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHhhcC-CC-c-EEEEeecCCHHHHHHHhhCCeEEEeeCC--HHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 455555544321 22 3 5999999999999999988888876543 45544433 3343 45666655443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.4 Score=42.19 Aligned_cols=92 Identities=16% Similarity=0.103 Sum_probs=54.9
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH------c----CCCcEEeccCCC-CCCCCC-ccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL------R----GLVPLHVPLQQR-LPLFDG-VLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~------R----g~v~~~~g~ae~-LPF~D~-SFDlV~ 288 (365)
+.||=||.|.|..+..+.+.. ..|..+++| +...+.+.+ . ..+.++.+|+.. |--.++ .||+|+
T Consensus 78 ~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD--~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 78 KRVLIIGGGDGGTARELLKHPPVESITVVEID--PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp -EEEEEESTTSHHHHHHTTSTT-SEEEEEES---HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CceEEEcCCChhhhhhhhhcCCcceEEEEecC--hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 456999999999999998864 344444454 455554432 1 245677777532 222233 999999
Q ss_pred EcchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
.-..- ...+... -...+..+.|.|+|||
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~G 185 (246)
T PF01564_consen 156 VDLTD-PDGPAPNLFTREFYQLCKRRLKPDG 185 (246)
T ss_dssp EESSS-TTSCGGGGSSHHHHHHHHHHEEEEE
T ss_pred EeCCC-CCCCcccccCHHHHHHHHhhcCCCc
Confidence 73321 1111111 1357899999999999
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.2 Score=45.58 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=45.3
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.++|+|||+|-+....+-. +-.|+|+++| ....+..... . .+.+.+.+...+-+.-+.||.++.+--+
T Consensus 51 kl~DLgcgcGmLs~a~sm~~~e~vlGfDId--peALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 51 KLKDLGCGCGMLSIAFSMPKNESVLGFDID--PEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred chhhhcCchhhhHHHhhcCCCceEEeeecC--HHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 3599999999877444433 3567776665 4444432211 1 1467888877887788999999987654
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.2 Score=42.53 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=22.1
Q ss_pred EEEEcCcccHHHHHHhhcCC--eEEEeccC
Q 017839 225 GIDVGGATGSFAARMKLYNI--TILTTTMN 252 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv--~Vv~~~ld 252 (365)
+||||||+|.++..+++.+. ++++.+.+
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~ 31 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPL 31 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecC
Confidence 69999999999999988753 57765443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.18 Score=53.32 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=36.7
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHH----HHHcCC--CcEEeccCCCC
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEA----AALRGL--VPLHVPLQQRL 277 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~----a~~Rg~--v~~~~g~ae~L 277 (365)
.++||+.||||.++..++++-..|+|+.++. ...+. |+..|+ ..|+.|-+|++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~--~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISP--DAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecCh--hhcchhhhcchhcCccceeeeecchhhc
Confidence 5679999999999999998767788876653 23333 333444 46788855553
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.58 Score=45.08 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=55.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhH--HHHHHHcC---CCcEEeccC-CCCC-----CCCCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPY--SEAAALRG---LVPLHVPLQ-QRLP-----LFDGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~--~e~a~~Rg---~v~~~~g~a-e~LP-----F~D~SFDlV~s 289 (365)
+.||||.=||.-+..+|.. +..|++.++|..... .++....| ++.+.+|.+ +.|+ ...++||+|+.
T Consensus 76 ~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv 155 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFV 155 (237)
T ss_pred eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEE
Confidence 4599999888765555543 557777666632111 23333334 477888754 2221 36899999986
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+|-+.- -..+.+.-|.||+||
T Consensus 156 ----DadK~nY--~~y~e~~l~Llr~GG 177 (237)
T KOG1663|consen 156 ----DADKDNY--SNYYERLLRLLRVGG 177 (237)
T ss_pred ----ccchHHH--HHHHHHHHhhccccc
Confidence 3555432 257789999999999
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.38 E-value=1.1 Score=42.55 Aligned_cols=120 Identities=18% Similarity=0.082 Sum_probs=60.8
Q ss_pred eEEEEcCcccHHHHHHhhc-CC--eEEEecc-CC-------ChhHHHHHHHcCC--CcEEeccCCCCC-------CCCCc
Q 017839 224 LGIDVGGATGSFAARMKLY-NI--TILTTTM-NL-------GAPYSEAAALRGL--VPLHVPLQQRLP-------LFDGV 283 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv--~Vv~~~l-dl-------~~~~~e~a~~Rg~--v~~~~g~ae~LP-------F~D~S 283 (365)
+|+|+=-|.|.|++.++.. |. .|.+..- +. .+.+...+.+.+. +..+....-.|+ .++++
T Consensus 51 tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~~~~ 130 (238)
T COG4798 51 TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVPTAQ 130 (238)
T ss_pred EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccccch
Confidence 5799999999999988764 22 3332211 11 1111111111111 112222222233 23444
Q ss_pred cceeEEcchhhcccChhhHHHHHHHHHhhhCCCC------C----c---chh-------hhhHHHHHHhhCCceeeEE--
Q 017839 284 LDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG------K----A---SDL-------ENVYGPLIGKLGYKKVKWA-- 341 (365)
Q Consensus 284 FDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG------~----~---~~l-------~~~~~~~l~~~gfk~i~w~-- 341 (365)
+|.+....-++ + ...+.+..+++++||||| + + .+. ........+..||+...-.
T Consensus 131 ~yhdmh~k~i~---~-~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 131 NYHDMHNKNIH---P-ATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred hhhhhhccccC---c-chHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeehh
Confidence 44444433332 2 345679999999999999 0 0 010 1234567788999764322
Q ss_pred eecCCC
Q 017839 342 TANKPN 347 (365)
Q Consensus 342 v~~K~d 347 (365)
.+++.|
T Consensus 207 laNp~D 212 (238)
T COG4798 207 LANPDD 212 (238)
T ss_pred hcCCCC
Confidence 445544
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.38 E-value=1.3 Score=44.83 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCCceEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHH----HHHc---CCCcEEeccCCCCCCCCCccceeEEcc
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEA----AALR---GLVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~----a~~R---g~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
|. +|||+=+|.|-|+..++..|.. |++.++|. ...+. +... +.+..+.||+..+++.-+.||-|++..
T Consensus 189 GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP--~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 189 GE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINP--DAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred CC--EEEEccCCcccchhhhhhcCCceEEEEecCH--HHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 64 4699999999999999998854 77767663 33333 2222 235578889888887779999999987
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC--------Ccchh----hhhHHHHHHhhCC--ceeeEEeecCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG--------KASDL----ENVYGPLIGKLGY--KKVKWATANKP 346 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG--------~~~~l----~~~~~~~l~~~gf--k~i~w~v~~K~ 346 (365)
.-. ...++-...+.+|+|| ..++. .+.......+.|| ....|+..++-
T Consensus 265 p~~-------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~Vksy 326 (341)
T COG2520 265 PKS-------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSY 326 (341)
T ss_pred CCc-------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEeccc
Confidence 431 1246667788899999 12221 1223445556665 34566655554
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.45 Score=49.53 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=45.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHH----HHcCC--CcEEeccCCCCCCC---CCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAA----ALRGL--VPLHVPLQQRLPLF---DGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a----~~Rg~--v~~~~g~ae~LPF~---D~SFDlV~s 289 (365)
.+||+=||.|+|+..|+++...|+|+.++ +++.+.+ +..|+ +.|..++++++.-. ...||.|+.
T Consensus 296 ~vlDlYCGvG~f~l~lA~~~~~V~gvEi~--~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 296 RVLDLYCGVGTFGLPLAKRVKKVHGVEIS--PEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred EEEEeccCCChhhhhhcccCCEEEEEecC--HHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 45999999999999999888888876654 4444433 23343 56777888776533 358899875
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.9 Score=44.05 Aligned_cols=92 Identities=15% Similarity=0.175 Sum_probs=49.6
Q ss_pred eEEEEcCcccHHHHHHhh---------cCCeEEEeccCCChhHHHHHH----HcCC----CcEEeccCCCCC-CC-CCcc
Q 017839 224 LGIDVGGATGSFAARMKL---------YNITILTTTMNLGAPYSEAAA----LRGL----VPLHVPLQQRLP-LF-DGVL 284 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae---------~gv~Vv~~~ldl~~~~~e~a~----~Rg~----v~~~~g~ae~LP-F~-D~SF 284 (365)
.|||-+||+|.|...+.+ ....+.|.++| ......+. -+|. ..+..++.-.-+ +. ...|
T Consensus 49 ~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~--~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 126 (311)
T PF02384_consen 49 SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEID--PEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKF 126 (311)
T ss_dssp EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES---HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--E
T ss_pred eeechhhhHHHHHHHHHHhhcccccccccceeEeecCc--HHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 459999999999877765 24667776665 33332221 2332 235555543323 33 5899
Q ss_pred ceeEEcchhhc--ccCh----------------hhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNR--WIPV----------------IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~--w~d~----------------~~le~aL~Ei~RVLRPGG 317 (365)
|+|+++--+.. |... ..--.++.-+.+.|++||
T Consensus 127 D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G 177 (311)
T PF02384_consen 127 DVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGG 177 (311)
T ss_dssp EEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEE
T ss_pred ccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccc
Confidence 99998763321 2110 011136677999999999
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.6 Score=49.11 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=15.9
Q ss_pred eEEEEcCcccHHHHHHhhc
Q 017839 224 LGIDVGGATGSFAARMKLY 242 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~ 242 (365)
.+||.|||+|.|...++++
T Consensus 34 ~ilDP~cGsG~fl~~~~~~ 52 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLKK 52 (524)
T ss_pred EEEeCCCCccHHHHHHHHH
Confidence 3599999999998888754
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.87 E-value=2.5 Score=43.46 Aligned_cols=94 Identities=16% Similarity=0.101 Sum_probs=57.7
Q ss_pred cCceecccCCccc---hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCC--------------------------
Q 017839 194 SSSFLAFKSELDL---PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNI-------------------------- 244 (365)
Q Consensus 194 ~~~W~~~~g~~~f---~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv-------------------------- 244 (365)
+..|+...|...+ +...|+.+....++ +..+|==||+|+++...+-.+.
T Consensus 163 kRGyR~~~g~ApLketLAaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~ 240 (381)
T COG0116 163 KRGYRVYDGPAPLKETLAAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKL 240 (381)
T ss_pred hccccccCCCCCchHHHHHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHH
Confidence 4456666664443 23334433322223 3459999999999876665442
Q ss_pred ---------------eEEEeccCCChhHHHHHH----HcC---CCcEEeccCCCCCCCCCccceeEEcc
Q 017839 245 ---------------TILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 245 ---------------~Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.++++++| ..+.+.|. +.| .|.|.++++++|+=+-+.+|+|+|+-
T Consensus 241 ~~ea~~~a~~~~~~~~~~G~Did--~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 241 REEAEERARRGKELPIIYGSDID--PRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred HHHHHHHHhhcCccceEEEecCC--HHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 14465544 55665543 234 37899999998863338999999985
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=88.40 E-value=7.2 Score=36.58 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=60.3
Q ss_pred EEEEcCcccHHHHHHhhcCC--eEEEeccCCChhHHHH----HHHcC---CCcEEeccC-CCCCCCCCccceeEEcchhh
Q 017839 225 GIDVGGATGSFAARMKLYNI--TILTTTMNLGAPYSEA----AALRG---LVPLHVPLQ-QRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv--~Vv~~~ldl~~~~~e~----a~~Rg---~v~~~~g~a-e~LPF~D~SFDlV~s~~~L~ 294 (365)
+.||||-.|.+..+|.++|. .++.++++ +...+. +...| .+.+..|++ +.|+ +.+..|.|+...+--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~--~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDIN--PGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESS--HHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCH
Confidence 48999999999999999985 45554444 333333 23344 366777875 4444 222368888655421
Q ss_pred cccChhhHHHHHHHHHhhhCCCC-----CcchhhhhHHHHHHhhCCceeeEEeec
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG-----KASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
. .+...|.+...+++..- .... ......++...||..+.-.+..
T Consensus 78 ~-----lI~~ILe~~~~~~~~~~~lILqP~~~-~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 78 E-----LIIEILEAGPEKLSSAKRLILQPNTH-AYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp H-----HHHHHHHHTGGGGTT--EEEEEESS--HHHHHHHHHHTTEEEEEEEEEE
T ss_pred H-----HHHHHHHhhHHHhccCCeEEEeCCCC-hHHHHHHHHHCCCEEEEeEEEe
Confidence 1 12235555555555443 1111 1236679999999887665544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.37 E-value=2.2 Score=43.20 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=29.1
Q ss_pred hHHHHhhhcccc---CCCCceEEEEcCcccHHHHHHhhcCCeEEE
Q 017839 207 PVTQFLDLAKAA---NSVIRLGIDVGGATGSFAARMKLYNITILT 248 (365)
Q Consensus 207 ~I~~vL~~~p~~---~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~ 248 (365)
.|+++-.+-|.. ...++| |==|||+|.++..|+..|..+-|
T Consensus 134 ii~~l~~lfp~~~~~r~ki~i-LvPGaGlGRLa~dla~~G~~~qG 177 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRI-LVPGAGLGRLAYDLACLGFKCQG 177 (369)
T ss_pred HHHHHHhhCCCccccccCceE-EecCCCchhHHHHHHHhcccccc
Confidence 677766665531 134665 99999999999999988755433
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.13 E-value=3.2 Score=39.38 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=63.4
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHcCCCcEEecc----------CCCCCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALRGLVPLHVPL----------QQRLPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~----------ae~LPF~D~SFDlV~s~ 290 (365)
+|||+||..|+++.-..++ + ..|+|+++- + ...-+|...+...+ -|.| ++...|+|.+-
T Consensus 72 ~VlD~G~APGsWsQVavqr~~p~g~v~gVDll-h-----~~p~~Ga~~i~~~dvtdp~~~~ki~e~l--p~r~VdvVlSD 143 (232)
T KOG4589|consen 72 TVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL-H-----IEPPEGATIIQGNDVTDPETYRKIFEAL--PNRPVDVVLSD 143 (232)
T ss_pred EEEEccCCCChHHHHHHHhhCCCceEEEEeee-e-----ccCCCCcccccccccCCHHHHHHHHHhC--CCCcccEEEec
Confidence 4599999999999888776 2 345554321 0 01112221111111 1334 46788888874
Q ss_pred chhhccc-----ChhhH----HHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceE
Q 017839 291 HAVNRWI-----PVIMM----EFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVY 354 (365)
Q Consensus 291 ~~L~~w~-----d~~~l----e~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y 354 (365)
.. .+-. |.... ..++.=.--.++|+| .+++-.+.-..|.+. |..++-.--+..-.+..|.|
T Consensus 144 Ma-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~--f~~Vk~vKP~Asr~eS~E~y 220 (232)
T KOG4589|consen 144 MA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAV--FTNVKKVKPDASRDESAETY 220 (232)
T ss_pred cC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHH--hhhcEeeCCcccccccccee
Confidence 42 1111 11100 112222334578999 444433322234444 44443221111112678999
Q ss_pred EEEeeecCC
Q 017839 355 LTALLQKPV 363 (365)
Q Consensus 355 ~sall~KP~ 363 (365)
+-++=-|+-
T Consensus 221 ~v~~~~k~~ 229 (232)
T KOG4589|consen 221 LVCLNFKGN 229 (232)
T ss_pred eeeeeccCc
Confidence 988877764
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=0.95 Score=43.95 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=38.4
Q ss_pred EEeccCCCC--CCCCCccceeEEcc--hh--------hcccCh---hhHHHHHHHHHhhhCCCC------CcchhhhhHH
Q 017839 269 LHVPLQQRL--PLFDGVLDVVRCGH--AV--------NRWIPV---IMMEFLFYDVDRVLRGGG------KASDLENVYG 327 (365)
Q Consensus 269 ~~~g~ae~L--PF~D~SFDlV~s~~--~L--------~~w~d~---~~le~aL~Ei~RVLRPGG------~~~~l~~~~~ 327 (365)
++.+|+..+ .+++++||+|++.= .+ ..|... +-++..+.|+.||||||| ....+. +.
T Consensus 11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~--~~ 88 (284)
T PRK11524 11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMP--FI 88 (284)
T ss_pred EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhh--HH
Confidence 445554332 35688888888831 11 111100 113468899999999999 222221 34
Q ss_pred HHHHhhCCceeeE
Q 017839 328 PLIGKLGYKKVKW 340 (365)
Q Consensus 328 ~~l~~~gfk~i~w 340 (365)
.++.+.||....+
T Consensus 89 ~~~~~~~f~~~~~ 101 (284)
T PRK11524 89 DLYCRKLFTIKSR 101 (284)
T ss_pred HHHHhcCcceEEE
Confidence 4555667754433
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.05 E-value=0.58 Score=44.35 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=51.0
Q ss_pred ceEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHH-----HHcCC-CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 223 RLGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAA-----ALRGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a-----~~Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
+.|||+|.|+|-.+..-+..| ..|+..+++ +....+ ++.|. +.+.. .++=+.+..||+|..+.++.+
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~---P~~~~ai~lNa~angv~i~~~~---~d~~g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADID---PWLEQAIRLNAAANGVSILFTH---ADLIGSPPAFDLLLAGDLFYN 154 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCC---hHHHHHhhcchhhccceeEEee---ccccCCCcceeEEEeeceecC
Confidence 346999999998877776666 344544554 333222 22332 22222 223348889999999998754
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
-. .....+. +.+-|+-.|
T Consensus 155 ~~---~a~~l~~-~~~~l~~~g 172 (218)
T COG3897 155 HT---EADRLIP-WKDRLAEAG 172 (218)
T ss_pred ch---HHHHHHH-HHHHHHhCC
Confidence 32 1223444 777777777
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=86.66 E-value=1.2 Score=45.53 Aligned_cols=86 Identities=12% Similarity=0.046 Sum_probs=55.0
Q ss_pred CceEEEEcCcccHHHHHHhhc--CC-eEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCC-CCCCCccceeEEcc
Q 017839 222 IRLGIDVGGATGSFAARMKLY--NI-TILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRL-PLFDGVLDVVRCGH 291 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~--gv-~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~L-PF~D~SFDlV~s~~ 291 (365)
++ +||+-||+|.++.+++.+ |+ .|+..++| ....+.+.+ .+. +.++.+++..+ .-..+.||+|..-=
T Consensus 46 ~~-vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n--~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 IN-IADALSASGIRAIRYAHEIEGVREVFANDIN--PKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CE-EEECCCchhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 44 599999999999999987 53 45654544 444444322 232 34666665543 22246799998732
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+ .. ....+..+.+.+++||
T Consensus 123 -f---Gs---~~~fld~al~~~~~~g 141 (374)
T TIGR00308 123 -F---GT---PAPFVDSAIQASAERG 141 (374)
T ss_pred -C---CC---cHHHHHHHHHhcccCC
Confidence 2 11 1247888999999999
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.49 E-value=1 Score=43.40 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=51.8
Q ss_pred EEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHcC-----CCcEEeccCC-CCC-CCCCccceeEEcchhh
Q 017839 225 GIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALRG-----LVPLHVPLQQ-RLP-LFDGVLDVVRCGHAVN 294 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~Rg-----~v~~~~g~ae-~LP-F~D~SFDlV~s~~~L~ 294 (365)
||.||-|-|.....+.++. ..++. .+....+....-| .|-.+.|.=| -+| .+|+.||.|.--..-.
T Consensus 105 vLnVGFGMgIidT~iQe~~p~~H~IiE----~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e 180 (271)
T KOG1709|consen 105 VLNVGFGMGIIDTFIQEAPPDEHWIIE----AHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSE 180 (271)
T ss_pred EEEeccchHHHHHHHhhcCCcceEEEe----cCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechhh
Confidence 4999999999888887764 33442 2233333333322 2333444211 122 4699999998533223
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. +++......+.|.|||||
T Consensus 181 ~y---Edl~~~hqh~~rLLkP~g 200 (271)
T KOG1709|consen 181 LY---EDLRHFHQHVVRLLKPEG 200 (271)
T ss_pred HH---HHHHHHHHHHhhhcCCCc
Confidence 32 234567788999999999
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=85.94 E-value=0.41 Score=44.05 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.6
Q ss_pred CCCccceeEEcchhhccc--------ChhhHHHHHHHHHhhhCCCC
Q 017839 280 FDGVLDVVRCGHAVNRWI--------PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 280 ~D~SFDlV~s~~~L~~w~--------d~~~le~aL~Ei~RVLRPGG 317 (365)
..++||.+.|..+++|.. ++..-..++.++.|||||||
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG 105 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGG 105 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCC
Confidence 467899999999997754 12222468999999999999
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.45 E-value=1.3 Score=41.15 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=62.2
Q ss_pred eEEEEcCcccHHHHHHhhcCCe---EEEeccCC-ChhHHHHHHHcCC------C---cEEeccCCCCCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYNIT---ILTTTMNL-GAPYSEAAALRGL------V---PLHVPLQQRLPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~---Vv~~~ldl-~~~~~e~a~~Rg~------v---~~~~g~ae~LPF~D~SFDlV~s~ 290 (365)
.||++|.|--.++..|....+. |.-++=|. +....+.+..++. + .+.. ...+.--..++||+|.|+
T Consensus 32 ~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~-~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 32 RILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLI-WGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHH-hhhHHHHhhCcccEEEec
Confidence 3499999987777777654322 22112111 1111233333321 0 1111 122333456799999999
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC--------CcchhhhhHHHHHHhhCCce
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG--------KASDLENVYGPLIGKLGYKK 337 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG--------~~~~l~~~~~~~l~~~gfk~ 337 (365)
.|+- +. +.-+..+.-|.+.|||.| .+..+.+ +.+..+..||..
T Consensus 111 DClF-fd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~k-F~de~~~~gf~v 161 (201)
T KOG3201|consen 111 DCLF-FD--EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQK-FLDEVGTVGFTV 161 (201)
T ss_pred cchh-HH--HHHHHHHHHHHHHhCcccceeEecCcccchHHH-HHHHHHhceeEE
Confidence 9983 32 234578889999999999 2333443 777778888643
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=84.59 E-value=0.66 Score=39.91 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=20.9
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEE
Q 017839 225 GIDVGGATGSFAARMKLYNITILT 248 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~ 248 (365)
-.|||||.|-+.-.|.+.|....|
T Consensus 62 FVDlGCGNGLLV~IL~~EGy~G~G 85 (112)
T PF07757_consen 62 FVDLGCGNGLLVYILNSEGYPGWG 85 (112)
T ss_pred eEEccCCchHHHHHHHhCCCCccc
Confidence 399999999999999988887665
|
; GO: 0008168 methyltransferase activity |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=84.32 E-value=9.9 Score=37.60 Aligned_cols=132 Identities=13% Similarity=0.141 Sum_probs=72.6
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCC-cEEeccCCCCCCC-CCccceeEEcchhhccc-----
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLV-PLHVPLQQRLPLF-DGVLDVVRCGHAVNRWI----- 297 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v-~~~~g~ae~LPF~-D~SFDlV~s~~~L~~w~----- 297 (365)
++|+=||.|.+..-+.+.|..++. +.|.+....+.... ... .++.+|...+... -..+|+++.+.-=..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~-a~e~~~~a~~ty~~-N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~ 78 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVF-ASEIDKYAQKTYEA-NFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKR 78 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEE-EEeCCHHHHHHHHH-hCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhccc
Confidence 489999999999999888877654 23443444333222 111 2344565554321 12489998653111111
Q ss_pred -C-hhhHHHHHHHHHhhh---CCCC----C--------cchhhhhHHHHHHhhCCceeeEEeecCCC---C-CCCceEEE
Q 017839 298 -P-VIMMEFLFYDVDRVL---RGGG----K--------ASDLENVYGPLIGKLGYKKVKWATANKPN---S-KNGEVYLT 356 (365)
Q Consensus 298 -d-~~~le~aL~Ei~RVL---RPGG----~--------~~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~~~~y~s 356 (365)
. .+....++.++.|++ ||.= . ....-+.+...++.+||. +.|.+..-.| + .+..+|+-
T Consensus 79 ~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~-v~~~~l~a~dyGvPQ~R~R~f~i 157 (315)
T TIGR00675 79 KGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYK-VYYKVLNAKDFGVPQNRERIYIV 157 (315)
T ss_pred CCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCE-EEEEEEcHHHCCCCCCccEEEEE
Confidence 0 011224566776766 5544 1 111123356778899996 5666555444 2 57778887
Q ss_pred Eee
Q 017839 357 ALL 359 (365)
Q Consensus 357 all 359 (365)
|..
T Consensus 158 a~r 160 (315)
T TIGR00675 158 GFR 160 (315)
T ss_pred EEe
Confidence 765
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=84.02 E-value=0.37 Score=41.40 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=26.3
Q ss_pred ccceeEEcchhh----cccChhhHHHHHHHHHhhhCCCC
Q 017839 283 VLDVVRCGHAVN----RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 283 SFDlV~s~~~L~----~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.||+|.|..+-- ||.| +.+..++.-+++.|||||
T Consensus 1 ~yDvilclSVtkWIHLn~GD-~Gl~~~f~~~~~~L~pGG 38 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGD-EGLKRFFRRIYSLLRPGG 38 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHH-HHHHHHHHHHHHHEEEEE
T ss_pred CccEEEEEEeeEEEEecCcC-HHHHHHHHHHHHhhCCCC
Confidence 489999988651 3434 568889999999999999
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.08 E-value=4 Score=38.08 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=52.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHHHHH-------cCCCcEEeccCCC-CCCCCC--ccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEAAAL-------RGLVPLHVPLQQR-LPLFDG--VLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~a~~-------Rg~v~~~~g~ae~-LPF~D~--SFDlV~s~~~ 292 (365)
++||+=+|+|.++.....||+. ++-++.| ....+.+.+ .+...++..++.+ |+-... .||+|+.-=-
T Consensus 46 ~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~--~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP 123 (187)
T COG0742 46 RVLDLFAGSGALGLEALSRGAARVVFVEKD--RKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP 123 (187)
T ss_pred EEEEecCCccHhHHHHHhCCCceEEEEecC--HHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence 4599999999999999999854 3433444 333322221 1335566666553 232333 4999997543
Q ss_pred hhcccCh-hhHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPV-IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~-~~le~aL~Ei~RVLRPGG 317 (365)
+. +.-. ......+.+-...|+|||
T Consensus 124 y~-~~l~~~~~~~~~~~~~~~L~~~~ 148 (187)
T COG0742 124 YA-KGLLDKELALLLLEENGWLKPGA 148 (187)
T ss_pred Cc-cchhhHHHHHHHHHhcCCcCCCc
Confidence 32 1110 112223334678899999
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=82.85 E-value=2.1 Score=44.03 Aligned_cols=20 Identities=15% Similarity=0.444 Sum_probs=18.0
Q ss_pred CCCCCccceeEEcchhhcccC
Q 017839 278 PLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 278 PF~D~SFDlV~s~~~L~~w~d 298 (365)
=||++|.+++||++++ ||..
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred ccCCCceEEEEeeccc-eecc
Confidence 4899999999999999 7874
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=82.66 E-value=3.4 Score=41.48 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=14.8
Q ss_pred cCCCCCCCCCccceeEEcchhhcccC
Q 017839 273 LQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 273 ~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.-..==||++|.|++||++++ ||..
T Consensus 97 SFy~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-T-TB-S
T ss_pred hhhhccCCCCceEEEEEechh-hhcc
Confidence 333334899999999999999 7873
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.49 E-value=20 Score=34.42 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=54.6
Q ss_pred EEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHH---HHHHc-CCCcEEeccC---CCCCCCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSE---AAALR-GLVPLHVPLQ---QRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e---~a~~R-g~v~~~~g~a---e~LPF~D~SFDlV~s~~~L~~ 295 (365)
||=+|.-+|+...+++.- | ..+.++.++. .++.+ .+.+| +++|+. +|| ++--+.=+..|+|+.--+
T Consensus 80 VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~-R~~reLl~~a~~R~Ni~PIL-~DA~~P~~Y~~~Ve~VDviy~DVA--- 154 (231)
T COG1889 80 VLYLGAASGTTVSHVSDIVGEGRIYAVEFSP-RPMRELLDVAEKRPNIIPIL-EDARKPEKYRHLVEKVDVIYQDVA--- 154 (231)
T ss_pred EEEeeccCCCcHhHHHhccCCCcEEEEEecc-hhHHHHHHHHHhCCCceeee-cccCCcHHhhhhcccccEEEEecC---
Confidence 499999999999888874 2 2344444432 34544 34455 356654 343 222233456888887432
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+++.+.+...+..-||+||
T Consensus 155 --Qp~Qa~I~~~Na~~FLk~~G 174 (231)
T COG1889 155 --QPNQAEILADNAEFFLKKGG 174 (231)
T ss_pred --CchHHHHHHHHHHHhcccCC
Confidence 23456788999999999999
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.37 E-value=4 Score=41.38 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=51.4
Q ss_pred EEEcC-cccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEecc-CCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 226 IDVGG-ATGSFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPL-QQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 226 LDIGC-GtG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~-ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
+=+|+ |.|..|..+++ .|.+|+..+ .+....+++.+-|--.++.+. ...+.--.+.||+|+..-. .
T Consensus 171 ~I~G~GGlGh~avQ~Aka~ga~Via~~--~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-------- 239 (339)
T COG1064 171 AVVGAGGLGHMAVQYAKAMGAEVIAIT--RSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-------- 239 (339)
T ss_pred EEECCcHHHHHHHHHHHHcCCeEEEEe--CChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--------
Confidence 44554 67889999988 588888654 445566777776654444432 2222212223999987654 2
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
..+....+.||+||
T Consensus 240 -~~~~~~l~~l~~~G 253 (339)
T COG1064 240 -ATLEPSLKALRRGG 253 (339)
T ss_pred -hhHHHHHHHHhcCC
Confidence 35677899999999
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 365 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.68 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.64 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.62 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.62 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.59 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.58 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.58 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.58 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.57 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.57 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.57 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.57 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.57 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.56 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.56 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.56 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.56 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.56 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.56 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.56 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.55 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.55 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.55 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.54 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.53 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.53 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.52 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.52 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.52 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.52 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.52 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.51 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.51 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.51 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.51 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.51 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.5 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.5 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.5 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.5 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.49 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.47 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.47 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.46 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.46 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.46 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.46 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.45 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.45 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.44 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.44 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.44 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.44 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.44 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.43 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.43 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.43 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.43 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.42 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.41 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.41 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.41 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.41 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.4 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.4 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.4 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.4 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.39 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.39 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.39 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.38 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.38 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.37 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.35 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.32 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.32 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.31 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.31 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.3 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.3 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.3 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.29 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.29 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.29 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.29 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.28 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.27 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.27 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.27 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.27 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.26 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.26 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.25 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.25 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.25 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.25 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.25 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.24 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.24 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.23 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.23 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.22 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.22 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.22 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.21 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.21 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.21 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.21 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.2 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.2 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.2 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.2 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.19 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.17 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.16 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.16 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.15 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.15 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.15 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.15 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.14 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.14 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.14 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.14 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.14 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.13 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.13 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.13 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.12 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.12 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.12 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.11 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.11 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.1 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.1 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.09 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.09 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.09 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.09 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.08 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.08 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.08 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.07 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.07 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.06 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.06 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.05 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.04 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.03 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.03 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.02 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.02 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.0 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.99 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.99 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.98 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.97 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.97 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.95 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.94 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.93 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.91 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.91 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.91 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.9 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.9 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.9 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.89 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.88 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.88 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.88 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.88 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.87 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.87 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.87 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.86 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.86 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.85 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.84 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.84 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.84 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.84 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.83 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.83 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.83 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.82 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.81 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.81 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.8 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.79 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.79 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.79 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.78 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.78 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.77 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.76 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.76 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.76 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.75 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.75 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.75 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.73 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.73 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.73 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.72 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.71 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.7 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.7 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.68 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.67 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.66 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.66 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.65 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.65 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.65 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.64 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.64 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.64 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.63 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.63 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.62 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.6 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.6 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.58 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.58 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.58 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.57 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.56 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.56 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.56 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.56 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.56 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.54 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.54 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.53 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.49 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.47 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.45 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.45 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.44 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.43 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.37 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.33 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.29 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.28 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.27 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.27 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.26 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.25 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.23 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.23 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.2 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.13 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.12 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.06 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.03 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.96 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.94 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.93 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.92 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.92 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.92 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.9 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.89 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.89 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 97.86 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.86 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.76 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.68 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.57 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.55 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.52 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.49 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.49 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.26 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.16 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.16 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.12 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.09 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 96.95 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.93 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.72 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 96.6 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 96.44 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 96.37 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.16 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 95.96 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.67 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 95.49 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 95.37 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 95.28 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 94.4 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 93.99 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 93.69 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 93.22 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 92.61 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 91.99 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 91.89 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 91.47 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 91.04 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 89.44 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 88.46 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 88.06 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 86.65 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 85.66 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 83.71 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 82.63 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 82.33 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-17 Score=154.20 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=75.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
.+||||||||.++..|++++..|+++ |+++.|.+.+.++..+.+.+++++.+||++++||+|+|..++ ||.+. +
T Consensus 42 ~vLDvGcGtG~~~~~l~~~~~~v~gv--D~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~~~---~ 115 (257)
T 4hg2_A 42 DALDCGCGSGQASLGLAEFFERVHAV--DPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWFDL---D 115 (257)
T ss_dssp EEEEESCTTTTTHHHHHTTCSEEEEE--ESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TTCCH---H
T ss_pred CEEEEcCCCCHHHHHHHHhCCEEEEE--eCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeeh-hHhhH---H
Confidence 35999999999999999999888875 455777766555556788999999999999999999999999 67753 4
Q ss_pred HHHHHHHhhhCCCC
Q 017839 304 FLFYDVDRVLRGGG 317 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG 317 (365)
.++.|+.|||||||
T Consensus 116 ~~~~e~~rvLkpgG 129 (257)
T 4hg2_A 116 RFWAELRRVARPGA 129 (257)
T ss_dssp HHHHHHHHHEEEEE
T ss_pred HHHHHHHHHcCCCC
Confidence 69999999999999
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-16 Score=140.67 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=88.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.|||||||+|.++..+++++..++++ |++..+.+.+.++ | .+.++.++++.+||++++||+|++..+++|+.
T Consensus 40 ~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~ 117 (260)
T 1vl5_A 40 EVLDVATGGGHVANAFAPFVKKVVAF--DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFP 117 (260)
T ss_dssp EEEEETCTTCHHHHHHGGGSSEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCS
T ss_pred EEEEEeCCCCHHHHHHHHhCCEEEEE--eCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhHhcC
Confidence 45999999999999999988787765 4556777665443 3 36788899999999999999999999998876
Q ss_pred ChhhHHHHHHHHHhhhCCCC--------C-cc-h--------------------hhhhHHHHHHhhCCceeeEEee
Q 017839 298 PVIMMEFLFYDVDRVLRGGG--------K-AS-D--------------------LENVYGPLIGKLGYKKVKWATA 343 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG--------~-~~-~--------------------l~~~~~~~l~~~gfk~i~w~v~ 343 (365)
+. ..+|.|+.|+||||| . .. . -.+.+..++++.||+.+.+...
T Consensus 118 d~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 118 NP---ASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp CH---HHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred CH---HHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 53 479999999999999 0 00 0 0124678899999988766543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=133.34 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=102.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
.+||||||+|.++..++++|..+++++ ++..+.+.+.++-.+.+..++...+| .+++||+|++..+++|+. .+...
T Consensus 46 ~vLDiGcG~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-~~~~~ 121 (211)
T 3e23_A 46 KILELGCGAGYQAEAMLAAGFDVDATD--GSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVP-RDELA 121 (211)
T ss_dssp EEEESSCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSC-HHHHH
T ss_pred cEEEECCCCCHHHHHHHHcCCeEEEEC--CCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcC-HHHHH
Confidence 459999999999999999988888754 45677777766534677888999999 899999999999998875 34566
Q ss_pred HHHHHHHhhhCCCC-------Ccc-------------hhhhhHHHHHHhhC-CceeeEEeecCCCC-CCCceEEEEeeec
Q 017839 304 FLFYDVDRVLRGGG-------KAS-------------DLENVYGPLIGKLG-YKKVKWATANKPNS-KNGEVYLTALLQK 361 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG-------~~~-------------~l~~~~~~~l~~~g-fk~i~w~v~~K~d~-~~~~~y~sall~K 361 (365)
.++.++.|+||||| ... --.+.+..++++.| |+.+.......... ...+.++.++--|
T Consensus 122 ~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~ 201 (211)
T 3e23_A 122 DVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRK 201 (211)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCCceEEEEEEec
Confidence 89999999999999 100 01235788999999 99988775443322 3345677666666
Q ss_pred C
Q 017839 362 P 362 (365)
Q Consensus 362 P 362 (365)
|
T Consensus 202 ~ 202 (211)
T 3e23_A 202 P 202 (211)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=136.02 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=90.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCC--CCCCCccceeEEcchhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL--PLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L--PF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
.|||||||+|.++..++++|..|+++ |++..+.+.+.++ +.++.+++..+ ||++++||+|+|..+++|+.+ +.
T Consensus 44 ~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~-~~ 118 (240)
T 3dli_A 44 RVLDIGCGRGEFLELCKEEGIESIGV--DINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP-ER 118 (240)
T ss_dssp CEEEETCTTTHHHHHHHHHTCCEEEE--CSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG-GG
T ss_pred eEEEEeCCCCHHHHHHHhCCCcEEEE--ECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc-HH
Confidence 35999999999999999988888764 5557777766655 77888887775 999999999999999988764 34
Q ss_pred HHHHHHHHHhhhCCCC-------Ccch-----------------hhhhHHHHHHhhCCceeeEEee
Q 017839 302 MEFLFYDVDRVLRGGG-------KASD-----------------LENVYGPLIGKLGYKKVKWATA 343 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG-------~~~~-----------------l~~~~~~~l~~~gfk~i~w~v~ 343 (365)
+..++.++.|+||||| .... ..+.+..++++.||+.+....-
T Consensus 119 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 184 (240)
T 3dli_A 119 LFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFF 184 (240)
T ss_dssp HHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEe
Confidence 5689999999999999 1110 1134678999999998766543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=130.79 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=100.4
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
+||||||+|.++..|+++|..++++ |++..+.+.+.++. .+.++.++++.+|+++++||+|++..+++|+.+ ++..
T Consensus 45 vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~ 121 (203)
T 3h2b_A 45 ILDVGSGTGRWTGHLASLGHQIEGL--EPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGP-GELP 121 (203)
T ss_dssp EEEETCTTCHHHHHHHHTTCCEEEE--CCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCT-TTHH
T ss_pred EEEecCCCCHHHHHHHhcCCeEEEE--eCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCH-HHHH
Confidence 4999999999999999998888864 55677877776653 477899999999999999999999999988753 3466
Q ss_pred HHHHHHHhhhCCCC-------Ccch--------------hhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeecC
Q 017839 304 FLFYDVDRVLRGGG-------KASD--------------LENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKP 362 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG-------~~~~--------------l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~KP 362 (365)
.++.++.|+||||| .... -.+.+..++++.||+.+....-.. ....|+...=.+|
T Consensus 122 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~----~p~~~l~~~~~~~ 197 (203)
T 3h2b_A 122 DALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR----FPHAYLTAEASLE 197 (203)
T ss_dssp HHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT----SSEEEEEEEECC-
T ss_pred HHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC----Ccchhhhhhhhhh
Confidence 89999999999999 1110 123578899999999887664433 4455555444444
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.5e-15 Score=133.68 Aligned_cols=89 Identities=22% Similarity=0.329 Sum_probs=73.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.|||||||+|.++..+++.+..+++++ ++..+.+.+.++ | .+.+..++++.+||++++||+|++..+++||.
T Consensus 24 ~vLDiGcG~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 101 (239)
T 1xxl_A 24 RVLDIGAGAGHTALAFSPYVQECIGVD--ATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFS 101 (239)
T ss_dssp EEEEESCTTSHHHHHHGGGSSEEEEEE--SCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCS
T ss_pred EEEEEccCcCHHHHHHHHhCCEEEEEE--CCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhhcc
Confidence 359999999999999999887877654 456666555432 3 36788899999999999999999999998886
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
+ .+.++.++.|+|||||
T Consensus 102 ~---~~~~l~~~~~~LkpgG 118 (239)
T 1xxl_A 102 D---VRKAVREVARVLKQDG 118 (239)
T ss_dssp C---HHHHHHHHHHHEEEEE
T ss_pred C---HHHHHHHHHHHcCCCc
Confidence 5 3579999999999999
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-15 Score=132.96 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=91.3
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHcC----CCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALRG----LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~Rg----~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.|||||||+|.++..++++ +..|++++ ++..+.+.+.++. .+.++.+++..+||++++||+|++..+++|+.
T Consensus 58 ~vLdiG~G~G~~~~~l~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 134 (266)
T 3ujc_A 58 KVLDIGSGLGGGCMYINEKYGAHTHGID--ICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALS- 134 (266)
T ss_dssp EEEEETCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSC-
T ss_pred EEEEECCCCCHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcC-
Confidence 4599999999999999987 78888754 4577777776653 46788899999999999999999999998874
Q ss_pred hhhHHHHHHHHHhhhCCCC--------Ccc--h-----------------hhhhHHHHHHhhCCceeeEE
Q 017839 299 VIMMEFLFYDVDRVLRGGG--------KAS--D-----------------LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG--------~~~--~-----------------l~~~~~~~l~~~gfk~i~w~ 341 (365)
..+...++.++.|+||||| ... . -.+.+..++++.||+.+...
T Consensus 135 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 135 LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 2356789999999999999 001 0 02246789999999887655
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-15 Score=131.78 Aligned_cols=87 Identities=15% Similarity=0.094 Sum_probs=73.2
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC--CCcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
|||||||+|.++..+++++..++++ |++..+.+.+.++. .+.++.++++.+ +++++||+|++..+++|+.+.
T Consensus 46 vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~~--- 119 (250)
T 2p7i_A 46 LLELGSFKGDFTSRLQEHFNDITCV--EASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDDP--- 119 (250)
T ss_dssp EEEESCTTSHHHHHHTTTCSCEEEE--ESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSSH---
T ss_pred EEEECCCCCHHHHHHHHhCCcEEEE--eCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcCH---
Confidence 5999999999999999988888765 45577777776653 467888888888 589999999999999988653
Q ss_pred HHHHHHHH-hhhCCCC
Q 017839 303 EFLFYDVD-RVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~-RVLRPGG 317 (365)
+.+|.|+. |+|||||
T Consensus 120 ~~~l~~~~~~~LkpgG 135 (250)
T 2p7i_A 120 VALLKRINDDWLAEGG 135 (250)
T ss_dssp HHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCCCC
Confidence 47999999 9999999
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-15 Score=129.19 Aligned_cols=89 Identities=19% Similarity=0.336 Sum_probs=73.2
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..++++ +..+++++ ++..+.+.+.++ + .+.++.++...+||++++||+|++..+++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALD--FSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEE--CCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 4599999999999999987 56777644 456666655443 3 367888999999999999999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+ ...++.++.|+|||||
T Consensus 124 ~~~---~~~~l~~~~~~L~pgG 142 (219)
T 3dlc_A 124 WED---VATAFREIYRILKSGG 142 (219)
T ss_dssp CSC---HHHHHHHHHHHEEEEE
T ss_pred ccC---HHHHHHHHHHhCCCCC
Confidence 754 4579999999999999
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=133.31 Aligned_cols=91 Identities=16% Similarity=0.085 Sum_probs=76.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEcc-hhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCGH-AVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~-~L~~w~d~~~ 301 (365)
.|||||||+|.++..+++++..++++ |++..+.+.+.++. .+.++.+++..+|+ +++||+|+|.. +++|+.+.+.
T Consensus 53 ~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~ 129 (263)
T 3pfg_A 53 SLLDVACGTGMHLRHLADSFGTVEGL--ELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAE 129 (263)
T ss_dssp EEEEETCTTSHHHHHHTTTSSEEEEE--ESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHH
T ss_pred cEEEeCCcCCHHHHHHHHcCCeEEEE--ECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHH
Confidence 45999999999999999998888775 45577777776653 46889999999998 89999999998 9987755456
Q ss_pred HHHHHHHHHhhhCCCC
Q 017839 302 MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG 317 (365)
...+|.++.|+|||||
T Consensus 130 ~~~~l~~~~~~L~pgG 145 (263)
T 3pfg_A 130 LDAALERFAAHVLPDG 145 (263)
T ss_dssp HHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHhcCCCc
Confidence 6789999999999999
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=129.45 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=88.4
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..+++.+ ..+++++ ++..+.+.+.++ + .+.+..+++..+|+++++||+|++..+++
T Consensus 40 ~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 117 (219)
T 3dh0_A 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAID--VQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFH 117 (219)
T ss_dssp EEEESSCTTCTTHHHHHHHHTTTCEEEEEE--SCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGG
T ss_pred EEEEEecCCCHHHHHHHHHhCCCcEEEEEE--CCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhh
Confidence 45999999999999999875 6777654 446666555433 3 36788899999999999999999999998
Q ss_pred cccChhhHHHHHHHHHhhhCCCC-------Cc------ch-----hhhhHHHHHHhhCCceeeEEe
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG-------KA------SD-----LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG-------~~------~~-----l~~~~~~~l~~~gfk~i~w~v 342 (365)
|+.+ ...++.++.|+||||| .. .. -.+.+..++++.||+.++...
T Consensus 118 ~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 180 (219)
T 3dh0_A 118 ELSE---PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVE 180 (219)
T ss_dssp GCSS---HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred hcCC---HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEe
Confidence 8754 3579999999999999 00 00 123578899999999887643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=134.51 Aligned_cols=88 Identities=19% Similarity=0.295 Sum_probs=73.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
.|||||||+|.++..+++.+..|+++ |++..+.+.+.++..+.++.++++.+||++++||+|++..+++|+.+ .+
T Consensus 37 ~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~ 111 (261)
T 3ege_A 37 VIADIGAGTGGYSVALANQGLFVYAV--EPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSH---LE 111 (261)
T ss_dssp EEEEETCTTSHHHHHHHTTTCEEEEE--CSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSS---HH
T ss_pred EEEEEcCcccHHHHHHHhCCCEEEEE--eCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccC---HH
Confidence 45999999999999999988888875 44566655444444567888999999999999999999999988854 45
Q ss_pred HHHHHHHhhhCCCC
Q 017839 304 FLFYDVDRVLRGGG 317 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG 317 (365)
.++++++|+|| ||
T Consensus 112 ~~l~~~~~~Lk-gG 124 (261)
T 3ege_A 112 KSFQEMQRIIR-DG 124 (261)
T ss_dssp HHHHHHHHHBC-SS
T ss_pred HHHHHHHHHhC-Cc
Confidence 79999999999 99
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=131.03 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=90.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC---CCcEEeccCCCCCCCCCccceeEEcchhhcccChh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
.|||||||+|.++..++++|..+++++ ++..+.+.+.++. .+.++.+++..+|+++++||+|++..+++|+.+
T Consensus 56 ~vLDiG~G~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-- 131 (242)
T 3l8d_A 56 EVLDVGCGDGYGTYKLSRTGYKAVGVD--ISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE-- 131 (242)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSC--
T ss_pred eEEEEcCCCCHHHHHHHHcCCeEEEEE--CCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccC--
Confidence 359999999999999999998888754 4567777776652 367888999999999999999999999988754
Q ss_pred hHHHHHHHHHhhhCCCC-------Cc---c-----------------hhhhhHHHHHHhhCCceeeEE
Q 017839 301 MMEFLFYDVDRVLRGGG-------KA---S-----------------DLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG-------~~---~-----------------~l~~~~~~~l~~~gfk~i~w~ 341 (365)
.+.++.++.|+||||| .. . ...+.+..++++.||+.+...
T Consensus 132 -~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 132 -PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred -HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 3479999999999999 00 0 001246789999999987654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=135.18 Aligned_cols=117 Identities=8% Similarity=-0.060 Sum_probs=89.7
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc------------------CCCcEEeccCCCCCCCC-Cccc
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR------------------GLVPLHVPLQQRLPLFD-GVLD 285 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R------------------g~v~~~~g~ae~LPF~D-~SFD 285 (365)
|||+|||+|.++..|+++|..|+++ |+++.|.+.+.++ ..+.++++++..+|+.+ ++||
T Consensus 26 vLD~GCG~G~~~~~la~~g~~V~gv--D~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fD 103 (203)
T 1pjz_A 26 VLVPLCGKSQDMSWLSGQGYHVVGA--ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCA 103 (203)
T ss_dssp EEETTTCCSHHHHHHHHHCCEEEEE--EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEE
T ss_pred EEEeCCCCcHhHHHHHHCCCeEEEE--eCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCEE
Confidence 5999999999999999999888875 4557787776654 23678999999999987 8999
Q ss_pred eeEEcchhhcccChhhHHHHHHHHHhhhCCCC-------Ccch----------hhhhHHHHHHhhCCceeeEEeecC
Q 017839 286 VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-------KASD----------LENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~----------l~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
+|++..+++++. .+..+.++.|++|+||||| .... -.+.+..+++. ||+.+.......
T Consensus 104 ~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~~~ 178 (203)
T 1pjz_A 104 AFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQDT 178 (203)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEESSC
T ss_pred EEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEeccccc
Confidence 999999987654 3445679999999999999 1100 12346677777 898776654443
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=132.38 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=75.4
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHcC---CCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.|||||||+|.++..+++.+. .++++ |++..+.+.+.++. .+.+..++++.+|+++++||+|++..+++|+.+
T Consensus 47 ~vLD~GcG~G~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~- 123 (253)
T 3g5l_A 47 TVLDLGCGFGWHCIYAAEHGAKKVLGI--DLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS- 123 (253)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC-
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh-
Confidence 459999999999999999886 77765 45577777776653 467888999999999999999999999988754
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
...++.++.|+|||||
T Consensus 124 --~~~~l~~~~~~LkpgG 139 (253)
T 3g5l_A 124 --FDDICKKVYINLKSSG 139 (253)
T ss_dssp --HHHHHHHHHHHEEEEE
T ss_pred --HHHHHHHHHHHcCCCc
Confidence 4579999999999999
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=135.27 Aligned_cols=113 Identities=18% Similarity=0.206 Sum_probs=88.1
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..++++ +..+++++ ++..+.+.+.++ | .+.++.+++..+||++++||+|++..+++|
T Consensus 85 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 162 (297)
T 2o57_A 85 KGLDLGAGYGGAARFLVRKFGVSIDCLN--IAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLH 162 (297)
T ss_dssp EEEEETCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGG
T ss_pred EEEEeCCCCCHHHHHHHHHhCCEEEEEe--CCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhh
Confidence 4599999999999999987 78888754 456666555432 3 367888999999999999999999999998
Q ss_pred ccChhhHHHHHHHHHhhhCCCC---------C-c---chh--------------hhhHHHHHHhhCCceeeEE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG---------K-A---SDL--------------ENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG---------~-~---~~l--------------~~~~~~~l~~~gfk~i~w~ 341 (365)
+.+ ...+|.|+.|+||||| . . ... .+.+..++++.||+.++..
T Consensus 163 ~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 163 SPD---KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp CSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cCC---HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 875 4579999999999999 0 0 000 1235678999999887654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=131.85 Aligned_cols=112 Identities=17% Similarity=0.103 Sum_probs=85.9
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++. +..|+++ |++..+.+.+.+ .| .+.+..++++.+|| +++||+|+|..+++|
T Consensus 39 ~VLDiGcG~G~~~~~la~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~ 115 (256)
T 1nkv_A 39 RILDLGSGSGEMLCTWARDHGITGTGI--DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGATWI 115 (256)
T ss_dssp EEEEETCTTCHHHHHHHHHTCCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHhcCCeEEEE--eCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCChHh
Confidence 3599999999999999886 6777764 455667665543 33 36788899999998 999999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC----------Ccc---hh--------------hhhHHHHHHhhCCceeeEE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG----------KAS---DL--------------ENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG----------~~~---~l--------------~~~~~~~l~~~gfk~i~w~ 341 (365)
+.+. ..+|.|+.|+||||| ... +. .+.+..++++.||+.+...
T Consensus 116 ~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 185 (256)
T 1nkv_A 116 AGGF---AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV 185 (256)
T ss_dssp TSSS---HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred cCCH---HHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEEE
Confidence 7643 479999999999999 000 00 1346789999999887643
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=131.42 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=92.0
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHcC----CCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALRG----LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~Rg----~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.|||||||+|.++..+++++ ..++++ |++..+.+.+.++. .+.++.++.+.+||++++||+|++..+++|+.+
T Consensus 96 ~vLDiG~G~G~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 173 (254)
T 1xtp_A 96 RALDCGAGIGRITKNLLTKLYATTDLL--EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTD 173 (254)
T ss_dssp EEEEETCTTTHHHHHTHHHHCSEEEEE--ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCH
T ss_pred EEEEECCCcCHHHHHHHHhhcCEEEEE--eCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCH
Confidence 45999999999999998875 446654 45577777766552 367888899999999999999999999988754
Q ss_pred hhhHHHHHHHHHhhhCCCC----Cc-----c-------h-----hhhhHHHHHHhhCCceeeEEeecC
Q 017839 299 VIMMEFLFYDVDRVLRGGG----KA-----S-------D-----LENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG----~~-----~-------~-----l~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
++...++.++.|+||||| .. . . -.+.+..++++.||+.++......
T Consensus 174 -~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 240 (254)
T 1xtp_A 174 -ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEE 240 (254)
T ss_dssp -HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTT
T ss_pred -HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecCC
Confidence 346789999999999999 00 0 0 123578899999999987765443
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=129.58 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=76.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CC-------CcEEeccCCCCCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GL-------VPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~-------v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
.+||||||+|.++..+++++..++++++ +..+.+.+.++ +. +.+..+++..+|+++++||+|++..+
T Consensus 33 ~vLdiG~G~G~~~~~l~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 110 (235)
T 3sm3_A 33 EILDIGCGSGKISLELASKGYSVTGIDI--NSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAF 110 (235)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEES--CHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred eEEEECCCCCHHHHHHHhCCCeEEEEEC--CHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcch
Confidence 3599999999999999999988887554 46676666553 22 46788899999999999999999999
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++|+.+......++.++.|+|||||
T Consensus 111 l~~~~~~~~~~~~l~~~~~~L~pgG 135 (235)
T 3sm3_A 111 LTSVPDPKERSRIIKEVFRVLKPGA 135 (235)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEEE
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCCe
Confidence 9988765555589999999999999
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-14 Score=124.62 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=74.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC--CCcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
.+||||||+|.++..+++++..++++ |++..+.+.+.++. .+.++.+++..+|++ ++||+|++..+++|+.+. .
T Consensus 48 ~vLDiGcG~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~-~ 123 (220)
T 3hnr_A 48 NVLEFGVGTGNLTNKLLLAGRTVYGI--EPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDD-E 123 (220)
T ss_dssp EEEEECCTTSHHHHHHHHTTCEEEEE--CSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHH-H
T ss_pred eEEEeCCCCCHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCChH-H
Confidence 35999999999999999998888875 55577777776652 478899999999998 999999999999877643 2
Q ss_pred HHHHHHHHHhhhCCCC
Q 017839 302 MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG 317 (365)
...+|.++.|+|||||
T Consensus 124 ~~~~l~~~~~~LkpgG 139 (220)
T 3hnr_A 124 KNVAIAKYSQLLNKGG 139 (220)
T ss_dssp HHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 3348999999999999
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=135.22 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=71.2
Q ss_pred EEEEcCcccHHHHHHhhc----CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 225 GIDVGGATGSFAARMKLY----NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~----gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
|||||||||.++..|+++ |++|++ +|+++.|.+.++++ + .+.++.+++..+||+ .||+|++..++
T Consensus 74 vLDlGcGtG~~~~~la~~~~~~~~~v~g--vD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~l 149 (261)
T 4gek_A 74 VYDLGCSLGAATLSVRRNIHHDNCKIIA--IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL 149 (261)
T ss_dssp EEEETCTTTHHHHHHHHTCCSSSCEEEE--EESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEESCG
T ss_pred EEEEeCCCCHHHHHHHHhcCCCCCEEEE--EECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeeeee
Confidence 499999999999999875 567886 45567888776553 2 367888999999985 49999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++. +.+.+.+|+|++|+|||||
T Consensus 150 ~~~~-~~~~~~~l~~i~~~LkpGG 172 (261)
T 4gek_A 150 QFLE-PSERQALLDKIYQGLNPGG 172 (261)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEE
T ss_pred eecC-chhHhHHHHHHHHHcCCCc
Confidence 7654 4445679999999999999
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=127.15 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=75.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcc-hhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGH-AVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~-~L~~w~ 297 (365)
.+||||||+|.++..+++++..++++ |++..+.+.+.++ + .+.++.++...+|++ ++||+|++.. +++|+.
T Consensus 40 ~vLdiG~G~G~~~~~l~~~~~~~~~~--D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~ 116 (246)
T 1y8c_A 40 DYLDLACGTGNLTENLCPKFKNTWAV--DLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYII 116 (246)
T ss_dssp EEEEETCTTSTTHHHHGGGSSEEEEE--CSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCC
T ss_pred eEEEeCCCCCHHHHHHHHCCCcEEEE--ECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccccccC
Confidence 45999999999999999998888765 4556676655443 3 467888999999987 8999999998 998886
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
+......+|.++.|+|||||
T Consensus 117 ~~~~~~~~l~~~~~~L~pgG 136 (246)
T 1y8c_A 117 DSDDLKKYFKAVSNHLKEGG 136 (246)
T ss_dssp SHHHHHHHHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCc
Confidence 55567789999999999999
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-14 Score=125.11 Aligned_cols=91 Identities=12% Similarity=-0.053 Sum_probs=74.5
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----C-------CCcEEeccCCCCCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----G-------LVPLHVPLQQRLPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----g-------~v~~~~g~ae~LPF~D~SFDlV~s~ 290 (365)
.+||||||+|.++..+++++ ..+++++ ++..+.+.+.++ + .+.++.+++..+++.+++||+|+|.
T Consensus 32 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 109 (219)
T 3jwg_A 32 KVIDLGCGEGNLLSLLLKDKSFEQITGVD--VSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109 (219)
T ss_dssp EEEEETCTTCHHHHHHHTSTTCCEEEEEE--SCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEE
T ss_pred EEEEecCCCCHHHHHHHhcCCCCEEEEEE--CCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEH
Confidence 45999999999999999876 5777654 456676666543 1 4678889999999999999999999
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+++|+.+ +.+..++.++.|+|||||
T Consensus 110 ~~l~~~~~-~~~~~~l~~~~~~LkpgG 135 (219)
T 3jwg_A 110 EVIEHLDE-NRLQAFEKVLFEFTRPQT 135 (219)
T ss_dssp SCGGGCCH-HHHHHHHHHHHTTTCCSE
T ss_pred HHHHhCCH-HHHHHHHHHHHHhhCCCE
Confidence 99988753 345689999999999999
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=130.99 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=88.0
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..++++ +..|++++ ++..+.+.+.++ | .+.+..+++..+||++++||+|++..+++|
T Consensus 64 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 141 (273)
T 3bus_A 64 RVLDVGCGIGKPAVRLATARDVRVTGIS--ISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHH 141 (273)
T ss_dssp EEEEESCTTSHHHHHHHHHSCCEEEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTT
T ss_pred EEEEeCCCCCHHHHHHHHhcCCEEEEEe--CCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhh
Confidence 4599999999999999875 77887754 446666555432 3 367888999999999999999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC---------Ccc--h-----h--------------hhhHHHHHHhhCCceeeEEe
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG---------KAS--D-----L--------------ENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG---------~~~--~-----l--------------~~~~~~~l~~~gfk~i~w~v 342 (365)
+.+. +.++.++.|+||||| ... . . .+.+..++++.||+.+.+..
T Consensus 142 ~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 215 (273)
T 3bus_A 142 MPDR---GRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVD 215 (273)
T ss_dssp SSCH---HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCH---HHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEE
Confidence 7543 479999999999999 000 0 0 12467889999999887664
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=133.78 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=74.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCC-CCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLP-LFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LP-F~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++.|..+++++ ++..+.+.+.++ | .+.++.++++.+| |.+++||+|++..+++|
T Consensus 71 ~vLDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 148 (285)
T 4htf_A 71 RVLDAGGGEGQTAIKMAERGHQVILCD--LSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEW 148 (285)
T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGG
T ss_pred EEEEeCCcchHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhc
Confidence 359999999999999999998888755 456676665543 3 3568889999998 89999999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+ .+.++.++.|+|||||
T Consensus 149 ~~~---~~~~l~~~~~~LkpgG 167 (285)
T 4htf_A 149 VAD---PRSVLQTLWSVLRPGG 167 (285)
T ss_dssp CSC---HHHHHHHHHHTEEEEE
T ss_pred ccC---HHHHHHHHHHHcCCCe
Confidence 764 3579999999999999
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-14 Score=124.54 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=92.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC--CCcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
.+||||||+|.++..+++++..+++++ ++..+.+.+.+.+ .+.++.+++..+ +++++||+|++..+++|+.+ +.
T Consensus 49 ~vLdiG~G~G~~~~~l~~~~~~v~~~D--~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~-~~ 124 (218)
T 3ou2_A 49 DVLELASGTGYWTRHLSGLADRVTALD--GSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPD-DR 124 (218)
T ss_dssp EEEEESCTTSHHHHHHHHHSSEEEEEE--SCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCH-HH
T ss_pred eEEEECCCCCHHHHHHHhcCCeEEEEe--CCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCH-HH
Confidence 459999999999999999988888754 4567777776655 366788898888 89999999999999988764 33
Q ss_pred HHHHHHHHHhhhCCCC-------Ccc--------------h------------------hhhhHHHHHHhhCCceeeEEe
Q 017839 302 MEFLFYDVDRVLRGGG-------KAS--------------D------------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG-------~~~--------------~------------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
...++.++.|+||||| ... . -.+.+..++++.||+...|.+
T Consensus 125 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 125 FEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEV 204 (218)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeeec
Confidence 5689999999999999 000 0 113477899999999777776
Q ss_pred ec
Q 017839 343 AN 344 (365)
Q Consensus 343 ~~ 344 (365)
..
T Consensus 205 ~~ 206 (218)
T 3ou2_A 205 HP 206 (218)
T ss_dssp ET
T ss_pred cc
Confidence 54
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-14 Score=127.47 Aligned_cols=119 Identities=14% Similarity=0.092 Sum_probs=91.2
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHcC------CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALRG------LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~Rg------~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.|||||||+|.++..+++++ ..++++ |++..+.+.+.++. .+.++.+++..+++++++||+|++..+++|+
T Consensus 82 ~vLDiGcG~G~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 159 (241)
T 2ex4_A 82 CALDCGAGIGRITKRLLLPLFREVDMV--DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL 159 (241)
T ss_dssp EEEEETCTTTHHHHHTTTTTCSEEEEE--ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred EEEEECCCCCHHHHHHHHhcCCEEEEE--eCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhC
Confidence 45999999999999998875 467764 45567777665542 2567888999999999999999999999887
Q ss_pred cChhhHHHHHHHHHhhhCCCC---C----cc------h-------hhhhHHHHHHhhCCceeeEEeecC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG---K----AS------D-------LENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG---~----~~------~-------l~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
.+ .....++.++.|+||||| . .. . -.+.+..++++.||+.+++....-
T Consensus 160 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 227 (241)
T 2ex4_A 160 TD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQEN 227 (241)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CH-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCC
Confidence 54 335679999999999999 1 00 0 123578899999999988765443
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-14 Score=124.37 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=76.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+||||||+|.++..+++++..++++ |++..+.+.+.++ +.+.++.+++..++ ++++||+|+|..+++|+.+.
T Consensus 54 ~vLDiGcG~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 130 (216)
T 3ofk_A 54 NGLEIGCAAGAFTEKLAPHCKRLTVI--DVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDM 130 (216)
T ss_dssp EEEEECCTTSHHHHHHGGGEEEEEEE--ESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSH
T ss_pred cEEEEcCCCCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCH
Confidence 45999999999999999988777764 4556777766654 34678889999998 79999999999999888766
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
+.+..++.++.|+|||||
T Consensus 131 ~~~~~~l~~~~~~L~pgG 148 (216)
T 3ofk_A 131 TQMRTAIDNMVKMLAPGG 148 (216)
T ss_dssp HHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 666688999999999999
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=118.88 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=98.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEc-chhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCG-HAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~-~~L~~w~d~~~ 301 (365)
.+||||||+|.++..+++.+..+++++ ++..+.+.+.++. .+.++.++...+|+++++||+|++. .+++++ +.+.
T Consensus 49 ~vLdiG~G~G~~~~~l~~~~~~v~~~D--~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~-~~~~ 125 (195)
T 3cgg_A 49 KILDAGCGQGRIGGYLSKQGHDVLGTD--LDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL-AEDG 125 (195)
T ss_dssp EEEEETCTTTHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS-CHHH
T ss_pred eEEEECCCCCHHHHHHHHCCCcEEEEc--CCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc-ChHH
Confidence 359999999999999999888888755 4466666665542 3678888999999999999999998 677655 3344
Q ss_pred HHHHHHHHHhhhCCCC-------Ccc-hhhhhHHHHHHhhCCceeeEEeecCCCC-CCCceEEEEeeecC
Q 017839 302 MEFLFYDVDRVLRGGG-------KAS-DLENVYGPLIGKLGYKKVKWATANKPNS-KNGEVYLTALLQKP 362 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG-------~~~-~l~~~~~~~l~~~gfk~i~w~v~~K~d~-~~~~~y~sall~KP 362 (365)
...++.++.|+||||| ... .-.+.+..++++.||+.++......... ..+..++-.+.+|+
T Consensus 126 ~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 126 REPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 6789999999999999 111 1123477899999999776543322211 22334455888875
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-14 Score=129.19 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=87.3
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++.+ ..|++++ ++..+.+.+.++ | .+.++.++.+.+||++++||+|+|..+++|
T Consensus 49 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 126 (267)
T 3kkz_A 49 LIADIGCGTGGQTMVLAGHVTGQVTGLD--FLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYN 126 (267)
T ss_dssp EEEEETCTTCHHHHHHHTTCSSEEEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGG
T ss_pred EEEEeCCCCCHHHHHHHhccCCEEEEEe--CCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCcee
Confidence 45999999999999999885 4787754 456666655433 3 367889999999999999999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC-------C---c---chh-------------hhhHHHHHHhhCCceeeEEe
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG-------K---A---SDL-------------ENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG-------~---~---~~l-------------~~~~~~~l~~~gfk~i~w~v 342 (365)
+ + ...++.++.|+||||| . . ... .+.+..++++.||+.+....
T Consensus 127 ~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 127 I-G---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp T-C---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred c-C---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 7 4 3479999999999999 0 0 001 12356889999999887654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.3e-14 Score=125.93 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=73.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||+|.++..+++. +..+++++ ++..+.+.+.++ +.+.++.+++..+|+. ++||+|++..+++|+.
T Consensus 47 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~ 123 (234)
T 3dtn_A 47 DILDLGAGTGLLSAFLMEKYPEATFTLVD--MSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLE 123 (234)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGGSC
T ss_pred eEEEecCCCCHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccccCC
Confidence 3599999999999999987 67887754 456777766654 2467888999999988 9999999999998875
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
+ .....+++++.|+|||||
T Consensus 124 ~-~~~~~~l~~~~~~LkpgG 142 (234)
T 3dtn_A 124 D-EDKKELYKRSYSILKESG 142 (234)
T ss_dssp H-HHHHHHHHHHHHHEEEEE
T ss_pred H-HHHHHHHHHHHHhcCCCc
Confidence 3 334469999999999999
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-14 Score=133.19 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=88.5
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..++++ +..|++++ ++..+.+.+.+ .| .+.++.++++.+||++++||+|++..+++|
T Consensus 120 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 197 (312)
T 3vc1_A 120 TLVDAGCGRGGSMVMAHRRFGSRVEGVT--LSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMY 197 (312)
T ss_dssp EEEEESCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGG
T ss_pred EEEEecCCCCHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhh
Confidence 4599999999999999988 88888755 44666665543 23 367899999999999999999999999987
Q ss_pred ccChhhHHHHHHHHHhhhCCCC---------Cc-c-h-----------------hhhhHHHHHHhhCCceeeEEe
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG---------KA-S-D-----------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG---------~~-~-~-----------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
+ + ...++.++.|+||||| .. . . -.+.+..++++.||+.+....
T Consensus 198 ~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 198 V-D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp S-C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred C-C---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 7 4 4579999999999999 00 0 0 012467899999998876553
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-14 Score=127.40 Aligned_cols=112 Identities=18% Similarity=0.152 Sum_probs=86.0
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHc----CC---CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALR----GL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~R----g~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++++ ..|++++ ++..+.+.+.++ |. +.++.++++.+||++++||+|++..+++|
T Consensus 49 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 126 (257)
T 3f4k_A 49 KIADIGCGTGGQTLFLADYVKGQITGID--LFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYN 126 (257)
T ss_dssp EEEEETCTTSHHHHHHHHHCCSEEEEEE--SCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCC
T ss_pred eEEEeCCCCCHHHHHHHHhCCCeEEEEE--CCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhh
Confidence 45999999999999999885 4777654 456666554432 32 67888999999999999999999999987
Q ss_pred ccChhhHHHHHHHHHhhhCCCC----C------c---chh-------------hhhHHHHHHhhCCceeeEE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG----K------A---SDL-------------ENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG----~------~---~~l-------------~~~~~~~l~~~gfk~i~w~ 341 (365)
+ + .+.++.++.|+||||| . . ... .+.+..++++.||+.+...
T Consensus 127 ~-~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 127 I-G---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp C-C---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred c-C---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 6 3 3479999999999999 0 0 000 1236788999999987644
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-14 Score=131.18 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=74.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C------CCcEEeccCCCCC---CCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G------LVPLHVPLQQRLP---LFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g------~v~~~~g~ae~LP---F~D~SFDlV~s~ 290 (365)
.|||||||+|.++..|+++|..|++++ ++..+.+.+.++ + .+.+..++...+| |++++||+|+|.
T Consensus 60 ~vLDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 137 (293)
T 3thr_A 60 RVLDVACGTGVDSIMLVEEGFSVTSVD--ASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL 137 (293)
T ss_dssp EEEETTCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEEC
T ss_pred EEEEecCCCCHHHHHHHHCCCeEEEEE--CCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEc
Confidence 359999999999999999998888754 456777666442 1 2456778888888 999999999998
Q ss_pred -chhhcccC----hhhHHHHHHHHHhhhCCCC
Q 017839 291 -HAVNRWIP----VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 -~~L~~w~d----~~~le~aL~Ei~RVLRPGG 317 (365)
.+++|+.+ .+....++.+++|+|||||
T Consensus 138 g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG 169 (293)
T 3thr_A 138 GNSFAHLPDSKGDQSEHRLALKNIASMVRPGG 169 (293)
T ss_dssp TTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEE
T ss_pred ChHHhhcCccccCHHHHHHHHHHHHHHcCCCe
Confidence 89988876 3446789999999999999
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-14 Score=124.91 Aligned_cols=138 Identities=12% Similarity=0.025 Sum_probs=97.5
Q ss_pred eEEEEcCcccHH-HHHHhhcCCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSF-AARMKLYNITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~f-aa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||+|||+|.+ ...+++.+..+++++ .+..+.+.+.++ + .+.+..+++..+|+++++||+|++..+++|+.
T Consensus 26 ~vLDiGcG~G~~~~~~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 103 (209)
T 2p8j_A 26 TVLDCGAGGDLPPLSIFVEDGYKTYGIE--ISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMR 103 (209)
T ss_dssp EEEEESCCSSSCTHHHHHHTTCEEEEEE--CCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSC
T ss_pred EEEEECCCCCHHHHHHHHhCCCEEEEEE--CCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCC
Confidence 459999999997 556666788888754 456666555432 2 46788999999999999999999999998874
Q ss_pred ChhhHHHHHHHHHhhhCCCC-------Ccch----------------------------hhhhHHHHHHhhCCceeeEEe
Q 017839 298 PVIMMEFLFYDVDRVLRGGG-------KASD----------------------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG-------~~~~----------------------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
..+...++.++.|+||||| ...+ -.+.+..+++.+||....-..
T Consensus 104 -~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~~ 182 (209)
T 2p8j_A 104 -KNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRV 182 (209)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEEEE
T ss_pred -HHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeeeee
Confidence 3456789999999999999 0000 011356678888886654443
Q ss_pred ecCCCCC--CCceEEEEeeecCCC
Q 017839 343 ANKPNSK--NGEVYLTALLQKPVS 364 (365)
Q Consensus 343 ~~K~d~~--~~~~y~sall~KP~~ 364 (365)
..+.+.+ -...|..++.+|-.+
T Consensus 183 ~~~~~~g~~~~~~f~~~~~~~~~~ 206 (209)
T 2p8j_A 183 VERINDGLKIKQGYVDYIAEKFSK 206 (209)
T ss_dssp EEEEETTEEEEEEEEEEEEECCCC
T ss_pred eehhhcCCcccceeeeeehhhhhh
Confidence 3332222 256788888888543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=124.16 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=88.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCC---CCCCCc-cceeEEcchhhcccCh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL---PLFDGV-LDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L---PF~D~S-FDlV~s~~~L~~w~d~ 299 (365)
.+||||||+|.++..++++|..++++ |++..+.+.+.+++.+.+..++...+ |+.++. ||+|++..+++ +.+
T Consensus 55 ~vLdiG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~- 130 (227)
T 3e8s_A 55 RVLDLGCGEGWLLRALADRGIEAVGV--DGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD- 130 (227)
T ss_dssp EEEEETCTTCHHHHHHHTTTCEEEEE--ESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC-
T ss_pred EEEEeCCCCCHHHHHHHHCCCEEEEE--cCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hhh-
Confidence 45999999999999999999888875 45577888888887778888876666 766555 99999999997 443
Q ss_pred hhHHHHHHHHHhhhCCCC------C-----cch--------------------------hhhhHHHHHHhhCCceeeEEe
Q 017839 300 IMMEFLFYDVDRVLRGGG------K-----ASD--------------------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG------~-----~~~--------------------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
...++.++.|+||||| . ... -.+.+.+++++.||+.+....
T Consensus 131 --~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 131 --IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp --CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred --HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 3479999999999999 0 000 124578899999999887665
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.1e-14 Score=128.13 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=72.9
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..++++ +..++++++ +..+.+.+.++ + .+.+..+++..+|+++++||+|++..+++|
T Consensus 40 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 117 (276)
T 3mgg_A 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDI--SPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEH 117 (276)
T ss_dssp EEEETTCTTSHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGG
T ss_pred eEEEecCCCCHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhhh
Confidence 4599999999999999987 577877544 46666555433 3 367888899999999999999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+. +.++.++.|+|||||
T Consensus 118 ~~~~---~~~l~~~~~~L~pgG 136 (276)
T 3mgg_A 118 LQSP---EEALKSLKKVLKPGG 136 (276)
T ss_dssp CSCH---HHHHHHHHHHEEEEE
T ss_pred cCCH---HHHHHHHHHHcCCCc
Confidence 7653 479999999999999
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=124.34 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=74.7
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHcC---CCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.|||||||+|.++..+++++. .+++++ ++..+.+.+.++. .+.+..++...+|+++++||+|++..+++|+.+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~- 122 (243)
T 3bkw_A 46 RIVDLGCGFGWFCRWAHEHGASYVLGLD--LSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVED- 122 (243)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC-
T ss_pred EEEEEcCcCCHHHHHHHHCCCCeEEEEc--CCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccch-
Confidence 459999999999999999887 787654 4567777776653 357788899999999999999999999988754
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
...++.++.|+|||||
T Consensus 123 --~~~~l~~~~~~L~pgG 138 (243)
T 3bkw_A 123 --VARLFRTVHQALSPGG 138 (243)
T ss_dssp --HHHHHHHHHHHEEEEE
T ss_pred --HHHHHHHHHHhcCcCc
Confidence 4579999999999999
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=129.83 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=73.8
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc---------CCCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR---------GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R---------g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
|||||||+|.++..|+++|..|++++ ++..+.+.+.++ ..+.++.+++..+|+ +++||+|+|...+.|
T Consensus 86 vLDlGcG~G~~~~~l~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~ 162 (299)
T 3g2m_A 86 VLELAAGMGRLTFPFLDLGWEVTALE--LSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSIN 162 (299)
T ss_dssp EEEETCTTTTTHHHHHTTTCCEEEEE--SCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHT
T ss_pred EEEEeccCCHHHHHHHHcCCeEEEEE--CCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccc
Confidence 59999999999999999998888754 456777666543 346789999999998 899999998765556
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+++....+|.++.|+|||||
T Consensus 163 ~~~~~~~~~~l~~~~~~L~pgG 184 (299)
T 3g2m_A 163 ELDEADRRGLYASVREHLEPGG 184 (299)
T ss_dssp TSCHHHHHHHHHHHHHHEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCc
Confidence 6665566789999999999999
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=128.10 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=73.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
.|||||||+|.++..+++.+..|++++ ++..+.+.+.++ ..+.+..++++.+|+ +++||+|++..+++++.+ .
T Consensus 60 ~vLDiGcG~G~~~~~l~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~d---~ 133 (279)
T 3ccf_A 60 FILDLGCGTGQLTEKIAQSGAEVLGTD--NAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKE---P 133 (279)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGGCSC---H
T ss_pred EEEEecCCCCHHHHHHHhCCCeEEEEE--CCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhhCcC---H
Confidence 459999999999999999888888754 557777777665 346789999999998 689999999999976654 3
Q ss_pred HHHHHHHHhhhCCCC
Q 017839 303 EFLFYDVDRVLRGGG 317 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG 317 (365)
+.++.|+.|+|||||
T Consensus 134 ~~~l~~~~~~LkpgG 148 (279)
T 3ccf_A 134 EAAIASIHQALKSGG 148 (279)
T ss_dssp HHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHhcCCCc
Confidence 579999999999999
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-14 Score=124.43 Aligned_cols=91 Identities=11% Similarity=-0.100 Sum_probs=74.1
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----C-------CCcEEeccCCCCCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----G-------LVPLHVPLQQRLPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----g-------~v~~~~g~ae~LPF~D~SFDlV~s~ 290 (365)
.+||||||+|.++..+++++ ..+++++ ++..+.+.+.++ + .+.++.+++..+++.+++||+|+|.
T Consensus 32 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 109 (217)
T 3jwh_A 32 RVIDLGCGQGNLLKILLKDSFFEQITGVD--VSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI 109 (217)
T ss_dssp EEEEETCTTCHHHHHHHHCTTCSEEEEEE--SCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEE
T ss_pred EEEEeCCCCCHHHHHHHhhCCCCEEEEEE--CCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeH
Confidence 45999999999999999875 5777654 456776666543 1 4678888988889889999999999
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+++|+. +.....++.++.|+|||||
T Consensus 110 ~~l~~~~-~~~~~~~l~~~~~~LkpgG 135 (217)
T 3jwh_A 110 EVIEHLD-LSRLGAFERVLFEFAQPKI 135 (217)
T ss_dssp SCGGGCC-HHHHHHHHHHHHTTTCCSE
T ss_pred HHHHcCC-HHHHHHHHHHHHHHcCCCE
Confidence 9998874 3445689999999999999
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=119.87 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=93.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cC--CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||+|.++..+++++..++++++ +..+.+.+.+ .+ .+.+..++...+|+ +++||+|++..+++|+.
T Consensus 35 ~vLdiG~G~G~~~~~l~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~ 111 (199)
T 2xvm_A 35 KTLDLGCGNGRNSLYLAANGYDVDAWDK--NAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLE 111 (199)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGSC
T ss_pred eEEEEcCCCCHHHHHHHHCCCeEEEEEC--CHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhCC
Confidence 4599999999999999999888887554 4556555433 23 36788889999998 99999999999997765
Q ss_pred ChhhHHHHHHHHHhhhCCCC--------Ccch-----------hhhhHHHHHHhhCCceeeEEee----cCCCCCCC---
Q 017839 298 PVIMMEFLFYDVDRVLRGGG--------KASD-----------LENVYGPLIGKLGYKKVKWATA----NKPNSKNG--- 351 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG--------~~~~-----------l~~~~~~~l~~~gfk~i~w~v~----~K~d~~~~--- 351 (365)
.+....++.++.|+||||| ...+ -.+.+..+++. |+.+.+... ...+....
T Consensus 112 -~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~~~~~~~~~~~g~~~~ 188 (199)
T 2xvm_A 112 -AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNEDVGELHRTDANGNRIK 188 (199)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECCEEEEEEECTTSCEEE
T ss_pred -HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecccceEEEeecCCCCeee
Confidence 3456789999999999999 1000 12346667776 777665422 11111111
Q ss_pred ceEEEEeeecC
Q 017839 352 EVYLTALLQKP 362 (365)
Q Consensus 352 ~~y~sall~KP 362 (365)
.-|...+.+||
T Consensus 189 ~~~~~~~arK~ 199 (199)
T 2xvm_A 189 LRFATMLARKK 199 (199)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEEecC
Confidence 13567888887
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.3e-14 Score=126.48 Aligned_cols=89 Identities=19% Similarity=0.154 Sum_probs=74.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-----CCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.|||||||+|.++..+++++..+++++ ++..+.+.+.++ ..+.+..++++.+||++++||+|++..+++++.+
T Consensus 42 ~vLDiG~G~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 119 (263)
T 2yqz_A 42 VFLELGVGTGRIALPLIARGYRYIALD--ADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPD 119 (263)
T ss_dssp EEEEETCTTSTTHHHHHTTTCEEEEEE--SCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTT
T ss_pred EEEEeCCcCCHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhcCC
Confidence 459999999999999999888888754 457777776654 2367888999999999999999999999976543
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
.+.++.++.|+|||||
T Consensus 120 ---~~~~l~~~~~~L~pgG 135 (263)
T 2yqz_A 120 ---WPKVLAEAIRVLKPGG 135 (263)
T ss_dssp ---HHHHHHHHHHHEEEEE
T ss_pred ---HHHHHHHHHHHCCCCc
Confidence 4579999999999999
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-13 Score=124.75 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=70.1
Q ss_pred eEEEEcCcccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKL-YNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++ .|..|++++ ++..+.+.+.++ | .+.+..++.+.+| ++||+|++..+++|
T Consensus 67 ~vLDiGcG~G~~~~~l~~~~~~~v~gvd--~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~ 141 (287)
T 1kpg_A 67 TLLDVGCGWGATMMRAVEKYDVNVVGLT--LSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEH 141 (287)
T ss_dssp EEEEETCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGG
T ss_pred EEEEECCcccHHHHHHHHHcCCEEEEEE--CCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhh
Confidence 459999999999999984 578887754 456666665543 3 3677888888877 89999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+ .....++.++.|+|||||
T Consensus 142 ~~~-~~~~~~l~~~~~~LkpgG 162 (287)
T 1kpg_A 142 FGH-ERYDAFFSLAHRLLPADG 162 (287)
T ss_dssp TCT-TTHHHHHHHHHHHSCTTC
T ss_pred cCh-HHHHHHHHHHHHhcCCCC
Confidence 853 235679999999999999
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.9e-14 Score=130.61 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=78.4
Q ss_pred eEEEEcCcccHHHH----HHhhc--CCeEEEeccCCChhHHHHHHHc-----CC--CcE--EeccCCCCC------CCCC
Q 017839 224 LGIDVGGATGSFAA----RMKLY--NITILTTTMNLGAPYSEAAALR-----GL--VPL--HVPLQQRLP------LFDG 282 (365)
Q Consensus 224 i~LDIGCGtG~faa----~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-----g~--v~~--~~g~ae~LP------F~D~ 282 (365)
.|||||||||.++. .++++ ++.+..+++|.++.|.+.+.++ ++ +.+ ..++++.++ |+++
T Consensus 55 ~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (292)
T 2aot_A 55 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQ 134 (292)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCCC
T ss_pred eEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCCC
Confidence 35999999997654 33333 4543123466778888766543 22 222 344555554 7899
Q ss_pred ccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-------Cc-ch---------------------hhhhHHHHHHhh
Q 017839 283 VLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-------KA-SD---------------------LENVYGPLIGKL 333 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------~~-~~---------------------l~~~~~~~l~~~ 333 (365)
+||+|+++.+++|+.+ ++.+|.|++|+||||| .. .. -.+.+.+++++.
T Consensus 135 ~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 211 (292)
T 2aot_A 135 KWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 211 (292)
T ss_dssp CEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHH
T ss_pred ceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHC
Confidence 9999999999988765 3579999999999999 10 00 012467899999
Q ss_pred CCceeeEEe
Q 017839 334 GYKKVKWAT 342 (365)
Q Consensus 334 gfk~i~w~v 342 (365)
||+.+....
T Consensus 212 Gf~~~~~~~ 220 (292)
T 2aot_A 212 GLKYECYDL 220 (292)
T ss_dssp TCCEEEEEE
T ss_pred CCceEEEEe
Confidence 998776443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.1e-14 Score=131.65 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=98.3
Q ss_pred eEEEEcCcccHHHHHHh--hc-CCeEEEeccCCChhHHHHHHHc----CC---CcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMK--LY-NITILTTTMNLGAPYSEAAALR----GL---VPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~La--e~-gv~Vv~~~ldl~~~~~e~a~~R----g~---v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.|||||||+|.++..|+ .. +..+++++ ++..+.+.+.++ |. +.++.+++..+||+ ++||+|++..++
T Consensus 121 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~ 197 (305)
T 3ocj_A 121 VVASVPCGWMSELLALDYSACPGVQLVGID--YDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLN 197 (305)
T ss_dssp EEEETTCTTCHHHHTSCCTTCTTCEEEEEE--SCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSG
T ss_pred EEEEecCCCCHHHHHHHHhcCCCCeEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChh
Confidence 35999999999999995 22 56777654 456676666543 22 67899999999998 999999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-----C---------cc------------------------------hhhhhHHHH
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-----K---------AS------------------------------DLENVYGPL 329 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-----~---------~~------------------------------~l~~~~~~~ 329 (365)
+|+.+......++.++.|+||||| . .. .-.+.+..+
T Consensus 198 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (305)
T 3ocj_A 198 IYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQ 277 (305)
T ss_dssp GGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHH
Confidence 888776554568999999999999 1 01 012346789
Q ss_pred HHhhCCceeeEEeecCCCCCCCceEEEEeeecCC
Q 017839 330 IGKLGYKKVKWATANKPNSKNGEVYLTALLQKPV 363 (365)
Q Consensus 330 l~~~gfk~i~w~v~~K~d~~~~~~y~sall~KP~ 363 (365)
+++.||+.++.... ....|.+.+.+||.
T Consensus 278 l~~aGF~~v~~~~~------~~~~~~~v~a~Kpa 305 (305)
T 3ocj_A 278 LEEAGFTDLRFEDD------RARLFPTVIARKPA 305 (305)
T ss_dssp HHHTTCEEEEEECC------TTSSSCEEEEECCC
T ss_pred HHHCCCEEEEEEcc------cCceeeEEEEecCC
Confidence 99999999876541 23466778889983
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.3e-13 Score=119.28 Aligned_cols=90 Identities=20% Similarity=0.163 Sum_probs=72.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcc-hhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGH-AVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~-~L~~w~ 297 (365)
.+||||||+|.++..+++. ..+++++ ++..+.+.+.++ + .+.++.+++..+|++ ++||+|++.. +++|+.
T Consensus 36 ~vLdiG~G~G~~~~~l~~~-~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~ 111 (243)
T 3d2l_A 36 RIADIGCGTGTATLLLADH-YEVTGVD--LSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQ 111 (243)
T ss_dssp EEEEESCTTCHHHHHHTTT-SEEEEEE--SCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCC
T ss_pred eEEEecCCCCHHHHHHhhC-CeEEEEE--CCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcC
Confidence 4599999999999999988 6777654 456666655443 2 367888898889886 8999999986 888875
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
+......++.++.|+|||||
T Consensus 112 ~~~~~~~~l~~~~~~L~pgG 131 (243)
T 3d2l_A 112 TEADVKQTFDSAARLLTDGG 131 (243)
T ss_dssp SHHHHHHHHHHHHHHEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCe
Confidence 65667789999999999999
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=120.16 Aligned_cols=91 Identities=16% Similarity=0.035 Sum_probs=74.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEcc-hhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCGH-AVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~-~L~~w~d~~~ 301 (365)
.+||||||+|.++..+++++..++++ |++..+.+.+.++. .+.++.+++..+|+ +++||+|+|.. +++|..+.+.
T Consensus 43 ~vLdiG~G~G~~~~~l~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~ 119 (239)
T 3bxo_A 43 SLLDVACGTGTHLEHFTKEFGDTAGL--ELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEE 119 (239)
T ss_dssp EEEEETCTTSHHHHHHHHHHSEEEEE--ESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHH
T ss_pred eEEEecccCCHHHHHHHHhCCcEEEE--eCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHH
Confidence 35999999999999999887777764 45577777776652 36788899999998 88999999655 8877655556
Q ss_pred HHHHHHHHHhhhCCCC
Q 017839 302 MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG 317 (365)
...++.++.|+|||||
T Consensus 120 ~~~~l~~~~~~L~pgG 135 (239)
T 3bxo_A 120 LGAAVASFAEHLEPGG 135 (239)
T ss_dssp HHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHhcCCCe
Confidence 7789999999999999
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-13 Score=122.11 Aligned_cols=118 Identities=10% Similarity=-0.007 Sum_probs=90.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-------CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-------LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-------~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||||||+|.++..|++.+..|+++ |++..+.+.+.++. .+.++.+++..++ ++++||+|++..+++++
T Consensus 69 ~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 69 RALVPGCGGGHDVVAMASPERFVVGL--DISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEETCTTCHHHHHHCBTTEEEEEE--CSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTS
T ss_pred CEEEeCCCCCHHHHHHHhCCCeEEEE--ECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcC
Confidence 45999999999999999888888764 55566766665431 2678889998888 56699999999999776
Q ss_pred cChhhHHHHHHHHHhhhCCCC-------Ccch---------hhhhHHHHHHhhCCceeeEEeecC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG-------KASD---------LENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG-------~~~~---------l~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
. ++....++.++.|+||||| ...+ -.+.+..++++.||+.+.......
T Consensus 146 ~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 146 E-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENPH 209 (235)
T ss_dssp C-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECTT
T ss_pred C-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecCC
Confidence 5 3456789999999999999 0100 124578899999999887665443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8.1e-13 Score=116.09 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=70.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||||||+|.++..+++.|..+++++ ++..+.+.+.++ + .+.+..+++..+|+++++||+|++.. .|+ .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~-~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVD--QSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHL-P 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEEC--SSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCC-C
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEE--CCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcC-C
Confidence 359999999999999999888888754 456666655443 3 36778889999999999999999964 355 3
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
......++.++.|+|||||
T Consensus 107 ~~~~~~~l~~~~~~L~pgG 125 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGG 125 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSE
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 3456789999999999999
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=115.86 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=72.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-----CCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||||||+|.++..+++++..++++++ +..+.+.+.++ ..+.++.++...+|+++++||+|++..+++++.
T Consensus 41 ~vLDlG~G~G~~~~~l~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~- 117 (227)
T 1ve3_A 41 KVLDLACGVGGFSFLLEDYGFEVVGVDI--SEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE- 117 (227)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC-
T ss_pred eEEEEeccCCHHHHHHHHcCCEEEEEEC--CHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC-
Confidence 4599999999999999998877776544 46666655443 346788899999999999999999999864443
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
..+...++.++.|+|||||
T Consensus 118 ~~~~~~~l~~~~~~L~~gG 136 (227)
T 1ve3_A 118 PLELNQVFKEVRRVLKPSG 136 (227)
T ss_dssp HHHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCc
Confidence 2345689999999999999
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=116.50 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=82.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMM 302 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~l 302 (365)
.+||||||+|.++..+++++..+++ +|++..+.+.+.++ ..+.+..++ +|+++++||+|++..+++|+.+ .
T Consensus 20 ~vLDiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~---~ 91 (170)
T 3i9f_A 20 VIVDYGCGNGFYCKYLLEFATKLYC--IDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDD---K 91 (170)
T ss_dssp EEEEETCTTCTTHHHHHTTEEEEEE--ECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSC---H
T ss_pred eEEEECCCCCHHHHHHHhhcCeEEE--EeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccC---H
Confidence 4599999999999999988656665 45556777777665 346677776 8999999999999999988754 4
Q ss_pred HHHHHHHHhhhCCCC-------Ccc------h-----hhhhHHHHHHhhCCceeeEE
Q 017839 303 EFLFYDVDRVLRGGG-------KAS------D-----LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 303 e~aL~Ei~RVLRPGG-------~~~------~-----l~~~~~~~l~~~gfk~i~w~ 341 (365)
+.++.++.|+||||| ... . -.+.+..+++ ||+.++..
T Consensus 92 ~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 92 QHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc
Confidence 579999999999999 100 0 1234667777 99887654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.2e-13 Score=117.15 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=87.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCC--CCCCCCccceeEEcchhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQR--LPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~--LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
.+||||||+|.++..+++.+..+++++ ++..+.+.+.++ ...+..++++. +|+++++||+|++..+++|+.+.
T Consensus 35 ~vLdiG~G~G~~~~~l~~~~~~~~~~D--~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~-- 109 (230)
T 3cc8_A 35 EVLDIGCSSGALGAAIKENGTRVSGIE--AFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP-- 109 (230)
T ss_dssp EEEEETCTTSHHHHHHHTTTCEEEEEE--SSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred cEEEeCCCCCHHHHHHHhcCCeEEEEe--CCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH--
Confidence 459999999999999998887777654 456666665544 34678888765 78999999999999999887653
Q ss_pred HHHHHHHHHhhhCCCC-------Ccch----------------------------hhhhHHHHHHhhCCceeeEEee
Q 017839 302 MEFLFYDVDRVLRGGG-------KASD----------------------------LENVYGPLIGKLGYKKVKWATA 343 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG-------~~~~----------------------------l~~~~~~~l~~~gfk~i~w~v~ 343 (365)
+.++.++.|+||||| .... -.+.+..++++.||+.+.+...
T Consensus 110 -~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 110 -WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp -HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEec
Confidence 479999999999999 1000 1234678999999998876643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=132.74 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=88.0
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc---------C-----CCcEEeccCCCC------CCC
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR---------G-----LVPLHVPLQQRL------PLF 280 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R---------g-----~v~~~~g~ae~L------PF~ 280 (365)
.|||||||+|.++..|++. +..|++++ ++..+.+.+.++ | .+.++.++++.+ ||+
T Consensus 86 ~VLDlGcG~G~~~~~la~~~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~ 163 (383)
T 4fsd_A 86 TVLDLGCGTGRDVYLASKLVGEHGKVIGVD--MLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP 163 (383)
T ss_dssp EEEEESCTTSHHHHHHHHHHTTTCEEEEEE--CCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred EEEEecCccCHHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence 3599999999999999875 45777654 456777766554 3 467888998887 999
Q ss_pred CCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC--------Ccc--------------------hhhhhHHHHHHh
Q 017839 281 DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG--------KAS--------------------DLENVYGPLIGK 332 (365)
Q Consensus 281 D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG--------~~~--------------------~l~~~~~~~l~~ 332 (365)
+++||+|++..+++++.+ .+.+|.|+.|+||||| ... --.+.+..++++
T Consensus 164 ~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 164 DSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp TTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 999999999999987654 4579999999999999 000 001357789999
Q ss_pred hCCceeeEEe
Q 017839 333 LGYKKVKWAT 342 (365)
Q Consensus 333 ~gfk~i~w~v 342 (365)
.||+.+++..
T Consensus 241 aGF~~v~~~~ 250 (383)
T 4fsd_A 241 AGFRDVRLVS 250 (383)
T ss_dssp TTCCCEEEEE
T ss_pred CCCceEEEEe
Confidence 9998775543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-13 Score=124.44 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=71.1
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++. +..+++++ ++..+.+.+.++ + .+.+..+++..+|+ +++||+|++..+++|
T Consensus 25 ~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~~ 101 (284)
T 3gu3_A 25 HIVDYGCGYGYLGLVLMPLLPEGSKYTGID--SGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHAFLLH 101 (284)
T ss_dssp EEEEETCTTTHHHHHHTTTSCTTCEEEEEE--SCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEESCGGG
T ss_pred eEEEecCCCCHHHHHHHHhCCCCCEEEEEE--CCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEECChhhc
Confidence 3599999999999999987 57887755 456666655443 2 36788899999998 579999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+. +.++.++.|+|||||
T Consensus 102 ~~~~---~~~l~~~~~~LkpgG 120 (284)
T 3gu3_A 102 MTTP---ETMLQKMIHSVKKGG 120 (284)
T ss_dssp CSSH---HHHHHHHHHTEEEEE
T ss_pred CCCH---HHHHHHHHHHcCCCC
Confidence 7643 479999999999999
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-14 Score=129.93 Aligned_cols=115 Identities=10% Similarity=-0.124 Sum_probs=87.9
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-----------------------CCCcEEeccCCCCCCCC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-----------------------GLVPLHVPLQQRLPLFD 281 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-----------------------g~v~~~~g~ae~LPF~D 281 (365)
|||+|||+|.++..|+++|..|++ +|+++.+.+.+.++ ..+.++++++..+|+.+
T Consensus 72 vLD~GCG~G~~~~~La~~G~~V~g--vD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~ 149 (252)
T 2gb4_A 72 VFFPLCGKAIEMKWFADRGHTVVG--VEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRAN 149 (252)
T ss_dssp EEETTCTTCTHHHHHHHTTCEEEE--ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGC
T ss_pred EEEeCCCCcHHHHHHHHCCCeEEE--EECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCccc
Confidence 499999999999999999998887 55667787766543 13578899999999875
Q ss_pred -CccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC--------Cc------c---hhhhhHHHHHHhhCCceeeEEee
Q 017839 282 -GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG--------KA------S---DLENVYGPLIGKLGYKKVKWATA 343 (365)
Q Consensus 282 -~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG--------~~------~---~l~~~~~~~l~~~gfk~i~w~v~ 343 (365)
++||+|++..++++.. .+..+.++.++.|+||||| .. + --.+.+..+++. +|+.+.+...
T Consensus 150 ~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 150 IGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEecc
Confidence 8999999998887664 4456679999999999999 00 0 012346677776 5888776643
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-13 Score=123.67 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=71.4
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..++++ |..|++++ ++..+.+.+.++ | .+.+..++...+ +++||+|++..+++|
T Consensus 75 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~ 149 (302)
T 3hem_A 75 TLLDIGCGWGSTMRHAVAEYDVNVIGLT--LSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEH 149 (302)
T ss_dssp EEEEETCTTSHHHHHHHHHHCCEEEEEE--CCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGG
T ss_pred EEEEeeccCcHHHHHHHHhCCCEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHh
Confidence 4599999999999999987 88888754 456666655443 3 356788888776 899999999999988
Q ss_pred ccCh------hhHHHHHHHHHhhhCCCC
Q 017839 296 WIPV------IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~------~~le~aL~Ei~RVLRPGG 317 (365)
+.++ +....++.++.|+|||||
T Consensus 150 ~~d~~~~~~~~~~~~~l~~~~~~LkpgG 177 (302)
T 3hem_A 150 FADGAGDAGFERYDTFFKKFYNLTPDDG 177 (302)
T ss_dssp TTCCSSCCCTTHHHHHHHHHHHSSCTTC
T ss_pred cCccccccchhHHHHHHHHHHHhcCCCc
Confidence 8543 345689999999999999
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-13 Score=124.83 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=83.6
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHcC-----CCcEEeccCCCC--CCCCCccceeEE-cchh-
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALRG-----LVPLHVPLQQRL--PLFDGVLDVVRC-GHAV- 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~Rg-----~v~~~~g~ae~L--PF~D~SFDlV~s-~~~L- 293 (365)
.|||||||+|.++..+++.+. .+++ +|++..+.+.+.++. .+.++.++++.+ ||++++||+|++ .+.+
T Consensus 63 ~vLDiGcGtG~~~~~l~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~ 140 (236)
T 1zx0_A 63 RVLEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS 140 (236)
T ss_dssp EEEEECCTTSHHHHHHHTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred eEEEEeccCCHHHHHHHhcCCCeEEE--EcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcccc
Confidence 359999999999999988664 5665 555677877766532 256788888888 999999999999 5553
Q ss_pred -hcccChhhHHHHHHHHHhhhCCCC----C-c-----------chh----hhhHHHHHHhhCCce--eeEEeecC
Q 017839 294 -NRWIPVIMMEFLFYDVDRVLRGGG----K-A-----------SDL----ENVYGPLIGKLGYKK--VKWATANK 345 (365)
Q Consensus 294 -~~w~d~~~le~aL~Ei~RVLRPGG----~-~-----------~~l----~~~~~~~l~~~gfk~--i~w~v~~K 345 (365)
..+ .....+.++.|++|+||||| . . ... .+.....+...||+. +.+.+..-
T Consensus 141 ~~~~-~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~i~~~~~~~ 214 (236)
T 1zx0_A 141 EETW-HTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRTEVMAL 214 (236)
T ss_dssp GGGT-TTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGEEEEEEEC
T ss_pred hhhh-hhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCCCceeEEEEec
Confidence 222 22344578999999999999 0 0 001 122346788999984 66665443
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=125.73 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=75.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
.|||||||+|.++..++++|..++++ |++..+.+.+.++....+..++++.+||++++||+|++..++.|+.++ ..
T Consensus 57 ~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~--~~ 132 (260)
T 2avn_A 57 RVLDLGGGTGKWSLFLQERGFEVVLV--DPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN--KD 132 (260)
T ss_dssp EEEEETCTTCHHHHHHHTTTCEEEEE--ESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC--HH
T ss_pred eEEEeCCCcCHHHHHHHHcCCeEEEE--eCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc--HH
Confidence 35999999999999999998888775 455778777776644347888999999999999999999888888653 56
Q ss_pred HHHHHHHhhhCCCC
Q 017839 304 FLFYDVDRVLRGGG 317 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG 317 (365)
.+|.|+.|+|||||
T Consensus 133 ~~l~~~~~~LkpgG 146 (260)
T 2avn_A 133 KAFSEIRRVLVPDG 146 (260)
T ss_dssp HHHHHHHHHEEEEE
T ss_pred HHHHHHHHHcCCCe
Confidence 89999999999999
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-13 Score=126.64 Aligned_cols=137 Identities=13% Similarity=0.038 Sum_probs=92.3
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc-----------------------------------CCC
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR-----------------------------------GLV 267 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R-----------------------------------g~v 267 (365)
.|||||||+|.++..++..|+ .|++ +|+++.|.+.+.++ ..+
T Consensus 58 ~vLDiGCG~G~~~~~~~~~~~~~v~g--~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 135 (263)
T 2a14_A 58 TLIDIGSGPTIYQVLAACDSFQDITL--SDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV 135 (263)
T ss_dssp EEEESSCTTCCGGGTTGGGTEEEEEE--EESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHE
T ss_pred eEEEeCCCccHHHHHHHHhhhcceee--ccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhh
Confidence 459999999998887777775 4665 45556676654431 001
Q ss_pred -cEEeccCCC-CCCC---CCccceeEEcchhhccc-ChhhHHHHHHHHHhhhCCCC-------Ccch-------------
Q 017839 268 -PLHVPLQQR-LPLF---DGVLDVVRCGHAVNRWI-PVIMMEFLFYDVDRVLRGGG-------KASD------------- 321 (365)
Q Consensus 268 -~~~~g~ae~-LPF~---D~SFDlV~s~~~L~~w~-d~~~le~aL~Ei~RVLRPGG-------~~~~------------- 321 (365)
.++.++... .|+. +++||+|+++.+++|.. +.+++..++.+++|+||||| ....
T Consensus 136 ~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~ 215 (263)
T 2a14_A 136 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVA 215 (263)
T ss_dssp EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCC
T ss_pred heEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccc
Confidence 166777665 4654 78999999999997753 33456789999999999999 1110
Q ss_pred -hhhhHHHHHHhhCCceeeEEeec-CCCC---CCCceEEEEeeecCC
Q 017839 322 -LENVYGPLIGKLGYKKVKWATAN-KPNS---KNGEVYLTALLQKPV 363 (365)
Q Consensus 322 -l~~~~~~~l~~~gfk~i~w~v~~-K~d~---~~~~~y~sall~KP~ 363 (365)
-.+.+.++++..||+.+.+.... +... +...+|+ .+-+|+.
T Consensus 216 ~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~-~~a~K~~ 261 (263)
T 2a14_A 216 LEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCC-IVARKKP 261 (263)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEE-EEEEECC
T ss_pred cCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEE-EEEEecC
Confidence 12357889999999998877543 2211 1223443 5678874
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=120.16 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=71.6
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
.+||||||+|.++..+ +. .+++ +|++..+.+.+.++ ..+.++.++++.+||++++||+|++..+++|+.+
T Consensus 39 ~vLdiG~G~G~~~~~l---~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--- 110 (211)
T 2gs9_A 39 SLLEVGAGTGYWLRRL---PYPQKVG--VEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED--- 110 (211)
T ss_dssp EEEEETCTTCHHHHHC---CCSEEEE--ECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC---
T ss_pred eEEEECCCCCHhHHhC---CCCeEEE--EeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC---
Confidence 4599999999999888 66 7776 45567777777665 3467888999999999999999999999988754
Q ss_pred HHHHHHHHHhhhCCCC
Q 017839 302 MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG 317 (365)
.+.++.|+.|+|||||
T Consensus 111 ~~~~l~~~~~~L~pgG 126 (211)
T 2gs9_A 111 VERVLLEARRVLRPGG 126 (211)
T ss_dssp HHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHcCCCC
Confidence 4579999999999999
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-14 Score=137.09 Aligned_cols=114 Identities=11% Similarity=0.180 Sum_probs=88.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCc----EEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVP----LHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~----~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+||||||+|.++..|+++|..+++ +|++..+.+.+.+++... +..++++.+||++++||+|++.++++|+.+
T Consensus 110 ~VLDiGcG~G~~~~~l~~~g~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d- 186 (416)
T 4e2x_A 110 FIVEIGCNDGIMLRTIQEAGVRHLG--FEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPY- 186 (416)
T ss_dssp EEEEETCTTTTTHHHHHHTTCEEEE--ECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTT-
T ss_pred EEEEecCCCCHHHHHHHHcCCcEEE--ECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhcCC-
Confidence 4599999999999999999988886 455677888777775421 223456788999999999999999998864
Q ss_pred hhHHHHHHHHHhhhCCCC-------Cc---------chh---------hhhHHHHHHhhCCceeeEEe
Q 017839 300 IMMEFLFYDVDRVLRGGG-------KA---------SDL---------ENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG-------~~---------~~l---------~~~~~~~l~~~gfk~i~w~v 342 (365)
+..++++++|+||||| .. ... .+.+..++++.||+.+....
T Consensus 187 --~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 187 --VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred --HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 4579999999999999 10 000 12477899999998876654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-13 Score=127.21 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=84.3
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-------------------------------------
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR------------------------------------- 264 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R------------------------------------- 264 (365)
.|||||||+|.++..|+++ +..|+++++ +..+.+.+.++
T Consensus 49 ~VLDiGCG~G~~~~~la~~~~~~~v~gvDi--s~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 49 DVLDLGCNVGHLTLSIACKWGPSRMVGLDI--DSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp EEEEESCTTCHHHHHHHHHTCCSEEEEEES--CHHHHHHHHHTC------------------------------------
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 4599999999999999987 578887554 46677666543
Q ss_pred ---------------------------CCCcEEeccCCCC-----CCCCCccceeEEcchhhccc---ChhhHHHHHHHH
Q 017839 265 ---------------------------GLVPLHVPLQQRL-----PLFDGVLDVVRCGHAVNRWI---PVIMMEFLFYDV 309 (365)
Q Consensus 265 ---------------------------g~v~~~~g~ae~L-----PF~D~SFDlV~s~~~L~~w~---d~~~le~aL~Ei 309 (365)
..+.+..++.... ++.+++||+|+|..++++.. +++.+..++.++
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~ 206 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRI 206 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHH
Confidence 2355677765443 47899999999999985432 344677899999
Q ss_pred HhhhCCCC---C----------c----chh----------hhhHHHHHHh--hCCceeeEEe
Q 017839 310 DRVLRGGG---K----------A----SDL----------ENVYGPLIGK--LGYKKVKWAT 342 (365)
Q Consensus 310 ~RVLRPGG---~----------~----~~l----------~~~~~~~l~~--~gfk~i~w~v 342 (365)
+|+||||| . . ++. .+.+..++.. +||+.++...
T Consensus 207 ~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 207 YRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEec
Confidence 99999999 0 0 010 2346678888 9998876553
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-13 Score=124.09 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=72.7
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCC-CCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPL-FDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF-~D~SFDlV~s~~~L~ 294 (365)
.|||||||+|.++..+++.+. .+++++ ++..+.+.+.++ + .+.++.+++..+|| ++++||+|++..+++
T Consensus 67 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 144 (298)
T 1ri5_A 67 SVLDLGCGKGGDLLKYERAGIGEYYGVD--IAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH 144 (298)
T ss_dssp EEEEETCTTTTTHHHHHHHTCSEEEEEE--SCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGG
T ss_pred eEEEECCCCCHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhh
Confidence 459999999999999988775 777654 456666655443 2 25788899999999 699999999999986
Q ss_pred cc-cChhhHHHHHHHHHhhhCCCC
Q 017839 295 RW-IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w-~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. ........++.++.|+|||||
T Consensus 145 ~~~~~~~~~~~~l~~~~~~LkpgG 168 (298)
T 1ri5_A 145 YAFSTSESLDIAQRNIARHLRPGG 168 (298)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCC
Confidence 52 334456789999999999999
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=122.05 Aligned_cols=90 Identities=8% Similarity=-0.017 Sum_probs=73.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cC-CCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||||||+|.++..++++|..|+++++ +..+.+.+.+ .| .+.++.+++..+++ +++||+|++..+++|+.
T Consensus 123 ~vLD~GcG~G~~~~~l~~~g~~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~- 198 (286)
T 3m70_A 123 KVLDLGCGQGRNSLYLSLLGYDVTSWDH--NENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLN- 198 (286)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSC-
T ss_pred cEEEECCCCCHHHHHHHHCCCeEEEEEC--CHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCC-
Confidence 3599999999999999999988887554 4566554433 34 36788889999988 89999999999997764
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
++....++.++.|+|||||
T Consensus 199 ~~~~~~~l~~~~~~LkpgG 217 (286)
T 3m70_A 199 RERVPSIIKNMKEHTNVGG 217 (286)
T ss_dssp GGGHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 4456789999999999999
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=4.5e-13 Score=125.17 Aligned_cols=119 Identities=16% Similarity=0.088 Sum_probs=81.9
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc---------------------C---------------C
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR---------------------G---------------L 266 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R---------------------g---------------~ 266 (365)
.|||||||+|.++..++.. +..|+++ |++..|.+.+.++ | .
T Consensus 74 ~vLDiGcG~G~~~~l~~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 151 (289)
T 2g72_A 74 TLIDIGSGPTVYQLLSACSHFEDITMT--DFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 151 (289)
T ss_dssp EEEEETCTTCCGGGTTGGGGCSEEEEE--CSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred eEEEECCCcChHHHHhhccCCCeEEEe--CCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhh
Confidence 4599999999955444442 6677764 5567777655431 1 0
Q ss_pred CcEEeccCCC-CCCC-----CCccceeEEcchhhcccCh-hhHHHHHHHHHhhhCCCC----C----------cch----
Q 017839 267 VPLHVPLQQR-LPLF-----DGVLDVVRCGHAVNRWIPV-IMMEFLFYDVDRVLRGGG----K----------ASD---- 321 (365)
Q Consensus 267 v~~~~g~ae~-LPF~-----D~SFDlV~s~~~L~~w~d~-~~le~aL~Ei~RVLRPGG----~----------~~~---- 321 (365)
+.++.++++. +||. +++||+|+|+.++++..+. .+++.+|.|+.|+||||| . ...
T Consensus 152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~ 231 (289)
T 2g72_A 152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 231 (289)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEEC
T ss_pred ceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeee
Confidence 2345557776 7754 5679999999999764332 246789999999999999 0 000
Q ss_pred ---hhhhHHHHHHhhCCceeeEEeec
Q 017839 322 ---LENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 322 ---l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
-.+.+..++++.||+.+.+....
T Consensus 232 ~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 232 VPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 12357889999999998887554
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=119.43 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=95.4
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc---CC--------------------------------C
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR---GL--------------------------------V 267 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R---g~--------------------------------v 267 (365)
.|||||||+|.++..+++.+. .|+++ |++..+.+.+.++ .. +
T Consensus 59 ~vLDlGcG~G~~~~~l~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v 136 (265)
T 2i62_A 59 LLIDIGSGPTIYQLLSACESFTEIIVS--DYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAI 136 (265)
T ss_dssp EEEEESCTTCCGGGTTGGGTEEEEEEE--ESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHE
T ss_pred EEEEECCCccHHHHHHhhcccCeEEEe--cCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhh
Confidence 459999999999999988886 77764 4556666655432 11 4
Q ss_pred -cEEeccCCCC-CCCC---CccceeEEcchhhcccCh-hhHHHHHHHHHhhhCCCC-------Ccc------h-------
Q 017839 268 -PLHVPLQQRL-PLFD---GVLDVVRCGHAVNRWIPV-IMMEFLFYDVDRVLRGGG-------KAS------D------- 321 (365)
Q Consensus 268 -~~~~g~ae~L-PF~D---~SFDlV~s~~~L~~w~d~-~~le~aL~Ei~RVLRPGG-------~~~------~------- 321 (365)
.+..+++..+ |+++ ++||+|++..++++..+. .....++.++.|+||||| ... .
T Consensus 137 ~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 216 (265)
T 2i62_A 137 KQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLP 216 (265)
T ss_dssp EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCC
T ss_pred eeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccc
Confidence 6777887775 4466 899999999999844321 245689999999999999 100 0
Q ss_pred -hhhhHHHHHHhhCCceeeEEeecC-CCC---CCCceEEEEeeecCCC
Q 017839 322 -LENVYGPLIGKLGYKKVKWATANK-PNS---KNGEVYLTALLQKPVS 364 (365)
Q Consensus 322 -l~~~~~~~l~~~gfk~i~w~v~~K-~d~---~~~~~y~sall~KP~~ 364 (365)
-.+.+..++++.||+.+.+..... .+. +...+ +..+-+|+..
T Consensus 217 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~-~~~~a~K~~~ 263 (265)
T 2i62_A 217 LGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGL-FSLVGRKPGR 263 (265)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCE-EEEEEECCC-
T ss_pred cCHHHHHHHHHHCCCEEEEEEEecccCCccccccceE-EEEEeccccc
Confidence 122578899999999998886653 221 12233 3467788754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=122.43 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=71.0
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++. |..|++++ ++..+.+.+.++ | .+.+..++.+.+| ++||+|++..+++|
T Consensus 93 ~vLDiGcG~G~~~~~la~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 93 TLLDIGCGWGTTMRRAVERFDVNVIGLT--LSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEH 167 (318)
T ss_dssp EEEEESCTTSHHHHHHHHHHCCEEEEEE--SCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGG
T ss_pred EEEEEcccchHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHh
Confidence 4599999999999999987 88888755 456676665543 3 3677888888876 79999999999988
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+ ++...++.++.|+|||||
T Consensus 168 ~~~-~~~~~~l~~~~~~LkpgG 188 (318)
T 2fk8_A 168 FGH-ENYDDFFKRCFNIMPADG 188 (318)
T ss_dssp TCG-GGHHHHHHHHHHHSCTTC
T ss_pred cCH-HHHHHHHHHHHHhcCCCc
Confidence 743 346689999999999999
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.9e-13 Score=119.88 Aligned_cols=107 Identities=9% Similarity=-0.020 Sum_probs=82.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-CCcEEeccC-CCCCCC-CCccceeEEcchhhcccChh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-LVPLHVPLQ-QRLPLF-DGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~a-e~LPF~-D~SFDlV~s~~~L~~w~d~~ 300 (365)
.|||||||+|.++..+++.+..|++++ ++..+.+.+.++. .+.++.+++ +.+||+ +++||+|+++. +
T Consensus 51 ~vLDiGcG~G~~~~~l~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~------~-- 120 (226)
T 3m33_A 51 RVLEAGCGHGPDAARFGPQAARWAAYD--FSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR------G-- 120 (226)
T ss_dssp EEEEESCTTSHHHHHHGGGSSEEEEEE--SCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES------C--
T ss_pred eEEEeCCCCCHHHHHHHHcCCEEEEEE--CCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC------C--
Confidence 359999999999999999988888754 5577777776653 367888888 789999 99999999972 1
Q ss_pred hHHHHHHHHHhhhCCCC--C---cchhhhhHHHHHHhhCCceeeEE
Q 017839 301 MMEFLFYDVDRVLRGGG--K---ASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG--~---~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
...++.++.|+||||| . .....+.+..++++.||+.+...
T Consensus 121 -~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 121 -PTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp -CSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEEEEE
T ss_pred -HHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEEEEE
Confidence 1257889999999999 1 11112346778999999876554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-13 Score=118.67 Aligned_cols=109 Identities=23% Similarity=0.267 Sum_probs=86.3
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHH
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEF 304 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~ 304 (365)
+||||||+|.++..++++ + ++|++..+.+.+.++ .+.++.++++.+|+++++||+|++..+++|+.+ .+.
T Consensus 51 vLDiG~G~G~~~~~l~~~----~--~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~ 120 (219)
T 1vlm_A 51 GVEIGVGTGRFAVPLKIK----I--GVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD---PER 120 (219)
T ss_dssp EEEETCTTSTTHHHHTCC----E--EEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC---HHH
T ss_pred EEEeCCCCCHHHHHHHHH----h--ccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC---HHH
Confidence 599999999999999876 3 345667777777766 467888899999999999999999999988754 357
Q ss_pred HHHHHHhhhCCCC-------Ccc-h---------------------hhhhHHHHHHhhCCceeeEEee
Q 017839 305 LFYDVDRVLRGGG-------KAS-D---------------------LENVYGPLIGKLGYKKVKWATA 343 (365)
Q Consensus 305 aL~Ei~RVLRPGG-------~~~-~---------------------l~~~~~~~l~~~gfk~i~w~v~ 343 (365)
++.++.|+||||| ... . -.+.+..++++.||+.+.....
T Consensus 121 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 121 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 9999999999999 100 0 1234678999999998876643
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=114.64 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=80.4
Q ss_pred EEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchhhccc--
Q 017839 225 GIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI-- 297 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~-- 297 (365)
|||||||+|.++..+++.|. .+++++ ++..+.+.+.++ ..+.+..+++..+||++++||+|++..++++..
T Consensus 46 vLdiGcG~G~~~~~l~~~~~~~v~~~D--~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 123 (215)
T 2pxx_A 46 ILVLGCGNSALSYELFLGGFPNVTSVD--YSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAG 123 (215)
T ss_dssp EEEETCTTCSHHHHHHHTTCCCEEEEE--SCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTT
T ss_pred EEEECCCCcHHHHHHHHcCCCcEEEEe--CCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhccc
Confidence 49999999999999999875 677654 456676666554 246788899999999999999999998886543
Q ss_pred ----------ChhhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHhhCC
Q 017839 298 ----------PVIMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGKLGY 335 (365)
Q Consensus 298 ----------d~~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~~gf 335 (365)
.......++.++.|+||||| ...........++...+|
T Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 175 (215)
T 2pxx_A 124 ERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYY 175 (215)
T ss_dssp CSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHHHCCGGG
T ss_pred cccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHHHhcccc
Confidence 12345689999999999999 111112223456666665
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-13 Score=119.69 Aligned_cols=87 Identities=15% Similarity=0.029 Sum_probs=72.8
Q ss_pred EEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 225 GIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
|||||||+|.++..++++ +..+++++ ++..+.+.+.++ ..+.+..++++.+| ++++||+|++..+++++.+
T Consensus 37 vLdiG~G~G~~~~~l~~~~~~~~v~~~D--~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~--- 110 (259)
T 2p35_A 37 GYDLGCGPGNSTELLTDRYGVNVITGID--SDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVPD--- 110 (259)
T ss_dssp EEEETCTTTHHHHHHHHHHCTTSEEEEE--SCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTT---
T ss_pred EEEecCcCCHHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCCC---
Confidence 599999999999999987 77887654 457777777665 24678899999999 8999999999999976543
Q ss_pred HHHHHHHHHhhhCCCC
Q 017839 302 MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG 317 (365)
...++.++.|+|||||
T Consensus 111 ~~~~l~~~~~~L~pgG 126 (259)
T 2p35_A 111 HLAVLSQLMDQLESGG 126 (259)
T ss_dssp HHHHHHHHGGGEEEEE
T ss_pred HHHHHHHHHHhcCCCe
Confidence 4579999999999999
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=114.73 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=76.2
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHH
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEF 304 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~ 304 (365)
+||||||+|.++..++ ..+++++++. . .+.+..++++.+|+++++||+|++..+++ +.+ ...
T Consensus 71 vLDiG~G~G~~~~~l~---~~v~~~D~s~--~---------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~---~~~ 132 (215)
T 2zfu_A 71 VADFGCGDCRLASSIR---NPVHCFDLAS--L---------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTN---IRD 132 (215)
T ss_dssp EEEETCTTCHHHHHCC---SCEEEEESSC--S---------STTEEESCTTSCSCCTTCEEEEEEESCCC-SSC---HHH
T ss_pred EEEECCcCCHHHHHhh---ccEEEEeCCC--C---------CceEEEeccccCCCCCCCEeEEEEehhcc-ccC---HHH
Confidence 5999999999998884 4666655542 2 35788899999999999999999999994 533 457
Q ss_pred HHHHHHhhhCCCC------Ccc--hhhhhHHHHHHhhCCceeeE
Q 017839 305 LFYDVDRVLRGGG------KAS--DLENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 305 aL~Ei~RVLRPGG------~~~--~l~~~~~~~l~~~gfk~i~w 340 (365)
++.++.|+||||| ... .-.+.+..++++.||+.+..
T Consensus 133 ~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 176 (215)
T 2zfu_A 133 FLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSK 176 (215)
T ss_dssp HHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 9999999999999 111 11234788999999987753
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-13 Score=124.02 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=72.2
Q ss_pred eEEEEcCcccHHHHHHhh---cCCeEEEeccCCChhHHHHHHHc--------CCCcEEeccCCCCCCCC------Cccce
Q 017839 224 LGIDVGGATGSFAARMKL---YNITILTTTMNLGAPYSEAAALR--------GLVPLHVPLQQRLPLFD------GVLDV 286 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae---~gv~Vv~~~ldl~~~~~e~a~~R--------g~v~~~~g~ae~LPF~D------~SFDl 286 (365)
.+||||||+|.++..|++ .+..|++++ ++..+.+.+.++ ..+.++.++++.+|+.+ ++||+
T Consensus 39 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 116 (299)
T 3g5t_A 39 LLVDVGCGPGTATLQMAQELKPFEQIIGSD--LSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDM 116 (299)
T ss_dssp EEEEETCTTTHHHHHHHHHSSCCSEEEEEE--SCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEE
T ss_pred EEEEECCCCCHHHHHHHHhCCCCCEEEEEe--CCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeE
Confidence 459999999999999994 567888755 456676665543 24678899999999988 99999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|++..+++|+ + ...++.++.|+|||||
T Consensus 117 V~~~~~l~~~-~---~~~~l~~~~~~LkpgG 143 (299)
T 3g5t_A 117 ITAVECAHWF-D---FEKFQRSAYANLRKDG 143 (299)
T ss_dssp EEEESCGGGS-C---HHHHHHHHHHHEEEEE
T ss_pred EeHhhHHHHh-C---HHHHHHHHHHhcCCCc
Confidence 9999999776 3 4579999999999999
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-12 Score=109.72 Aligned_cols=92 Identities=11% Similarity=-0.012 Sum_probs=65.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCC-CCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLP-LFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LP-F~D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++..|++++..|++++ ++..+.+.+.++ | .+.++.++.+.++ +.+++||+|+++....+.
T Consensus 25 ~vLDiGcG~G~~~~~la~~~~~v~~vD--~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~ 102 (185)
T 3mti_A 25 IVVDATMGNGNDTAFLAGLSKKVYAFD--VQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPS 102 (185)
T ss_dssp EEEESCCTTSHHHHHHHTTSSEEEEEE--SCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC----
T ss_pred EEEEEcCCCCHHHHHHHHhCCEEEEEE--CCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCC
Confidence 459999999999999999888888754 456676655432 3 3667777777754 668999999987422121
Q ss_pred ------cChhhHHHHHHHHHhhhCCCC
Q 017839 297 ------IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ------~d~~~le~aL~Ei~RVLRPGG 317 (365)
........++.++.|+|||||
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~LkpgG 129 (185)
T 3mti_A 103 ADKSVITKPHTTLEAIEKILDRLEVGG 129 (185)
T ss_dssp -------CHHHHHHHHHHHHHHEEEEE
T ss_pred cchhcccChhhHHHHHHHHHHhcCCCc
Confidence 011234578999999999999
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-12 Score=124.32 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=70.5
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCC--CCCCCccceeEEcc
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRL--PLFDGVLDVVRCGH 291 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~L--PF~D~SFDlV~s~~ 291 (365)
+.+||||||+|.++..++++ +..+++ +|+ ..+.+.+.++ + .+.++.++.... |++ ++||+|++..
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 181 KRLLDIGGNTGKWATQCVQYNKEVEVTI--VDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp SEEEEESCTTCHHHHHHHHHSTTCEEEE--EEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEE--EeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 34699999999999999885 566665 454 5566655543 3 367888887764 677 8999999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++++|.++ ....+|++++|+|||||
T Consensus 257 vlh~~~~~-~~~~~l~~~~~~L~pgG 281 (363)
T 3dp7_A 257 FLDCFSEE-EVISILTRVAQSIGKDS 281 (363)
T ss_dssp CSTTSCHH-HHHHHHHHHHHHCCTTC
T ss_pred hhhhCCHH-HHHHHHHHHHHhcCCCc
Confidence 99999764 34578999999999999
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-13 Score=121.87 Aligned_cols=88 Identities=16% Similarity=0.057 Sum_probs=64.7
Q ss_pred EEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHcC-----CCcEEeccCCC--CCCCCCccceeEE-----cc
Q 017839 225 GIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALRG-----LVPLHVPLQQR--LPLFDGVLDVVRC-----GH 291 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~Rg-----~v~~~~g~ae~--LPF~D~SFDlV~s-----~~ 291 (365)
|||||||+|.++..+++++ ..+++ +|+++.+.+.+.++. .+.++.++++. .++++++||.|+. ..
T Consensus 64 VLdiG~G~G~~~~~~~~~~~~~v~~--id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~ 141 (236)
T 3orh_A 64 VLEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSE 141 (236)
T ss_dssp EEEECCTTSHHHHHHTTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBG
T ss_pred EEEECCCccHHHHHHHHhCCcEEEE--EeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeeccc
Confidence 4999999999999998875 45554 455677777766532 14566777654 3688999999974 44
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+.|+. +.+.++.|+.|||||||
T Consensus 142 ~~~~~~---~~~~~~~e~~rvLkPGG 164 (236)
T 3orh_A 142 ETWHTH---QFNFIKNHAFRLLKPGG 164 (236)
T ss_dssp GGTTTH---HHHHHHHTHHHHEEEEE
T ss_pred chhhhc---chhhhhhhhhheeCCCC
Confidence 444443 35689999999999999
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.2e-12 Score=119.63 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=83.4
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
..+||||||+|.++..++++ +..+++ +|+ ..+.+.+.++ + .+.+..++.. -|++. .||+|++.+++
T Consensus 171 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 171 GHVVDVGGGSGGLLSALLTAHEDLSGTV--LDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CEEEEeCCChhHHHHHHHHHCCCCeEEE--ecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 34599999999999999885 456655 455 5565555432 3 4778888875 46665 89999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-------Ccch--------------------hhhhHHHHHHhhCCceeeEE
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-------KASD--------------------LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~--------------------l~~~~~~~l~~~gfk~i~w~ 341 (365)
++|.++ ....+|++++|+||||| ..++ -.+.|..++++.||+.++..
T Consensus 246 h~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 319 (332)
T 3i53_A 246 HDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH 319 (332)
T ss_dssp GGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 999764 34679999999999999 1111 02347789999999988654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=104.06 Aligned_cols=130 Identities=22% Similarity=0.212 Sum_probs=88.5
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC--------CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP--------LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP--------F~D~SFDlV~s~~~ 292 (365)
.+||+|||+|.++..++++ +..+++++++ . +.+ ...+.+..++...++ +++++||+|++..+
T Consensus 25 ~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~--~-~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~ 97 (180)
T 1ej0_A 25 TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLL--P-MDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp EEEEESCTTCHHHHHHHHHHCTTCEEEEEESS--C-CCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEeCCCCCHHHHHHHHHhCCCCeEEEEECc--c-ccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEECCC
Confidence 4599999999999999887 3677776554 2 221 134677888888887 88999999999887
Q ss_pred hhcccCh--hh------HHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEE
Q 017839 293 VNRWIPV--IM------MEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTA 357 (365)
Q Consensus 293 L~~w~d~--~~------le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sa 357 (365)
+++.... +. ...++.++.|+||||| ..+.... +...++.. |+.+.+...........|.|+-+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 175 (180)
T 1ej0_A 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDE-YLREIRSL-FTKVKVRKPDSSRARSREVYIVA 175 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHH-HHHHHHHH-EEEEEEECCTTSCTTCCEEEEEE
T ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHH-HHHHHHHh-hhhEEeecCCcccccCceEEEEE
Confidence 7433221 00 1478999999999999 2222222 44455554 77776553333333677999888
Q ss_pred eeecC
Q 017839 358 LLQKP 362 (365)
Q Consensus 358 ll~KP 362 (365)
.-.||
T Consensus 176 ~~~~~ 180 (180)
T 1ej0_A 176 TGRKP 180 (180)
T ss_dssp EEECC
T ss_pred ccCCC
Confidence 77765
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.6e-12 Score=109.02 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=81.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccCh----
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV---- 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~---- 299 (365)
.+||+|||+|.++..+++++ .|+++++ +..+.+. ...+.++.+++.. |+++++||+|+++..+++..+.
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~-~v~gvD~--s~~~~~~---~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~ 98 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN-TVVSTDL--NIRALES---HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIG 98 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS-EEEEEES--CHHHHHT---CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTB
T ss_pred eEEEeccCccHHHHHHHhcC-cEEEEEC--CHHHHhc---ccCCeEEECChhh-hcccCCCCEEEECCCCccCCcccccc
Confidence 35999999999999999999 8877554 4555544 4457889999877 7888999999998877432221
Q ss_pred --hhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEe
Q 017839 300 --IMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 300 --~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v 342 (365)
......+.++.|.| ||| ......+.+.+++++.||+......
T Consensus 99 ~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 99 GGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp CCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEe
Confidence 11235789999999 999 1222233477899999998765544
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=110.86 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=80.3
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC--CCcEEeccCCCCC--CCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQRLP--LFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~LP--F~D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..+++. +..++++++ +..+.+.+.+ .| .+.++.+++..++ |++++||+|++....
T Consensus 44 ~vLDiGcG~G~~~~~la~~~p~~~v~gvD~--s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~ 121 (214)
T 1yzh_A 44 IHVEVGSGKGAFVSGMAKQNPDINYIGIDI--QKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 121 (214)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred eEEEEccCcCHHHHHHHHHCCCCCEEEEEc--CHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC
Confidence 4699999999999999987 467877554 4566555443 23 3668889988888 889999999998653
Q ss_pred hcccChh------hHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceee
Q 017839 294 NRWIPVI------MMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 294 ~~w~d~~------~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~ 339 (365)
.|.... ..+.++.++.|+||||| ...+..+.....++..||+.+.
T Consensus 122 -~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 122 -PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred -CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeee
Confidence 343210 12368999999999999 2222223345678888987654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-12 Score=114.32 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=71.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.|||||||+|.++..++++|..+++++ ++..+.+.+.++ + .+.++.+++..+|++ ++||+|+|.....++.+
T Consensus 44 ~vLDlGcG~G~~~~~l~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~ 120 (252)
T 1wzn_A 44 RVLDLACGTGIPTLELAERGYEVVGLD--LHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFD 120 (252)
T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSC
T ss_pred EEEEeCCCCCHHHHHHHHCCCeEEEEE--CCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcCC
Confidence 459999999999999999998888754 456676655432 3 367888999889875 68999998754434444
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
.+....++.++.|+|||||
T Consensus 121 ~~~~~~~l~~~~~~L~pgG 139 (252)
T 1wzn_A 121 EEDLRKLFSKVAEALKPGG 139 (252)
T ss_dssp HHHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCe
Confidence 4556789999999999999
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-12 Score=112.74 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=78.4
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCC--CCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLP--LFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LP--F~D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..|++. +..++++ |++..+.+.+.+ .|. +.++.+++..++ |++++||.|++.+..
T Consensus 41 ~vLDiGcG~G~~~~~la~~~p~~~v~gi--D~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~ 118 (213)
T 2fca_A 41 IHIEVGTGKGQFISGMAKQNPDINYIGI--ELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 118 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred eEEEEecCCCHHHHHHHHHCCCCCEEEE--EechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCC
Confidence 4699999999999999987 5778764 555667665543 343 678888988887 889999999986543
Q ss_pred hcccChh------hHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCcee
Q 017839 294 NRWIPVI------MMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 294 ~~w~d~~------~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i 338 (365)
.|.... ....++.++.|+||||| ......+.....++..||+..
T Consensus 119 -p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 119 -PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred -CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 343210 02368999999999999 122222223456777888654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=107.97 Aligned_cols=104 Identities=19% Similarity=0.081 Sum_probs=76.2
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..+++.+ ..+++++ ++..+.+.+.++ | .+.++.+++.......++||+|++..++.
T Consensus 43 ~vLDiG~G~G~~~~~la~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~- 119 (204)
T 3e05_A 43 VMWDIGAGSASVSIEASNLMPNGRIFALE--RNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG- 119 (204)
T ss_dssp EEEEETCTTCHHHHHHHHHCTTSEEEEEE--CCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT-
T ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc-
Confidence 45999999999999999886 7777654 446666655432 3 35678888755544557899999988764
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGY 335 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gf 335 (365)
..+.++.++.|+||||| ...+..+.+..++++.||
T Consensus 120 -----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 120 -----MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp -----CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred -----CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 24479999999999999 222223346778999998
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.5e-12 Score=122.81 Aligned_cols=114 Identities=19% Similarity=0.172 Sum_probs=83.9
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChh
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
+.+||||||+|.++..++++ +.++++ +|+ ..+.+.+.++..+.++.++... |++++ |+|++.+++|+|.+.
T Consensus 205 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~- 277 (368)
T 3reo_A 205 TTIVDVGGGTGAVASMIVAKYPSINAIN--FDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDE- 277 (368)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHH-
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEE--Eeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHH-
Confidence 45699999999999999886 466665 454 4454444334457888888776 77765 999999999999764
Q ss_pred hHHHHHHHHHhhhCCCC-------Ccch----------------------------hhhhHHHHHHhhCCceeeEEee
Q 017839 301 MMEFLFYDVDRVLRGGG-------KASD----------------------------LENVYGPLIGKLGYKKVKWATA 343 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG-------~~~~----------------------------l~~~~~~~l~~~gfk~i~w~v~ 343 (365)
....+|++++|+||||| ..++ -.+.|..++++.||+.++..-.
T Consensus 278 ~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 355 (368)
T 3reo_A 278 HCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASC 355 (368)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEe
Confidence 34578999999999999 1000 0124778999999998876543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-12 Score=118.68 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=69.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCC-----CCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPL-----FDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF-----~D~SFDlV~s~~~L~~w~d 298 (365)
.|||||||||.++..|+++|..|+++ |++..|.+.+.++-.-..+..+.+.+++ .+++||+|++..+++|+..
T Consensus 48 ~VLDlGcGtG~~a~~La~~g~~V~gv--D~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~ 125 (261)
T 3iv6_A 48 TVAVIGASTRFLIEKALERGASVTVF--DFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTT 125 (261)
T ss_dssp EEEEECTTCHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCH
T ss_pred EEEEEeCcchHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhCCH
Confidence 35999999999999999999888874 5567888877765322233344445444 2679999999999988764
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
. ....++.++.|+| |||
T Consensus 126 ~-~~~~~l~~l~~lL-PGG 142 (261)
T 3iv6_A 126 E-EARRACLGMLSLV-GSG 142 (261)
T ss_dssp H-HHHHHHHHHHHHH-TTS
T ss_pred H-HHHHHHHHHHHhC-cCc
Confidence 3 4667999999999 999
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-12 Score=118.46 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=85.4
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..++++ +..++++++ + .+.+.+.++ | .+.++.++....|++++ ||+|++..+++
T Consensus 168 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~ 243 (335)
T 2r3s_A 168 KVLDISASHGLFGIAVAQHNPNAEIFGVDW--A-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLH 243 (335)
T ss_dssp EEEEETCTTCHHHHHHHHHCTTCEEEEEEC--H-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCGG
T ss_pred EEEEECCCcCHHHHHHHHHCCCCeEEEEec--H-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchhc
Confidence 4599999999999999987 567776544 4 455544432 3 36788888888888776 99999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC-------Ccch-------------------------hhhhHHHHHHhhCCceeeEE
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG-------KASD-------------------------LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG-------~~~~-------------------------l~~~~~~~l~~~gfk~i~w~ 341 (365)
+|.++ ....+|+++.|+||||| ..++ -.+.|..++++.||+.+++.
T Consensus 244 ~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 244 HFDVA-TCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp GSCHH-HHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred cCCHH-HHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 98643 45689999999999999 1110 02347789999999988764
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.1e-12 Score=121.72 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=84.3
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChh
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
..+||||||+|.++..++++ +.++++ +|+ ..+.+.+.++..+.++.++... |++++ |+|++.+++|+|.+.
T Consensus 203 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~- 275 (364)
T 3p9c_A 203 GTLVDVGGGVGATVAAIAAHYPTIKGVN--FDL-PHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQ- 275 (364)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHH-
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCeEEE--ecC-HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHH-
Confidence 44699999999999999886 466654 454 4444444334457888898877 88865 999999999999754
Q ss_pred hHHHHHHHHHhhhCCCC-------Ccch----------------------------hhhhHHHHHHhhCCceeeEEee
Q 017839 301 MMEFLFYDVDRVLRGGG-------KASD----------------------------LENVYGPLIGKLGYKKVKWATA 343 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG-------~~~~----------------------------l~~~~~~~l~~~gfk~i~w~v~ 343 (365)
....+|++++|+||||| ..++ -.+.|..++++.||+.++..-.
T Consensus 276 ~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 353 (364)
T 3p9c_A 276 HCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYI 353 (364)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEc
Confidence 45579999999999999 1000 0124778999999998876533
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=123.95 Aligned_cols=92 Identities=9% Similarity=0.070 Sum_probs=65.8
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHc----CC--------CcEEeccC------CCC--CCCCC
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALR----GL--------VPLHVPLQ------QRL--PLFDG 282 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~R----g~--------v~~~~g~a------e~L--PF~D~ 282 (365)
.|||||||+|..+..++..+ ..|+|+ |+++.|.+.|.++ +. +.+.+++. +.| +|+++
T Consensus 51 ~VLDlGCG~G~~l~~~~~~~~~~v~Gi--D~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~ 128 (302)
T 2vdw_A 51 KVLAIDFGNGADLEKYFYGEIALLVAT--DPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG 128 (302)
T ss_dssp EEEETTCTTTTTHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred eEEEEecCCcHhHHHHHhcCCCeEEEE--ECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence 35999999997666555554 678764 5567787766553 21 23555554 434 57889
Q ss_pred ccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 283 VLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+||+|+|..++++..+.+....+|+++.|+|||||
T Consensus 129 ~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG 163 (302)
T 2vdw_A 129 KFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGG 163 (302)
T ss_dssp CEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEE
T ss_pred CeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCC
Confidence 99999999998653333345689999999999999
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=118.78 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=82.5
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCC-CCCCccceeEEcch
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLP-LFDGVLDVVRCGHA 292 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LP-F~D~SFDlV~s~~~ 292 (365)
+.+||||||+|.++..++++ +..+++. |+ ..+.+.+.+ .+ .+.++.++....+ |.++.||+|++..+
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 181 RTVIDLAGGHGTYLAQVLRRHPQLTGQIW--DL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEE--EC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCeEEEE--EC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 34599999999999999986 4666654 44 345444332 23 3678888877765 34567999999999
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC-------C------cch-------------------hhhhHHHHHHhhCCceee
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG-------K------ASD-------------------LENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG-------~------~~~-------------------l~~~~~~~l~~~gfk~i~ 339 (365)
+++|.+. ....+|+++.|+||||| . ... -.+.|..++++.||+.++
T Consensus 258 lh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 258 LHYFDAR-EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp GGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred cccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence 9998654 35689999999999999 0 000 022477899999999887
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=107.84 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=78.8
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc----CC--CcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR----GL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||||||+|.++..+++.+. .+++++ ++..+.+.+.++ +. +.+..++... +.+++||+|++...+++
T Consensus 63 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~~~- 137 (205)
T 3grz_A 63 TVADVGTGSGILAIAAHKLGAKSVLATD--ISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANILAEI- 137 (205)
T ss_dssp EEEEETCTTSHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCHHH-
T ss_pred EEEEECCCCCHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCcHHH-
Confidence 459999999999999998864 777654 456666655443 32 6677777654 45799999999887754
Q ss_pred cChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeE
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w 340 (365)
++.++.++.|+||||| ......+.+..++++.||+.+..
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK 182 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence 2468999999999999 12222334778999999987754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-11 Score=102.76 Aligned_cols=111 Identities=18% Similarity=0.160 Sum_probs=77.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----CC---CcEEeccC-CCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----GL---VPLHVPLQ-QRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g~---v~~~~g~a-e~LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..+++. +..++++ |++..+.+.+.++ |. + ++.+++ +.+|..+++||+|++..++
T Consensus 28 ~vldiG~G~G~~~~~l~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 28 TLWDIGGGSGSIAIEWLRSTPQTTAVCF--EISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEESTTTTHHHHHHHTTSSSEEEEEE--CSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred eEEEeCCCCCHHHHHHHHHCCCCeEEEE--eCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCcc
Confidence 4599999999999999987 5677764 5556676665543 32 3 566665 4555555899999999988
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeec
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
++ ..++.++.|+||||| ...+-......++++.|+...+..+.+
T Consensus 105 ~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (178)
T 3hm2_A 105 TA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISSFAISH 154 (178)
T ss_dssp TC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred cH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEEEeec
Confidence 65 148899999999999 112222346678889988776655544
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-11 Score=107.31 Aligned_cols=111 Identities=17% Similarity=0.067 Sum_probs=80.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||||||+|.++..+++++..|+++++ +..+.+.+.++ | .+.++.+++.........||+|++..++
T Consensus 58 ~vLDlGcG~G~~~~~la~~~~~v~~vD~--s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~--- 132 (204)
T 3njr_A 58 LLWDIGGGSGSVSVEWCLAGGRAITIEP--RADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG--- 132 (204)
T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC---
T ss_pred EEEEecCCCCHHHHHHHHcCCEEEEEeC--CHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc---
Confidence 4599999999999999998888887554 46666655432 3 3567888887733344689999987644
Q ss_pred cChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
..+ ++.++.|+||||| ..+... ....++++.||+..++.+.+.
T Consensus 133 ----~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~-~~~~~l~~~g~~i~~i~~~~~ 182 (204)
T 3njr_A 133 ----SQA-LYDRLWEWLAPGTRIVANAVTLESET-LLTQLHARHGGQLLRIDIAQA 182 (204)
T ss_dssp ----CHH-HHHHHHHHSCTTCEEEEEECSHHHHH-HHHHHHHHHCSEEEEEEEEEE
T ss_pred ----cHH-HHHHHHHhcCCCcEEEEEecCcccHH-HHHHHHHhCCCcEEEEEeecc
Confidence 234 8999999999999 222232 356788999998877766543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=106.07 Aligned_cols=125 Identities=16% Similarity=0.132 Sum_probs=78.9
Q ss_pred eEEEEcCcccHHHHHHhhc----CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC---------------------
Q 017839 224 LGIDVGGATGSFAARMKLY----NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP--------------------- 278 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~----gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP--------------------- 278 (365)
.+||||||+|.++..++++ +..|++++++... ....+.+..+++..++
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 97 (201)
T 2plw_A 25 IILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK 97 (201)
T ss_dssp EEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-------CCTTCEEEECCTTTTSSCCC-----------CHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-------CCCCceEEEccccchhhhhhccccccccccchhhHHH
Confidence 4699999999999999886 3577776654211 1123567888888877
Q ss_pred ----CCCCccceeEEcchhhcccC----hh-----hHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 279 ----LFDGVLDVVRCGHAVNRWIP----VI-----MMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 279 ----F~D~SFDlV~s~~~L~~w~d----~~-----~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
|++++||+|++..++ ||.. +. ..+.++.++.|+||||| ..++..+ +...++. .|..+
T Consensus 98 ~~~~~~~~~fD~v~~~~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~-l~~~l~~-~f~~v 174 (201)
T 2plw_A 98 LKEILQDKKIDIILSDAAV-PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNN-LKTYLKG-MFQLV 174 (201)
T ss_dssp HHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHH-HHHHHHT-TEEEE
T ss_pred HHhhcCCCcccEEEeCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHH-HHHHHHH-HHheE
Confidence 778899999998766 3321 11 01247899999999999 2222222 3444544 36666
Q ss_pred eEEeecCCCCCCCceEEEEe
Q 017839 339 KWATANKPNSKNGEVYLTAL 358 (365)
Q Consensus 339 ~w~v~~K~d~~~~~~y~sal 358 (365)
++...........|.|+-+.
T Consensus 175 ~~~~~~~~r~~s~e~y~v~~ 194 (201)
T 2plw_A 175 HTTKPKASRNESREIYLVCK 194 (201)
T ss_dssp EECCCC-----CCEEEEEEE
T ss_pred EEECCcccCCcCceEEEEEe
Confidence 54322211125779998654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=114.96 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=82.6
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-------CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
..+||||||+|.++..++++ +..+++++ + ..+.+.+.++ ..+.++.++... |++ +.||+|++..++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D--~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLD--R-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEE--C-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeC--c-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhc
Confidence 35699999999999999886 46666544 4 3444444332 347788888766 665 689999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-------Ccch-----------------------hhhhHHHHHHhhCCceeeEE
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-------KASD-----------------------LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~-----------------------l~~~~~~~l~~~gfk~i~w~ 341 (365)
++|.+. ....+++++.|+||||| ..++ -.+.|..++++.||+.++..
T Consensus 244 ~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 320 (334)
T 2ip2_A 244 GDLDEA-ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV 320 (334)
T ss_dssp GGCCHH-HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEE
Confidence 999754 34579999999999999 1000 02346789999999987654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.5e-11 Score=114.84 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=86.1
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..++++ +..++++ |+ ..+.+.+.++ + .+.++.++....|+++. |+|++..+++
T Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~vlh 267 (359)
T 1x19_A 193 KMIDVGGGIGDISAAMLKHFPELDSTIL--NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRILY 267 (359)
T ss_dssp EEEEESCTTCHHHHHHHHHCTTCEEEEE--EC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESCGG
T ss_pred EEEEECCcccHHHHHHHHHCCCCeEEEE--ec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEechhc
Confidence 4599999999999999987 4677654 55 5566555432 3 37788899888888765 9999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC-------Ccc--------------------------hhhhhHHHHHHhhCCceeeEE
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG-------KAS--------------------------DLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG-------~~~--------------------------~l~~~~~~~l~~~gfk~i~w~ 341 (365)
+|.++ ....+|+++.|+||||| ..+ --.+.|..++++.||+.+++.
T Consensus 268 ~~~d~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~ 346 (359)
T 1x19_A 268 SANEQ-LSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMV 346 (359)
T ss_dssp GSCHH-HHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEE
T ss_pred cCCHH-HHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEE
Confidence 99753 35679999999999999 100 112357889999999988765
Q ss_pred e
Q 017839 342 T 342 (365)
Q Consensus 342 v 342 (365)
.
T Consensus 347 ~ 347 (359)
T 1x19_A 347 R 347 (359)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=119.08 Aligned_cols=127 Identities=12% Similarity=0.137 Sum_probs=83.5
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc-CCCcEEe-ccCCCCC---CCCCccceeEEcchhhcc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR-GLVPLHV-PLQQRLP---LFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R-g~v~~~~-g~ae~LP---F~D~SFDlV~s~~~L~~w 296 (365)
+++||||||||.|+..|+++|. .|++++ ++..|.+.++++ ..+.... .++..++ +++.+||+|++..++++.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga~~V~aVD--vs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl 164 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGAKLVYAVD--VGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISL 164 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEC--SSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCG
T ss_pred cEEEecCCCccHHHHHHHhCCCCEEEEEE--CCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhhH
Confidence 3569999999999999999874 787654 445566553332 1221221 2333333 345579999998877532
Q ss_pred cChhhHHHHHHHHHhhhCCCC-----Ccch----------------------hhhhHHHHHHhhCCceeeEEeecCCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG-----KASD----------------------LENVYGPLIGKLGYKKVKWATANKPNSK 349 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG-----~~~~----------------------l~~~~~~~l~~~gfk~i~w~v~~K~d~~ 349 (365)
..+|.|++|+||||| ..++ ..+.+..+++..||....+....-...+
T Consensus 165 ------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~ 238 (291)
T 3hp7_A 165 ------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGH 238 (291)
T ss_dssp ------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGG
T ss_pred ------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Confidence 258999999999999 0010 0123457888999998888877766555
Q ss_pred CCceEEEE
Q 017839 350 NGEVYLTA 357 (365)
Q Consensus 350 ~~~~y~sa 357 (365)
.+.-|+..
T Consensus 239 gn~e~l~~ 246 (291)
T 3hp7_A 239 GNIEFLAH 246 (291)
T ss_dssp GCCCEEEE
T ss_pred cCHHHHHH
Confidence 55567643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=108.83 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=77.5
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHH--------HcC--CCcEEeccCCCCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAA--------LRG--LVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~--------~Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.+||||||+|.++..|+++ +..|+++++ +..|.+.++ .++ .+.++.++++++||.+++ |.|....
T Consensus 30 ~vLDiGcG~G~~~~~la~~~p~~~v~gvD~--s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~ 106 (218)
T 3mq2_A 30 VVLDVGTGDGKHPYKVARQNPSRLVVALDA--DKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLM 106 (218)
T ss_dssp EEEEESCTTCHHHHHHHHHCTTEEEEEEES--CGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEES
T ss_pred EEEEecCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEc
Confidence 4599999999999999998 577776544 456554321 123 357888999999999888 8877433
Q ss_pred ---hhh--cccChhhHHHHHHHHHhhhCCCC----C---------cch-----------hhhhHHHHHHhhCCceeeEEe
Q 017839 292 ---AVN--RWIPVIMMEFLFYDVDRVLRGGG----K---------ASD-----------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 292 ---~L~--~w~d~~~le~aL~Ei~RVLRPGG----~---------~~~-----------l~~~~~~~l~~~gfk~i~w~v 342 (365)
.++ |..+. ..++.|+.|+||||| . ..+ ..+.+.++++..||+......
T Consensus 107 ~~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~ 183 (218)
T 3mq2_A 107 PWGSLLRGVLGSS---PEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRY 183 (218)
T ss_dssp CCHHHHHHHHTSS---SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cchhhhhhhhccH---HHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeeec
Confidence 221 22222 368999999999999 0 000 122366789999998765443
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-11 Score=116.99 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=84.5
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
..+||||||+|.++..++++ +..+++ +|+ ..+.+.+.+ .+ .+.+..++.. .|+++ .||+|++..++
T Consensus 204 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 278 (369)
T 3gwz_A 204 ATAVDIGGGRGSLMAAVLDAFPGLRGTL--LER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVL 278 (369)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCG
T ss_pred cEEEEeCCCccHHHHHHHHHCCCCeEEE--EcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhh
Confidence 34699999999999999987 466665 455 555555443 23 4778888876 57777 89999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-------Ccch----------------------hhhhHHHHHHhhCCceeeEEe
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-------KASD----------------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~----------------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
++|.++ ....+|+++.|+||||| ..++ -.+.|..++++.||+.++..-
T Consensus 279 h~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 279 HDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp GGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred ccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 988754 34469999999999999 1111 023477899999999887643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.1e-12 Score=112.77 Aligned_cols=90 Identities=12% Similarity=-0.028 Sum_probs=71.3
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC---CCcEEeccCCCCCCCC-----CccceeEEcchhhcc
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG---LVPLHVPLQQRLPLFD-----GVLDVVRCGHAVNRW 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg---~v~~~~g~ae~LPF~D-----~SFDlV~s~~~L~~w 296 (365)
+||||||+|.++..|++.+..|++++ ++..+.+.+.++. .+.++.+++..+++.+ ..||+|++..+++++
T Consensus 60 vLD~GcG~G~~~~~la~~~~~v~gvD--~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~ 137 (245)
T 3ggd_A 60 LIDFACGNGTQTKFLSQFFPRVIGLD--VSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHI 137 (245)
T ss_dssp EEEETCTTSHHHHHHHHHSSCEEEEE--SCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTS
T ss_pred EEEEcCCCCHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhhcC
Confidence 59999999999999999887887654 4567777766542 3678888888876543 349999999999765
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
. .++...++.++.|+|||||
T Consensus 138 ~-~~~~~~~l~~~~~~LkpgG 157 (245)
T 3ggd_A 138 P-VEKRELLGQSLRILLGKQG 157 (245)
T ss_dssp C-GGGHHHHHHHHHHHHTTTC
T ss_pred C-HHHHHHHHHHHHHHcCCCC
Confidence 4 3456789999999999999
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.6e-12 Score=121.09 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=82.1
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChh
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
..+||||||+|.++..+++++ +++++ +|+ ..+.+.+.+...+.++.++... |+++ ||+|++..+++||.+..
T Consensus 211 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~ 284 (372)
T 1fp1_D 211 STLVDVGGGSGRNLELIISKYPLIKGIN--FDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEK 284 (372)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHCCCCeEEE--eCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCHHH
Confidence 345999999999999999874 55554 455 4554443332346788888766 7776 99999999999987543
Q ss_pred hHHHHHHHHHhhhCCCC---------C-cch------------------------hhhhHHHHHHhhCCceeeEEe
Q 017839 301 MMEFLFYDVDRVLRGGG---------K-ASD------------------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG---------~-~~~------------------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
...+|+++.|+||||| . ... -.+.|..++++.||+.+++..
T Consensus 285 -~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 285 -CIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred -HHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 3479999999999999 0 000 012467889999999887654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=116.28 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=78.5
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHH--HH---cCCCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAA--AL---RGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a--~~---Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
..+||||||+|.++..++++. .++++ +|+ ..+.+.. .. .+.+.+..++.. .|++ +||+|++..++++
T Consensus 186 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~ 259 (348)
T 3lst_A 186 GTVADVGGGRGGFLLTVLREHPGLQGVL--LDR-AEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRILHN 259 (348)
T ss_dssp EEEEEETCTTSHHHHHHHHHCTTEEEEE--EEC-HHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCGGG
T ss_pred ceEEEECCccCHHHHHHHHHCCCCEEEE--ecC-HHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhccC
Confidence 346999999999999998864 45554 444 2222200 00 123677888874 3444 8999999999999
Q ss_pred ccChhhHHHHHHHHHhhhCCCC-------Ccch-----------------------hhhhHHHHHHhhCCceeeEEe
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG-------KASD-----------------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG-------~~~~-----------------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
|.+.+ ...+|++++|+||||| ..++ -.+.|..++++.||+.++...
T Consensus 260 ~~d~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 260 WGDED-SVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp SCHHH-HHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CCHHH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 97643 3579999999999999 0000 123478899999999887654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-11 Score=103.68 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=80.3
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCC-CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLP-LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LP-F~D~SFDlV~s~~~ 292 (365)
.+||+|||+|.++..++++ + ..++++ |++..+.+.+.++ | .+.++.++++.++ +.+++||+|++...
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGENGRVFGF--DIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTTCEEEEE--CSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 4599999999999999886 2 577764 4556666555432 3 3678888988887 78899999998875
Q ss_pred hhc------ccChhhHHHHHHHHHhhhCCCC-------C----cchhhhhHHHHHHh---hCCceeeEEeecCC
Q 017839 293 VNR------WIPVIMMEFLFYDVDRVLRGGG-------K----ASDLENVYGPLIGK---LGYKKVKWATANKP 346 (365)
Q Consensus 293 L~~------w~d~~~le~aL~Ei~RVLRPGG-------~----~~~l~~~~~~~l~~---~gfk~i~w~v~~K~ 346 (365)
+.. .........++.++.|+||||| . ..+..+.+..+++. .+|...++....+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 176 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQA 176 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCC
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCc
Confidence 511 1112234469999999999999 1 11112223445544 45777776655553
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.4e-11 Score=105.08 Aligned_cols=114 Identities=20% Similarity=0.163 Sum_probs=79.1
Q ss_pred eEEEEcCc-ccHHHHHHhhc-CCeEEEeccCCChhHHHHHHH----cC-CCcEEeccCCC-CCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGA-TGSFAARMKLY-NITILTTTMNLGAPYSEAAAL----RG-LVPLHVPLQQR-LPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCG-tG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~----Rg-~v~~~~g~ae~-LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+||| +|.++..+++. +..|+++++ +..+.+.+.+ .+ .+.++.+++.. .++++++||+|+++-.+.+
T Consensus 58 ~vLDlG~G~~G~~~~~la~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~ 135 (230)
T 3evz_A 58 VALEIGTGHTAMMALMAEKFFNCKVTATEV--DEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYD 135 (230)
T ss_dssp EEEEECCTTTCHHHHHHHHHHCCEEEEEEC--CHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC-
T ss_pred EEEEcCCCHHHHHHHHHHHhcCCEEEEEEC--CHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCcC
Confidence 45999999 99999999988 788887554 4566655443 24 36788888654 3677899999999865432
Q ss_pred ccC----------------hhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceee
Q 017839 296 WIP----------------VIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 296 w~d----------------~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~ 339 (365)
..+ ....+.++.++.|+||||| ......+.+..++++.||+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~ 202 (230)
T 3evz_A 136 KPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKD 202 (230)
T ss_dssp --------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred CccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEE
Confidence 211 1113578999999999999 2222233467788999995443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-11 Score=107.77 Aligned_cols=129 Identities=14% Similarity=0.156 Sum_probs=81.2
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCC-----------CCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLF-----------DGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~-----------D~SFDlV~s~~~ 292 (365)
.|||+|||+|.++..+++++..|++++++...+ ...+.++++|+...+.. .++||+|+|...
T Consensus 28 ~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~ 100 (191)
T 3dou_A 28 AVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAM 100 (191)
T ss_dssp EEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCC
T ss_pred EEEEEeecCCHHHHHHHHcCCcEEEEecccccc-------CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCC
Confidence 459999999999999999888888876653211 12367888888776532 149999999542
Q ss_pred h--------hcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEE
Q 017839 293 V--------NRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTA 357 (365)
Q Consensus 293 L--------~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sa 357 (365)
. .+.......+.++.++.|+||||| ..+.... +...+++ .|++++..--.-.-++..|+|+-+
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~-~~~~l~~-~F~~v~~~kP~asR~~s~E~y~v~ 178 (191)
T 3dou_A 101 AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTND-FIAIWRK-NFSSYKISKPPASRGSSSEIYIMF 178 (191)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHH-HHHHHGG-GEEEEEEECC------CCEEEEEE
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHH-HHHHHHH-hcCEEEEECCCCccCCCceEEEEE
Confidence 2 111111223578999999999999 2333222 4444544 377776542222213689999977
Q ss_pred eeec
Q 017839 358 LLQK 361 (365)
Q Consensus 358 ll~K 361 (365)
.=-|
T Consensus 179 ~~~~ 182 (191)
T 3dou_A 179 FGFK 182 (191)
T ss_dssp EEEC
T ss_pred eeec
Confidence 6544
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=110.59 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=78.1
Q ss_pred eEEEEcCcccHHHHHHhh--cCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCC---CCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKL--YNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLF---DGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae--~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~---D~SFDlV~s~~~ 292 (365)
.+||||||+|.++..|+. .+..|++++ ++..+.+.+.+ .|. +.++.++++.+++. +++||+|+|..+
T Consensus 73 ~vLDiG~G~G~~~~~la~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 150 (240)
T 1xdz_A 73 TICDVGAGAGFPSLPIKICFPHLHVTIVD--SLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (240)
T ss_dssp EEEEECSSSCTTHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred EEEEecCCCCHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc
Confidence 459999999999999985 367777654 45666655543 243 67888888888875 789999999763
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC-----C----cchhhhhHHHHHHhhCCceeeEE
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG-----K----ASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG-----~----~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
. .++.++.++.|+||||| . .+++. .+...++..||+.++..
T Consensus 151 ----~---~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~-~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 151 ----A---RLSVLSELCLPLVKKNGLFVALKAASAEEELN-AGKKAITTLGGELENIH 200 (240)
T ss_dssp ----S---CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHH-HHHHHHHHTTEEEEEEE
T ss_pred ----C---CHHHHHHHHHHhcCCCCEEEEEeCCCchHHHH-HHHHHHHHcCCeEeEEE
Confidence 2 24578999999999999 1 12222 35667889999766543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=114.11 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=77.5
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHcCC---------CcEEe-ccCCCCCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALRGL---------VPLHV-PLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~Rg~---------v~~~~-g~ae~LPF~D~SFDlV~s~~~ 292 (365)
.+||||||||.++..|+++|. .|+++++ +..|.+.+.++.. +.+.. ++....+|.+.+||+|+++.
T Consensus 40 ~VLDiGcGtG~~t~~la~~g~~~V~gvDi--s~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l- 116 (232)
T 3opn_A 40 TCLDIGSSTGGFTDVMLQNGAKLVYALDV--GTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL- 116 (232)
T ss_dssp EEEEETCTTSHHHHHHHHTTCSEEEEECS--SCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG-
T ss_pred EEEEEccCCCHHHHHHHhcCCCEEEEEcC--CHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH-
Confidence 469999999999999999984 7877544 4556555444321 11111 12222234556777766542
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC-----C------c-ch---------------hhhhHHHHHHhhCCceeeEEeecC
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG-----K------A-SD---------------LENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG-----~------~-~~---------------l~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
+.++.|+.|+||||| . . .. ..+.+..++++.||+.+.+....-
T Consensus 117 ----------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi 186 (232)
T 3opn_A 117 ----------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPI 186 (232)
T ss_dssp ----------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSS
T ss_pred ----------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccC
Confidence 248899999999999 0 0 00 012356889999999888876655
Q ss_pred CCCCCCceEEEEeeec
Q 017839 346 PNSKNGEVYLTALLQK 361 (365)
Q Consensus 346 ~d~~~~~~y~sall~K 361 (365)
.....+.-|+. .++|
T Consensus 187 ~g~~gn~e~l~-~~~~ 201 (232)
T 3opn_A 187 KGGAGNVEFLV-HLLK 201 (232)
T ss_dssp CBTTTBCCEEE-EEEE
T ss_pred CCCCCCHHHHH-HHhh
Confidence 44444445553 3344
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.1e-11 Score=127.00 Aligned_cols=91 Identities=14% Similarity=-0.008 Sum_probs=75.0
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHc----------C--CCcEEeccCCCCCCCCCccceeE
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALR----------G--LVPLHVPLQQRLPLFDGVLDVVR 288 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~R----------g--~v~~~~g~ae~LPF~D~SFDlV~ 288 (365)
.|||||||+|.++..|++++ ..|++++ ++..+.+.+.++ + .+.++.+++..+|+.+++||+|+
T Consensus 724 rVLDVGCGTG~lai~LAr~g~p~a~VtGVD--IS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 724 TLVDFGCGSGSLLDSLLDYPTSLQTIIGVD--ISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp EEEEETCSSSHHHHHHTSSCCCCCEEEEEE--SCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred EEEEECCCCCHHHHHHHHhCCCCCeEEEEE--CCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 35999999999999999987 6888754 557777766541 2 26789999999999999999999
Q ss_pred EcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+..+++|+.++ ....++.++.|+||||+
T Consensus 802 ~~eVLeHL~dp-~l~~~L~eI~RvLKPG~ 829 (950)
T 3htx_A 802 CLEVIEHMEED-QACEFGEKVLSLFHPKL 829 (950)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHTTCCSE
T ss_pred EeCchhhCChH-HHHHHHHHHHHHcCCCE
Confidence 99999887643 34568999999999997
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=119.55 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=70.9
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++.|. .|++++++ ++.+.+.+ .|. +.++.++++++|+++++||+|++..+.++
T Consensus 69 ~VLDvGcG~G~~~~~la~~g~~~v~gvD~s---~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 69 VVLDVGSGTGILCMFAAKAGARKVIGIECS---SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 145 (349)
T ss_dssp EEEEESCTTSHHHHHHHHTTCSEEEEEECS---THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred EEEEEeccchHHHHHHHHCCCCEEEEECcH---HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence 469999999999999999875 78876554 35544432 343 67899999999999999999999765433
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
......++.++.++.|+|||||
T Consensus 146 l~~~~~~~~~l~~~~r~LkpgG 167 (349)
T 3q7e_A 146 LFYESMLNTVLHARDKWLAPDG 167 (349)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEE
T ss_pred ccCchhHHHHHHHHHHhCCCCC
Confidence 3333456789999999999999
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=116.00 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=70.2
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc-----------C--CCcEEeccCCCCC----CC--CCc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR-----------G--LVPLHVPLQQRLP----LF--DGV 283 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R-----------g--~v~~~~g~ae~LP----F~--D~S 283 (365)
.|||||||+|.++..+++. +..++++ |++..+.+.+.++ + .+.++.++++.++ |+ +++
T Consensus 37 ~VLDlGcG~G~~~~~l~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 114 (313)
T 3bgv_A 37 TVLDLGCGKGGDLLKWKKGRINKLVCT--DIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC 114 (313)
T ss_dssp EEEEETCTTTTTHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred EEEEECCCCcHHHHHHHhcCCCEEEEE--eCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence 4599999999999999876 4577765 4456676655443 1 3568888988886 74 459
Q ss_pred cceeEEcchhhcc-cChhhHHHHHHHHHhhhCCCC
Q 017839 284 LDVVRCGHAVNRW-IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 284 FDlV~s~~~L~~w-~d~~~le~aL~Ei~RVLRPGG 317 (365)
||+|+|..++++. .+.+....+|.++.|+|||||
T Consensus 115 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG 149 (313)
T 3bgv_A 115 FDICSCQFVCHYSFESYEQADMMLRNACERLSPGG 149 (313)
T ss_dssp EEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred EEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCc
Confidence 9999999999543 344556789999999999999
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-11 Score=116.41 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=69.6
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++.|. .|++++++ . +.+.+.+ .| .+.++.++++.+++++++||+|++..+...
T Consensus 67 ~VLDiGcGtG~ls~~la~~g~~~v~gvD~s--~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 143 (340)
T 2fyt_A 67 VVLDVGCGTGILSMFAAKAGAKKVLGVDQS--E-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 143 (340)
T ss_dssp EEEEETCTTSHHHHHHHHTTCSEEEEEESS--T-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred EEEEeeccCcHHHHHHHHcCCCEEEEEChH--H-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhh
Confidence 469999999999999998874 78876654 3 5554433 23 467888999999999999999998763322
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.....++.++.++.|+|||||
T Consensus 144 l~~~~~~~~~l~~~~~~LkpgG 165 (340)
T 2fyt_A 144 LLFESMLDSVLYAKNKYLAKGG 165 (340)
T ss_dssp BTTTCHHHHHHHHHHHHEEEEE
T ss_pred ccCHHHHHHHHHHHHhhcCCCc
Confidence 3223346679999999999999
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=100.04 Aligned_cols=111 Identities=8% Similarity=0.050 Sum_probs=77.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CC----CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GL----VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~----v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++.+..++++++ +..+.+.+.++ +. +.++.++... ++.+++||+|++...+++
T Consensus 55 ~vLdiG~G~G~~~~~~~~~~~~v~~~D~--~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~ 131 (194)
T 1dus_A 55 DILDLGCGYGVIGIALADEVKSTTMADI--NRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRA 131 (194)
T ss_dssp EEEEETCTTSHHHHHHGGGSSEEEEEES--CHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTT
T ss_pred eEEEeCCCCCHHHHHHHHcCCeEEEEEC--CHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCccc
Confidence 4599999999999999988878877554 45565554432 32 5677777766 456889999999887743
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w 340 (365)
. ......++.++.|+||||| ...+....+.+.+++. |..+.+
T Consensus 132 -~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-~~~~~~ 179 (194)
T 1dus_A 132 -G-KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-FGNVET 179 (194)
T ss_dssp -C-HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-HSCCEE
T ss_pred -c-hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH-hcceEE
Confidence 2 2345679999999999999 1122222355666666 555554
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=111.12 Aligned_cols=91 Identities=12% Similarity=0.027 Sum_probs=65.2
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCC----hhHHHHHHHc----C---CCcEEecc---CCCCCCCCCccce
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLG----APYSEAAALR----G---LVPLHVPL---QQRLPLFDGVLDV 286 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~----~~~~e~a~~R----g---~v~~~~g~---ae~LPF~D~SFDl 286 (365)
.|||||||+|.++..++++ | ..+++++++.. ..+.+.+.++ + .+.+..++ ...+||++++||+
T Consensus 46 ~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~ 125 (275)
T 3bkx_A 46 KILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDR 125 (275)
T ss_dssp EEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCSE
T ss_pred EEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEEE
Confidence 3599999999999999987 4 78887665421 0144444332 2 36677777 6788999999999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|++..+++|+.+.. .++..+.++++|||
T Consensus 126 v~~~~~l~~~~~~~---~~~~~~~~l~~~gG 153 (275)
T 3bkx_A 126 VVLAHSLWYFASAN---ALALLFKNMAAVCD 153 (275)
T ss_dssp EEEESCGGGSSCHH---HHHHHHHHHTTTCS
T ss_pred EEEccchhhCCCHH---HHHHHHHHHhCCCC
Confidence 99999998876542 44555555555699
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-11 Score=116.04 Aligned_cols=113 Identities=25% Similarity=0.241 Sum_probs=81.6
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..++++ +..+++ +|+ ..+.+.+.+ .| .+.++.++... +++.+ ||+|++..+++
T Consensus 185 ~vlDvG~G~G~~~~~l~~~~~~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~vl~ 259 (374)
T 1qzz_A 185 HVLDVGGGNGGMLAAIALRAPHLRGTL--VEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-ADVVLLSFVLL 259 (374)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EEEEEEESCGG
T ss_pred EEEEECCCcCHHHHHHHHHCCCCEEEE--EeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CCEEEEecccc
Confidence 4599999999999999987 466665 455 566655543 23 46788888654 44443 99999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC------C--c-ch-----------------------hhhhHHHHHHhhCCceeeEEe
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG------K--A-SD-----------------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG------~--~-~~-----------------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
+|.+. ....+++++.|+||||| . . ++ -.+.|..++++.||+.++...
T Consensus 260 ~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~ 338 (374)
T 1qzz_A 260 NWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERT 338 (374)
T ss_dssp GSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred CCCHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 98754 33479999999999999 2 1 11 112466789999999887653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.4e-11 Score=106.79 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=75.7
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChh----HHHHHHHcCCCcEEeccCCC---CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAP----YSEAAALRGLVPLHVPLQQR---LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~----~~e~a~~Rg~v~~~~g~ae~---LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..|+++ | ..|+++ |++.. +.+.+..+..+.++.+++.. +|+.+++||+|++...
T Consensus 80 ~vLDlG~G~G~~~~~la~~~g~~~~v~gv--D~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~- 156 (233)
T 2ipx_A 80 KVLYLGAASGTTVSHVSDIVGPDGLVYAV--EFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA- 156 (233)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEE--CCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC-
T ss_pred EEEEEcccCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC-
Confidence 4599999999999999986 2 577764 45443 33444444556788888776 6778899999999544
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-----Ccc-------hhhhhH---HHHHHhhCCceeeEE
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-----KAS-------DLENVY---GPLIGKLGYKKVKWA 341 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-----~~~-------~l~~~~---~~~l~~~gfk~i~w~ 341 (365)
.......++.++.|+||||| ... .....+ ..++++.||+.++..
T Consensus 157 ----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 215 (233)
T 2ipx_A 157 ----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQL 215 (233)
T ss_dssp ----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEE
T ss_pred ----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence 11223456889999999999 111 011111 467788999887643
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=106.58 Aligned_cols=115 Identities=12% Similarity=0.100 Sum_probs=79.1
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCC--CCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLP--LFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LP--F~D~SFDlV~s~~~L 293 (365)
.|||+|||+|.++..+++++. .|+++ |++..+.+.+.++ + .+.++.+++..++ +++++||+|+++-.+
T Consensus 52 ~vLDlG~G~G~~~~~la~~~~~~v~gv--Di~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy 129 (259)
T 3lpm_A 52 KIIDLCSGNGIIPLLLSTRTKAKIVGV--EIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY 129 (259)
T ss_dssp EEEETTCTTTHHHHHHHTTCCCEEEEE--CCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred EEEEcCCchhHHHHHHHHhcCCcEEEE--ECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence 459999999999999998864 77764 4456666555432 3 3678888887775 678999999996432
Q ss_pred hcc-----------------cChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEE
Q 017839 294 NRW-----------------IPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 294 ~~w-----------------~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
... .....++.++.++.|+||||| ....+. .+...+++.||...+..
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 199 (259)
T 3lpm_A 130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLL-DIIDIMRKYRLEPKRIQ 199 (259)
T ss_dssp -----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHH-HHHHHHHHTTEEEEEEE
T ss_pred CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHH-HHHHHHHHCCCceEEEE
Confidence 111 011235679999999999999 223333 36667888888765544
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=112.17 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=81.0
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..+++++ +.+++ +|+ ..+.+.+.+ .| .+.++.++... +++++ ||+|++..+++
T Consensus 186 ~vLDvG~G~G~~~~~l~~~~~~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~vl~ 260 (360)
T 1tw3_A 186 HVLDVGGGKGGFAAAIARRAPHVSATV--LEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRK-ADAIILSFVLL 260 (360)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSC-EEEEEEESCGG
T ss_pred EEEEeCCcCcHHHHHHHHhCCCCEEEE--ecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCC-ccEEEEccccc
Confidence 45999999999999998874 56665 444 455554443 23 36788887654 44443 99999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC-------C-cchh-----------------------hhhHHHHHHhhCCceeeEEe
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG-------K-ASDL-----------------------ENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG-------~-~~~l-----------------------~~~~~~~l~~~gfk~i~w~v 342 (365)
+|.+. ....+++++.|+||||| . .++. .+.|..++++.||+.+++..
T Consensus 261 ~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 261 NWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp GSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCHH-HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 98754 33479999999999999 2 1210 12467889999999887653
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=111.76 Aligned_cols=113 Identities=16% Similarity=0.247 Sum_probs=82.4
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc------CCCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR------GLVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R------g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
+.+||||||+|.++..++++. .+++. .|+ +.+.+.+.++ +.+.++.+|....|+++ +|+|++.++||
T Consensus 181 ~~v~DvGgG~G~~~~~l~~~~p~~~~~~--~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~--~D~~~~~~vlh 255 (353)
T 4a6d_A 181 PLMCDLGGGAGALAKECMSLYPGCKITV--FDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE--ADLYILARVLH 255 (353)
T ss_dssp SEEEEETCTTSHHHHHHHHHCSSCEEEE--EEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCC--CSEEEEESSGG
T ss_pred CeEEeeCCCCCHHHHHHHHhCCCceeEe--ccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCC--ceEEEeeeecc
Confidence 456999999999999999874 55443 443 4455544432 34778888876656654 69999999999
Q ss_pred cccChhhHHHHHHHHHhhhCCCC--------Ccc----------------------h-hhhhHHHHHHhhCCceeeEE
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG--------KAS----------------------D-LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG--------~~~----------------------~-l~~~~~~~l~~~gfk~i~w~ 341 (365)
+|.|++ ...+|++++|+|+||| ..+ + -.+.|..++++.||+.++..
T Consensus 256 ~~~d~~-~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~ 332 (353)
T 4a6d_A 256 DWADGK-CSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK 332 (353)
T ss_dssp GSCHHH-HHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred cCCHHH-HHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 998654 4568999999999999 000 0 02347889999999988753
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.9e-11 Score=107.54 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=60.5
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhH----HHHHHHcCCCcEEeccCCC----CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPY----SEAAALRGLVPLHVPLQQR----LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~----~e~a~~Rg~v~~~~g~ae~----LPF~D~SFDlV~s~~~L 293 (365)
.|||||||||.++..+++.. ..|+++ |+++.+ .+.+..+..+.++.+++.. .|+. ++||+|++.. .
T Consensus 60 ~VLDlGcGtG~~~~~la~~~~~~~V~gv--D~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~-~ 135 (210)
T 1nt2_A 60 RVLYLGAASGTTVSHLADIVDEGIIYAV--EYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQDI-A 135 (210)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTSEEEEE--CCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEECC-C
T ss_pred EEEEECCcCCHHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEec-c
Confidence 35999999999999998763 577764 555554 3334444445667777766 3665 8999999973 2
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+ ...+.++.|++|+|||||
T Consensus 136 ~~----~~~~~~l~~~~r~LkpgG 155 (210)
T 1nt2_A 136 QK----NQIEILKANAEFFLKEKG 155 (210)
T ss_dssp ST----THHHHHHHHHHHHEEEEE
T ss_pred Ch----hHHHHHHHHHHHHhCCCC
Confidence 11 233456899999999999
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.4e-11 Score=114.28 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=81.5
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
.+||||||+|.++..++++ +..+++ +|+ ..+.+.+.+...+.+..++... |+++ ||+|++..+++||.+. .
T Consensus 191 ~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d~-~ 263 (352)
T 1fp2_A 191 SIVDVGGGTGTTAKIICETFPKLKCIV--FDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTDK-D 263 (352)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCHH-H
T ss_pred eEEEeCCCccHHHHHHHHHCCCCeEEE--eeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCHH-H
Confidence 4599999999999999986 466665 455 4554444333336788888755 6664 9999999999999754 3
Q ss_pred HHHHHHHHHhhhCC---CC---------C--cc-----h-----------------hhhhHHHHHHhhCCceeeEEe
Q 017839 302 MEFLFYDVDRVLRG---GG---------K--AS-----D-----------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 302 le~aL~Ei~RVLRP---GG---------~--~~-----~-----------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
...+|+++.|+||| || . .. . -.+.|..++++.||+.++...
T Consensus 264 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 264 CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 34799999999999 99 1 10 0 013477899999999876543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-11 Score=114.73 Aligned_cols=91 Identities=21% Similarity=0.206 Sum_probs=70.2
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++.|. .|++++++ ++.+.+.+ .| .+.++.++++.+++++++||+|++....++
T Consensus 41 ~VLDiGcGtG~ls~~la~~g~~~v~~vD~s---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 117 (328)
T 1g6q_1 41 IVLDVGCGTGILSMFAAKHGAKHVIGVDMS---SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp EEEEETCTTSHHHHHHHHTCCSEEEEEESS---THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred EEEEecCccHHHHHHHHHCCCCEEEEEChH---HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence 469999999999999998875 78876654 35544432 33 367888999999999999999999865444
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.....++.++.++.|+|||||
T Consensus 118 l~~~~~~~~~l~~~~~~LkpgG 139 (328)
T 1g6q_1 118 LLYESMMDTVLYARDHYLVEGG 139 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEE
T ss_pred cccHHHHHHHHHHHHhhcCCCe
Confidence 4333456679999999999999
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-11 Score=113.39 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=70.1
Q ss_pred CCceEEEEcCcccH----HHHHHhhc------CCeEEEeccCCChhHHHHHHHc--------------------------
Q 017839 221 VIRLGIDVGGATGS----FAARMKLY------NITILTTTMNLGAPYSEAAALR-------------------------- 264 (365)
Q Consensus 221 ~iRi~LDIGCGtG~----faa~Lae~------gv~Vv~~~ldl~~~~~e~a~~R-------------------------- 264 (365)
.+|| ||+|||||. +|..|++. +..|+++++ +..+.+.|.+.
T Consensus 106 ~~rI-ld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDi--s~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~ 182 (274)
T 1af7_A 106 EYRV-WSAAASTGEEPYSIAITLADALGMAPGRWKVFASDI--DTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 182 (274)
T ss_dssp CEEE-EESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEES--CHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CcEE-EEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEEC--CHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCC
Confidence 4565 999999998 67777764 357777554 56777766542
Q ss_pred -----------CCCcEEeccCCCCCCC-CCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 265 -----------GLVPLHVPLQQRLPLF-DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 265 -----------g~v~~~~g~ae~LPF~-D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+.|..++....||+ ++.||+|+|..+++++. ++..+.++.+++++|||||
T Consensus 183 ~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG 246 (274)
T 1af7_A 183 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDG 246 (274)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEE
T ss_pred CCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCc
Confidence 1255667777777776 68999999999997764 4456789999999999999
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=107.73 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=82.8
Q ss_pred CCCceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHH----cCCCcEEeccC---CCCCCCCCccceeEE
Q 017839 220 SVIRLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAAL----RGLVPLHVPLQ---QRLPLFDGVLDVVRC 289 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~----Rg~v~~~~g~a---e~LPF~D~SFDlV~s 289 (365)
|. .|||+|||+|.++..+++. | ..|++ +|++..|.+.+.+ ++.+..+.+++ +..|+.+++||+|++
T Consensus 78 G~--~VldlG~G~G~~~~~la~~VG~~G~V~a--vD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~ 153 (233)
T 4df3_A 78 GD--RILYLGIASGTTASHMSDIIGPRGRIYG--VEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYA 153 (233)
T ss_dssp TC--EEEEETCTTSHHHHHHHHHHCTTCEEEE--EECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred CC--EEEEecCcCCHHHHHHHHHhCCCceEEE--EeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEE
Confidence 64 4599999999999999985 4 46665 4556777765543 23344555543 457889999999987
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC----C-----------cchhhhhHHHHHHhhCCceeeEEeecCCCC-CCCce
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG----K-----------ASDLENVYGPLIGKLGYKKVKWATANKPNS-KNGEV 353 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG----~-----------~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~-~~~~~ 353 (365)
.... ++ +.+.++.|+.|+||||| . .+..-+.....++..||+.+.-.. +++ +++..
T Consensus 154 d~~~-~~----~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~---L~pf~~~H~ 225 (233)
T 4df3_A 154 DVAQ-PE----QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVH---LDPFDRDHA 225 (233)
T ss_dssp CCCC-TT----HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEE---CTTTSTTEE
T ss_pred eccC-Ch----hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEc---cCCCCCceE
Confidence 5432 22 24579999999999999 0 111111234567788998765332 222 34555
Q ss_pred EEEEeee
Q 017839 354 YLTALLQ 360 (365)
Q Consensus 354 y~sall~ 360 (365)
.+.|+++
T Consensus 226 lv~~~~r 232 (233)
T 4df3_A 226 MIYAVMR 232 (233)
T ss_dssp EEEECC-
T ss_pred EEEEEEe
Confidence 5556654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-11 Score=111.99 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=66.7
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCC-C--CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRL-P--LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~L-P--F~D~SFDlV~s~~~ 292 (365)
++||||||+|.++..|++. +..|+++ |++..+.+.+.+ .|+ +.++.+++..+ + |++++||.|++.+.
T Consensus 37 ~vLDiGcG~G~~~~~lA~~~p~~~v~gi--D~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~ 114 (218)
T 3dxy_A 37 VTLEIGFGMGASLVAMAKDRPEQDFLGI--EVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP 114 (218)
T ss_dssp EEEEESCTTCHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred eEEEEeeeChHHHHHHHHHCCCCeEEEE--EecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence 5699999999999999986 4567764 555666655433 343 66788888774 4 88999999999864
Q ss_pred hhcccChhhH------HHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVIMM------EFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~l------e~aL~Ei~RVLRPGG 317 (365)
. .|...... ..++.++.|+|||||
T Consensus 115 ~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG 144 (218)
T 3dxy_A 115 D-PWHKARHNKRRIVQVPFAELVKSKLQLGG 144 (218)
T ss_dssp C-CCCSGGGGGGSSCSHHHHHHHHHHEEEEE
T ss_pred C-CccchhhhhhhhhhHHHHHHHHHHcCCCc
Confidence 3 45432211 148999999999999
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-11 Score=111.72 Aligned_cols=82 Identities=26% Similarity=0.290 Sum_probs=67.4
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEcchhhcccChh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
.+||||||+|.++..+++. +..++++ |++..+.+.+.+++ .+.+..++++.+||++++||+|++..+.
T Consensus 88 ~vLdiG~G~G~~~~~l~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~------- 158 (269)
T 1p91_A 88 AVLDIGCGEGYYTHAFADALPEITTFGL--DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP------- 158 (269)
T ss_dssp EEEEETCTTSTTHHHHHHTCTTSEEEEE--ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-------
T ss_pred EEEEECCCCCHHHHHHHHhCCCCeEEEE--eCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-------
Confidence 4599999999999999987 6787765 45577777777664 3678889999999999999999986542
Q ss_pred hHHHHHHHHHhhhCCCC
Q 017839 301 MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG 317 (365)
.++.|+.|+|||||
T Consensus 159 ---~~l~~~~~~L~pgG 172 (269)
T 1p91_A 159 ---CKAEELARVVKPGG 172 (269)
T ss_dssp ---CCHHHHHHHEEEEE
T ss_pred ---hhHHHHHHhcCCCc
Confidence 25789999999999
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.4e-11 Score=109.34 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=64.5
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----------cC--CCcEEeccCCC-CC--CCCCccce
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----------RG--LVPLHVPLQQR-LP--LFDGVLDV 286 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----------Rg--~v~~~~g~ae~-LP--F~D~SFDl 286 (365)
.+||||||+|.++..|++. +..++++ |++..+.+.+.+ .+ .+.++.+++.. +| |++++||.
T Consensus 49 ~vLDiGcG~G~~~~~la~~~p~~~v~Gi--Dis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 49 EFADIGCGYGGLLVELSPLFPDTLILGL--EIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp EEEEETCTTCHHHHHHGGGSTTSEEEEE--ESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred eEEEEccCCcHHHHHHHHHCCCCeEEEE--ECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 4699999999999999987 4677765 455667655432 12 25688888886 88 89999999
Q ss_pred eEEcchhhcccChh------hHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVI------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~------~le~aL~Ei~RVLRPGG 317 (365)
|++.+.- .|.... ....++.++.|+|||||
T Consensus 127 v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG 162 (235)
T 3ckk_A 127 MFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGG 162 (235)
T ss_dssp EEEESCC------------CCCHHHHHHHHHHEEEEE
T ss_pred EEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCC
Confidence 9876532 342100 01258999999999999
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-10 Score=106.94 Aligned_cols=134 Identities=14% Similarity=0.093 Sum_probs=87.7
Q ss_pred cCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----CC--CcEEec
Q 017839 201 KSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----GL--VPLHVP 272 (365)
Q Consensus 201 ~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g 272 (365)
+..++..++.+++..+ . ...+ +||+|||+|.++..+++. +..++++ |++..+.+.+.++ |. +.++.+
T Consensus 92 r~~te~l~~~~l~~~~-~-~~~~-vLDlG~GsG~~~~~la~~~~~~~v~~v--D~s~~~l~~a~~n~~~~~~~~v~~~~~ 166 (276)
T 2b3t_A 92 RPDTECLVEQALARLP-E-QPCR-ILDLGTGTGAIALALASERPDCEIIAV--DRMPDAVSLAQRNAQHLAIKNIHILQS 166 (276)
T ss_dssp CTTHHHHHHHHHHHSC-S-SCCE-EEEETCTTSHHHHHHHHHCTTSEEEEE--CSSHHHHHHHHHHHHHHTCCSEEEECC
T ss_pred CchHHHHHHHHHHhcc-c-CCCE-EEEecCCccHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCceEEEEc
Confidence 3345556666665432 1 2234 599999999999999865 5677765 4456666555432 42 667778
Q ss_pred cCCCCCCCCCccceeEEcc-------------hhhcccCh---------hhHHHHHHHHHhhhCCCC-----Ccchhhhh
Q 017839 273 LQQRLPLFDGVLDVVRCGH-------------AVNRWIPV---------IMMEFLFYDVDRVLRGGG-----KASDLENV 325 (365)
Q Consensus 273 ~ae~LPF~D~SFDlV~s~~-------------~L~~w~d~---------~~le~aL~Ei~RVLRPGG-----~~~~l~~~ 325 (365)
+... ++++++||+|+++- +++|.+.. ...+.++.++.|+||||| ......+.
T Consensus 167 d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 245 (276)
T 2b3t_A 167 DWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEA 245 (276)
T ss_dssp STTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHH
T ss_pred chhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHH
Confidence 7655 35578999999983 33222110 234678999999999999 22222334
Q ss_pred HHHHHHhhCCceeeE
Q 017839 326 YGPLIGKLGYKKVKW 340 (365)
Q Consensus 326 ~~~~l~~~gfk~i~w 340 (365)
+..++++.||+.+..
T Consensus 246 ~~~~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 246 VRQAFILAGYHDVET 260 (276)
T ss_dssp HHHHHHHTTCTTCCE
T ss_pred HHHHHHHCCCcEEEE
Confidence 777899999987653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.2e-12 Score=109.59 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=75.9
Q ss_pred ccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCC
Q 017839 204 LDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQR 276 (365)
Q Consensus 204 ~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~ 276 (365)
++..++.+++..+...... .+||+|||+|.++..++++ +..+++++++ ..+.+.+.++ + .+.++.+++..
T Consensus 14 ~~~~~~~~~~~l~~~~~~~-~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~d~~~ 90 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGT-RVIDVGTGSGCIAVSIALACPGVSVTAVDLS--MDALAVARRNAERFGAVVDWAAADGIE 90 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTE-EEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCC-EEEEecCCHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHHHHhCCceEEEEcchHh
Confidence 3445566655432101223 4599999999999999988 4577775554 4455444332 2 25566677666
Q ss_pred CCCCC-----CccceeEEcchhh------cccChh-----------------hHHHHHHHHHhhhCCCC------Ccchh
Q 017839 277 LPLFD-----GVLDVVRCGHAVN------RWIPVI-----------------MMEFLFYDVDRVLRGGG------KASDL 322 (365)
Q Consensus 277 LPF~D-----~SFDlV~s~~~L~------~w~d~~-----------------~le~aL~Ei~RVLRPGG------~~~~l 322 (365)
++++ ++||+|+++-.++ ++.+.. ..+.++.++.|+||||| .....
T Consensus 91 -~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 169 (215)
T 4dzr_A 91 -WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQ 169 (215)
T ss_dssp -HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSC
T ss_pred -hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCcc
Confidence 7776 9999999964331 111110 01578899999999999 11222
Q ss_pred hhhHHHHHH--hhCCceee
Q 017839 323 ENVYGPLIG--KLGYKKVK 339 (365)
Q Consensus 323 ~~~~~~~l~--~~gfk~i~ 339 (365)
.+.+..+++ +.||..+.
T Consensus 170 ~~~~~~~l~~~~~gf~~~~ 188 (215)
T 4dzr_A 170 ADEVARLFAPWRERGFRVR 188 (215)
T ss_dssp HHHHHHHTGGGGGGTEECC
T ss_pred HHHHHHHHHHhhcCCceEE
Confidence 334667888 88887664
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=105.87 Aligned_cols=104 Identities=9% Similarity=0.000 Sum_probs=76.3
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc-----C--CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR-----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R-----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..+++. +..++++++ +..+.+.+.++ | .+.+..+++..+|+++++||+|++.
T Consensus 99 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~--~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~--- 173 (258)
T 2pwy_A 99 RVLEAGTGSGGLTLFLARAVGEKGLVESYEA--RPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD--- 173 (258)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE---
T ss_pred EEEEECCCcCHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC---
Confidence 4599999999999999987 567776544 46666555443 4 3667888888889999999999983
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
+.+. ..++.++.|+||||| ..++..+ ....+++.||..+
T Consensus 174 --~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~-~~~~l~~~gf~~~ 219 (258)
T 2pwy_A 174 --LMEP---WKVLEKAALALKPDRFLVAYLPNITQVLE-LVRAAEAHPFRLE 219 (258)
T ss_dssp --SSCG---GGGHHHHHHHEEEEEEEEEEESCHHHHHH-HHHHHTTTTEEEE
T ss_pred --CcCH---HHHHHHHHHhCCCCCEEEEEeCCHHHHHH-HHHHHHHCCCceE
Confidence 3332 258899999999999 2223333 5566778898753
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.4e-11 Score=115.30 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=69.5
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHH----HcC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..++++|. .|++++++ ++.+.+. ..| .+.++.++++.++++ ++||+|++..+.+.
T Consensus 66 ~VLDlGcGtG~ls~~la~~g~~~V~gvD~s---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~ 141 (376)
T 3r0q_C 66 TVLDVGTGSGILAIWSAQAGARKVYAVEAT---KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYF 141 (376)
T ss_dssp EEEEESCTTTHHHHHHHHTTCSEEEEEESS---TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTT
T ss_pred EEEEeccCcCHHHHHHHhcCCCEEEEEccH---HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhhc
Confidence 469999999999999999886 78876554 4544443 233 267889999999987 89999999665544
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
......++.++.+++|+|||||
T Consensus 142 l~~e~~~~~~l~~~~~~LkpgG 163 (376)
T 3r0q_C 142 LLRESMFDSVISARDRWLKPTG 163 (376)
T ss_dssp BTTTCTHHHHHHHHHHHEEEEE
T ss_pred ccchHHHHHHHHHHHhhCCCCe
Confidence 4333456789999999999999
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4.3e-10 Score=101.94 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=75.9
Q ss_pred eEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHHHHc----CCCcEEeccCCC----CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQR----LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~----LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..+++. + ..|++++ ++..+.+.+.++ ..+.++.+++.. +|+. ++||+|++
T Consensus 77 ~VLDlGcG~G~~~~~la~~~~~~~v~gvD--~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~---- 149 (230)
T 1fbn_A 77 KILYLGASAGTTPSHVADIADKGIVYAIE--YAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE---- 149 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTSEEEEEE--SCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE----
T ss_pred EEEEEcccCCHHHHHHHHHcCCcEEEEEE--CCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE----
Confidence 4599999999999999987 4 6777654 456666555432 235677888887 8887 89999992
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC---C----c--ch-------hhhhHHHHHHhhCCceeeEE
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG---K----A--SD-------LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG---~----~--~~-------l~~~~~~~l~~~gfk~i~w~ 341 (365)
+..+....+.++.++.|+||||| . . +. ..+.+. +++..||+.++..
T Consensus 150 -~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 150 -DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp -CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred -ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence 33333233567999999999999 1 0 00 113344 7888999877654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-11 Score=125.58 Aligned_cols=132 Identities=12% Similarity=0.088 Sum_probs=90.1
Q ss_pred CCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCC--CCCCCccceeEEcc
Q 017839 220 SVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRL--PLFDGVLDVVRCGH 291 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~L--PF~D~SFDlV~s~~ 291 (365)
.++|| ||||||+|.++..|+++|++|+|+ |+++.+.+.|. +.|. +.+..+++++| ++.+++||+|+|..
T Consensus 66 ~~~~v-LDvGCG~G~~~~~la~~ga~V~gi--D~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNV-LDLGCAQGFFSLSLASKGATIVGI--DFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEE-EEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeE-EEECCCCcHHHHHHHhCCCEEEEE--CCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 34665 999999999999999999999875 45566665543 3453 67888999988 68899999999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC-------Cc-chh-------hhhHHHHHHhhCCceeeEEeecCCCCCCCceEE
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG-------KA-SDL-------ENVYGPLIGKLGYKKVKWATANKPNSKNGEVYL 355 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG-------~~-~~l-------~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~ 355 (365)
+++|..++... ..+..+.+.|+++| .. +.. ...|..+++-.+|.++-=..+..+......+|+
T Consensus 143 ~~ehv~~~~~~-~~~~~~~~tl~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 220 (569)
T 4azs_A 143 VFHHIVHLHGI-DEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQPDDPRELIEQCAFYRLIGEFDTHLSPVPRPMYL 220 (569)
T ss_dssp CHHHHHHHHCH-HHHHHHHHHHHHHSSEEEEECCCTTSSSGGGGGSCSSGGGGTTTSSEEEEEEEECCSSSSCCEEEEE
T ss_pred chhcCCCHHHH-HHHHHHHHHhccccceeeEEeccccccccccCCCCccHHHhcCHHHHHHHHHHcCCccccCCCceee
Confidence 99998765433 34567888899988 11 110 113555666666655433344444433444554
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=99.00 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=73.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCC-CccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFD-GVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D-~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++.+..++++++ +..+.+.+.+ .+ .+.+..++... ++++ +.||+|++..++++
T Consensus 36 ~vldiG~G~G~~~~~l~~~~~~v~~~D~--~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~ 112 (192)
T 1l3i_A 36 VAVDVGCGTGGVTLELAGRVRRVYAIDR--NPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGSGGE 112 (192)
T ss_dssp EEEEESCTTSHHHHHHHTTSSEEEEEES--CHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCCTTC
T ss_pred EEEEECCCCCHHHHHHHHhcCEEEEEEC--CHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCchHH
Confidence 4599999999999999988877776544 4556555543 22 35667776555 3344 68999999887643
Q ss_pred ccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCc
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYK 336 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk 336 (365)
+..++.++.|+||||| ...+....+..++++.||+
T Consensus 113 ------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 153 (192)
T 1l3i_A 113 ------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFD 153 (192)
T ss_dssp ------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCC
T ss_pred ------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCc
Confidence 2468999999999999 1122223366788999993
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=112.95 Aligned_cols=84 Identities=12% Similarity=0.159 Sum_probs=63.2
Q ss_pred eEEEEcCcccHHHHHH-hh-cCCeEEEeccCCChhHHHHHHHc----CC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARM-KL-YNITILTTTMNLGAPYSEAAALR----GL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~L-ae-~gv~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.+++.+ ++ .|..|+++++ ++.+.+.|+++ |. +.++.+++..+| +++||+|++....
T Consensus 125 rVLDIGcG~G~~ta~~lA~~~ga~V~gIDi--s~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~~-- 198 (298)
T 3fpf_A 125 RAVFIGGGPLPLTGILLSHVYGMRVNVVEI--EPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAALA-- 198 (298)
T ss_dssp EEEEECCCSSCHHHHHHHHTTCCEEEEEES--SHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTTC--
T ss_pred EEEEECCCccHHHHHHHHHccCCEEEEEEC--CHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCCc--
Confidence 3599999999876554 44 3788887554 56777666543 43 678889988876 8999999986542
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+ +.+.++.|+.|+|||||
T Consensus 199 --~--d~~~~l~el~r~LkPGG 216 (298)
T 3fpf_A 199 --E--PKRRVFRNIHRYVDTET 216 (298)
T ss_dssp --S--CHHHHHHHHHHHCCTTC
T ss_pred --c--CHHHHHHHHHHHcCCCc
Confidence 2 34579999999999999
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=107.48 Aligned_cols=108 Identities=15% Similarity=0.084 Sum_probs=78.5
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCC---CCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLF---DGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~---D~SFDlV~s~~~ 292 (365)
.+||||||+|..+..|+.. +..|+++ |.+..+.+++.+ .|+ +.++.++++.+++. +++||+|+|..+
T Consensus 83 ~vLDiG~G~G~~~i~la~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~ 160 (249)
T 3g89_A 83 RVLDLGTGAGFPGLPLKIVRPELELVLV--DATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV 160 (249)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS
T ss_pred EEEEEcCCCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc
Confidence 4599999999999999875 5677764 445666655543 243 67888898888764 589999999653
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC-----C----cchhhhhHHHHHHhhCCceeeEE
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG-----K----ASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG-----~----~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
- .+..++.++.|+||||| . .+++. .....++.+||+..+..
T Consensus 161 ~-------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~-~~~~~l~~~G~~~~~~~ 210 (249)
T 3g89_A 161 A-------PLCVLSELLLPFLEVGGAAVAMKGPRVEEELA-PLPPALERLGGRLGEVL 210 (249)
T ss_dssp C-------CHHHHHHHHGGGEEEEEEEEEEECSCCHHHHT-THHHHHHHHTEEEEEEE
T ss_pred C-------CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHH-HHHHHHHHcCCeEEEEE
Confidence 2 23468999999999999 1 23333 36778899999876544
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-10 Score=95.23 Aligned_cols=103 Identities=11% Similarity=-0.006 Sum_probs=74.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||+|||+|.++..+++.+..++++++ +..+.+.+.++ | .+.++.++... ++++++||+|++..+ .
T Consensus 38 ~vLdiG~G~G~~~~~l~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~-~--- 110 (183)
T 2yxd_A 38 VVVDVGCGSGGMTVEIAKRCKFVYAIDY--LDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT-K--- 110 (183)
T ss_dssp EEEEESCCCSHHHHHHHTTSSEEEEEEC--SHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-S---
T ss_pred EEEEeCCCCCHHHHHHHhcCCeEEEEeC--CHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-c---
Confidence 4599999999999999987778877554 46666555433 3 35677888766 788899999999887 1
Q ss_pred ChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCcee
Q 017839 298 PVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i 338 (365)
..+.++.++.|+ ||| ...+........+++.||+..
T Consensus 111 ---~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 152 (183)
T 2yxd_A 111 ---NIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVD 152 (183)
T ss_dssp ---CHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred ---cHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEE
Confidence 245789999999 999 122222236678899997543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=108.62 Aligned_cols=93 Identities=6% Similarity=-0.040 Sum_probs=69.5
Q ss_pred CceEEEEcCcc---cHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCC-----------CCC
Q 017839 222 IRLGIDVGGAT---GSFAARMKLY--NITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLP-----------LFD 281 (365)
Q Consensus 222 iRi~LDIGCGt---G~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LP-----------F~D 281 (365)
.+.+||||||+ |.++..+.+. +.+|++++ ++..|.+.++++ +.+.++.++....+ |+.
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD--~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVD--IDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEE--SSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEE--CChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 35569999999 9988777654 57887654 456777766543 34678888875421 333
Q ss_pred CccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 282 GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 282 ~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++||+|++..+++|+.+. ....+|+++.|+|||||
T Consensus 156 ~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG 190 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGS 190 (274)
T ss_dssp TSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTC
T ss_pred CCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCc
Confidence 589999999999777654 46789999999999999
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-11 Score=111.79 Aligned_cols=88 Identities=13% Similarity=0.001 Sum_probs=68.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.|||+|||+|.++..+++.|..|+++++ +..+.+.+.+ .| .+.++.+++..++ ++++||+|++...+++.
T Consensus 81 ~vLD~gcG~G~~~~~la~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~ 157 (241)
T 3gdh_A 81 VVVDAFCGVGGNTIQFALTGMRVIAIDI--DPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGGP 157 (241)
T ss_dssp EEEETTCTTSHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSSG
T ss_pred EEEECccccCHHHHHHHHcCCEEEEEEC--CHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCCc
Confidence 3599999999999999999988887554 4666655543 24 3678888888877 78899999999888654
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+.. ..+.++.|+|||||
T Consensus 158 ~~~~---~~~~~~~~~L~pgG 175 (241)
T 3gdh_A 158 DYAT---AETFDIRTMMSPDG 175 (241)
T ss_dssp GGGG---SSSBCTTTSCSSCH
T ss_pred chhh---hHHHHHHhhcCCcc
Confidence 4322 36789999999999
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-10 Score=106.50 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=78.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||+|||+|.++..+++.|..|+++++| ..+.+.+.+ .+. +.+..++... ++++++||+|+++...++
T Consensus 123 ~VLDiGcG~G~l~~~la~~g~~v~gvDi~--~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~~--- 196 (254)
T 2nxc_A 123 KVLDLGTGSGVLAIAAEKLGGKALGVDID--PMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL--- 196 (254)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEESC--GGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH---
T ss_pred EEEEecCCCcHHHHHHHHhCCeEEEEECC--HHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHHH---
Confidence 45999999999999999988888776554 555554443 343 6677776554 256789999999765432
Q ss_pred hhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEE
Q 017839 299 VIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
+..++.++.|+||||| ......+.+..++++.||+.+...
T Consensus 197 ---~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 197 ---HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred ---HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEe
Confidence 3468999999999999 122223447788999999987643
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=9.6e-11 Score=107.37 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=72.7
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHH---HH----cCC--CcEEeccCCCCCCC-CCccceeEEc
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAA---AL----RGL--VPLHVPLQQRLPLF-DGVLDVVRCG 290 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a---~~----Rg~--v~~~~g~ae~LPF~-D~SFDlV~s~ 290 (365)
..+||||||+|.++..|+++ +..|++++++. ..|.+.+ ++ .|. +.+..++++.+|.. ++.||.|++.
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~-~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~ 104 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVK-ENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISIL 104 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTEEEEEECSCC-GGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCH-HHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEe
Confidence 35699999999999999854 56777654431 5565543 22 233 56788899999742 2455555554
Q ss_pred chh----hcccChhhHHHHHHHHHhhhCCCC---C----c---chh-----------hh-----hHHHHHHhhCCceeeE
Q 017839 291 HAV----NRWIPVIMMEFLFYDVDRVLRGGG---K----A---SDL-----------EN-----VYGPLIGKLGYKKVKW 340 (365)
Q Consensus 291 ~~L----~~w~d~~~le~aL~Ei~RVLRPGG---~----~---~~l-----------~~-----~~~~~l~~~gfk~i~w 340 (365)
+.. .++..+ ...++.|++|+||||| . . +.. .. .+..++++.||+....
T Consensus 105 ~~~~~~~~~~~~~--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~ 182 (225)
T 3p2e_A 105 FPWGTLLEYVIKP--NRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDV 182 (225)
T ss_dssp SCCHHHHHHHHTT--CHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEE
T ss_pred CCCcHHhhhhhcc--hHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeee
Confidence 321 111111 1258999999999999 1 0 000 01 1677889999987655
Q ss_pred Ee
Q 017839 341 AT 342 (365)
Q Consensus 341 ~v 342 (365)
..
T Consensus 183 ~~ 184 (225)
T 3p2e_A 183 KE 184 (225)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-10 Score=103.66 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=73.2
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCC---CCC---CCccceeE
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRL---PLF---DGVLDVVR 288 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~L---PF~---D~SFDlV~ 288 (365)
.+||+|||+|.++..++++ +..|+++++ +..+.+.+.+ .++ +.++.++++.. +++ +++||+|+
T Consensus 68 ~vLDlG~G~G~~~~~la~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~ 145 (254)
T 2h00_A 68 RGIDIGTGASCIYPLLGATLNGWYFLATEV--DDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 145 (254)
T ss_dssp EEEEESCTTTTHHHHHHHHHHCCEEEEEES--CHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred EEEEeCCChhHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEE
Confidence 4599999999999988876 578887554 4666665543 233 67888887652 565 37999999
Q ss_pred EcchhhcccC------------hhhHHHHHHHHHhhhCCCC----C---------------------c-chhhhhHHHHH
Q 017839 289 CGHAVNRWIP------------VIMMEFLFYDVDRVLRGGG----K---------------------A-SDLENVYGPLI 330 (365)
Q Consensus 289 s~~~L~~w~d------------~~~le~aL~Ei~RVLRPGG----~---------------------~-~~l~~~~~~~l 330 (365)
++-.+++... .......+.+++|+||||| . . ....+.+..++
T Consensus 146 ~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l 225 (254)
T 2h00_A 146 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEEL 225 (254)
T ss_dssp ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHH
T ss_pred ECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHH
Confidence 9854432210 0011245679999999999 0 0 00112466789
Q ss_pred HhhCCceeeEEe
Q 017839 331 GKLGYKKVKWAT 342 (365)
Q Consensus 331 ~~~gfk~i~w~v 342 (365)
++.||+.++...
T Consensus 226 ~~~Gf~~v~~~~ 237 (254)
T 2h00_A 226 RIQGVPKVTYTE 237 (254)
T ss_dssp HHTTCSEEEEEE
T ss_pred HHcCCCceEEEE
Confidence 999998876653
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.9e-10 Score=97.58 Aligned_cols=129 Identities=16% Similarity=0.071 Sum_probs=75.1
Q ss_pred eEEEEcCcccHHHHHHhhc-C----------CeEEEeccCCChhHHHHHHHcCCCcEE-eccCCCCC--------CCCCc
Q 017839 224 LGIDVGGATGSFAARMKLY-N----------ITILTTTMNLGAPYSEAAALRGLVPLH-VPLQQRLP--------LFDGV 283 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g----------v~Vv~~~ldl~~~~~e~a~~Rg~v~~~-~g~ae~LP--------F~D~S 283 (365)
.+||||||+|.++..++++ + ..|++++++... ....+.++ .++....+ +++++
T Consensus 25 ~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (196)
T 2nyu_A 25 RVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-------PLEGATFLCPADVTDPRTSQRILEVLPGRR 97 (196)
T ss_dssp EEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-------CCTTCEEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred EEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-------cCCCCeEEEeccCCCHHHHHHHHHhcCCCC
Confidence 4599999999999999986 4 577776554211 01224566 66655543 45679
Q ss_pred cceeEEcchhh---cccChh-----hHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCCC
Q 017839 284 LDVVRCGHAVN---RWIPVI-----MMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPNS 348 (365)
Q Consensus 284 FDlV~s~~~L~---~w~d~~-----~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~ 348 (365)
||+|+|..+++ +|..+. ..+.++.++.|+||||| ..++..+ +...++.. |+.+.+........
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~-~~~~l~~~-f~~v~~~~~~~~~~ 175 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRR-LQRRLTEE-FQNVRIIKPEASRK 175 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHH-HHHHHHHH-EEEEEEECCC----
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHH-HHHHHHHH-hcceEEECCcccCc
Confidence 99999965432 222111 11468999999999999 2222222 44444443 66666543222212
Q ss_pred CCCceEEEEeeec
Q 017839 349 KNGEVYLTALLQK 361 (365)
Q Consensus 349 ~~~~~y~sall~K 361 (365)
...|.|+.+.--|
T Consensus 176 ~~~e~~~v~~g~~ 188 (196)
T 2nyu_A 176 ESSEVYFLATQYH 188 (196)
T ss_dssp ----EEEEEEEEC
T ss_pred cCceEEEEeeecC
Confidence 5678888765544
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=99.62 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=70.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC--CCcEEeccCCCCCC---CCCccceeEEcchhhcc-c
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG--LVPLHVPLQQRLPL---FDGVLDVVRCGHAVNRW-I 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg--~v~~~~g~ae~LPF---~D~SFDlV~s~~~L~~w-~ 297 (365)
.+||||||+. .+|.+..|.+.+.++. .+.+..++++++|+ ++++||+|+|..+++|+ .
T Consensus 15 ~vL~~~~g~v----------------~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~ 78 (176)
T 2ld4_A 15 FVAVVWDKSS----------------PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTL 78 (176)
T ss_dssp EEEEEECTTS----------------CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCC
T ss_pred EEEEecCCce----------------eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhccc
Confidence 3599999961 2455567777776652 37888999999988 89999999999999776 3
Q ss_pred ChhhHHHHHHHHHhhhCCCC----Cc---c------h--hhhhHHHHHHhhCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG----KA---S------D--LENVYGPLIGKLGY 335 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG----~~---~------~--l~~~~~~~l~~~gf 335 (365)
+ .+.+++|++|+||||| .. . . -.+.|..++++.||
T Consensus 79 ~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 79 H---SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp C---CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred C---HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 3 3479999999999999 00 0 0 02357889999999
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-11 Score=118.97 Aligned_cols=103 Identities=14% Similarity=0.043 Sum_probs=72.3
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-CCe-EEEeccCCChhHHHHHHH-----------c----CCCcE
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-NIT-ILTTTMNLGAPYSEAAAL-----------R----GLVPL 269 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-gv~-Vv~~~ldl~~~~~e~a~~-----------R----g~v~~ 269 (365)
.+..+++.....+|. ++||||||+|.++..++.. +.. |+|+++ +..+.+.+.+ . +.+.+
T Consensus 161 ~i~~il~~l~l~~gd--~VLDLGCGtG~l~l~lA~~~g~~kVvGIDi--S~~~lelAr~n~e~frkr~~~~Gl~~~rVef 236 (438)
T 3uwp_A 161 LVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEK--ADIPAKYAETMDREFRKWMKWYGKKHAEYTL 236 (438)
T ss_dssp HHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHHHCCCSEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred HHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence 345555533222243 4699999999999998864 654 777554 4444443322 1 34778
Q ss_pred EeccCCCCCCCC--CccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 270 HVPLQQRLPLFD--GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 270 ~~g~ae~LPF~D--~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.||+..+||.+ ..||+|+++..+ ++. ++..+|.|++|+|||||
T Consensus 237 i~GD~~~lp~~d~~~~aDVVf~Nn~~-F~p---dl~~aL~Ei~RvLKPGG 282 (438)
T 3uwp_A 237 ERGDFLSEEWRERIANTSVIFVNNFA-FGP---EVDHQLKERFANMKEGG 282 (438)
T ss_dssp EECCTTSHHHHHHHHTCSEEEECCTT-CCH---HHHHHHHHHHTTSCTTC
T ss_pred EECcccCCccccccCCccEEEEcccc-cCc---hHHHHHHHHHHcCCCCc
Confidence 999999999876 589999998765 443 35678999999999999
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=101.08 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=67.3
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC--CCcEEeccCCCCC--CCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQRLP--LFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~LP--F~D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|.++..+++++. .|++++ ++..+.+.+.+ .+ .+.++.+++..++ +++++||+|++...++
T Consensus 47 ~vLDlgcG~G~~~~~~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~ 124 (189)
T 3p9n_A 47 AVLDLYAGSGALGLEALSRGAASVLFVE--SDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYN 124 (189)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEEEE--CCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTT
T ss_pred EEEEeCCCcCHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCC
Confidence 459999999999998888764 577654 45666655543 24 3678888877764 5689999999987764
Q ss_pred cccChhhHHHHHHHHHh--hhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDR--VLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~R--VLRPGG 317 (365)
+. .+..+.++.++.| +|||||
T Consensus 125 ~~--~~~~~~~l~~~~~~~~L~pgG 147 (189)
T 3p9n_A 125 VD--SADVDAILAALGTNGWTREGT 147 (189)
T ss_dssp SC--HHHHHHHHHHHHHSSSCCTTC
T ss_pred cc--hhhHHHHHHHHHhcCccCCCe
Confidence 32 1245679999999 999999
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=111.82 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=79.7
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
.+||||||+|.++..++++ +.++++ +|+ ..+.+.+.+...+.++.++... |++ .||+|++.+++++|.+..
T Consensus 196 ~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~- 268 (358)
T 1zg3_A 196 SLVDVGGGTGGVTKLIHEIFPHLKCTV--FDQ-PQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQ- 268 (358)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTSEEEE--EEC-HHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHH-
T ss_pred EEEEECCCcCHHHHHHHHHCCCCeEEE--ecc-HHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHH-
Confidence 4699999999999999987 356654 444 3343332222236778888766 776 399999999999987543
Q ss_pred HHHHHHHHHhhhCC---CC---------C--cc-----h------------------hhhhHHHHHHhhCCceeeEEe
Q 017839 302 MEFLFYDVDRVLRG---GG---------K--AS-----D------------------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 302 le~aL~Ei~RVLRP---GG---------~--~~-----~------------------l~~~~~~~l~~~gfk~i~w~v 342 (365)
...+|+++.|+||| || . .. . -.+.|..++++.||+.++...
T Consensus 269 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 44799999999999 99 1 11 0 012467889999999887543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-10 Score=106.43 Aligned_cols=106 Identities=11% Similarity=0.004 Sum_probs=76.0
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc-----C--CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR-----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R-----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..+++. +..++++ |+++.+.+.+.++ | .+.+..+++.. ++++++||+|++
T Consensus 113 ~VLD~G~G~G~~~~~la~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~---- 185 (275)
T 1yb2_A 113 DILEVGVGSGNMSSYILYALNGKGTLTVV--ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA---- 185 (275)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSSEEEEE--CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE----
T ss_pred EEEEecCCCCHHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE----
Confidence 4599999999999999987 6778765 4456666555432 4 35678888777 788899999998
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEE
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
++.+. ..++.++.|+||||| ...+.. .+...+++.||+.++..
T Consensus 186 -~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 186 -DIPDP---WNHVQKIASMMKPGSVATFYLPNFDQSE-KTVLSLSASGMHHLETV 235 (275)
T ss_dssp -CCSCG---GGSHHHHHHTEEEEEEEEEEESSHHHHH-HHHHHSGGGTEEEEEEE
T ss_pred -cCcCH---HHHHHHHHHHcCCCCEEEEEeCCHHHHH-HHHHHHHHCCCeEEEEE
Confidence 33332 358999999999999 122222 35567788999765443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.4e-10 Score=102.39 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=74.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----CC---CcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----GL---VPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g~---v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..+++. +..++++ |++..+.+.+.++ |. +.+..+++... +++++||+|++.
T Consensus 96 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~--D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~--- 169 (255)
T 3mb5_A 96 FIVEAGVGSGALTLFLANIVGPEGRVVSY--EIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILD--- 169 (255)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEEC---
T ss_pred EEEEecCCchHHHHHHHHHhCCCeEEEEE--ecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEEC---
Confidence 4599999999999999987 5777765 4456666655443 32 66777887644 788999999983
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhC--Cceee
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLG--YKKVK 339 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~g--fk~i~ 339 (365)
+.+. ..++.++.|+||||| ..++.. .....+++.| |..++
T Consensus 170 --~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~-~~~~~l~~~g~~f~~~~ 218 (255)
T 3mb5_A 170 --LPQP---ERVVEHAAKALKPGGFFVAYTPCSNQVM-RLHEKLREFKDYFMKPR 218 (255)
T ss_dssp --SSCG---GGGHHHHHHHEEEEEEEEEEESSHHHHH-HHHHHHHHTGGGBSCCE
T ss_pred --CCCH---HHHHHHHHHHcCCCCEEEEEECCHHHHH-HHHHHHHHcCCCccccE
Confidence 3322 258899999999999 222333 3667888899 86654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-10 Score=103.37 Aligned_cols=104 Identities=17% Similarity=0.150 Sum_probs=73.0
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc-----C----CCcEEeccCCCCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR-----G----LVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R-----g----~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.+||+|||+|.++..+++. +..+++++ .+..+.+.+.++ | .+.+..+++..+++++++||+|++..
T Consensus 102 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 179 (280)
T 1i9g_A 102 RVLEAGAGSGALTLSLLRAVGPAGQVISYE--QRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM 179 (280)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTSEEEEEC--SCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES
T ss_pred EEEEEcccccHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECC
Confidence 4599999999999999985 56777654 456665554432 4 36778889888899999999999832
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHh-hCCcee
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGK-LGYKKV 338 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~-~gfk~i 338 (365)
.+. ..++.++.|+||||| ..+++.+ ....++. .+|..+
T Consensus 180 -----~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~~l~~~~~f~~~ 225 (280)
T 1i9g_A 180 -----LAP---WEVLDAVSRLLVAGGVLMVYVATVTQLSR-IVEALRAKQCWTEP 225 (280)
T ss_dssp -----SCG---GGGHHHHHHHEEEEEEEEEEESSHHHHHH-HHHHHHHHSSBCCC
T ss_pred -----cCH---HHHHHHHHHhCCCCCEEEEEeCCHHHHHH-HHHHHHhcCCcCCc
Confidence 222 247899999999999 2233333 2333444 777654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=9.5e-10 Score=98.86 Aligned_cols=88 Identities=25% Similarity=0.370 Sum_probs=62.7
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCC-CCCCC-----Ccccee
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQR-LPLFD-----GVLDVV 287 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~-LPF~D-----~SFDlV 287 (365)
.|||||||+|.++..|++. +..|+++++ +..+.+.+.+ .| .+.++.+++.. +|..+ ++||+|
T Consensus 61 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 61 LVLELGAYCGYSAVRMARLLQPGARLLTMEI--NPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp EEEEECCTTSHHHHHHHTTSCTTCEEEEEES--CHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred EEEEECCCCCHHHHHHHHhCCCCCEEEEEeC--ChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 4599999999999999984 577876554 4666655543 24 26788887643 45433 799999
Q ss_pred EEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 288 RCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 288 ~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++....+++.+ ....+.++ |+|||||
T Consensus 139 ~~d~~~~~~~~---~~~~~~~~-~~LkpgG 164 (221)
T 3u81_A 139 FLDHWKDRYLP---DTLLLEKC-GLLRKGT 164 (221)
T ss_dssp EECSCGGGHHH---HHHHHHHT-TCCCTTC
T ss_pred EEcCCcccchH---HHHHHHhc-cccCCCe
Confidence 99887665542 22466677 9999999
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6.5e-10 Score=107.96 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=69.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++.|. .|++++++ . +.+.+.+ .| .+.++.++.+.++++ ++||+|++..+++|
T Consensus 53 ~VLDiGcGtG~ls~~la~~g~~~V~~vD~s--~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~ 128 (348)
T 2y1w_A 53 IVLDVGCGSGILSFFAAQAGARKIYAVEAS--T-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM 128 (348)
T ss_dssp EEEEETCTTSHHHHHHHHTTCSEEEEEECS--T-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTT
T ss_pred EEEEcCCCccHHHHHHHhCCCCEEEEECCH--H-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhc
Confidence 469999999999999998874 78876654 2 4444332 23 367888999988876 68999999988888
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.... ....+.++.|+|||||
T Consensus 129 ~~~~~-~~~~l~~~~~~LkpgG 149 (348)
T 2y1w_A 129 LFNER-MLESYLHAKKYLKPSG 149 (348)
T ss_dssp BTTTS-HHHHHHHGGGGEEEEE
T ss_pred CChHH-HHHHHHHHHhhcCCCe
Confidence 76543 3467889999999999
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-10 Score=99.91 Aligned_cols=83 Identities=13% Similarity=-0.021 Sum_probs=65.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||+|.++..+++.+..|+++++ +..+.+.+.++ | .+.+..+++...++.+++||+|++..++++..
T Consensus 80 ~vLdiG~G~G~~~~~la~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 157 (210)
T 3lbf_A 80 RVLEIGTGSGYQTAILAHLVQHVCSVER--IKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIP 157 (210)
T ss_dssp EEEEECCTTSHHHHHHHHHSSEEEEEES--CHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCC
T ss_pred EEEEEcCCCCHHHHHHHHhCCEEEEEec--CHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchhhhh
Confidence 4599999999999999998888887554 46666655442 3 25678888888777889999999999886654
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
+ ++.|+|||||
T Consensus 158 ~---------~~~~~L~pgG 168 (210)
T 3lbf_A 158 T---------ALMTQLDEGG 168 (210)
T ss_dssp T---------HHHHTEEEEE
T ss_pred H---------HHHHhcccCc
Confidence 2 5899999999
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.1e-10 Score=103.01 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=77.7
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHH----HHHHHcCCCcEEeccCCCCC---CCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYS----EAAALRGLVPLHVPLQQRLP---LFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~----e~a~~Rg~v~~~~g~ae~LP---F~D~SFDlV~s~~~L 293 (365)
.|||+|||||.++..+++. ...|++++ ++..+. +.+.++..+.++.+|+.... ...++||+|++....
T Consensus 79 ~VLDlG~GtG~~t~~la~~v~~~G~V~avD--~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~ 156 (232)
T 3id6_C 79 KVLYLGAASGTTISHVSDIIELNGKAYGVE--FSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ 156 (232)
T ss_dssp EEEEETCTTSHHHHHHHHHHTTTSEEEEEE--CCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC
T ss_pred EEEEEeecCCHHHHHHHHHhCCCCEEEEEE--CcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC
Confidence 4599999999999999875 24777644 455553 33445555677888876542 235799999987653
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC---------------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEE
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG---------------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTA 357 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG---------------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sa 357 (365)
.+ ..+.++..+.|+||||| ..++..+.....++..||+.++-..-..- ++++.++.+
T Consensus 157 ---~~--~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~--~~~h~~v~~ 228 (232)
T 3id6_C 157 ---PD--QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPY--DKDHAIVLS 228 (232)
T ss_dssp ---TT--HHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTT--CSSCEEEEE
T ss_pred ---hh--HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCC--cCceEEEEE
Confidence 11 23344556777999999 01122223445677789887754322211 456655544
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.2e-10 Score=97.55 Aligned_cols=84 Identities=12% Similarity=-0.007 Sum_probs=63.0
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||||||+|.++..+++. +..+++++ .+..+.+.+.+ .+. +.++.+++..++ ++++||+|++... .
T Consensus 68 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 68 RFIDVGTGPGLPGIPLSIVRPEAHFTLLD--SLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-A- 142 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTSEEEEEE--SCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS-S-
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc-C-
Confidence 4599999999999999876 56777654 44566555443 243 667888888776 5789999998542 1
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+.++.++.|+|||||
T Consensus 143 -----~~~~~l~~~~~~L~~gG 159 (207)
T 1jsx_A 143 -----SLNDMVSWCHHLPGEQG 159 (207)
T ss_dssp -----SHHHHHHHHTTSEEEEE
T ss_pred -----CHHHHHHHHHHhcCCCc
Confidence 23478999999999999
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-10 Score=101.39 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=64.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+||||||+|.++..+++.+..++++++ +..+.+.+.++ +.+.++.+++......+++||+|++..+++++.
T Consensus 73 ~vLdiG~G~G~~~~~l~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-- 148 (231)
T 1vbf_A 73 KVLEIGTGIGYYTALIAEIVDKVVSVEI--NEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL-- 148 (231)
T ss_dssp EEEEECCTTSHHHHHHHHHSSEEEEEES--CHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC--
T ss_pred EEEEEcCCCCHHHHHHHHHcCEEEEEeC--CHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHHHH--
Confidence 4599999999999999998877776554 46676666544 246778888776333578999999999987653
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
.++.|+|||||
T Consensus 149 -------~~~~~~L~pgG 159 (231)
T 1vbf_A 149 -------CKPYEQLKEGG 159 (231)
T ss_dssp -------HHHHHTEEEEE
T ss_pred -------HHHHHHcCCCc
Confidence 26899999999
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.2e-10 Score=103.94 Aligned_cols=105 Identities=10% Similarity=0.143 Sum_probs=75.7
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++.+. .|+++ |++..+.+.+.+ .|. +.++.+++..+++ +++||+|++....
T Consensus 128 ~VLDlgcG~G~~~~~la~~~~~~V~~v--D~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~-- 202 (278)
T 2frn_A 128 LVVDMFAGIGHLSLPIAVYGKAKVIAI--EKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV-- 202 (278)
T ss_dssp EEEETTCTTTTTHHHHHHHTCCEEEEE--CCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS--
T ss_pred EEEEecccCCHHHHHHHHhCCCEEEEE--ECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCch--
Confidence 459999999999999999876 47764 555666655543 243 5588899998887 8899999985431
Q ss_pred ccChhhHHHHHHHHHhhhCCCC-------C-----cchhhhhHHHHHHhhCCcee
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG-------K-----ASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG-------~-----~~~l~~~~~~~l~~~gfk~i 338 (365)
. ...++.++.|+||||| . ..+..+.....+++.||+..
T Consensus 203 --~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 203 --R---THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp --S---GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred --h---HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeE
Confidence 1 1257889999999999 1 11222345678889998653
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.2e-10 Score=110.37 Aligned_cols=92 Identities=9% Similarity=0.023 Sum_probs=71.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cC-CCcEEeccCCCCCCCCCccceeEEcchhhccc-
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI- 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~- 297 (365)
.|||+|||+|.++..+++++..|++++++ ..+.+.+.+ .+ .+.++.+++..+++.+++||+|+++..+++..
T Consensus 236 ~VLDlGcG~G~~~~~la~~g~~V~gvDis--~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~ 313 (381)
T 3dmg_A 236 QVLDLGAGYGALTLPLARMGAEVVGVEDD--LASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGA 313 (381)
T ss_dssp EEEEETCTTSTTHHHHHHTTCEEEEEESB--HHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCS
T ss_pred EEEEEeeeCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhccc
Confidence 35999999999999999999888875554 556555433 23 26788899999988889999999998875411
Q ss_pred -ChhhHHHHHHHHHhhhCCCC
Q 017839 298 -PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 -d~~~le~aL~Ei~RVLRPGG 317 (365)
.....+.++.++.|+|||||
T Consensus 314 ~~~~~~~~~l~~~~~~LkpGG 334 (381)
T 3dmg_A 314 VILDVAQAFVNVAAARLRPGG 334 (381)
T ss_dssp SCCHHHHHHHHHHHHHEEEEE
T ss_pred ccHHHHHHHHHHHHHhcCcCc
Confidence 12345679999999999999
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-09 Score=103.41 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=77.4
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----CC--CcEEeccCCCCCCCCCccceeEEc----
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----GL--VPLHVPLQQRLPLFDGVLDVVRCG---- 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g~ae~LPF~D~SFDlV~s~---- 290 (365)
.|||+|||+|..+..|++. +..|++. |++..+.+.+.++ |. +.++.+++..++..+++||+|++.
T Consensus 121 ~VLDlg~G~G~~t~~la~~~~~~~~v~av--D~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcs 198 (315)
T 1ixk_A 121 IVADMAAAPGGKTSYLAQLMRNDGVIYAF--DVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT 198 (315)
T ss_dssp EEEECCSSCSHHHHHHHHHTTTCSEEEEE--CSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred EEEEeCCCCCHHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCC
Confidence 3599999999999999875 2567764 4556665554432 43 567788888887777899999973
Q ss_pred --chhhc-------ccChh------hHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhhCCceee
Q 017839 291 --HAVNR-------WIPVI------MMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 291 --~~L~~-------w~d~~------~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~gfk~i~ 339 (365)
.++++ |.... ....+|.++.|+||||| ..++.+++...++++.||+.+.
T Consensus 199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~~ 271 (315)
T 1ixk_A 199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLP 271 (315)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEEC
T ss_pred CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEec
Confidence 12221 21110 11468999999999999 2344445566778888887654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.6e-10 Score=107.37 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=76.6
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCCCCC--CCCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQRLPL--FDGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~LPF--~D~SFDlV~s 289 (365)
.|||||||+|.++..++++ +..|+++++ ++.+.+.+.++ ..+.++.+++..+++ .+++||+|++
T Consensus 98 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~ 175 (304)
T 3bwc_A 98 RVLIIGGGDGGVLREVLRHGTVEHCDLVDI--DGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVII 175 (304)
T ss_dssp EEEEEECTTSHHHHHHHTCTTCCEEEEEES--CHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEE
T ss_pred eEEEEcCCCCHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEE
Confidence 4599999999999999987 346766554 46666655432 236678888777665 4889999999
Q ss_pred cchhhcccChhhH--HHHHHHHHhhhCCCC------Ccc----hhhhhHHHHHHhhCCceeeEE
Q 017839 290 GHAVNRWIPVIMM--EFLFYDVDRVLRGGG------KAS----DLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 290 ~~~L~~w~d~~~l--e~aL~Ei~RVLRPGG------~~~----~l~~~~~~~l~~~gfk~i~w~ 341 (365)
......+. ...+ ..++.++.|+||||| ... ...+.+...+++.||..++-.
T Consensus 176 d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 176 DTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp ECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence 76553332 2212 468999999999999 111 122346678889999876533
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-10 Score=100.66 Aligned_cols=88 Identities=10% Similarity=0.008 Sum_probs=64.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc----C----CCcEEeccCCCC-CC-CCCc-cceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR----G----LVPLHVPLQQRL-PL-FDGV-LDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R----g----~v~~~~g~ae~L-PF-~D~S-FDlV~s~~ 291 (365)
.+||+|||+|.++..+++++. .|+++ |++..+.+.+.++ | .+.++.+++..+ +. .+++ ||+|++..
T Consensus 56 ~vLDlGcGtG~~~~~~~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 56 ECLDGFAGSGSLGFEALSRQAKKVTFL--ELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred eEEEcCCccCHHHHHHHHccCCEEEEE--ECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 359999999999998877774 67764 5556776655432 3 356788887664 32 4788 99999987
Q ss_pred hhhcccChhhHHHHHHHH--HhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDV--DRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei--~RVLRPGG 317 (365)
.++ .. ..+.++.++ .|+|||||
T Consensus 134 ~~~-~~---~~~~~l~~~~~~~~LkpgG 157 (201)
T 2ift_A 134 PFH-FN---LAEQAISLLCENNWLKPNA 157 (201)
T ss_dssp CSS-SC---HHHHHHHHHHHTTCEEEEE
T ss_pred CCC-Cc---cHHHHHHHHHhcCccCCCc
Confidence 743 22 345688888 78999999
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=99.47 Aligned_cols=92 Identities=14% Similarity=0.031 Sum_probs=63.7
Q ss_pred eEEEEcCcccHHHHHHhhc----CCeEEEeccCCChhHHHHHHHc-------CC--------------------------
Q 017839 224 LGIDVGGATGSFAARMKLY----NITILTTTMNLGAPYSEAAALR-------GL-------------------------- 266 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~----gv~Vv~~~ldl~~~~~e~a~~R-------g~-------------------------- 266 (365)
.+||+|||+|.++..++++ +..|+++++ +..+.+.+.++ ++
T Consensus 54 ~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDi--s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (250)
T 1o9g_A 54 TLWDPCCGSGYLLTVLGLLHRRSLRQVIASDV--DPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131 (250)
T ss_dssp EEEETTCTTSHHHHHHHHHTGGGEEEEEEEES--CHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHhccCCCeEEEEEC--CHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence 3599999999999999876 456776554 45665554421 11
Q ss_pred --Cc-------------EEeccCCCCCC-----CCCccceeEEcchhhcccC------hhhHHHHHHHHHhhhCCCC
Q 017839 267 --VP-------------LHVPLQQRLPL-----FDGVLDVVRCGHAVNRWIP------VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 267 --v~-------------~~~g~ae~LPF-----~D~SFDlV~s~~~L~~w~d------~~~le~aL~Ei~RVLRPGG 317 (365)
+. +..++...... .+++||+|+|+..+..... .+....++.++.|+|||||
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 208 (250)
T 1o9g_A 132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 208 (250)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCc
Confidence 44 77787665321 4558999999865543322 2345678999999999999
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-09 Score=100.17 Aligned_cols=86 Identities=17% Similarity=0.075 Sum_probs=62.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCC-CCCCC--CccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQR-LPLFD--GVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~-LPF~D--~SFDlV~s~ 290 (365)
.|||||||+|..+..|++. +..|+++++ +..+.+.+.++ | .+.++.+++.. +|..+ ++||+|++.
T Consensus 66 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 66 RILEIGTLGGYSTIWMARELPADGQLLTLEA--DAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp EEEEECCTTSHHHHHHHTTSCTTCEEEEEEC--CHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred EEEEecCCchHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 4599999999999999987 677876554 46666555432 3 36788888755 55544 499999986
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.... ....++.++.|+|||||
T Consensus 144 ~~~~------~~~~~l~~~~~~LkpGG 164 (248)
T 3tfw_A 144 ADKP------NNPHYLRWALRYSRPGT 164 (248)
T ss_dssp SCGG------GHHHHHHHHHHTCCTTC
T ss_pred CchH------HHHHHHHHHHHhcCCCe
Confidence 5321 23468999999999999
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-09 Score=99.94 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=64.1
Q ss_pred eEEEEcCcccHHHHHHhh--cCCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCC-CC-CCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKL--YNITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQR-LP-LFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae--~gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~-LP-F~D~SFDlV~s~~~ 292 (365)
.+||||||+|.++..|++ .+..|+++++ +..+.+.+.+ .| .+.++.+++.. +| +.+++||+|++...
T Consensus 74 ~vLDiG~G~G~~~~~la~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~ 151 (232)
T 3ntv_A 74 NILEIGTAIGYSSMQFASISDDIHVTTIER--NETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA 151 (232)
T ss_dssp EEEEECCSSSHHHHHHHTTCTTCEEEEEEC--CHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred EEEEEeCchhHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence 459999999999999998 4577776544 4666655543 24 46788888755 56 66899999997643
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.. ....++.++.|+|||||
T Consensus 152 ~~------~~~~~l~~~~~~LkpgG 170 (232)
T 3ntv_A 152 KA------QSKKFFEIYTPLLKHQG 170 (232)
T ss_dssp SS------SHHHHHHHHGGGEEEEE
T ss_pred HH------HHHHHHHHHHHhcCCCe
Confidence 21 23468999999999999
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-09 Score=99.79 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=73.3
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----CC---CcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----GL---VPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g~---v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..+++. +..++++ |.+..+.+.+.++ |. +.+..+++... +++++||+|++.
T Consensus 115 ~VLDiG~G~G~~~~~la~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~--- 188 (277)
T 1o54_A 115 RIIDTGVGSGAMCAVLARAVGSSGKVFAY--EKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLD--- 188 (277)
T ss_dssp EEEEECCTTSHHHHHHHHHTTTTCEEEEE--CCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC---
T ss_pred EEEEECCcCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEEC---
Confidence 4599999999999999887 4677764 4456666555432 42 56777877666 778899999983
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceee
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~ 339 (365)
..+. ..++.++.|+||||| ..++..+ ....+++.||..++
T Consensus 189 --~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~~l~~~gf~~~~ 235 (277)
T 1o54_A 189 --VPDP---WNYIDKCWEALKGGGRFATVCPTTNQVQE-TLKKLQELPFIRIE 235 (277)
T ss_dssp --CSCG---GGTHHHHHHHEEEEEEEEEEESSHHHHHH-HHHHHHHSSEEEEE
T ss_pred --CcCH---HHHHHHHHHHcCCCCEEEEEeCCHHHHHH-HHHHHHHCCCceeE
Confidence 2222 257899999999999 2233333 55667779997653
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=109.93 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=68.4
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++.+ ..|++++++ . +.+.+.+ .| .+.++.++.+.++++ +.||+|+|...+++
T Consensus 161 ~VLDiGcGtG~la~~la~~~~~~V~gvD~s--~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~ 236 (480)
T 3b3j_A 161 IVLDVGCGSGILSFFAAQAGARKIYAVEAS--T-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM 236 (480)
T ss_dssp EEEEESCSTTHHHHHHHHTTCSEEEEEECH--H-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHH
T ss_pred EEEEecCcccHHHHHHHHcCCCEEEEEEcH--H-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHh
Confidence 46999999999999999876 477775543 4 5444432 23 367888998888876 58999999888888
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+.. ....+.++.|+|||||
T Consensus 237 ~~~e~-~~~~l~~~~~~LkpgG 257 (480)
T 3b3j_A 237 LFNER-MLESYLHAKKYLKPSG 257 (480)
T ss_dssp HTCHH-HHHHHHHGGGGEEEEE
T ss_pred cCcHH-HHHHHHHHHHhcCCCC
Confidence 86554 3457789999999999
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.3e-10 Score=104.69 Aligned_cols=88 Identities=10% Similarity=0.006 Sum_probs=58.9
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-------C-CCcEE--eccCCCCCCCCCccceeEEcch
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-------G-LVPLH--VPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-------g-~v~~~--~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
..|||||||+|.++..++++ ..|++++++. +...+.++ + .+.++ .+++..+| +++||+|+|..+
T Consensus 76 ~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~ 149 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASR-PHVMDVRAYT---LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG 149 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTS-TTEEEEEEEC---CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred CEEEEeCcCCCHHHHHHHHc-CcEEEEECch---hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc
Confidence 35699999999999999988 5677655542 21111111 1 24567 77888876 889999999765
Q ss_pred hhccc----ChhhHHHHHHHHHhhhCCCC
Q 017839 293 VNRWI----PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~----d~~~le~aL~Ei~RVLRPGG 317 (365)
+... +......+|.++.|+|||||
T Consensus 150 -~~~~~~~~d~~~~l~~L~~~~r~LkpGG 177 (265)
T 2oxt_A 150 -ESSPKWSVESERTIKILELLEKWKVKNP 177 (265)
T ss_dssp -CCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred -ccCCccchhHHHHHHHHHHHHHHhccCC
Confidence 2211 11100137899999999999
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.90 E-value=9e-10 Score=94.79 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=62.7
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCC-CCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQR-LPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~-LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|.++..+++++ ..|+++ |++..+.+.+.+ .+ .+.++.+++.. ++..++.||+|++...++
T Consensus 34 ~vLDlGcG~G~~~~~l~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~ 111 (177)
T 2esr_A 34 RVLDLFAGSGGLAIEAVSRGMSAAVLV--EKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA 111 (177)
T ss_dssp EEEEETCTTCHHHHHHHHTTCCEEEEE--CCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred eEEEeCCCCCHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCCC
Confidence 45999999999999999886 477764 455666665543 23 25677787766 566677899999986642
Q ss_pred cccChhhHHHHHHHHH--hhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVD--RVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~--RVLRPGG 317 (365)
. . ..+..+..+. |+|||||
T Consensus 112 ~-~---~~~~~~~~l~~~~~L~~gG 132 (177)
T 2esr_A 112 K-E---TIVATIEALAAKNLLSEQV 132 (177)
T ss_dssp H-H---HHHHHHHHHHHTTCEEEEE
T ss_pred c-c---hHHHHHHHHHhCCCcCCCc
Confidence 1 1 2234566665 9999999
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=104.25 Aligned_cols=83 Identities=20% Similarity=0.083 Sum_probs=63.7
Q ss_pred eEEEEcCcccHHHHHHhhcCC---eEEEeccCCChhHHHHHHHc----CC--CcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYNI---TILTTTMNLGAPYSEAAALR----GL--VPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv---~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..+++.+. .|+++++ +..+.+.+.++ |. +.+..+++...+..+++||+|++..+++
T Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~ 155 (317)
T 1dl5_A 78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY--SRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVD 155 (317)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEES--CHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred EEEEecCCchHHHHHHHHhcCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCHH
Confidence 459999999999999998743 3776554 46666655443 43 6778888888766788999999999987
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.. .++.|+|||||
T Consensus 156 ~~~---------~~~~~~LkpgG 169 (317)
T 1dl5_A 156 EVP---------ETWFTQLKEGG 169 (317)
T ss_dssp CCC---------HHHHHHEEEEE
T ss_pred HHH---------HHHHHhcCCCc
Confidence 643 36899999999
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-09 Score=104.49 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=65.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cC-----CCcEEeccCCCCCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RG-----LVPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg-----~v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
.+||+|||+|.++..++++ +..|+++++ +..+.+.+.+ .| .+.++.+++.. ++++++||+|+++-.
T Consensus 225 ~VLDlGcG~G~~s~~la~~~p~~~V~gvD~--s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 225 EIVDLGCGNGVIGLTLLDKNPQAKVVFVDE--SPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 301 (375)
T ss_dssp EEEEETCTTCHHHHHHHHHCTTCEEEEEES--CHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCC
T ss_pred eEEEEeCcchHHHHHHHHHCCCCEEEEEEC--cHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCC
Confidence 4599999999999999988 578887554 4566555433 23 24557888766 678899999999988
Q ss_pred hhc--ccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VNR--WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~--w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++ +........++.++.|+|||||
T Consensus 302 fh~~~~~~~~~~~~~l~~~~~~LkpgG 328 (375)
T 4dcm_A 302 FHQQHALTDNVAWEMFHHARRCLKING 328 (375)
T ss_dssp C-------CCHHHHHHHHHHHHEEEEE
T ss_pred cccCcccCHHHHHHHHHHHHHhCCCCc
Confidence 753 2223334468999999999999
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.2e-10 Score=106.37 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=59.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC--------CCcEE--eccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG--------LVPLH--VPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg--------~v~~~--~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.|||+|||||.++..++++ ..|++++++. +...+.++. .+.++ .+++..+| +++||+|+|..+
T Consensus 85 ~VLDlGcGtG~~s~~la~~-~~V~gVD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~- 157 (276)
T 2wa2_A 85 TVVDLGCGRGSWSYYAASQ-PNVREVKAYT---LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG- 157 (276)
T ss_dssp EEEEESCTTCHHHHHHHTS-TTEEEEEEEC---CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC-
T ss_pred EEEEeccCCCHHHHHHHHc-CCEEEEECch---hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC-
Confidence 4699999999999999988 5677655542 211111111 24577 78888877 889999999866
Q ss_pred hcc----cChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRW----IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w----~d~~~le~aL~Ei~RVLRPGG 317 (365)
... .+......+|.++.|+|||||
T Consensus 158 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG 185 (276)
T 2wa2_A 158 ESNPTAAVEASRTLTVLNVISRWLEYNQ 185 (276)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cCCCchhhhHHHHHHHHHHHHHHhccCC
Confidence 211 111101137899999999999
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-09 Score=94.16 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=62.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++..+++.+..+++++ .+..+.+.+.++ + .+.+..++.....++++.||+|++..
T Consensus 94 ~vldiG~G~G~~~~~l~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~----- 166 (248)
T 2yvl_A 94 RVLEFGTGSGALLAVLSEVAGEVWTFE--AVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV----- 166 (248)
T ss_dssp EEEEECCTTSHHHHHHHHHSSEEEEEC--SCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS-----
T ss_pred EEEEeCCCccHHHHHHHHhCCEEEEEe--cCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC-----
Confidence 459999999999999998877777654 456666655442 3 35677777776544788999999832
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+. ..++.++.|+|||||
T Consensus 167 ~~~---~~~l~~~~~~L~~gG 184 (248)
T 2yvl_A 167 REP---WHYLEKVHKSLMEGA 184 (248)
T ss_dssp SCG---GGGHHHHHHHBCTTC
T ss_pred cCH---HHHHHHHHHHcCCCC
Confidence 222 257899999999999
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.2e-09 Score=96.04 Aligned_cols=92 Identities=13% Similarity=0.032 Sum_probs=65.1
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc-------C---CCcEEeccCCCC-------CCCCCcc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR-------G---LVPLHVPLQQRL-------PLFDGVL 284 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R-------g---~v~~~~g~ae~L-------PF~D~SF 284 (365)
.|||+|||+|.++..+++++ ..+++++ ++..+.+.+.++ + .+.++.++...+ +|++++|
T Consensus 39 ~VLDlG~G~G~~~l~la~~~~~~~v~gvD--i~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f 116 (260)
T 2ozv_A 39 RIADLGAGAGAAGMAVAARLEKAEVTLYE--RSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF 116 (260)
T ss_dssp EEEECCSSSSHHHHHHHHHCTTEEEEEEE--SSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred EEEEeCChHhHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence 45999999999999999874 5677654 446666665542 2 156788888776 4789999
Q ss_pred ceeEEcchhhcc---------------cChhhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNRW---------------IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~w---------------~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+|+++-.+... .....++.++.++.|+|||||
T Consensus 117 D~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG 164 (260)
T 2ozv_A 117 HHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGG 164 (260)
T ss_dssp EEEEECCCC---------------------CCHHHHHHHHHHHEEEEE
T ss_pred CEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCC
Confidence 999997322110 111235678999999999999
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-09 Score=93.83 Aligned_cols=88 Identities=8% Similarity=-0.040 Sum_probs=62.4
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCC----CCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQR----LPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~----LPF~D~SFDlV~s~~ 291 (365)
.+||+|||+|.++..+++++ ..|+++++ +..+.+.+.+ .+. +.++.+++.. +|+.+++||+|++..
T Consensus 47 ~vLD~GcG~G~~~~~~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~ 124 (187)
T 2fhp_A 47 MALDLYSGSGGLAIEAVSRGMDKSICIEK--NFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP 124 (187)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEEES--CHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEeCCccCHHHHHHHHcCCCEEEEEEC--CHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECC
Confidence 45999999999999888876 57776554 4566655433 232 5678887654 345588999999987
Q ss_pred hhhcccChhhHHHHHHHH--HhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDV--DRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei--~RVLRPGG 317 (365)
.++ ... .+..+..+ .|+|||||
T Consensus 125 ~~~-~~~---~~~~~~~l~~~~~L~~gG 148 (187)
T 2fhp_A 125 PYA-KQE---IVSQLEKMLERQLLTNEA 148 (187)
T ss_dssp CGG-GCC---HHHHHHHHHHTTCEEEEE
T ss_pred CCC-chh---HHHHHHHHHHhcccCCCC
Confidence 753 222 23456666 99999999
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.4e-09 Score=101.13 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=76.5
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHH----cC--CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|+++..++..+ ..++++++| ..+.+.+.+ .| .+.+..+++..+|++++.||+|+++-...
T Consensus 206 ~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~--~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg 283 (354)
T 3tma_A 206 RVLDPFTGSGTIALEAASTLGPTSPVYAGDLD--EKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHG 283 (354)
T ss_dssp CEEESSCTTSHHHHHHHHHHCTTSCEEEEESC--HHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSC
T ss_pred EEEeCCCCcCHHHHHHHHhhCCCceEEEEECC--HHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCCc
Confidence 45999999999999998864 788876554 566655433 35 47889999999998888999999954321
Q ss_pred ccc-Ch----hhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHhhCCceeeE
Q 017839 295 RWI-PV----IMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 295 ~w~-d~----~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~~gfk~i~w 340 (365)
... +. ...+.++.++.|+||||| .-.. .+.+..+.+ .||+..+-
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~-~~~~~~~~~-~g~~~~~~ 336 (354)
T 3tma_A 284 LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR-PALLKRALP-PGFALRHA 336 (354)
T ss_dssp C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC-HHHHHHHCC-TTEEEEEE
T ss_pred CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC-HHHHHHHhh-cCcEEEEE
Confidence 111 10 112568999999999999 1111 122334445 88776543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=96.12 Aligned_cols=112 Identities=11% Similarity=0.020 Sum_probs=72.7
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc---------C-------CCcEEecc----CCCCCC--C
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR---------G-------LVPLHVPL----QQRLPL--F 280 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R---------g-------~v~~~~g~----ae~LPF--~ 280 (365)
.|||||||+|.++..+++.|. .|++++++ +..+.+.+.++ | .+.+...+ ...++. .
T Consensus 82 ~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s-~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (281)
T 3bzb_A 82 TVCELGAGAGLVSIVAFLAGADQVVATDYP-DPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTG 160 (281)
T ss_dssp EEEETTCTTSHHHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHS
T ss_pred eEEEecccccHHHHHHHHcCCCEEEEEeCC-CHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhcc
Confidence 459999999999999998876 78775540 35555544322 1 23344222 112211 4
Q ss_pred CCccceeEEcchhhcccChhhHHHHHHHHHhhhC---C--CC-------C-cc---hhhhhHHHHHHhhC-Cceee
Q 017839 281 DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLR---G--GG-------K-AS---DLENVYGPLIGKLG-YKKVK 339 (365)
Q Consensus 281 D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLR---P--GG-------~-~~---~l~~~~~~~l~~~g-fk~i~ 339 (365)
+++||+|+++.++++.. ..+.++.++.|+|| | || . .. +....+...+++.| |+..+
T Consensus 161 ~~~fD~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~ 233 (281)
T 3bzb_A 161 LQRFQVVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP 233 (281)
T ss_dssp CSSBSEEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEE
T ss_pred CCCCCEEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEE
Confidence 68999999999987643 35579999999999 9 99 1 11 11223556788889 86654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-09 Score=100.16 Aligned_cols=86 Identities=10% Similarity=0.037 Sum_probs=62.6
Q ss_pred eEEEEcCcccHHHHHHhhc------CCeEEEeccCCChhHHHHHHH-cCCCcEEeccCCC---CCCCCC-ccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY------NITILTTTMNLGAPYSEAAAL-RGLVPLHVPLQQR---LPLFDG-VLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~------gv~Vv~~~ldl~~~~~e~a~~-Rg~v~~~~g~ae~---LPF~D~-SFDlV~s~~~ 292 (365)
.|||||||+|..+..|++. +..|++++++ ..+.+.+.. ...+.++.+++.. +|+.++ +||+|++...
T Consensus 84 ~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s--~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 84 TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRD--LSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESC--CTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred EEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCC--hHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 4599999999999999886 5788876654 333332222 1347788998877 476554 7999998654
Q ss_pred hhcccChhhHHHHHHHHHh-hhCCCC
Q 017839 293 VNRWIPVIMMEFLFYDVDR-VLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~R-VLRPGG 317 (365)
| . ....++.|+.| +|||||
T Consensus 162 --~-~---~~~~~l~~~~r~~LkpGG 181 (236)
T 2bm8_A 162 --H-A---NTFNIMKWAVDHLLEEGD 181 (236)
T ss_dssp --C-S---SHHHHHHHHHHHTCCTTC
T ss_pred --h-H---hHHHHHHHHHHhhCCCCC
Confidence 3 1 24568999998 999999
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-09 Score=97.43 Aligned_cols=86 Identities=22% Similarity=0.179 Sum_probs=64.4
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCC-CCCC--CCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQR-LPLF--DGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~-LPF~--D~SFDlV~s~~ 291 (365)
.|||||||+|.++..+++. +..++++ |.+..+.+.+.++ | .+.+..+++.. +|+. +++||+|++..
T Consensus 57 ~vLdiG~G~G~~~~~la~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 57 RILEIGTAIGYSAIRMAQALPEATIVSI--ERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTCEEEEE--CCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred EEEEecCCCcHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 4599999999999999987 5777765 4456666655443 3 36677787765 3554 78999999977
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
... ....++.++.|+|||||
T Consensus 135 ~~~------~~~~~l~~~~~~L~pgG 154 (233)
T 2gpy_A 135 AKG------QYRRFFDMYSPMVRPGG 154 (233)
T ss_dssp GGS------CHHHHHHHHGGGEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCe
Confidence 643 23468999999999999
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.86 E-value=5.7e-09 Score=98.88 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=62.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||||||+|.++..|++++..|+++++ +..+.+.+.++ + .+.++.+++.+++++ +||+|+++... +|
T Consensus 31 ~VLDiG~G~G~lt~~L~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlpy-~~ 105 (285)
T 1zq9_A 31 VVLEVGPGTGNMTVKLLEKAKKVVACEL--DPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLPY-QI 105 (285)
T ss_dssp EEEEECCTTSTTHHHHHHHSSEEEEEES--CHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECCG-GG
T ss_pred EEEEEcCcccHHHHHHHhhCCEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecCc-cc
Confidence 4699999999999999998888887554 46676655543 2 356888999888876 79999997544 44
Q ss_pred cChhhHHHHH--------------HHH--HhhhCCCC
Q 017839 297 IPVIMMEFLF--------------YDV--DRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL--------------~Ei--~RVLRPGG 317 (365)
..+. +...+ +|+ .|+|||||
T Consensus 106 ~~~~-~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg 141 (285)
T 1zq9_A 106 SSPF-VFKLLLHRPFFRCAILMFQREFALRLVAKPGD 141 (285)
T ss_dssp HHHH-HHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTC
T ss_pred chHH-HHHHHhcCcchhhhhhhhhHHHHHHHhcCCCC
Confidence 4221 11122 355 37999999
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-09 Score=97.31 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=63.2
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc------------CC--CcEEeccCCC-CC--CCCCcc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR------------GL--VPLHVPLQQR-LP--LFDGVL 284 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R------------g~--v~~~~g~ae~-LP--F~D~SF 284 (365)
.+||||||+|.++..+++.+ ..+++++ ++..+.+.+.++ +. +.++.+++.. || |.+++|
T Consensus 52 ~vLDiGcG~G~~~~~la~~~~~~~v~gvD--~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 52 TIADIGCGFGGLMIDLSPAFPEDLILGME--IRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp EEEEETCTTSHHHHHHHHHSTTSEEEEEE--SCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred EEEEEcCCCCHHHHHHHHhCCCCCEEEEE--cCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 46999999999999999875 4677654 456665544321 43 5678888776 77 889999
Q ss_pred ceeEEcchhhcccChh------hHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNRWIPVI------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~w~d~~------~le~aL~Ei~RVLRPGG 317 (365)
|.|+.... ..|.... ....++.++.|+|||||
T Consensus 130 d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG 167 (246)
T 2vdv_E 130 SKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGG 167 (246)
T ss_dssp EEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEE
T ss_pred CEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCC
Confidence 99986432 1221100 00258999999999999
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=99.54 Aligned_cols=116 Identities=12% Similarity=0.018 Sum_probs=78.7
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----CCC-cEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----GLV-PLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g~v-~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.+|..++.. +++++++ |+++.|.+.+.++ |.- .+...+.... .+.+.||+|.+..++|+.
T Consensus 52 ~VLDlGCG~GplAl~l~~~~p~a~~~A~--Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHlL 128 (200)
T 3fzg_A 52 SILDFGCGFNPLALYQWNENEKIIYHAY--DIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPVL 128 (200)
T ss_dssp EEEEETCTTHHHHHHHHCSSCCCEEEEE--CSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHHH
T ss_pred eEEEecCCCCHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHhh
Confidence 3599999999999999776 6777765 4557887766532 432 3444443333 467899999999999887
Q ss_pred cChhhHHHHHHHHHhhhCCCC------------CcchhhhhHHHHHHhhCCceeeEEeecCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG------------KASDLENVYGPLIGKLGYKKVKWATANKP 346 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG------------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~ 346 (365)
++ .+.++.++.+.||||| ..+.+.+.|...+++.= ..--|.+.++.
T Consensus 129 -~~--~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~-~~~~~~~~~~~ 186 (200)
T 3fzg_A 129 -KQ--QDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFT-KGWIKILDSKV 186 (200)
T ss_dssp -HH--TTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHT-TTTSCEEEEEE
T ss_pred -hh--hHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhc-cCcceeeeeee
Confidence 33 2357789999999999 12234556777776543 33344445543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-09 Score=93.97 Aligned_cols=82 Identities=18% Similarity=0.047 Sum_probs=60.7
Q ss_pred eEEEEcCcccHHHHHHhhcC---CeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCC-CCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYN---ITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLF-DGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g---v~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~-D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..+++.+ ..++++++ +..+.+.+.++ | .+.+..+++.. +++ +++||+|++..++
T Consensus 80 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~v~~~~~~ 156 (215)
T 2yxe_A 80 KVLEIGTGCGYHAAVTAEIVGEDGLVVSIER--IPELAEKAERTLRKLGYDNVIVIVGDGTL-GYEPLAPYDRIYTTAAG 156 (215)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHHTCTTEEEEESCGGG-CCGGGCCEEEEEESSBB
T ss_pred EEEEECCCccHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHcCCCCeEEEECCccc-CCCCCCCeeEEEECCch
Confidence 45999999999999998874 67776544 46666555442 3 25667777643 333 7899999999998
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++. .++.|+|||||
T Consensus 157 ~~~~---------~~~~~~L~pgG 171 (215)
T 2yxe_A 157 PKIP---------EPLIRQLKDGG 171 (215)
T ss_dssp SSCC---------HHHHHTEEEEE
T ss_pred HHHH---------HHHHHHcCCCc
Confidence 7643 37899999999
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-09 Score=103.25 Aligned_cols=91 Identities=14% Similarity=0.045 Sum_probs=57.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccC-C-ChhHHHHHH--Hc--CCCcEEec-cCCCCCCCCCccceeEEcchhh--
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMN-L-GAPYSEAAA--LR--GLVPLHVP-LQQRLPLFDGVLDVVRCGHAVN-- 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ld-l-~~~~~e~a~--~R--g~v~~~~g-~ae~LPF~D~SFDlV~s~~~L~-- 294 (365)
.|||||||+|.++..+++++ .|+++++. + +..+.+.+. .. ..+.+..+ ++..+| +++||+|+|..+.+
T Consensus 85 ~VLDlGcG~G~~s~~la~~~-~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~~~~g 161 (305)
T 2p41_A 85 KVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIGESSP 161 (305)
T ss_dssp EEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCCCCCS
T ss_pred EEEEEcCCCCHHHHHHHhcC-CEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEECCccccC
Confidence 46999999999999999884 56654440 0 111101111 11 23567777 776665 57999999976542
Q ss_pred ccc-ChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWI-PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~-d~~~le~aL~Ei~RVLRPGG 317 (365)
+|. +....-.+|.++.|+|||||
T Consensus 162 ~~~~d~~~~l~~L~~~~~~LkpGG 185 (305)
T 2p41_A 162 NPTVEAGRTLRVLNLVENWLSNNT 185 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred cchhhHHHHHHHHHHHHHHhCCCC
Confidence 232 11111147899999999999
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-09 Score=93.79 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=62.3
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCC-CCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQR-LPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~-LPF~D~SFDlV~s~~~ 292 (365)
.+||||||+|..+..|++. +..|++++ ++..+.+.+.+ .| .+.++.+++.. +|+.++ ||+|++...
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~ 135 (210)
T 3c3p_A 59 LVVVPGDGLGCASWWFARAISISSRVVMID--PDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD 135 (210)
T ss_dssp EEEEESCGGGHHHHHHHTTSCTTCEEEEEE--SCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred EEEEEcCCccHHHHHHHHhCCCCCEEEEEE--CCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence 4599999999999999886 56777654 44666655443 23 36688887754 476677 999998743
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
. . ....++.++.|+|||||
T Consensus 136 ~---~---~~~~~l~~~~~~LkpgG 154 (210)
T 3c3p_A 136 V---F---NGADVLERMNRCLAKNA 154 (210)
T ss_dssp T---S---CHHHHHHHHGGGEEEEE
T ss_pred h---h---hhHHHHHHHHHhcCCCe
Confidence 2 1 23468999999999999
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.3e-10 Score=111.29 Aligned_cols=85 Identities=15% Similarity=0.024 Sum_probs=63.6
Q ss_pred eEEEEcCc------ccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCC------CCccceeE
Q 017839 224 LGIDVGGA------TGSFAARMKLY---NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLF------DGVLDVVR 288 (365)
Q Consensus 224 i~LDIGCG------tG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~------D~SFDlV~ 288 (365)
.||||||| ||..+..|+++ +..|++++++ ..|. .....+.+++++++++||. +++||+|+
T Consensus 219 rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiS--p~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVi 293 (419)
T 3sso_A 219 RVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIM--DKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDIVI 293 (419)
T ss_dssp EEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESS--CCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred EEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECC--HHHh---hcCCCcEEEEecccccchhhhhhcccCCccEEE
Confidence 34999999 66666666653 5788876665 3341 2233578999999999998 89999999
Q ss_pred EcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|..+ ++|. +...+|.|++|+|||||
T Consensus 294 sdgs-H~~~---d~~~aL~el~rvLKPGG 318 (419)
T 3sso_A 294 DDGS-HINA---HVRTSFAALFPHVRPGG 318 (419)
T ss_dssp ECSC-CCHH---HHHHHHHHHGGGEEEEE
T ss_pred ECCc-ccch---hHHHHHHHHHHhcCCCe
Confidence 8754 4443 34579999999999999
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-09 Score=96.16 Aligned_cols=88 Identities=9% Similarity=-0.044 Sum_probs=64.4
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC--CCcEEeccCCC-CCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQR-LPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~-LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++++. .|+++ |++..+.+.+.+ .+ .+.++.+++.. +|+.+++||+|++...+ +
T Consensus 57 ~vLDlgcG~G~~~~~l~~~~~~~V~~v--D~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~-~ 133 (202)
T 2fpo_A 57 QCLDCFAGSGALGLEALSRYAAGATLI--EMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF-R 133 (202)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS-S
T ss_pred eEEEeCCCcCHHHHHHHhcCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC-C
Confidence 459999999999998887774 67764 555677665543 23 36788888766 68888999999998764 3
Q ss_pred ccChhhHHHHHHHHHh--hhCCCC
Q 017839 296 WIPVIMMEFLFYDVDR--VLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~R--VLRPGG 317 (365)
+. ..+.++.++.+ +|||||
T Consensus 134 ~~---~~~~~l~~l~~~~~L~pgG 154 (202)
T 2fpo_A 134 RG---LLEETINLLEDNGWLADEA 154 (202)
T ss_dssp TT---THHHHHHHHHHTTCEEEEE
T ss_pred CC---cHHHHHHHHHhcCccCCCc
Confidence 32 23457777754 699999
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.83 E-value=9.5e-10 Score=93.09 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=61.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cC-CCcEEeccCCC-CCCC---CCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RG-LVPLHVPLQQR-LPLF---DGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg-~v~~~~g~ae~-LPF~---D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|.++..+++++..+++ +|++..+.+.+.+ .+ .+.++.+++.. ++.. +++||+|++...++
T Consensus 44 ~vLD~GcG~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 44 RFLDPFAGSGAVGLEAASEGWEAVL--VEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTCEEEE--ECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred eEEEeCCCcCHHHHHHHHCCCeEEE--EeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 4599999999999999998877766 4555666655543 23 36778787655 3322 34899999987664
Q ss_pred cccChhhHHHHHHHHH--hhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVD--RVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~--RVLRPGG 317 (365)
.... ..+.++. |+|||||
T Consensus 122 --~~~~---~~~~~~~~~~~L~~gG 141 (171)
T 1ws6_A 122 --MDLA---ALFGELLASGLVEAGG 141 (171)
T ss_dssp --SCTT---HHHHHHHHHTCEEEEE
T ss_pred --hhHH---HHHHHHHhhcccCCCc
Confidence 2222 3555565 9999999
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=89.62 Aligned_cols=103 Identities=13% Similarity=0.023 Sum_probs=71.1
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEcchhhcccChhh
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIM 301 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~ 301 (365)
.+||+|||+|.++..+++.|. .|++++ ++..+.+.+.++- .+.++.+++..+| ++||+|++...++++.+..
T Consensus 54 ~vlD~gcG~G~~~~~l~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~- 127 (200)
T 1ne2_A 54 SVIDAGTGNGILACGSYLLGAESVTAFD--IDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHS- 127 (200)
T ss_dssp EEEEETCTTCHHHHHHHHTTBSEEEEEE--SCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC--------
T ss_pred EEEEEeCCccHHHHHHHHcCCCEEEEEE--CCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCch-
Confidence 459999999999999998864 577654 4567777666543 4678899988876 7999999999887665422
Q ss_pred HHHHHHHHHhhhCCCC----CcchhhhhHHHHHHhhC
Q 017839 302 MEFLFYDVDRVLRGGG----KASDLENVYGPLIGKLG 334 (365)
Q Consensus 302 le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~~g 334 (365)
...++.++.|+| |+ ......+....+++..|
T Consensus 128 ~~~~l~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 128 DRAFIDKAFETS--MWIYSIGNAKARDFLRREFSARG 162 (200)
T ss_dssp CHHHHHHHHHHE--EEEEEEEEGGGHHHHHHHHHHHE
T ss_pred hHHHHHHHHHhc--CcEEEEEcCchHHHHHHHHHHCC
Confidence 236899999999 56 22222233556777777
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-09 Score=96.47 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=61.3
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCC-CCCCC-----Ccccee
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQR-LPLFD-----GVLDVV 287 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~-LPF~D-----~SFDlV 287 (365)
.+||||||+|.++..|++. +..|+++++ +..+.+.+.++ | .+.++.+++.. +|..+ ++||+|
T Consensus 67 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 67 KVIDIGTFTGYSAIAMGLALPKDGTLITCDV--DEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp EEEEECCTTSHHHHHHHTTCCTTCEEEEEES--CHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred EEEEeCCcchHHHHHHHHhCCCCCEEEEEeC--CHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 4599999999999999986 677776554 45666554432 3 36678887633 33222 899999
Q ss_pred EEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 288 RCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 288 ~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++.... .....++.++.|+|||||
T Consensus 145 ~~~~~~------~~~~~~l~~~~~~L~pgG 168 (225)
T 3tr6_A 145 YIDADK------ANTDLYYEESLKLLREGG 168 (225)
T ss_dssp EECSCG------GGHHHHHHHHHHHEEEEE
T ss_pred EECCCH------HHHHHHHHHHHHhcCCCc
Confidence 965432 224468999999999999
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.3e-09 Score=101.69 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=63.9
Q ss_pred EEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 225 GIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
+||+|||+|.++..+++++ ..++++++ +..+.+.+.+ .+. +.++.++... +.+++||+|+++..+++-.
T Consensus 200 VLDlGcG~G~~~~~la~~~~~~~v~~vD~--s~~~l~~a~~~~~~~~~~~~~~~~d~~~--~~~~~fD~Iv~~~~~~~g~ 275 (343)
T 2pjd_A 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDV--SAPAVEASRATLAANGVEGEVFASNVFS--EVKGRFDMIISNPPFHDGM 275 (343)
T ss_dssp CCBTTCTTSHHHHHHHHHCTTCBCEEEES--BHHHHHHHHHHHHHTTCCCEEEECSTTT--TCCSCEEEEEECCCCCSSS
T ss_pred EEEecCccCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHhCCCCEEEEccccc--cccCCeeEEEECCCcccCc
Confidence 4999999999999999875 46776544 4556555443 232 3456666544 4588999999998875311
Q ss_pred --ChhhHHHHHHHHHhhhCCCC
Q 017839 298 --PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 --d~~~le~aL~Ei~RVLRPGG 317 (365)
.....+.++.++.|+|||||
T Consensus 276 ~~~~~~~~~~l~~~~~~LkpgG 297 (343)
T 2pjd_A 276 QTSLDAAQTLIRGAVRHLNSGG 297 (343)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCc
Confidence 12345689999999999999
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.9e-09 Score=101.45 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=85.6
Q ss_pred eEEEEcCcccHHHHHHhhcCC--eEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYNI--TILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv--~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||+|.++..++..+. .|+++++ +..+.+.+.+ .| .+.+..+++..+|+++++||+|+++-.+.
T Consensus 220 ~vLD~gCGsG~~~i~~a~~~~~~~v~g~Di--s~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg 297 (373)
T 3tm4_A 220 SVLDPMCGSGTILIELALRRYSGEIIGIEK--YRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG 297 (373)
T ss_dssp CEEETTCTTCHHHHHHHHTTCCSCEEEEES--CHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC
T ss_pred EEEEccCcCcHHHHHHHHhCCCCeEEEEeC--CHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCC
Confidence 359999999999999999875 7887555 4666655543 34 36889999999999999999999965432
Q ss_pred ccc-C---h-hhHHHHHHHHHhhhCCCC---CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeecCCC
Q 017839 295 RWI-P---V-IMMEFLFYDVDRVLRGGG---KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKPVS 364 (365)
Q Consensus 295 ~w~-d---~-~~le~aL~Ei~RVLRPGG---~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~KP~~ 364 (365)
... . . .....++.++.|+| +|+ .... .+.+...+++.||+..+-...... .+ -.-++|+|..
T Consensus 298 ~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~-~~~~~~~~~~~G~~~~~~~~~~nG-----~l-~~~~~~~~~~ 367 (373)
T 3tm4_A 298 LKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTE-KKAIEEAIAENGFEIIHHRVIGHG-----GL-MVHLYVVKLE 367 (373)
T ss_dssp ------CCHHHHHHHHHHHHHHHE-EEEEEEEESC-HHHHHHHHHHTTEEEEEEEEEEET-----TE-EEEEEEEEET
T ss_pred cccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECC-HHHHHHHHHHcCCEEEEEEEEEcC-----CE-EEEEEeccCc
Confidence 111 0 1 11256889999999 333 1111 223556888999987654433321 11 1456776643
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-09 Score=97.20 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=61.6
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cC----CCcEEeccCCC-CC-CCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RG----LVPLHVPLQQR-LP-LFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg----~v~~~~g~ae~-LP-F~D~SFDlV~s~ 290 (365)
.+||||||+|..+..|++. +..|+++ |.+..+.+.+.+ .| .+.++.+++.. ++ +.+++||+|++.
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCI--DPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEE--CSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 4599999999999999874 5677764 445666655433 23 35677887654 33 448999999986
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.... ....++.++.|+|||||
T Consensus 137 ~~~~------~~~~~l~~~~~~LkpGG 157 (221)
T 3dr5_A 137 VSPM------DLKALVDAAWPLLRRGG 157 (221)
T ss_dssp CCTT------THHHHHHHHHHHEEEEE
T ss_pred CcHH------HHHHHHHHHHHHcCCCc
Confidence 5332 23358999999999999
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=97.85 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=57.6
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc-----------------CCCcEEeccCCCC--CCCC
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR-----------------GLVPLHVPLQQRL--PLFD 281 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R-----------------g~v~~~~g~ae~L--PF~D 281 (365)
.|||||||+|.++..+++. | ..|+++++ +..+.+.+.++ ..+.+..+++..+ ++++
T Consensus 108 ~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (336)
T 2b25_A 108 TVLEAGSGSGGMSLFLSKAVGSQGRVISFEV--RKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS 185 (336)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEES--SHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred EEEEeCCCcCHHHHHHHHHhCCCceEEEEeC--CHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCC
Confidence 4599999999999999986 5 67776544 45665554431 2467888888776 6788
Q ss_pred CccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 282 GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 282 ~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++||+|++... ..| .++.++.|+|||||
T Consensus 186 ~~fD~V~~~~~-~~~-------~~l~~~~~~LkpgG 213 (336)
T 2b25_A 186 LTFDAVALDML-NPH-------VTLPVFYPHLKHGG 213 (336)
T ss_dssp --EEEEEECSS-STT-------TTHHHHGGGEEEEE
T ss_pred CCeeEEEECCC-CHH-------HHHHHHHHhcCCCc
Confidence 89999998532 111 36889999999999
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.8e-09 Score=102.81 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=65.4
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChh-HHHHHHHcC---CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAP-YSEAAALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~-~~e~a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
++|||||||||.++...++.|+ .|++++.+.... ..+.+...| .+.++.++.+.+.++ +.||+|+|-..-....
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~ 163 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLL 163 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBT
T ss_pred CEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccccc
Confidence 4679999999999988888885 577765542111 112233344 367888999988876 6899999844322222
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
....+..++...+|.|||||
T Consensus 164 ~e~~l~~~l~a~~r~Lkp~G 183 (376)
T 4hc4_A 164 HESMLSSVLHARTKWLKEGG 183 (376)
T ss_dssp TTCSHHHHHHHHHHHEEEEE
T ss_pred ccchhhhHHHHHHhhCCCCc
Confidence 23356778899999999999
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-08 Score=100.12 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=74.6
Q ss_pred eEEEEcCcccHHHHHHhhc--C-CeEEEeccCCChhHHHHHHHc----CC--CcEEeccCCCCC--CCCCccceeEE---
Q 017839 224 LGIDVGGATGSFAARMKLY--N-ITILTTTMNLGAPYSEAAALR----GL--VPLHVPLQQRLP--LFDGVLDVVRC--- 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--g-v~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g~ae~LP--F~D~SFDlV~s--- 289 (365)
.|||+|||+|..+..+++. + ..|++. |++..+.+.+.++ |. +.++.+++..++ |++++||+|++
T Consensus 262 ~VLDlgaG~G~~t~~la~~~~~~~~v~a~--D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~P 339 (450)
T 2yxl_A 262 TVVDLAAAPGGKTTHLAELMKNKGKIYAF--DVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAP 339 (450)
T ss_dssp EEEESSCTTCHHHHHHHHHTTTCSEEEEE--CSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECC
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEE--cCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCC
Confidence 4599999999999999884 3 577764 4556665544332 54 567778888887 77789999996
Q ss_pred --c-chhhcccCh------hhH-------HHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCcee
Q 017839 290 --G-HAVNRWIPV------IMM-------EFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYKKV 338 (365)
Q Consensus 290 --~-~~L~~w~d~------~~l-------e~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk~i 338 (365)
+ .++++..+. .+. ..+|.++.++||||| ..++.++....++++. +|+.+
T Consensus 340 csg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~ 414 (450)
T 2yxl_A 340 CTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLV 414 (450)
T ss_dssp CCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEEC
T ss_pred CCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEe
Confidence 2 233221110 111 468999999999999 2233344556667765 67654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.4e-09 Score=92.85 Aligned_cols=86 Identities=14% Similarity=0.046 Sum_probs=61.2
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCC-CC-CC---CCccceeE
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQR-LP-LF---DGVLDVVR 288 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~-LP-F~---D~SFDlV~ 288 (365)
.+||||||+|.++..|++. +..++++++ +..+.+.+.+ .|. +.++.+++.. +| +. +++||+|+
T Consensus 61 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEA--SEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp EEEEECCTTSHHHHHHHTTCCSSCEEEEEES--CHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred EEEEecCCccHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 3599999999999999987 678877554 4556555433 243 6678887643 22 11 26799999
Q ss_pred EcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+..... ....++.++.|+|||||
T Consensus 139 ~d~~~~------~~~~~l~~~~~~L~pgG 161 (223)
T 3duw_A 139 IDADKQ------NNPAYFEWALKLSRPGT 161 (223)
T ss_dssp ECSCGG------GHHHHHHHHHHTCCTTC
T ss_pred EcCCcH------HHHHHHHHHHHhcCCCc
Confidence 875432 23468999999999999
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.8e-09 Score=95.10 Aligned_cols=82 Identities=18% Similarity=0.079 Sum_probs=60.6
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHc----CC--CcEEeccCCCCCCCCCc-cceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALR----GL--VPLHVPLQQRLPLFDGV-LDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g~ae~LPF~D~S-FDlV~s~~~L~~ 295 (365)
.+||||||+|.++..+++.+ ..|+++++ +..+.+.+.++ |. +.+..+++ ..+++++. ||+|++..++++
T Consensus 94 ~vLdiG~G~G~~~~~la~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~ 170 (235)
T 1jg1_A 94 NILEVGTGSGWNAALISEIVKTDVYTIER--IPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAGAPK 170 (235)
T ss_dssp CEEEECCTTSHHHHHHHHHHCSCEEEEES--CHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSBBSS
T ss_pred EEEEEeCCcCHHHHHHHHHhCCEEEEEeC--CHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCcHHH
Confidence 35999999999999999875 67776544 45565555432 32 56677776 56776665 999999998865
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. .++.|+|||||
T Consensus 171 ~~---------~~~~~~L~pgG 183 (235)
T 1jg1_A 171 IP---------EPLIEQLKIGG 183 (235)
T ss_dssp CC---------HHHHHTEEEEE
T ss_pred HH---------HHHHHhcCCCc
Confidence 43 26899999999
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-08 Score=97.30 Aligned_cols=135 Identities=9% Similarity=0.033 Sum_probs=82.3
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCC--CCCCccceeEE----c
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLP--LFDGVLDVVRC----G 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LP--F~D~SFDlV~s----~ 290 (365)
.|||+|||+|..+..+++.+ ..|++.+++ ..+.+.+.+ .|. +.++.+++..++ |++++||+|++ +
T Consensus 249 ~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~--~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 326 (429)
T 1sqg_A 249 HILDLCAAPGGKTTHILEVAPEAQVVAVDID--EQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCS 326 (429)
T ss_dssp EEEEESCTTCHHHHHHHHHCTTCEEEEEESS--TTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCC
T ss_pred eEEEECCCchHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCC
Confidence 45999999999999999864 577776554 444444332 243 567778888887 77889999985 2
Q ss_pred --chhhcccC------hhhH-------HHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCceee------
Q 017839 291 --HAVNRWIP------VIMM-------EFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYKKVK------ 339 (365)
Q Consensus 291 --~~L~~w~d------~~~l-------e~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk~i~------ 339 (365)
.++++-.+ ..++ ..+|.++.++||||| ..++.++.....+++. +|+.+.
T Consensus 327 g~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~~~~~~~~~ 406 (429)
T 1sqg_A 327 ATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQ 406 (429)
T ss_dssp CGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECSSBCSSS
T ss_pred cccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEEeCCCCCCC
Confidence 22222111 0111 367999999999999 2233344455566554 465443
Q ss_pred --EEeecCCCCCCCceEEEEeeecC
Q 017839 340 --WATANKPNSKNGEVYLTALLQKP 362 (365)
Q Consensus 340 --w~v~~K~d~~~~~~y~sall~KP 362 (365)
+.+-...+ +.++.|+ |+|+|.
T Consensus 407 ~~~~~~P~~~-~~dGff~-a~l~k~ 429 (429)
T 1sqg_A 407 PGKQNLPGAE-EGDGFFY-AKLIKK 429 (429)
T ss_dssp BSEEECCCTT-SCCSEEE-EEEEC-
T ss_pred CeEEECCCCC-CCCceEE-EEEEEC
Confidence 22222111 2344444 999883
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.6e-09 Score=93.99 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=62.5
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc-----------CCCcEEeccCCCCCCCCCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR-----------GLVPLHVPLQQRLPLFDGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R-----------g~v~~~~g~ae~LPF~D~SFDlV~s 289 (365)
.+||||||+|.++..+++. | ..|++++ ++..+.+.+.++ ..+.+..+++...++.++.||+|++
T Consensus 80 ~vLDiG~G~G~~~~~la~~~~~~~~v~~vD--~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~ 157 (226)
T 1i1n_A 80 KALDVGSGSGILTACFARMVGCTGKVIGID--HIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 157 (226)
T ss_dssp EEEEETCTTSHHHHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred EEEEEcCCcCHHHHHHHHHhCCCcEEEEEe--CCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEE
Confidence 4599999999999999876 4 5777654 446665554321 2466788888777777889999999
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
...+++. +.++.|+|||||
T Consensus 158 ~~~~~~~---------~~~~~~~LkpgG 176 (226)
T 1i1n_A 158 GAAAPVV---------PQALIDQLKPGG 176 (226)
T ss_dssp CSBBSSC---------CHHHHHTEEEEE
T ss_pred CCchHHH---------HHHHHHhcCCCc
Confidence 8877543 357899999999
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=103.22 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=60.5
Q ss_pred eEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHH-------H----HcC----CCcEEeccCCCC--CC--CCC
Q 017839 224 LGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAA-------A----LRG----LVPLHVPLQQRL--PL--FDG 282 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a-------~----~Rg----~v~~~~g~ae~L--PF--~D~ 282 (365)
.|||||||+|.++..+++. + ..|+|++++ ..+.+.+ . ..| .+.++.+++... +| .++
T Consensus 245 ~VLDLGCGsG~la~~LA~~~g~~~V~GVDis--~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~ 322 (433)
T 1u2z_A 245 TFMDLGSGVGNCVVQAALECGCALSFGCEIM--DDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP 322 (433)
T ss_dssp EEEEESCTTSHHHHHHHHHHCCSEEEEEECC--HHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGG
T ss_pred EEEEeCCCcCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccC
Confidence 4699999999999999985 5 467775544 4443333 2 224 345666654322 33 368
Q ss_pred ccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 283 VLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+||+|+++.++ + .+ .+..+|.|+.|+|||||
T Consensus 323 ~FDvIvvn~~l-~-~~--d~~~~L~el~r~LKpGG 353 (433)
T 1u2z_A 323 QCDVILVNNFL-F-DE--DLNKKVEKILQTAKVGC 353 (433)
T ss_dssp GCSEEEECCTT-C-CH--HHHHHHHHHHTTCCTTC
T ss_pred CCCEEEEeCcc-c-cc--cHHHHHHHHHHhCCCCe
Confidence 99999998766 2 22 34578999999999999
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-08 Score=95.84 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=77.0
Q ss_pred eEEEEcC------cccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHcCCCcE-EeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGG------ATGSFAARMKLY---NITILTTTMNLGAPYSEAAALRGLVPL-HVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGC------GtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~Rg~v~~-~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.|||+|| |+|+ ..++++ +..|++++++. . + ..+.+ +++++..+++. ++||+|+|....
T Consensus 66 ~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~--~----v---~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~ 133 (290)
T 2xyq_A 66 RVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLND--F----V---SDADSTLIGDCATVHTA-NKWDLIISDMYD 133 (290)
T ss_dssp EEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSC--C----B---CSSSEEEESCGGGCCCS-SCEEEEEECCCC
T ss_pred EEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCC--C----C---CCCEEEEECccccCCcc-CcccEEEEcCCc
Confidence 3599999 5576 333332 46788766653 2 1 23678 99999998875 789999996432
Q ss_pred h---ccc-----ChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEe
Q 017839 294 N---RWI-----PVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTAL 358 (365)
Q Consensus 294 ~---~w~-----d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sal 358 (365)
. ++. .....+.++.++.|+||||| ...+.. .+..++++.||..++.. +.+. +..|.|+-+.
T Consensus 134 ~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~-~l~~~l~~~GF~~v~~~-asr~--~s~e~~lv~~ 209 (290)
T 2xyq_A 134 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNA-DLYKLMGHFSWWTAFVT-NVNA--SSSEAFLIGA 209 (290)
T ss_dssp CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCH-HHHHHHTTEEEEEEEEE-GGGT--TSSCEEEEEE
T ss_pred cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHH-HHHHHHHHcCCcEEEEE-EcCC--CchheEEecC
Confidence 1 111 11224578999999999999 222222 36678889999887766 2222 2477787543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.4e-09 Score=94.98 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=61.6
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----CC---CcEEeccCCC-CC--------------
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----GL---VPLHVPLQQR-LP-------------- 278 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g~---v~~~~g~ae~-LP-------------- 278 (365)
.|||||||+|.++..+++. +..++++++ +..+.+.+.++ |. +.++.+++.. +|
T Consensus 63 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 63 RIIEIGTFTGYSSLCFASALPEDGKILCCDV--SEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp EEEEECCTTCHHHHHHHHHSCTTCEEEEEES--CHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred EEEEEeCCCCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 4599999999999999986 567776554 45565554432 43 5677776533 22
Q ss_pred CCC--CccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 279 LFD--GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 279 F~D--~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|++ ++||+|++.....+ ...++.++.|+|||||
T Consensus 141 f~~~~~~fD~I~~~~~~~~------~~~~l~~~~~~L~pgG 175 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDADKEN------YPNYYPLILKLLKPGG 175 (239)
T ss_dssp TCCSTTCEEEEEECSCGGG------HHHHHHHHHHHEEEEE
T ss_pred ccCCCCCcCEEEEeCCHHH------HHHHHHHHHHHcCCCe
Confidence 454 89999998765432 3468999999999999
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.73 E-value=6.6e-08 Score=85.06 Aligned_cols=106 Identities=8% Similarity=0.055 Sum_probs=74.9
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||+|||+|.++..+++.|. .+++++ ++..+.+.+.++ + .+.++.+++..+| ++||+|++.-.++.+.
T Consensus 52 ~vlD~g~G~G~~~~~l~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 52 VVADLGAGTGVLSYGALLLGAKEVICVE--VDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQR 126 (207)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSSS
T ss_pred EEEEeeCCCCHHHHHHHHcCCCEEEEEE--CCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcccc
Confidence 469999999999999998864 577654 456666665543 3 3667888888875 4899999988775543
Q ss_pred ChhhHHHHHHHHHhhhCCCC----C--cchhhhhHHHHHHhhCCce
Q 017839 298 PVIMMEFLFYDVDRVLRGGG----K--ASDLENVYGPLIGKLGYKK 337 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG----~--~~~l~~~~~~~l~~~gfk~ 337 (365)
.. .....+.++.|+| || . .+...+.....+++.||+.
T Consensus 127 ~~-~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 169 (207)
T 1wy7_A 127 KH-ADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVV 169 (207)
T ss_dssp TT-TTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEE
T ss_pred CC-chHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence 22 2346789999999 66 2 3333334556788899854
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-08 Score=93.40 Aligned_cols=103 Identities=8% Similarity=0.061 Sum_probs=67.0
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCC-
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFD- 281 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D- 281 (365)
.++.+++.....++ ..+||||||+|.++..+++++..|++++ ++..+.+.+.++ +.+.++.+++.++||++
T Consensus 18 ~~~~i~~~~~~~~~--~~VLDiG~G~G~lt~~l~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 18 NIDKIMTNIRLNEH--DNIFEIGSGKGHFTLELVQRCNFVTAIE--IDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHHTTCCCCTT--CEEEEECCTTSHHHHHHHHHSSEEEEEC--SCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhCCCCCC--CEEEEEeCCchHHHHHHHHcCCeEEEEE--CCHHHHHHHHHhhccCCCeEEEEChHHhCCcccC
Confidence 34555543322113 3469999999999999999988888754 456777666553 34678889999999985
Q ss_pred CccceeEEcc-----------hhhcccChhhHHHHH---HH-HHhhhCCCC
Q 017839 282 GVLDVVRCGH-----------AVNRWIPVIMMEFLF---YD-VDRVLRGGG 317 (365)
Q Consensus 282 ~SFDlV~s~~-----------~L~~w~d~~~le~aL---~E-i~RVLRPGG 317 (365)
..|| |+++- .++|+.... .++ +| +.|+|+|||
T Consensus 94 ~~~~-vv~nlPy~~~~~~l~~~l~~~~~~~---~~lm~q~e~a~rll~~~G 140 (244)
T 1qam_A 94 QSYK-IFGNIPYNISTDIIRKIVFDSIADE---IYLIVEYGFAKRLLNTKR 140 (244)
T ss_dssp CCCE-EEEECCGGGHHHHHHHHHHSCCCSE---EEEEEEHHHHHHHTCTTS
T ss_pred CCeE-EEEeCCcccCHHHHHHHHhcCCCCe---EEEEEEHHHHHHHhcCCc
Confidence 4564 44432 222332211 123 35 899999998
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=91.63 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=59.9
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHH----cCCCcEEeccCCCC---CCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAAL----RGLVPLHVPLQQRL---PLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~----Rg~v~~~~g~ae~L---PF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..++++ | ..|+++ |.+..+.+.+.+ ...+.++.+++... +..+++||+|++...
T Consensus 76 ~vLDlG~G~G~~~~~la~~~~~~~~v~~v--D~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~- 152 (227)
T 1g8a_A 76 SVLYLGIASGTTASHVSDIVGWEGKIFGI--EFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA- 152 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC-
T ss_pred EEEEEeccCCHHHHHHHHHhCCCeEEEEE--ECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC-
Confidence 4599999999999999876 3 577765 444555443322 23466788887662 223468999997654
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+ ...+.++.++.|+|||||
T Consensus 153 ---~~-~~~~~~l~~~~~~LkpgG 172 (227)
T 1g8a_A 153 ---QP-TQAKILIDNAEVYLKRGG 172 (227)
T ss_dssp ---ST-THHHHHHHHHHHHEEEEE
T ss_pred ---CH-hHHHHHHHHHHHhcCCCC
Confidence 11 123345999999999999
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.7e-09 Score=92.94 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=62.7
Q ss_pred eEEEEcCcccHHHHHHhhcC-------CeEEEeccCCChhHHHHHHHc----C-------CCcEEeccCCCCC----CCC
Q 017839 224 LGIDVGGATGSFAARMKLYN-------ITILTTTMNLGAPYSEAAALR----G-------LVPLHVPLQQRLP----LFD 281 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-------v~Vv~~~ldl~~~~~e~a~~R----g-------~v~~~~g~ae~LP----F~D 281 (365)
.+||||||+|.++..+++.. ..|+++++ +..+.+.+.++ + .+.+..+++...+ +.+
T Consensus 83 ~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 160 (227)
T 2pbf_A 83 RAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLER--VKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKEL 160 (227)
T ss_dssp EEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEES--CHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeC--CHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccC
Confidence 45999999999999998864 37776554 45665554432 3 3677888887766 678
Q ss_pred CccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 282 GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 282 ~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.||+|++..++++. +.++.++|||||
T Consensus 161 ~~fD~I~~~~~~~~~---------~~~~~~~LkpgG 187 (227)
T 2pbf_A 161 GLFDAIHVGASASEL---------PEILVDLLAENG 187 (227)
T ss_dssp CCEEEEEECSBBSSC---------CHHHHHHEEEEE
T ss_pred CCcCEEEECCchHHH---------HHHHHHhcCCCc
Confidence 899999999887543 357899999999
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-08 Score=98.17 Aligned_cols=92 Identities=10% Similarity=0.037 Sum_probs=63.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC----CcEEeccCCCCCC----CCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQQRLPL----FDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~ae~LPF----~D~SFDlV~s~~ 291 (365)
.+||+|||+|.++..+++.|..|+++ |++..+.+.+.+ .++ +.++.+++..+.. .+++||+|++.-
T Consensus 156 ~VLDlgcGtG~~sl~la~~ga~V~~V--D~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 156 KVLNLFGYTGVASLVAAAAGAEVTHV--DASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEEE--CSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred cEEEcccccCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 45999999999999999988877764 555666665543 232 5678888765432 167999999832
Q ss_pred h---hh----cccChhhHHHHHHHHHhhhCCCC
Q 017839 292 A---VN----RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~---L~----~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
- .. .|........++.++.|+|||||
T Consensus 234 P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG 266 (332)
T 2igt_A 234 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKA 266 (332)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTC
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCc
Confidence 1 10 01111235578999999999999
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-08 Score=94.97 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=62.0
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCC-CCCC------CCccce
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQR-LPLF------DGVLDV 286 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~-LPF~------D~SFDl 286 (365)
.+||||||+|..+..|++. +..+++++++ ..+.+.+.+ .|. +.++.+++.. +|.. +++||+
T Consensus 82 ~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s--~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 82 NTMEIGVYTGYSLLATALAIPEDGKILAMDIN--KENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp EEEEECCGGGHHHHHHHHHSCTTCEEEEEESC--CHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred EEEEeCCCcCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 4599999999999999885 5778775554 455554432 343 5678887654 4532 689999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|++.... .....++.++.|+|||||
T Consensus 160 V~~d~~~------~~~~~~l~~~~~~LkpGG 184 (247)
T 1sui_A 160 IFVDADK------DNYLNYHKRLIDLVKVGG 184 (247)
T ss_dssp EEECSCS------TTHHHHHHHHHHHBCTTC
T ss_pred EEEcCch------HHHHHHHHHHHHhCCCCe
Confidence 9986432 123468999999999999
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.8e-08 Score=93.89 Aligned_cols=88 Identities=14% Similarity=0.170 Sum_probs=60.2
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C--CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G--LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||||||+|.++..|++++..|+++++ +..+.+.+.++ + .+.++.+++..+|+. +||+|+++... +|.
T Consensus 45 ~VLDiG~G~G~lt~~La~~~~~v~~vDi--~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~py-~~~ 119 (299)
T 2h1r_A 45 IVLEIGCGTGNLTVKLLPLAKKVITIDI--DSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANIPY-KIS 119 (299)
T ss_dssp EEEEECCTTSTTHHHHTTTSSEEEEECS--CHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEECCG-GGH
T ss_pred EEEEEcCcCcHHHHHHHhcCCEEEEEEC--CHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcCCc-ccc
Confidence 4699999999999999998888887554 46666655432 3 356778888888875 89999997654 554
Q ss_pred ChhhHHHHH---------------HHHHhhhCCCC
Q 017839 298 PVIMMEFLF---------------YDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL---------------~Ei~RVLRPGG 317 (365)
.+ .+...+ .++.|+++|+|
T Consensus 120 ~~-~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 120 SP-LIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp HH-HHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred cH-HHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 32 222333 34789999999
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-08 Score=93.00 Aligned_cols=125 Identities=13% Similarity=0.068 Sum_probs=76.6
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--C-CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--N-ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRL 277 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--g-v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~L 277 (365)
.+..+++..+ |. .|||+|||+|.++..+++. + ..|++.++ +..+.+.+.+ .|. +.++.+++..+
T Consensus 74 l~~~~l~~~~---g~--~VLDlgaG~G~~t~~la~~~~~~~~v~avD~--~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~ 146 (274)
T 3ajd_A 74 IPPIVLNPRE---DD--FILDMCAAPGGKTTHLAQLMKNKGTIVAVEI--SKTRTKALKSNINRMGVLNTIIINADMRKY 146 (274)
T ss_dssp HHHHHHCCCT---TC--EEEETTCTTCHHHHHHHHHTTTCSEEEEEES--CHHHHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred HHHHHhCCCC---cC--EEEEeCCCccHHHHHHHHHcCCCCEEEEECC--CHHHHHHHHHHHHHhCCCcEEEEeCChHhc
Confidence 3444555444 43 3599999999999999873 4 67776544 4556554433 243 56777888777
Q ss_pred CC----CCCccceeEEcc------hhhc---ccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhHHHH
Q 017839 278 PL----FDGVLDVVRCGH------AVNR---WIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVYGPL 329 (365)
Q Consensus 278 PF----~D~SFDlV~s~~------~L~~---w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~ 329 (365)
+. .++.||+|++.- ++++ |... .....++.++.|+||||| ..++.++....+
T Consensus 147 ~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~ 226 (274)
T 3ajd_A 147 KDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYI 226 (274)
T ss_dssp HHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHH
T ss_pred chhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHH
Confidence 65 378999999862 2210 1100 123568999999999999 223334445556
Q ss_pred HHh-hCCcee
Q 017839 330 IGK-LGYKKV 338 (365)
Q Consensus 330 l~~-~gfk~i 338 (365)
+++ -+|+.+
T Consensus 227 l~~~~~~~~~ 236 (274)
T 3ajd_A 227 LQKRNDVELI 236 (274)
T ss_dssp HHHCSSEEEE
T ss_pred HHhCCCcEEe
Confidence 644 345443
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=87.96 Aligned_cols=114 Identities=8% Similarity=-0.019 Sum_probs=79.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC--eEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYNI--TILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv--~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..+++.|. .|+++++ ++.+.+.+.+ .| .+.+..+++...+.+++.||+|+.....-
T Consensus 24 ~VlDIGtGsG~l~i~la~~~~~~~V~AvDi--~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmGg 101 (230)
T 3lec_A 24 RLLDVGSDHAYLPIFLLQMGYCDFAIAGEV--VNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMGG 101 (230)
T ss_dssp EEEEETCSTTHHHHHHHHTTCEEEEEEEES--SHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred EEEEECCchHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCch
Confidence 459999999999999999873 4665544 4555554432 34 37788888777666666899988655432
Q ss_pred cccChhhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHhhCCceeeEEeec
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
+.+...|.+..+.|+++| ....-.+....++...||..+.-.+..
T Consensus 102 -----~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~lv~ 150 (230)
T 3lec_A 102 -----RLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAANDFEIVAEDILT 150 (230)
T ss_dssp -----HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -----HHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHHCCCEEEEEEEEE
Confidence 124467889999999999 111113346678999999988766544
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-08 Score=94.73 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=61.6
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCC--hhHHHHHHHcC---CCcEEeccCCC-CCCC-----CCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLG--APYSEAAALRG---LVPLHVPLQQR-LPLF-----DGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~--~~~~e~a~~Rg---~v~~~~g~ae~-LPF~-----D~SFDlV~s 289 (365)
.|||||||+|..+..|++. +..|++++++.. ....+.+...| .+.++.+++.. ++.. +++||+|++
T Consensus 63 ~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~ 142 (242)
T 3r3h_A 63 KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFI 142 (242)
T ss_dssp EEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEE
T ss_pred EEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEE
Confidence 4599999999999999984 567877665521 11223344444 36788888755 3432 689999998
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..... ....++.++.|+|||||
T Consensus 143 d~~~~------~~~~~l~~~~~~LkpGG 164 (242)
T 3r3h_A 143 DADKT------NYLNYYELALKLVTPKG 164 (242)
T ss_dssp ESCGG------GHHHHHHHHHHHEEEEE
T ss_pred cCChH------HhHHHHHHHHHhcCCCe
Confidence 65421 23468999999999999
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-08 Score=92.00 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=61.8
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccC----CCCCCCC--Ccccee
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQ----QRLPLFD--GVLDVV 287 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~a----e~LPF~D--~SFDlV 287 (365)
.+||||||+|..+..|++. +..++++++ +..+.+.+.+ .|. +.++.+++ ..+++.+ ++||+|
T Consensus 75 ~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQ--DPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp EEEEECCTTSHHHHHHHTTSCTTCEEEEEES--CHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred EEEEecCCCCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 4599999999999999875 457776544 4566555443 233 56777764 3456655 899999
Q ss_pred EEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 288 RCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 288 ~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++..... ....++.++.|+|||||
T Consensus 153 ~~d~~~~------~~~~~l~~~~~~LkpgG 176 (232)
T 3cbg_A 153 FIDADKR------NYPRYYEIGLNLLRRGG 176 (232)
T ss_dssp EECSCGG------GHHHHHHHHHHTEEEEE
T ss_pred EECCCHH------HHHHHHHHHHHHcCCCe
Confidence 9865421 23468999999999999
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.3e-08 Score=99.32 Aligned_cols=125 Identities=17% Similarity=0.235 Sum_probs=79.7
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--C-CeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--N-ITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLP 278 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--g-v~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LP 278 (365)
.+..+++..+ |. + |||+|||+|..+..|+++ + ..|++. |++..+.+.+.+ .|. +.+..+++..++
T Consensus 92 l~a~~L~~~~---g~-~-VLDlgaGpG~kt~~LA~~~~~~g~V~Av--Dis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~ 164 (464)
T 3m6w_A 92 AVGVLLDPKP---GE-R-VLDLAAAPGGKTTHLAARMGGKGLLLAN--EVDGKRVRGLLENVERWGAPLAVTQAPPRALA 164 (464)
T ss_dssp HHHHHHCCCT---TC-E-EEESSCTTCHHHHHHHHHTTTCSEEEEE--CSCHHHHHHHHHHHHHHCCCCEEECSCHHHHH
T ss_pred HHHHhcCcCC---CC-E-EEEEcCCcCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCeEEEEECCHHHhh
Confidence 3445555444 43 4 599999999999999875 2 467764 555666655433 243 567778877776
Q ss_pred -CCCCccceeEE----cc--hhh-------cccChh------hHHHHHHHHHhhhCCCC---------CcchhhhhHHHH
Q 017839 279 -LFDGVLDVVRC----GH--AVN-------RWIPVI------MMEFLFYDVDRVLRGGG---------KASDLENVYGPL 329 (365)
Q Consensus 279 -F~D~SFDlV~s----~~--~L~-------~w~d~~------~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~ 329 (365)
+.+++||+|++ +. ++. .|.+.. ....+|.++.|+||||| ..++.+++...+
T Consensus 165 ~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~ 244 (464)
T 3m6w_A 165 EAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHF 244 (464)
T ss_dssp HHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred hhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHH
Confidence 56789999994 21 221 222211 11568999999999999 334445556667
Q ss_pred HHhh-CCcee
Q 017839 330 IGKL-GYKKV 338 (365)
Q Consensus 330 l~~~-gfk~i 338 (365)
+++. +|+.+
T Consensus 245 l~~~~~~~l~ 254 (464)
T 3m6w_A 245 LKAHPEFRLE 254 (464)
T ss_dssp HHHCTTEEEE
T ss_pred HHHCCCcEEE
Confidence 7776 46544
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-09 Score=99.17 Aligned_cols=88 Identities=8% Similarity=-0.003 Sum_probs=60.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCC-CccceeEEcc-------
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFD-GVLDVVRCGH------- 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D-~SFDlV~s~~------- 291 (365)
.+||||||+|.++..+++++..|+++++| ..+.+.+.++ ..+.++.+|+..+|+++ ++| .|+++-
T Consensus 32 ~VLDiG~G~G~~~~~l~~~~~~v~~id~~--~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~ 108 (245)
T 1yub_A 32 TVYEIGTGKGHLTTKLAKISKQVTSIELD--SHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLSTQ 108 (245)
T ss_dssp EEEECSCCCSSCSHHHHHHSSEEEESSSS--CSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCSSSCHH
T ss_pred EEEEEeCCCCHHHHHHHHhCCeEEEEECC--HHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCccccHH
Confidence 46999999999999999988888876554 3443333222 23567788999999884 789 566642
Q ss_pred ----hhhcccChhhHHHHH----HHHHhhhCCCC
Q 017839 292 ----AVNRWIPVIMMEFLF----YDVDRVLRGGG 317 (365)
Q Consensus 292 ----~L~~w~d~~~le~aL----~Ei~RVLRPGG 317 (365)
.+.|+.... ..+ .++.|+|||||
T Consensus 109 ~~~~~~~~~~~~~---~~lm~q~e~a~rll~~~G 139 (245)
T 1yub_A 109 IIKKVVFESRASD---IYLIVEEGFYKRTLDIHR 139 (245)
T ss_dssp HHHHHHHHCCCEE---EEEEEESSHHHHHHCGGG
T ss_pred HHHHHHhCCCCCe---EEEEeeHHHHHHHhCCCC
Confidence 122322211 234 56999999999
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-07 Score=87.68 Aligned_cols=114 Identities=8% Similarity=-0.041 Sum_probs=77.7
Q ss_pred eEEEEcCcccHHHHHHhhcCC--eEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYNI--TILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv--~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.+||||||+|.++..+++.+. .|+++++ ++.+.+.+.+ .|+ +.+..+++.....+++.||+|+.....-
T Consensus 24 ~VlDIGtGsG~l~i~la~~~~~~~V~avDi--~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg 101 (244)
T 3gnl_A 24 RIADIGSDHAYLPCFAVKNQTASFAIAGEV--VDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGG 101 (244)
T ss_dssp EEEEETCSTTHHHHHHHHTTSEEEEEEEES--SHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred EEEEECCccHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCch
Confidence 459999999999999999863 5665544 4555555443 343 6788888766655555799988654321
Q ss_pred cccChhhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHhhCCceeeEEeec
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
+.+...|.+..+.|+++| ....-.+....++...||..+.-.+..
T Consensus 102 -----~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~Gf~i~~E~lv~ 150 (244)
T 3gnl_A 102 -----TLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILR 150 (244)
T ss_dssp -----HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHHTEEEEEEEEEE
T ss_pred -----HHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHCCCEEEEEEEEE
Confidence 124467889999999999 111112346678999999877655444
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.1e-08 Score=92.17 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=62.7
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||+|||+|.++..+++++ ..|++++ +++.+.+.+.+ .|+ +.++.+++..+|. +++||+|++....
T Consensus 122 ~VLDlgcG~G~~s~~la~~~~~~~V~~vD--~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~-- 196 (272)
T 3a27_A 122 VVVDMFAGIGYFTIPLAKYSKPKLVYAIE--KNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH-- 196 (272)
T ss_dssp EEEETTCTTTTTHHHHHHHTCCSEEEEEE--CCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS--
T ss_pred EEEEecCcCCHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc--
Confidence 46999999999999999874 4777654 44566555433 233 4578888887765 7899999987643
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
....++.++.|+|||||
T Consensus 197 -----~~~~~l~~~~~~LkpgG 213 (272)
T 3a27_A 197 -----KTHKFLDKTFEFLKDRG 213 (272)
T ss_dssp -----SGGGGHHHHHHHEEEEE
T ss_pred -----cHHHHHHHHHHHcCCCC
Confidence 12357889999999999
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.7e-08 Score=95.67 Aligned_cols=107 Identities=11% Similarity=-0.006 Sum_probs=76.2
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----CC--CcEEeccCCC-CCC-CCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----GL--VPLHVPLQQR-LPL-FDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g~ae~-LPF-~D~SFDlV~s~~~L 293 (365)
.|||+| |+|.++..++..+ ..|+++ |++..+.+.+.++ |+ +.++.+++.. +|. .+++||+|++...+
T Consensus 175 ~VLDlG-G~G~~~~~la~~~~~~~v~~v--Di~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 175 DIFVLG-DDDLTSIALMLSGLPKRIAVL--DIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp EEEEES-CTTCHHHHHHHHTCCSEEEEE--CSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred EEEEEC-CCCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 469999 9999999998875 477764 5556776655432 53 7788899888 885 57899999998655
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-------Cc--chh--hhhHHHHHH-hhCCce
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-------KA--SDL--ENVYGPLIG-KLGYKK 337 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-------~~--~~l--~~~~~~~l~-~~gfk~ 337 (365)
..+ ....++.++.|+||||| .. ... ......++. +.||+.
T Consensus 252 ~~~----~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 303 (373)
T 2qm3_A 252 TLE----AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI 303 (373)
T ss_dssp SHH----HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred chH----HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence 332 13578999999999999 11 211 133455666 788754
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-08 Score=90.87 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=60.4
Q ss_pred eEEEEcCcccHHHHHHhhc-C-------CeEEEeccCCChhHHHHHHHc-----------CCCcEEeccCCCCCCCC-Cc
Q 017839 224 LGIDVGGATGSFAARMKLY-N-------ITILTTTMNLGAPYSEAAALR-----------GLVPLHVPLQQRLPLFD-GV 283 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g-------v~Vv~~~ldl~~~~~e~a~~R-----------g~v~~~~g~ae~LPF~D-~S 283 (365)
.+||||||+|.++..+++. + ..|++++ .++.+.+.+.++ ..+.+..+++.. ++++ +.
T Consensus 87 ~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~ 163 (227)
T 1r18_A 87 RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIE--HQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAP 163 (227)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEE--SCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCS
T ss_pred EEEEECCCccHHHHHHHHhcccccCCccCEEEEEE--cCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCC
Confidence 3599999999999999874 3 3777654 445665544332 246678888766 6665 89
Q ss_pred cceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 284 LDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 284 FDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
||+|++..++++.. .++.|+|||||
T Consensus 164 fD~I~~~~~~~~~~---------~~~~~~LkpgG 188 (227)
T 1r18_A 164 YNAIHVGAAAPDTP---------TELINQLASGG 188 (227)
T ss_dssp EEEEEECSCBSSCC---------HHHHHTEEEEE
T ss_pred ccEEEECCchHHHH---------HHHHHHhcCCC
Confidence 99999998886532 57899999999
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-08 Score=96.99 Aligned_cols=95 Identities=9% Similarity=-0.073 Sum_probs=63.8
Q ss_pred CCceEEEEcCcccH--HHHHHhhc---CCeEEEeccCCChhHHHHHHHc--C----CCcEEeccCCCCC------CCCCc
Q 017839 221 VIRLGIDVGGATGS--FAARMKLY---NITILTTTMNLGAPYSEAAALR--G----LVPLHVPLQQRLP------LFDGV 283 (365)
Q Consensus 221 ~iRi~LDIGCGtG~--faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R--g----~v~~~~g~ae~LP------F~D~S 283 (365)
+++.+||||||+|+ +...++++ +.+|+++ |.+..|.+.++++ + .+.++.+|..+++ ..+++
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~V--D~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~ 155 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYV--DNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDT 155 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEE--ECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEE--eCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccc
Confidence 35677999999732 33444332 5788865 4456777665543 1 3678888887752 22566
Q ss_pred cc-----eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 284 LD-----VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 284 FD-----lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|| .|+++.+|||..+.+....++.++.++|+|||
T Consensus 156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG 194 (277)
T 3giw_A 156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGS 194 (277)
T ss_dssp CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTC
T ss_pred cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCc
Confidence 77 57788888544443335679999999999999
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-08 Score=92.98 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=64.3
Q ss_pred ceEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s 289 (365)
+.|||||||+|.++..++++ + ..|+++++ ++.+.+.+++. ..+.++.+|+.. ++..+++||+|++
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEi--d~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 77 EHVLVVGGGDGGVIREILKHPSVKKATLVDI--DGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp CEEEEESCTTCHHHHHHTTCTTCSEEEEEES--CHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CEEEEECCchHHHHHHHHhCCCCceEEEEEC--CHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 34599999999999999987 4 46766554 46666655432 235678888654 5556789999999
Q ss_pred cchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
.... ++.+... ...++.++.|+|||||
T Consensus 155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG 183 (275)
T 1iy9_A 155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDG 183 (275)
T ss_dssp SCSS-CCSCCCCCSTTHHHHHHHHHEEEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHHhcCCCc
Confidence 5432 3332111 1358999999999999
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-08 Score=96.87 Aligned_cols=91 Identities=18% Similarity=0.088 Sum_probs=65.0
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-----------CCCcEEeccCCC-CCCCCCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-----------GLVPLHVPLQQR-LPLFDGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-----------g~v~~~~g~ae~-LPF~D~SFDlV~s 289 (365)
.|||||||+|.++..++++ +..++++++ ++.+.+.++++ ..+.++.+++.. ++..+++||+|++
T Consensus 80 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 80 RVLIVGGGEGATLREVLKHPTVEKAVMVDI--DGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp EEEEEECTTSHHHHHHTTSTTCCEEEEEES--CHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred eEEEEcCCcCHHHHHHHhcCCCCEEEEEEC--CHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 4599999999999999987 356776554 45666554431 236678888765 5666889999999
Q ss_pred cchhhcc---cChhh--HHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRW---IPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w---~d~~~--le~aL~Ei~RVLRPGG 317 (365)
.... ++ .+... .+.++.++.|+|||||
T Consensus 158 d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG 189 (314)
T 1uir_A 158 DLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGG 189 (314)
T ss_dssp ECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEE
T ss_pred CCCC-cccccCcchhccHHHHHHHHHHhcCCCc
Confidence 7554 44 21111 2468999999999999
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-08 Score=96.41 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=62.1
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s~ 290 (365)
.|||||||+|.++..+++++ ..|+++++ ++.+.+.+.++ ..+.++.+++.. ++..+++||+|++.
T Consensus 98 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d 175 (304)
T 2o07_A 98 KVLIIGGGDGGVLREVVKHPSVESVVQCEI--DEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 175 (304)
T ss_dssp EEEEEECTTSHHHHHHTTCTTCCEEEEEES--CHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCchHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence 45999999999999999874 56766554 46666655432 236678888655 56678899999985
Q ss_pred chhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
... ++.+... .+.++.++.|+|||||
T Consensus 176 ~~~-~~~~~~~l~~~~~l~~~~~~LkpgG 203 (304)
T 2o07_A 176 SSD-PMGPAESLFKESYYQLMKTALKEDG 203 (304)
T ss_dssp CC------------CHHHHHHHHHEEEEE
T ss_pred CCC-CCCcchhhhHHHHHHHHHhccCCCe
Confidence 432 3322111 1358999999999999
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.6e-08 Score=97.93 Aligned_cols=126 Identities=12% Similarity=0.138 Sum_probs=80.5
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--C-CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--N-ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRL 277 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--g-v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~L 277 (365)
.+..+++..+ |. + |||+|||+|..+..+++. + ..|++. |++..+.+.+.+ .|. +.+..+++..+
T Consensus 96 l~~~~L~~~~---g~-~-VLDlcaGpGgkt~~lA~~~~~~g~V~Av--Dis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l 168 (456)
T 3m4x_A 96 IVGTAAAAKP---GE-K-VLDLCAAPGGKSTQLAAQMKGKGLLVTN--EIFPKRAKILSENIERWGVSNAIVTNHAPAEL 168 (456)
T ss_dssp HHHHHHCCCT---TC-E-EEESSCTTCHHHHHHHHHHTTCSEEEEE--CSSHHHHHHHHHHHHHHTCSSEEEECCCHHHH
T ss_pred HHHHHcCCCC---CC-E-EEEECCCcCHHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence 3445555444 43 4 599999999999999875 2 567764 445555554432 354 45666777776
Q ss_pred C-CCCCccceeEEcc------hhh-------cccChh------hHHHHHHHHHhhhCCCC---------CcchhhhhHHH
Q 017839 278 P-LFDGVLDVVRCGH------AVN-------RWIPVI------MMEFLFYDVDRVLRGGG---------KASDLENVYGP 328 (365)
Q Consensus 278 P-F~D~SFDlV~s~~------~L~-------~w~d~~------~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~ 328 (365)
+ +.+++||+|++.- ++. .|.... ....+|.++.|+||||| ..++.+++...
T Consensus 169 ~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~ 248 (456)
T 3m4x_A 169 VPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISW 248 (456)
T ss_dssp HHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred hhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHH
Confidence 5 4578999998621 121 122111 11257999999999999 33555566677
Q ss_pred HHHhhCCceee
Q 017839 329 LIGKLGYKKVK 339 (365)
Q Consensus 329 ~l~~~gfk~i~ 339 (365)
++++.+|+.+.
T Consensus 249 ~l~~~~~~l~~ 259 (456)
T 3m4x_A 249 LVENYPVTIEE 259 (456)
T ss_dssp HHHHSSEEEEC
T ss_pred HHHhCCCEEEe
Confidence 88888865543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-07 Score=94.41 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=71.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCC-CCCccceeEEc---
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPL-FDGVLDVVRCG--- 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF-~D~SFDlV~s~--- 290 (365)
.|||+|||+|..+..|++. +..|++. |++..+.+.+.+ .|. +.++.+++..+++ .+++||+|++.
T Consensus 120 ~VLDl~aGpG~kt~~lA~~~~~~g~V~av--Dis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 120 RVMDVAAAPGSKTTQISARMNNEGAILAN--EFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp EEEESSCTTSHHHHHHHHHTTTCSEEEEE--CSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred EEEEeCCCCCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 3599999999999999885 2567764 555666655433 243 5677788888875 67899999972
Q ss_pred ---chhh-------cccChh------hHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhhC
Q 017839 291 ---HAVN-------RWIPVI------MMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLG 334 (365)
Q Consensus 291 ---~~L~-------~w~d~~------~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~g 334 (365)
.++. +|.+.. ....+|.++.|+||||| ..++.+++...++++.+
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence 1222 232110 12357999999999999 22334444556677665
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.5e-07 Score=84.32 Aligned_cols=113 Identities=10% Similarity=0.081 Sum_probs=75.2
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHH----cCC---CcEEeccC-CCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQ-QRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~a-e~LPF~D~SFDlV~s~~~L 293 (365)
.+||||||+|.++..++..+ ..|+++++ ++.+.+.+.+ .|+ +.+..+++ +.++.. ..||+|+.....
T Consensus 18 ~VlDIGtGsG~l~i~la~~~~~~~V~avDi--~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~-~~~D~IviaG~G 94 (225)
T 3kr9_A 18 ILLDVGSDHAYLPIELVERGQIKSAIAGEV--VEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-DQVSVITIAGMG 94 (225)
T ss_dssp EEEEETCSTTHHHHHHHHTTSEEEEEEEES--SHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GCCCEEEEEEEC
T ss_pred EEEEeCCCcHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC-cCCCEEEEcCCC
Confidence 45999999999999999886 35665544 4555554432 343 56788876 455532 269998865532
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC----CcchhhhhHHHHHHhhCCceeeEEeec
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG----KASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG----~~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
- ..+...+.+..+.|+||| ....-.+....++...||..+.-.+..
T Consensus 95 g-----~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~Gf~i~~e~lv~ 144 (225)
T 3kr9_A 95 G-----RLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAESILE 144 (225)
T ss_dssp H-----HHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred h-----HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEEE
Confidence 1 124468889999999999 111122336678999999887655443
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-08 Score=96.17 Aligned_cols=91 Identities=15% Similarity=0.201 Sum_probs=63.9
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s~ 290 (365)
.|||||||+|.++..++++ +..|+++++ ++.+.+.++++ ..+.++.+|+.. ++..+++||+|++.
T Consensus 119 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--s~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d 196 (321)
T 2pt6_A 119 NVLVVGGGDGGIIRELCKYKSVENIDICEI--DETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 196 (321)
T ss_dssp EEEEEECTTCHHHHHHTTCTTCCEEEEEES--CHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred EEEEEcCCccHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence 4599999999999999987 356776544 46676666543 135677777654 44557899999986
Q ss_pred chhhcccChhhH--HHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMM--EFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~l--e~aL~Ei~RVLRPGG 317 (365)
.. .++.+...+ +.++.++.|+|||||
T Consensus 197 ~~-~p~~~~~~l~~~~~l~~~~~~LkpgG 224 (321)
T 2pt6_A 197 SS-DPIGPAETLFNQNFYEKIYNALKPNG 224 (321)
T ss_dssp CC-CSSSGGGGGSSHHHHHHHHHHEEEEE
T ss_pred Cc-CCCCcchhhhHHHHHHHHHHhcCCCc
Confidence 42 233222221 468999999999999
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-08 Score=88.80 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=59.7
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCC-C-CC--C--Ccccee
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRL-P-LF--D--GVLDVV 287 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~L-P-F~--D--~SFDlV 287 (365)
.+||||||+|.++..+++. +..+++++++ ..+.+.+.+ .| .+.++.+++... + +. + ++||+|
T Consensus 72 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 72 KALDLGTFTGYSALALALALPADGRVVTCEVD--AQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp EEEEECCTTSHHHHHHHTTSCTTCEEEEEESC--SHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred EEEEEcCCccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 4599999999999999985 5677765554 455554433 23 356777765332 1 21 1 789999
Q ss_pred EEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 288 RCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 288 ~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
++.... .....++.++.|+|||||
T Consensus 150 ~~d~~~------~~~~~~l~~~~~~L~pgG 173 (229)
T 2avd_A 150 VVDADK------ENCSAYYERCLQLLRPGG 173 (229)
T ss_dssp EECSCS------TTHHHHHHHHHHHEEEEE
T ss_pred EECCCH------HHHHHHHHHHHHHcCCCe
Confidence 986432 123468999999999999
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.8e-08 Score=94.66 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=64.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc------CCCcEEeccCCCC--CCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR------GLVPLHVPLQQRL--PLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R------g~v~~~~g~ae~L--PF~D~SFDlV~s~~~L 293 (365)
.|||||||+|.++..++++ ++.++++++ ++.+.+.+++. ..+.++.+++..+ .+++++||+|++....
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~VEi--dp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVVEL--DAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEEES--CHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEEEC--CHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 4599999999999999983 677766444 57777776653 1356788887553 4568899999985432
Q ss_pred hcccChhhH--HHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMM--EFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~l--e~aL~Ei~RVLRPGG 317 (365)
++.....+ +.++.+++|+|||||
T Consensus 170 -~~~~~~~L~t~efl~~~~r~LkpgG 194 (317)
T 3gjy_A 170 -GAITPQNFTTVEFFEHCHRGLAPGG 194 (317)
T ss_dssp -TSCCCGGGSBHHHHHHHHHHEEEEE
T ss_pred -ccccchhhhHHHHHHHHHHhcCCCc
Confidence 22211111 468999999999999
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-08 Score=96.29 Aligned_cols=91 Identities=12% Similarity=0.075 Sum_probs=60.6
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s~ 290 (365)
.|||||||+|.++..++++ +..|++++ +++.+.+.++++ ..+.++.+++.. ++..+++||+|++.
T Consensus 111 ~VLdIG~G~G~~~~~l~~~~~~~~v~~vD--id~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 111 RVLIIGGGDGGILREVLKHESVEKVTMCE--IDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp EEEEESCTTSHHHHHHTTCTTCCEEEEEC--SCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred EEEEEcCCcCHHHHHHHHcCCCCEEEEEE--CCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 4599999999999999987 35676644 456677666543 135677777654 45567899999985
Q ss_pred chhhcccChhhH--HHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMM--EFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~l--e~aL~Ei~RVLRPGG 317 (365)
.. .++.+...+ ..++.++.|+|||||
T Consensus 189 ~~-~~~~~~~~l~t~~~l~~~~~~LkpgG 216 (314)
T 2b2c_A 189 SS-DPVGPAESLFGQSYYELLRDALKEDG 216 (314)
T ss_dssp CC--------------HHHHHHHHEEEEE
T ss_pred CC-CCCCcchhhhHHHHHHHHHhhcCCCe
Confidence 53 344332222 468999999999999
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.1e-08 Score=95.07 Aligned_cols=92 Identities=18% Similarity=0.144 Sum_probs=63.6
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCCC-C-CCCCccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQRL-P-LFDGVLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~L-P-F~D~SFDlV~ 288 (365)
+.|||||||+|.++..++++ +..|+++++ ++.+.+.++++ ..+.++.+++... + +++++||+|+
T Consensus 122 ~~VLdIG~G~G~~a~~la~~~~~~~V~~VDi--s~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 122 KKVLVIGGGDGGVLREVARHASIEQIDMCEI--DKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CEEEEETCSSSHHHHHHTTCTTCCEEEEEES--CHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CEEEEECCCccHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 34599999999999999987 356776554 46666655432 2367788886553 2 4578999999
Q ss_pred EcchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
+...- ++..... ...++.++.|+|||||
T Consensus 200 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG 229 (334)
T 1xj5_A 200 VDSSD-PIGPAKELFEKPFFQSVARALRPGG 229 (334)
T ss_dssp ECCCC-TTSGGGGGGSHHHHHHHHHHEEEEE
T ss_pred ECCCC-ccCcchhhhHHHHHHHHHHhcCCCc
Confidence 85431 2221111 2468999999999999
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-08 Score=91.72 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=61.1
Q ss_pred eEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s~ 290 (365)
.|||||||+|.++..++++ + ..|+++++ ++.+.+.+.++ ..+.++.+|+.. ++..+++||+|++.
T Consensus 93 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 93 KVLIIGGGDGGTLREVLKHDSVEKAILCEV--DGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp EEEEEECTTCHHHHHHTTSTTCSEEEEEES--CHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred EEEEEcCCcCHHHHHHHhcCCCCEEEEEEC--CHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 4599999999999999987 3 56766554 45666554432 236678887654 56667899999985
Q ss_pred chhhcccC-hh--hHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIP-VI--MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d-~~--~le~aL~Ei~RVLRPGG 317 (365)
.. .+|.. .. ....++.++.|+|||||
T Consensus 171 ~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG 199 (296)
T 1inl_A 171 ST-DPTAGQGGHLFTEEFYQACYDALKEDG 199 (296)
T ss_dssp C-----------CCSHHHHHHHHHHEEEEE
T ss_pred CC-CcccCchhhhhHHHHHHHHHHhcCCCc
Confidence 32 23221 10 01468999999999999
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=9.9e-08 Score=90.39 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=70.0
Q ss_pred ccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHH----cCC---CcEEe
Q 017839 200 FKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAAL----RGL---VPLHV 271 (365)
Q Consensus 200 ~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~ 271 (365)
++..++.+++.+++..+..++ .+ +||+|||+|.++..+++. +..|++++ ++..+.+.+.+ .|. +.++.
T Consensus 104 pr~~te~lv~~~l~~~~~~~~-~~-vLDlG~GsG~~~~~la~~~~~~v~~vD--is~~al~~A~~n~~~~~l~~~v~~~~ 179 (284)
T 1nv8_A 104 PRPETEELVELALELIRKYGI-KT-VADIGTGSGAIGVSVAKFSDAIVFATD--VSSKAVEIARKNAERHGVSDRFFVRK 179 (284)
T ss_dssp CCTTHHHHHHHHHHHHHHHTC-CE-EEEESCTTSHHHHHHHHHSSCEEEEEE--SCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred cChhHHHHHHHHHHHhcccCC-CE-EEEEeCchhHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 343445556666653321112 23 599999999999999987 67787655 45666655543 243 67888
Q ss_pred ccCCCCCCCCCcc---ceeEEc------------chhhcccCh-------hhHHHHHHHHH-hhhCCCC
Q 017839 272 PLQQRLPLFDGVL---DVVRCG------------HAVNRWIPV-------IMMEFLFYDVD-RVLRGGG 317 (365)
Q Consensus 272 g~ae~LPF~D~SF---DlV~s~------------~~L~~w~d~-------~~le~aL~Ei~-RVLRPGG 317 (365)
++... +++ ++| |+|+++ .+. | .+. +.+ .++.++. ++|+|||
T Consensus 180 ~D~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~-ep~~al~~~~dgl-~~~~~i~~~~l~pgG 243 (284)
T 1nv8_A 180 GEFLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVL-F-EPPEALFGGEDGL-DFYREFFGRYDTSGK 243 (284)
T ss_dssp SSTTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCC-C-SCHHHHBCTTTSC-HHHHHHHHHCCCTTC
T ss_pred Ccchh-hcc-cccCCCCEEEEcCCCCCcccccChhhc-c-CcHHHhcCCCcHH-HHHHHHHHhcCCCCC
Confidence 88765 232 589 999997 111 1 111 111 4789999 9999999
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=4e-08 Score=92.99 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=63.8
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s~ 290 (365)
.|||||||+|.++..++++. ..++++++ ++.+.+.+.++ ..+.++.+++.. ++..+++||+|++.
T Consensus 81 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 158 (283)
T 2i7c_A 81 NVLVVGGGDGGIIRELCKYKSVENIDICEI--DETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 158 (283)
T ss_dssp EEEEEECTTSHHHHHHTTCTTCCEEEEEES--CHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred eEEEEeCCcCHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEc
Confidence 45999999999999998873 56666554 46676666543 135677777654 34447899999985
Q ss_pred chhhcccChhhH--HHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMM--EFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~l--e~aL~Ei~RVLRPGG 317 (365)
.. .++.+...+ ..++.++.|+|||||
T Consensus 159 ~~-~~~~~~~~l~~~~~l~~~~~~L~pgG 186 (283)
T 2i7c_A 159 SS-DPIGPAETLFNQNFYEKIYNALKPNG 186 (283)
T ss_dssp CC-CTTTGGGGGSSHHHHHHHHHHEEEEE
T ss_pred CC-CCCCcchhhhHHHHHHHHHHhcCCCc
Confidence 43 233332222 468999999999999
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-08 Score=94.10 Aligned_cols=90 Identities=12% Similarity=0.082 Sum_probs=61.1
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHc----------------CCCcEEeccCCC-CCCCCCccc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALR----------------GLVPLHVPLQQR-LPLFDGVLD 285 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~R----------------g~v~~~~g~ae~-LPF~D~SFD 285 (365)
.|||||||+|.++..+++++ ..|+++++ ++.+.+.+.+. ..+.++.+++.. ++. +++||
T Consensus 78 ~VLdiG~G~G~~~~~l~~~~~~~v~~vDi--d~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD 154 (281)
T 1mjf_A 78 RVLVIGGGDGGTVREVLQHDVDEVIMVEI--DEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFD 154 (281)
T ss_dssp EEEEEECTTSHHHHHHTTSCCSEEEEEES--CHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEE
T ss_pred eEEEEcCCcCHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCee
Confidence 45999999999999999875 46766554 46666655432 125567777643 344 78999
Q ss_pred eeEEcchhhcccChhhH--HHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVNRWIPVIMM--EFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~l--e~aL~Ei~RVLRPGG 317 (365)
+|++.... ++.+...+ ..++.++.|+|||||
T Consensus 155 ~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG 187 (281)
T 1mjf_A 155 VIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPG 187 (281)
T ss_dssp EEEEECCC-CC-----TTSHHHHHHHHHHEEEEE
T ss_pred EEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCc
Confidence 99986542 33322211 468999999999999
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=88.88 Aligned_cols=147 Identities=11% Similarity=0.029 Sum_probs=80.8
Q ss_pred cchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-CCe-EEEe--ccCCChhHHHHHHHcC-CCcEEeccCCCCCC
Q 017839 205 DLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-NIT-ILTT--TMNLGAPYSEAAALRG-LVPLHVPLQQRLPL 279 (365)
Q Consensus 205 ~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-gv~-Vv~~--~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF 279 (365)
.|-+.++.+-....++ ..|||+|||+|.|+...+++ ++. +.+. +.|+...... ....| .+-.+.++++-..|
T Consensus 60 A~KL~ei~ek~~l~~~--~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g~~ii~~~~~~dv~~l 136 (277)
T 3evf_A 60 TAKLRWFHERGYVKLE--GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLGWNIITFKDKTDIHRL 136 (277)
T ss_dssp HHHHHHHHHTTSSCCC--EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTTGGGEEEECSCCTTTS
T ss_pred HHHHHHHHHhCCCCCC--CEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCCCCeEEEeccceehhc
Confidence 4555555543211113 35799999999999988876 432 3222 2222100000 00001 11223445555678
Q ss_pred CCCccceeEEcchhh---cccChhhHHHHHHHHHhhhCCC-C-------C--cchhhhhHHHHHHhhCCceeeEEeecCC
Q 017839 280 FDGVLDVVRCGHAVN---RWIPVIMMEFLFYDVDRVLRGG-G-------K--ASDLENVYGPLIGKLGYKKVKWATANKP 346 (365)
Q Consensus 280 ~D~SFDlV~s~~~L~---~w~d~~~le~aL~Ei~RVLRPG-G-------~--~~~l~~~~~~~l~~~gfk~i~w~v~~K~ 346 (365)
.++.||+|+|..+.+ +|.|....-.+|..+.++|||| | . +++..+ +...+++. |+++++..- -.
T Consensus 137 ~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~-l~~~lk~~-F~~V~~~KP-aS 213 (277)
T 3evf_A 137 EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLE-KLELLQRR-FGGTVIRNP-LS 213 (277)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHH-HHHHHHHH-HCCEEECCT-TS
T ss_pred CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHH-HHHHHHHh-cCCEEEEeC-CC
Confidence 899999999977542 2444322113478889999999 9 3 555544 33344443 666654432 22
Q ss_pred CCCCCceEEEE
Q 017839 347 NSKNGEVYLTA 357 (365)
Q Consensus 347 d~~~~~~y~sa 357 (365)
-.+..|+|+-+
T Consensus 214 R~~S~E~Y~V~ 224 (277)
T 3evf_A 214 RNSTHEMYYVS 224 (277)
T ss_dssp CTTCCCEEEES
T ss_pred CCCCCceEEEE
Confidence 12688999865
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4.6e-07 Score=85.89 Aligned_cols=122 Identities=7% Similarity=-0.091 Sum_probs=79.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CC-CcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.|||||||+|-++..+. .+.+++++++ ++.+.+++.+. |. ..+.+.+...-|+++ +||+|.+.-++++..+
T Consensus 108 ~VLDlGCG~gpLal~~~-~~~~y~a~DI--d~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~LE~ 183 (253)
T 3frh_A 108 RVLDIACGLNPLALYER-GIASVWGCDI--HQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLLER 183 (253)
T ss_dssp EEEEETCTTTHHHHHHT-TCSEEEEEES--BHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHHHH
T ss_pred eEEEecCCccHHHHHhc-cCCeEEEEeC--CHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHhhh
Confidence 45999999999999887 5567776555 46777665442 32 335666777777665 9999999977766543
Q ss_pred hhhHHHHHHHHHhhhCCCC------------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceE
Q 017839 299 VIMMEFLFYDVDRVLRGGG------------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVY 354 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG------------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y 354 (365)
.. . .+..++.+-|+|+| ..+-+.+.|.+++++.= ..--|.+.++.- .+|.+
T Consensus 184 q~-~-~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~-~~~~~~~~~~~~--~nEl~ 246 (253)
T 3frh_A 184 EQ-A-GSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGL-PAEFEIEDKKTI--GTELI 246 (253)
T ss_dssp HS-T-THHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHS-CTTEEEEEEEEE--TTEEE
T ss_pred hc-h-hhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHh-hccchhhhheec--CceEE
Confidence 22 2 34558999999999 12234567888887643 445666666643 45544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-07 Score=90.51 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=72.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.+||+|||+|.++.. ++.+..|+++++ +..+.+.+.+ .|+ +.++.+++..++ ++||+|++.--. .
T Consensus 198 ~VLDlg~G~G~~~l~-a~~~~~V~~vD~--s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~-~- 269 (336)
T 2yx1_A 198 VVVDMFAGVGPFSIA-CKNAKKIYAIDI--NPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK-F- 269 (336)
T ss_dssp EEEETTCTTSHHHHH-TTTSSEEEEEES--CHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT-T-
T ss_pred EEEEccCccCHHHHh-ccCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH-h-
Confidence 469999999999999 875567776554 4555554433 333 678888887766 899999985321 1
Q ss_pred cChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhh-CCceeeEEeecC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKL-GYKKVKWATANK 345 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~-gfk~i~w~v~~K 345 (365)
...++.++.++|+||| ..... +.....+++. +|+.+.+...+.
T Consensus 270 -----~~~~l~~~~~~L~~gG~l~~~~~~~~~-~~~~~~l~~~~~~~i~~~~~v~~ 319 (336)
T 2yx1_A 270 -----AHKFIDKALDIVEEGGVIHYYTIGKDF-DKAIKLFEKKCDCEVLEKRIVKS 319 (336)
T ss_dssp -----GGGGHHHHHHHEEEEEEEEEEEEESSS-HHHHHHHHHHSEEEEEEEEEEEE
T ss_pred -----HHHHHHHHHHHcCCCCEEEEEEeecCc-hHHHHHHHHhcCCcEEEEEEEec
Confidence 1147889999999999 11112 2345566666 777666555543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-07 Score=88.30 Aligned_cols=68 Identities=7% Similarity=0.038 Sum_probs=55.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.|||||||+|.++..|++++..|+++++| ..+.+.+.++ +.+.++.+|+.++++++..||.|+++...
T Consensus 53 ~VLEIG~G~G~lT~~La~~~~~V~aVEid--~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 53 VVLEIGLGKGILTEELAKNAKKVYVIEID--KSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPY 124 (295)
T ss_dssp EEEEECCTTSHHHHHHHHHSSEEEEEESC--GGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEECCG
T ss_pred EEEEECCCchHHHHHHHhcCCEEEEEECC--HHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEeCcc
Confidence 46999999999999999988888876554 5666555433 45778999999999999999999988654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-07 Score=92.54 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=79.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC----CCcEEeccCCC-CCC---CCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG----LVPLHVPLQQR-LPL---FDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg----~v~~~~g~ae~-LPF---~D~SFDlV~s~ 290 (365)
.+||+|||||.++..+++.|. .|++++++ +.+.+.+.+ .| .+.++.+++.. ++. .+++||+|++.
T Consensus 215 ~VLDl~cGtG~~sl~la~~ga~~V~~vD~s--~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D 292 (385)
T 2b78_A 215 TVLNLFSYTAAFSVAAAMGGAMATTSVDLA--KRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 292 (385)
T ss_dssp EEEEETCTTTHHHHHHHHTTBSEEEEEESC--TTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEeeccCHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence 469999999999999998775 67775554 556555432 33 35678888654 332 25689999984
Q ss_pred chh-----hcccC-hhhHHHHHHHHHhhhCCCC-----------CcchhhhhHHHHHHhhCCceeeEEeecCCCC---C-
Q 017839 291 HAV-----NRWIP-VIMMEFLFYDVDRVLRGGG-----------KASDLENVYGPLIGKLGYKKVKWATANKPNS---K- 349 (365)
Q Consensus 291 ~~L-----~~w~d-~~~le~aL~Ei~RVLRPGG-----------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~---~- 349 (365)
--. ....+ ......++.++.++|+||| ..+...+.....+.+.|.+.+........-+ .
T Consensus 293 PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~D~p~~~~~ 372 (385)
T 2b78_A 293 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQLPSDFAVNVQD 372 (385)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEEECCCTTSCCCTTC
T ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCCC
Confidence 211 11111 1233457788899999999 1122233344556677776443332222112 1
Q ss_pred CCceEEEEee
Q 017839 350 NGEVYLTALL 359 (365)
Q Consensus 350 ~~~~y~sall 359 (365)
...-||.+++
T Consensus 373 ~e~~yLk~~~ 382 (385)
T 2b78_A 373 ESSNYLKVFT 382 (385)
T ss_dssp GGGCCCEEEE
T ss_pred CCCCCceEEE
Confidence 2236777654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.7e-08 Score=87.76 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=61.1
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCC-CCC------CCCccce
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQR-LPL------FDGVLDV 286 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~-LPF------~D~SFDl 286 (365)
.+||||||+|..+..|++. +..++++++ +..+.+.+.+ .|. +.++.+++.. +|. .+++||+
T Consensus 73 ~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 73 KTIEVGVFTGYSLLLTALSIPDDGKITAIDF--DREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp EEEEECCTTSHHHHHHHHHSCTTCEEEEEES--CHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred EEEEeCCCCCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 4599999999999999875 567776554 4556554432 343 5678887644 332 3689999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|++...- ......+.++.|+|||||
T Consensus 151 I~~d~~~------~~~~~~l~~~~~~L~pGG 175 (237)
T 3c3y_A 151 GFVDADK------PNYIKYHERLMKLVKVGG 175 (237)
T ss_dssp EEECSCG------GGHHHHHHHHHHHEEEEE
T ss_pred EEECCch------HHHHHHHHHHHHhcCCCe
Confidence 9976422 234468999999999999
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=86.79 Aligned_cols=127 Identities=15% Similarity=0.094 Sum_probs=78.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC----CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR----LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~----LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..|++++..|+++++ +..+.+.+.+ .|+ +.++.+++.. +|+.+++||+|++.--.
T Consensus 289 ~VLDlgcG~G~~~~~la~~~~~V~gvD~--s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr 366 (433)
T 1uwv_A 289 RVLDLFCGMGNFTLPLATQAASVVGVEG--VPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 366 (433)
T ss_dssp EEEEESCTTTTTHHHHHTTSSEEEEEES--CHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCT
T ss_pred EEEECCCCCCHHHHHHHhhCCEEEEEeC--CHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCC
Confidence 4599999999999999998878887554 4666655433 343 6788888766 56888999999984322
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeec
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQK 361 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~K 361 (365)
......+..+. -++|++ ....+.+.. ..+...||+..+..... ..+....+=.-|+|+|
T Consensus 367 ------~g~~~~~~~l~-~~~p~~ivyvsc~p~tlard~-~~l~~~Gy~~~~~~~~d-~Fp~t~HvE~v~ll~r 431 (433)
T 1uwv_A 367 ------AGAAGVMQQII-KLEPIRIVYVSCNPATLARDS-EALLKAGYTIARLAMLD-MFPHTGHLESMVLFSR 431 (433)
T ss_dssp ------TCCHHHHHHHH-HHCCSEEEEEESCHHHHHHHH-HHHHHTTCEEEEEEEEC-CSTTSSCCEEEEEEEC
T ss_pred ------ccHHHHHHHHH-hcCCCeEEEEECChHHHHhhH-HHHHHCCcEEEEEEEec-cCCCCCeEEEEEEEEE
Confidence 11122343433 378988 222222222 34566799865544332 2233333334567765
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.8e-07 Score=86.76 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=58.5
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----------CCCcEEeccCCCCCCCCCccceeEEcch
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~LPF~D~SFDlV~s~~~ 292 (365)
+.|||||||+|.++..+++++..|+++ |+++.+.+.+.+. ..+.++.+++.... ++||+|++..
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~v~~v--eid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 74 KEVLIVDGFDLELAHQLFKYDTHIDFV--QADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CEEEEESSCCHHHHHHHTTSSCEEEEE--CSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CEEEEEeCCcCHHHHHHHhCCCEEEEE--ECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 346999999999999998776556554 4445565544321 23567778876655 8999999862
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.++. .++.++.|+|||||
T Consensus 148 ----~dp~---~~~~~~~~~L~pgG 165 (262)
T 2cmg_A 148 ----EPDI---HRIDGLKRMLKEDG 165 (262)
T ss_dssp ----CCCH---HHHHHHHTTEEEEE
T ss_pred ----CChH---HHHHHHHHhcCCCc
Confidence 2221 38999999999999
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.4e-07 Score=88.73 Aligned_cols=92 Identities=17% Similarity=0.029 Sum_probs=60.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCC-CCCCCccceeEEcchhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRL-PLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~L-PF~D~SFDlV~s~~~L~~w~ 297 (365)
.+||+|||||.++..+++.|..|+++ |+++.+.+.+.+ .|. ..+..+++..+ +..++.||+|++.--.....
T Consensus 217 ~VLDlg~GtG~~sl~~a~~ga~V~av--Dis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~ 294 (393)
T 4dmg_A 217 RVLDVYSYVGGFALRAARKGAYALAV--DKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVKR 294 (393)
T ss_dssp EEEEESCTTTHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCSS
T ss_pred eEEEcccchhHHHHHHHHcCCeEEEE--ECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 45999999999999999988887664 555666665543 343 24666776543 33244499999853210000
Q ss_pred ------ChhhHHHHHHHHHhhhCCCC
Q 017839 298 ------PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 ------d~~~le~aL~Ei~RVLRPGG 317 (365)
-......++.++.|+|||||
T Consensus 295 ~~~~~~~~~~~~~ll~~a~~~LkpGG 320 (393)
T 4dmg_A 295 PEELPAMKRHLVDLVREALRLLAEEG 320 (393)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 01233568889999999999
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.2e-07 Score=89.52 Aligned_cols=92 Identities=13% Similarity=-0.004 Sum_probs=62.1
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHH----cCC----CcEEeccCCCCCC----CCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQQRLPL----FDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~ae~LPF----~D~SFDlV~s~ 290 (365)
.+||+|||+|.++..+++.| ..|+++++ ++.+.+.+.+ .|+ +.++.+++..+.. .++.||+|++.
T Consensus 223 ~VLDl~cG~G~~sl~la~~g~~~V~~vD~--s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d 300 (396)
T 3c0k_A 223 RVLNCFSYTGGFAVSALMGGCSQVVSVDT--SQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_dssp EEEEESCTTCSHHHHHHHTTCSEEEEEES--CHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEeeccCCHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence 45999999999999999986 46776554 4566555432 243 4578887655421 25789999986
Q ss_pred chhhc-----c-cChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNR-----W-IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~-----w-~d~~~le~aL~Ei~RVLRPGG 317 (365)
--... + .........+.++.++|+|||
T Consensus 301 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 333 (396)
T 3c0k_A 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNEGG 333 (396)
T ss_dssp CSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 32100 0 001245578999999999999
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.9e-07 Score=90.53 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=62.2
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cC---CCcEEeccCCCCCC----CCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQRLPL----FDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~LPF----~D~SFDlV~s~~ 291 (365)
.+||+|||+|.++..+++.|. .|+++++ ++.+.+.+.+ .| .+.++.+++..+.. .+++||+|++.-
T Consensus 220 ~VLDl~~G~G~~~~~la~~g~~~v~~vD~--s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 220 RVLDVFTYTGGFAIHAAIAGADEVIGIDK--SPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp EEEETTCTTTHHHHHHHHTTCSEEEEEES--CHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEecCCCCHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 469999999999999998864 7776554 4556554432 34 25678888765421 367999999842
Q ss_pred hh--------hcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AV--------NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L--------~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
-. .++. .....++.++.++|||||
T Consensus 298 P~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG 329 (396)
T 2as0_A 298 PAFVQHEKDLKAGL--RAYFNVNFAGLNLVKDGG 329 (396)
T ss_dssp CCSCSSGGGHHHHH--HHHHHHHHHHHTTEEEEE
T ss_pred CCCCCCHHHHHHHH--HHHHHHHHHHHHhcCCCc
Confidence 11 0111 234578899999999999
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.9e-06 Score=81.77 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=62.0
Q ss_pred eEEEEcCcccHHHHHHhhcC-------CeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYN-------ITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-------v~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.|||+|||+|.++..++++. ..+.+.+++ ..+.+.+.. .|. +.++.+++.. +..++.||+|+++-
T Consensus 133 ~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~--~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 133 SILDPACGTANLLTTVINQLELKGDVDVHASGVDVD--DLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDL 209 (344)
T ss_dssp EEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESC--HHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEEC
T ss_pred EEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECC--HHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEECC
Confidence 45999999999998887652 566765554 455444432 343 5677777654 34578999999987
Q ss_pred hhhcccChhh--------------H-HHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIM--------------M-EFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~--------------l-e~aL~Ei~RVLRPGG 317 (365)
.+..|..++. . ..++.++.+.|||||
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG 250 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGG 250 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCC
Confidence 6544432110 1 147899999999999
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=82.22 Aligned_cols=67 Identities=9% Similarity=-0.025 Sum_probs=53.2
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc---CCCcEEeccCCCCCCCCC-ccceeEEcchh
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR---GLVPLHVPLQQRLPLFDG-VLDVVRCGHAV 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R---g~v~~~~g~ae~LPF~D~-SFDlV~s~~~L 293 (365)
+||||||+|.++..|++++..|+++++| ..+.+.+.++ +.+.++.+|+..++|++. .||.|+++.-.
T Consensus 50 VLEIG~G~G~lt~~L~~~~~~V~avEid--~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy 120 (271)
T 3fut_A 50 VFEVGPGLGALTRALLEAGAEVTAIEKD--LRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANLPY 120 (271)
T ss_dssp EEEECCTTSHHHHHHHHTTCCEEEEESC--GGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEEECS
T ss_pred EEEEeCchHHHHHHHHHcCCEEEEEECC--HHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEecCcc
Confidence 5999999999999999998888875554 6677766554 346788999999998764 78999887643
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.5e-06 Score=81.38 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=66.7
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhh--cc--
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVN--RW-- 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~--~w-- 296 (365)
.+||+|||+|.++..++++ +..++++++|. .+.+.+ ..+.++.++....+ +++.||+|+++=-.. ..
T Consensus 42 ~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~--~~~~~a---~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~ 115 (421)
T 2ih2_A 42 RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDP--KALDLP---PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEAS 115 (421)
T ss_dssp EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCT--TTCCCC---TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTT
T ss_pred EEEECCCCChHHHHHHHHHhCCCCeEEEEECCH--HHHHhC---CCCcEEeCChhhcC-ccCCCCEEEECcCccCccccc
Confidence 3599999999999999874 46788766653 222222 23567888877665 357999999952111 00
Q ss_pred -----cChh-----------------hHHHHHHHHHhhhCCCC-----C------cchhhhhHHHHHHhhCC
Q 017839 297 -----IPVI-----------------MMEFLFYDVDRVLRGGG-----K------ASDLENVYGPLIGKLGY 335 (365)
Q Consensus 297 -----~d~~-----------------~le~aL~Ei~RVLRPGG-----~------~~~l~~~~~~~l~~~gf 335 (365)
.+.+ ....++..+.++||||| . .+.. +.+.+++.+.|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~-~~lr~~l~~~~~ 186 (421)
T 2ih2_A 116 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDF-ALLREFLAREGK 186 (421)
T ss_dssp TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGG-HHHHHHHHHHSE
T ss_pred ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccH-HHHHHHHHhcCC
Confidence 0011 11246889999999999 1 1122 235666666676
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=5.6e-07 Score=88.30 Aligned_cols=92 Identities=18% Similarity=0.083 Sum_probs=62.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCC----CCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPL----FDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF----~D~SFDlV~s~~~L 293 (365)
.+||+|||+|.++..+++.+..|++++ +++.+.+.+.+ .|+ +.++.+++..+.. .+++||+|++.--.
T Consensus 212 ~VLDlg~G~G~~~~~la~~~~~v~~vD--~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 212 RALDVFSYAGGFALHLALGFREVVAVD--SSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp EEEEETCTTTHHHHHHHHHEEEEEEEE--SCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred eEEEeeeccCHHHHHHHHhCCEEEEEE--CCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 469999999999999998765666644 44666655443 243 5678888765422 26799999984211
Q ss_pred hccc------ChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWI------PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~------d~~~le~aL~Ei~RVLRPGG 317 (365)
.... .......++.++.++|+|||
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 319 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGG 319 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 0000 01234568899999999999
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-06 Score=81.58 Aligned_cols=65 Identities=6% Similarity=-0.006 Sum_probs=49.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCC----CccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFD----GVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D----~SFDlV~s~~ 291 (365)
.+||||||+|.++..|++++..|+++++ +..+.+.+.++ +.+.++.+|+..++|++ +.|| |+++.
T Consensus 32 ~VLEIG~G~G~lt~~La~~~~~V~avEi--d~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 32 TLVEIGPGRGALTDYLLTECDNLALVEI--DRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VVGNL 104 (255)
T ss_dssp EEEEECCTTTTTHHHHTTTSSEEEEEEC--CHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EEEEC
T ss_pred EEEEEcccccHHHHHHHHhCCEEEEEEC--CHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EEecC
Confidence 4699999999999999999888887554 46777666543 35678999999998864 5688 55543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.2e-06 Score=81.83 Aligned_cols=104 Identities=12% Similarity=0.145 Sum_probs=70.8
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHH----HcC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
++||+|||+|.|+..++.+| ..|++.++| +.+.+.+. ..| .+.++.+|+..++ ..+.||.|++..-.
T Consensus 128 ~VlD~~aG~G~~~i~~a~~g~~~V~avD~n--p~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p~-- 202 (278)
T 3k6r_A 128 LVVDMFAGIGHLSLPIAVYGKAKVIAIEKD--PYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYVV-- 202 (278)
T ss_dssp EEEETTCTTTTTTHHHHHHTCCEEEEECCC--HHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCCS--
T ss_pred EEEEecCcCcHHHHHHHHhcCCeEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCCC--
Confidence 56999999999999999887 578765554 44444433 233 3667888988876 46899999876421
Q ss_pred ccChhhHHHHHHHHHhhhCCCC--------Ccch----hhhhHHHHHHhhCCce
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG--------KASD----LENVYGPLIGKLGYKK 337 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG--------~~~~----l~~~~~~~l~~~gfk~ 337 (365)
. .+.++.++.++||||| ..++ ..+......+..||+.
T Consensus 203 ---~--~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 203 ---R--THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp ---S--GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred ---c--HHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence 1 1246778889999999 1111 1233556777888853
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.9e-06 Score=85.61 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=33.5
Q ss_pred CCCCCCCccceeEEcchhhcccCh------------------------------------hhHHHHHHHHHhhhCCCC
Q 017839 276 RLPLFDGVLDVVRCGHAVNRWIPV------------------------------------IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 276 ~LPF~D~SFDlV~s~~~L~~w~d~------------------------------------~~le~aL~Ei~RVLRPGG 317 (365)
.-.|++++||+|||+.+| ||... .++..+|+..+|+|||||
T Consensus 143 ~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG 219 (374)
T 3b5i_A 143 RRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGG 219 (374)
T ss_dssp SCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred cccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 346899999999999999 79741 134456889999999999
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.1e-06 Score=80.40 Aligned_cols=90 Identities=10% Similarity=-0.056 Sum_probs=62.5
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc----CC-CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR----GL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R----g~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
..|||||||+|-++..+... ..+++++++ ++.+.+++.++ |. ..+.+.+.. .+-+.+.||+|.+.-++++
T Consensus 134 ~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DI--d~~~le~a~~~l~~~g~~~~~~v~D~~-~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 134 NTLRDLACGLNPLAAPWMGLPAETVYIASDI--DARLVGFVDEALTRLNVPHRTNVADLL-EDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp SEEEETTCTTGGGCCTTTTCCTTCEEEEEES--BHHHHHHHHHHHHHTTCCEEEEECCTT-TSCCCSCCSEEEETTCHHH
T ss_pred ceeeeeccCccHHHHHHHhhCCCCEEEEEeC--CHHHHHHHHHHHHhcCCCceEEEeeec-ccCCCCCcchHHHHHHHHH
Confidence 35699999999999888775 367776555 47777765442 43 223334432 2336788999999999987
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+.. .. ++.++...|+|||
T Consensus 211 Le~q~-kg-~g~~ll~aL~~~~ 230 (281)
T 3lcv_B 211 LETQQ-RG-SGWEVIDIVNSPN 230 (281)
T ss_dssp HHHHS-TT-HHHHHHHHSSCSE
T ss_pred hhhhh-hH-HHHHHHHHhCCCC
Confidence 65432 22 4449999999999
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-06 Score=93.15 Aligned_cols=110 Identities=21% Similarity=0.145 Sum_probs=72.2
Q ss_pred eEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHHHHH----cC----CCcEEeccCCC-CCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEAAAL----RG----LVPLHVPLQQR-LPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~a~~----Rg----~v~~~~g~ae~-LPF~D~SFDlV~s~~~L 293 (365)
.|||+|||||.++..++..|.. |+++ |++..+.+.+.+ .| .+.++.+++.. ++..+++||+|++.--.
T Consensus 542 ~VLDlg~GtG~~sl~aa~~ga~~V~aV--D~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~ 619 (703)
T 3v97_A 542 DFLNLFSYTGSATVHAGLGGARSTTTV--DMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT 619 (703)
T ss_dssp EEEEESCTTCHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred cEEEeeechhHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence 4599999999999999988754 7664 455666665543 23 25678888655 56677899999984310
Q ss_pred --------hcccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCc
Q 017839 294 --------NRWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYK 336 (365)
Q Consensus 294 --------~~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk 336 (365)
..|.........+.++.|+||||| ...... .-...+++.||+
T Consensus 620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~-~~~~~l~~~g~~ 675 (703)
T 3v97_A 620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFR-MDLDGLAKLGLK 675 (703)
T ss_dssp BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCC-CCHHHHHHTTEE
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-cCHHHHHHcCCc
Confidence 011111245568899999999999 111111 013467888876
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7e-06 Score=82.44 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=58.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||+|||+|.++..|++.+..|+++++ ++.+.+.+.+ .|+ +.++.+++.+++. + +||+|++.-......
T Consensus 293 ~VLDlgcG~G~~sl~la~~~~~V~gvD~--s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr~g~~- 367 (425)
T 2jjq_A 293 KILDMYSGVGTFGIYLAKRGFNVKGFDS--NEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPRAGLH- 367 (425)
T ss_dssp EEEEETCTTTHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCTTCSC-
T ss_pred EEEEeeccchHHHHHHHHcCCEEEEEEC--CHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCccchH-
Confidence 4599999999999999998888887554 4666655433 243 6788889888753 2 899999854321111
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
+.++.. .+.|+|||
T Consensus 368 ----~~~~~~-l~~l~p~g 381 (425)
T 2jjq_A 368 ----PRLVKR-LNREKPGV 381 (425)
T ss_dssp ----HHHHHH-HHHHCCSE
T ss_pred ----HHHHHH-HHhcCCCc
Confidence 123444 45699999
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.03 E-value=9.4e-06 Score=80.71 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=62.0
Q ss_pred eEEEEcCcccHHHHHHhhcC----------------------------------------CeEEEeccCCChhHHHHHHH
Q 017839 224 LGIDVGGATGSFAARMKLYN----------------------------------------ITILTTTMNLGAPYSEAAAL 263 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g----------------------------------------v~Vv~~~ldl~~~~~e~a~~ 263 (365)
.+||.+||+|+++...+..+ ..|+++++ +..+.+.+.+
T Consensus 204 ~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDi--d~~al~~Ar~ 281 (393)
T 3k0b_A 204 PFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDI--DARLIEIAKQ 281 (393)
T ss_dssp CEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEES--CHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEEC--CHHHHHHHHH
Confidence 45999999999987766542 34776554 4666655433
Q ss_pred ----cCC---CcEEeccCCCCCCCCCccceeEEc--chhhcccChhhHHHHHHHHHhhhCC--CC
Q 017839 264 ----RGL---VPLHVPLQQRLPLFDGVLDVVRCG--HAVNRWIPVIMMEFLFYDVDRVLRG--GG 317 (365)
Q Consensus 264 ----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~--~~L~~w~d~~~le~aL~Ei~RVLRP--GG 317 (365)
.|+ +.+..+++.++++++ +||+|+++ +... ..+...++.++.++.++||+ ||
T Consensus 282 Na~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~NPPYg~r-l~~~~~l~~ly~~lg~~lk~~~g~ 344 (393)
T 3k0b_A 282 NAVEAGLGDLITFRQLQVADFQTED-EYGVVVANPPYGER-LEDEEAVRQLYREMGIVYKRMPTW 344 (393)
T ss_dssp HHHHTTCTTCSEEEECCGGGCCCCC-CSCEEEECCCCCCS-HHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHcCCCCceEEEECChHhCCCCC-CCCEEEECCCCccc-cCCchhHHHHHHHHHHHHhcCCCC
Confidence 343 678999999998754 99999998 3322 22223455677788888887 77
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.2e-05 Score=77.91 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=63.7
Q ss_pred eEEEEcCcccHHHHHHhhcC----------------------------------------CeEEEeccCCChhHHHHHHH
Q 017839 224 LGIDVGGATGSFAARMKLYN----------------------------------------ITILTTTMNLGAPYSEAAAL 263 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g----------------------------------------v~Vv~~~ldl~~~~~e~a~~ 263 (365)
.+||.+||+|+++...+..+ ..++++++ +..+.+.+.+
T Consensus 197 ~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDi--d~~al~~Ar~ 274 (384)
T 3ldg_A 197 PFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDF--DGRMVEIARK 274 (384)
T ss_dssp CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEES--CHHHHHHHHH
T ss_pred eEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEEC--CHHHHHHHHH
Confidence 46999999999987776532 34776555 4666655432
Q ss_pred ----cCC---CcEEeccCCCCCCCCCccceeEEc--chhhcccChhhHHHHHHHHHhhhCC--CC
Q 017839 264 ----RGL---VPLHVPLQQRLPLFDGVLDVVRCG--HAVNRWIPVIMMEFLFYDVDRVLRG--GG 317 (365)
Q Consensus 264 ----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~--~~L~~w~d~~~le~aL~Ei~RVLRP--GG 317 (365)
.|+ +.+..+++.+++.++ +||+|+++ +... ..+...++.++.++.++||+ ||
T Consensus 275 Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~r-l~~~~~l~~ly~~lg~~lk~~~g~ 337 (384)
T 3ldg_A 275 NAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGER-LLDDKAVDILYNEMGETFAPLKTW 337 (384)
T ss_dssp HHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTT-TSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhc-cCCHHHHHHHHHHHHHHHhhCCCc
Confidence 343 678889999998764 99999998 4332 33445567788888889987 77
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.7e-06 Score=76.77 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=50.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCCh-------hHHHHHHHc-------CCCcEEeccCCCC-C-CCC--Cccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGA-------PYSEAAALR-------GLVPLHVPLQQRL-P-LFD--GVLD 285 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~-------~~~e~a~~R-------g~v~~~~g~ae~L-P-F~D--~SFD 285 (365)
.+||+|||+|.++..+++.|..|+++++ +. .+.+.+.+. +.+.++.+++..+ + +++ ++||
T Consensus 86 ~VLDlgcG~G~~a~~lA~~g~~V~~vD~--s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD 163 (258)
T 2r6z_A 86 TVWDATAGLGRDSFVLASLGLTVTAFEQ--HPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPD 163 (258)
T ss_dssp CEEETTCTTCHHHHHHHHTTCCEEEEEC--CHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred eEEEeeCccCHHHHHHHHhCCEEEEEEC--ChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence 3599999999999999999888887554 45 454444321 2367888887763 4 555 8999
Q ss_pred eeEEcchhhc
Q 017839 286 VVRCGHAVNR 295 (365)
Q Consensus 286 lV~s~~~L~~ 295 (365)
+|++.-.+.+
T Consensus 164 ~V~~dP~~~~ 173 (258)
T 2r6z_A 164 IVYLDPMYPE 173 (258)
T ss_dssp EEEECCCC--
T ss_pred EEEECCCCCC
Confidence 9999766543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.5e-05 Score=76.90 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=22.8
Q ss_pred EEeccC---CCCCCCCCccceeEEcchhhcccC
Q 017839 269 LHVPLQ---QRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 269 ~~~g~a---e~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
|+.|.. ..-.|++++||+|||+.+| ||..
T Consensus 132 f~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls 163 (384)
T 2efj_A 132 LIGAMPGSFYSRLFPEESMHFLHSCYCL-HWLS 163 (384)
T ss_dssp EEEECCSCTTSCCSCTTCEEEEEEESCT-TBCS
T ss_pred EEEecchhhhhccCCCCceEEEEeccee-eecC
Confidence 444543 3468999999999999999 7974
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.7e-05 Score=78.46 Aligned_cols=91 Identities=10% Similarity=0.096 Sum_probs=63.7
Q ss_pred eEEEEcCcccHHHHHHhhcC----------------------------------------CeEEEeccCCChhHHHHHHH
Q 017839 224 LGIDVGGATGSFAARMKLYN----------------------------------------ITILTTTMNLGAPYSEAAAL 263 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g----------------------------------------v~Vv~~~ldl~~~~~e~a~~ 263 (365)
.+||.|||+|+|+..++..+ ..|+++++| ..+.+.+.+
T Consensus 198 ~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid--~~ai~~Ar~ 275 (385)
T 3ldu_A 198 VLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID--EESIDIARE 275 (385)
T ss_dssp CEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC--HHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC--HHHHHHHHH
Confidence 45999999999988876542 357775554 566655433
Q ss_pred ----cCC---CcEEeccCCCCCCCCCccceeEEcchhh-cccChhhHHHHHHHHHhhhCC--CC
Q 017839 264 ----RGL---VPLHVPLQQRLPLFDGVLDVVRCGHAVN-RWIPVIMMEFLFYDVDRVLRG--GG 317 (365)
Q Consensus 264 ----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~-~w~d~~~le~aL~Ei~RVLRP--GG 317 (365)
.|+ +.+..+++..++.+ ++||+|+++--+. .+.+...++.++.++.++||+ ||
T Consensus 276 Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~ 338 (385)
T 3ldu_A 276 NAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNW 338 (385)
T ss_dssp HHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSC
T ss_pred HHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCC
Confidence 343 67888999888865 5999999965431 222234566788889999988 66
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.2e-05 Score=75.01 Aligned_cols=127 Identities=11% Similarity=0.122 Sum_probs=84.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
.+||+||++|.|+..++++|..|++++. .++...+...+.|.++.+++..+...++.||+|+|-.+. + +.
T Consensus 214 ~vlDLGAaPGGWT~~l~~rg~~V~aVD~---~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~-~------p~ 283 (375)
T 4auk_A 214 WAVDLGACPGGWTYQLVKRNMWVYSVDN---GPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE-K------PA 283 (375)
T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEEECS---SCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS-C------HH
T ss_pred EEEEeCcCCCHHHHHHHHCCCEEEEEEh---hhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC-C------hH
Confidence 4699999999999999999999887553 244444455566788889988888788899999996654 2 12
Q ss_pred HHHHHHHhhhCCCC----------Cc----chhh---hhHHHHHHhhCCceeeEEeecCCCCCCCceEEEEeeecCCC
Q 017839 304 FLFYDVDRVLRGGG----------KA----SDLE---NVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTALLQKPVS 364 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG----------~~----~~l~---~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sall~KP~~ 364 (365)
..+.-+.+.|..|- .. +++. ......++..||.-. . .++.+--++.| +|..++||..
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~-l-~akhL~hdReE--iTV~~rk~~a 357 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQ-I-QARQLYHDREE--VTVHVRRIWA 357 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEE-E-EEECCTTCSSE--EEEEEEECCC
T ss_pred HhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchh-h-eehhhccCCcE--EEEEEEechh
Confidence 34555556666553 11 1111 123456677787632 1 23455445677 4778899865
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.92 E-value=9e-06 Score=77.38 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=44.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCe----EEEeccCCChhHHHHHHHc--CCCcEEeccCCCCCCCC
Q 017839 224 LGIDVGGATGSFAARMKLYNIT----ILTTTMNLGAPYSEAAALR--GLVPLHVPLQQRLPLFD 281 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~----Vv~~~ldl~~~~~e~a~~R--g~v~~~~g~ae~LPF~D 281 (365)
.|||||||+|.++..|++++.. |+++++ +..+.+.+.++ +.+.++.+|+.++||++
T Consensus 45 ~VLEIG~G~G~lt~~La~~~~~~~~~V~avDi--d~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 45 RMVEIGPGLGALTGPVIARLATPGSPLHAVEL--DRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp EEEEECCTTSTTHHHHHHHHCBTTBCEEEEEC--CHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred EEEEEccccHHHHHHHHHhCCCcCCeEEEEEC--CHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 4599999999999999988666 876554 56777766654 34678999999999865
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.1e-05 Score=79.83 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=58.0
Q ss_pred CCCceEEEEcCcccHHHHHHhhc------------C------CeEEEeccCCChhHHHHHHHcC------CCcEEecc--
Q 017839 220 SVIRLGIDVGGATGSFAARMKLY------------N------ITILTTTMNLGAPYSEAAALRG------LVPLHVPL-- 273 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~------------g------v~Vv~~~ldl~~~~~e~a~~Rg------~v~~~~g~-- 273 (365)
..++| +|+||++|.++..+... + +.|.-.++- +-.++.....-. ..-|+.|.
T Consensus 51 ~~~~I-aDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp-~NDFntlF~~L~~~~~~~~~~f~~gvpg 128 (359)
T 1m6e_X 51 TRLAI-ADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLP-GNDFNAIFRSLPIENDVDGVCFINGVPG 128 (359)
T ss_dssp SEECC-EEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECT-TSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred CceEE-EecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCC-chHHHHHHHhcchhcccCCCEEEEecch
Confidence 44666 99999999876554432 1 333332321 223433221100 11244443
Q ss_pred -CCCCCCCCCccceeEEcchhhcccChh-------------------------------hHHHHHHHHHhhhCCCC
Q 017839 274 -QQRLPLFDGVLDVVRCGHAVNRWIPVI-------------------------------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 274 -ae~LPF~D~SFDlV~s~~~L~~w~d~~-------------------------------~le~aL~Ei~RVLRPGG 317 (365)
-..-.|++++||+|||+.+| ||.... ++..+|+-..|.|+|||
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG 203 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG 203 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC
T ss_pred hhhhccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34578999999999999999 797431 22334777899999999
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.1e-05 Score=73.53 Aligned_cols=124 Identities=13% Similarity=0.062 Sum_probs=72.1
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCC-C-CCC--------------
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRL-P-LFD-------------- 281 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~L-P-F~D-------------- 281 (365)
.+||+|||+|.|+..+++.+..|++++ .++.+.+.+.+ .|+ +.++.++++++ + +.+
T Consensus 216 ~vLDl~cG~G~~~l~la~~~~~V~gvd--~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 216 DLLELYCGNGNFSLALARNFDRVLATE--IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp EEEEESCTTSHHHHHHGGGSSEEEEEC--CCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred EEEEccCCCCHHHHHHHhcCCEEEEEE--CCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 369999999999999998767788754 44666554432 343 56788877654 1 222
Q ss_pred CccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceE
Q 017839 282 GVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVY 354 (365)
Q Consensus 282 ~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y 354 (365)
++||+|+..- +.. .+..++.++|+||| ....+.+....+.+ ||+..+.... -..+....+=
T Consensus 294 ~~fD~Vv~dP------Pr~---g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~--~y~~~~~~~~-D~FP~T~HvE 361 (369)
T 3bt7_A 294 YQCETIFVDP------PRS---GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQ--THKVERLALF-DQFPYTHHMQ 361 (369)
T ss_dssp CCEEEEEECC------CTT---CCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH--HEEEEEEEEE-CCSTTSSCCE
T ss_pred CCCCEEEECc------Ccc---ccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhh--CcEEEEEEee-ccCCCCCcEE
Confidence 4899998632 111 13457888899999 22222333333332 5765443322 2234333333
Q ss_pred EEEeeec
Q 017839 355 LTALLQK 361 (365)
Q Consensus 355 ~sall~K 361 (365)
.-|+|+|
T Consensus 362 ~v~ll~r 368 (369)
T 3bt7_A 362 CGVLLTA 368 (369)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 4466664
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.89 E-value=2.1e-05 Score=74.26 Aligned_cols=108 Identities=14% Similarity=-0.040 Sum_probs=64.9
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHH-------HHHHHc--------CCCcEEeccCCC-CCCCCCcccee
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYS-------EAAALR--------GLVPLHVPLQQR-LPLFDGVLDVV 287 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~-------e~a~~R--------g~v~~~~g~ae~-LPF~D~SFDlV 287 (365)
.|||+|||+|..+..++++|..|++++.+ ..+. +.+... ..+.++.+++.+ |+...+.||+|
T Consensus 91 ~VLDl~~G~G~dal~lA~~g~~V~~vE~~--~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 91 DVVDATAGLGRDAFVLASVGCRVRMLERN--PVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CEEETTCTTCHHHHHHHHHTCCEEEEECC--HHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred EEEEcCCcCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 45999999999999999998888875544 4321 111110 125678887655 55434479999
Q ss_pred EEcchhhcccChhhHHHHHHHHHhhhCCCC-CcchhhhhHHHHHHhhCCcee
Q 017839 288 RCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 288 ~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-~~~~l~~~~~~~l~~~gfk~i 338 (365)
++.-.+.+ ... ..++++..|+||+.| ..++.++ +.....++.-+++
T Consensus 169 ~lDP~y~~-~~~---saavkk~~~~lr~l~~~~~~~~~-ll~~a~~~a~~rv 215 (258)
T 2oyr_A 169 YLDPMFPH-KQK---SALVKKEMRVFQSLVGPDLDADG-LLEPARLLATKRV 215 (258)
T ss_dssp EECCCCCC-CCC--------HHHHHHHHHSCCCTTGGG-GHHHHHHHCSSEE
T ss_pred EEcCCCCC-ccc---chHHHHHHHHHHHhhcCCccHHH-HHHHHHHhcCCeE
Confidence 99766633 321 147788889998888 4444444 3333434433343
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=97.86 E-value=2.3e-05 Score=78.42 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=60.2
Q ss_pred EEEEcCcccHHHHHHhhc---------------CCeEEEeccCCChhHHHHHH----HcCC----CcEEeccCCCCCCCC
Q 017839 225 GIDVGGATGSFAARMKLY---------------NITILTTTMNLGAPYSEAAA----LRGL----VPLHVPLQQRLPLFD 281 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~---------------gv~Vv~~~ldl~~~~~e~a~----~Rg~----v~~~~g~ae~LPF~D 281 (365)
|||.|||+|.|+..++++ +..+.|.++| ..+.+.+. .+|. +.+..+++...+..
T Consensus 175 VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~--~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~- 251 (445)
T 2okc_A 175 VCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT--PLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS- 251 (445)
T ss_dssp EEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC--HHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS-
T ss_pred EeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCC--HHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc-
Confidence 599999999998887653 3567776554 44444433 2343 56788887776654
Q ss_pred CccceeEEcchhhc--ccChh------------hHHHHHHHHHhhhCCCC
Q 017839 282 GVLDVVRCGHAVNR--WIPVI------------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 282 ~SFDlV~s~~~L~~--w~d~~------------~le~aL~Ei~RVLRPGG 317 (365)
..||+|+++--+.. +.+.. ....++.++.++|||||
T Consensus 252 ~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG 301 (445)
T 2okc_A 252 TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGG 301 (445)
T ss_dssp SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCC
Confidence 38999999854432 21110 01257899999999999
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.1e-05 Score=73.35 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=44.5
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHc--CCCcEEeccCCCCCCCCC
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALR--GLVPLHVPLQQRLPLFDG 282 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~R--g~v~~~~g~ae~LPF~D~ 282 (365)
.+||||||+|.++..|++++ ..|++++ ++..+.+.+.++ ..+.++.+|+..++|++.
T Consensus 34 ~VLDiG~G~G~lt~~L~~~~~~~v~avE--id~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~ 93 (249)
T 3ftd_A 34 TVVEVGGGTGNLTKVLLQHPLKKLYVIE--LDREMVENLKSIGDERLEVINEDASKFPFCSL 93 (249)
T ss_dssp EEEEEESCHHHHHHHHTTSCCSEEEEEC--CCHHHHHHHTTSCCTTEEEECSCTTTCCGGGS
T ss_pred EEEEEcCchHHHHHHHHHcCCCeEEEEE--CCHHHHHHHHhccCCCeEEEEcchhhCChhHc
Confidence 46999999999999999985 7787654 456777766554 235688899999998764
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.6e-05 Score=74.99 Aligned_cols=128 Identities=12% Similarity=0.072 Sum_probs=68.7
Q ss_pred eEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHH---cC--CCcEEeccCCCCCCCCCccceeEEcchhh--
Q 017839 224 LGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAAL---RG--LVPLHVPLQQRLPLFDGVLDVVRCGHAVN-- 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~---Rg--~v~~~~g~ae~LPF~D~SFDlV~s~~~L~-- 294 (365)
.|||+|||+|.|+...+++ ++ .|++.++ +..+.+.+.. .+ ++.+ ...++-..+..+.+|+|.|-.+..
T Consensus 93 ~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv--G~d~~~~pi~~~~~g~~ii~~-~~~~dv~~l~~~~~DvVLSDmApnsG 169 (282)
T 3gcz_A 93 IVVDLGCGRGGWSYYAASLKNVKKVMAFTL--GVQGHEKPIMRTTLGWNLIRF-KDKTDVFNMEVIPGDTLLCDIGESSP 169 (282)
T ss_dssp EEEEETCTTCHHHHHHHTSTTEEEEEEECC--CCTTSCCCCCCCBTTGGGEEE-ECSCCGGGSCCCCCSEEEECCCCCCS
T ss_pred EEEEeCCCCCHHHHHHHHhcCCCeeeeEEe--ccCccccccccccCCCceEEe-eCCcchhhcCCCCcCEEEecCccCCC
Confidence 5799999999999988864 43 3444333 2111000000 01 1112 222222345678999999977653
Q ss_pred -cccChhhHHHHHHHHHhhhCCC--C-------C--cchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEE
Q 017839 295 -RWIPVIMMEFLFYDVDRVLRGG--G-------K--ASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTA 357 (365)
Q Consensus 295 -~w~d~~~le~aL~Ei~RVLRPG--G-------~--~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sa 357 (365)
++.|....-.+|.=+.++|||| | . +++..+ +...+++. |+++++..- -.-.+..|+|+-+
T Consensus 170 ~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~-l~~~lk~~-F~~V~~~KP-aSR~~S~E~Y~V~ 241 (282)
T 3gcz_A 170 SIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIME-ELSRLQLK-HGGGLVRVP-LSRNSTHEMYWVS 241 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHH-HHHHHHHH-HCCEEECCT-TSCTTCCCEEEET
T ss_pred ChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHH-HHHHHHHh-cCCEEEEcC-CCcccCcceeEEE
Confidence 1222211112344557899999 9 3 555544 33344443 666654433 2212688999865
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00032 Score=67.50 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=51.0
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--C-CeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--N-ITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRL 277 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--g-v~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~L 277 (365)
.+..+++..+ |. .|||+|||+|..+..|++. + ..|++.++ +..+.+.+.+ .|. +.++.+++..+
T Consensus 93 l~~~~l~~~~---g~--~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~--~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~ 165 (309)
T 2b9e_A 93 LPAMLLDPPP---GS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDL--DAKRLASMATLLARAGVSCCELAEEDFLAV 165 (309)
T ss_dssp HHHHHHCCCT---TC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHHHHHTTCCSEEEEECCGGGS
T ss_pred HHHHHhCCCC---CC--EEEEeCCChhHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHcCCCeEEEEeCChHhc
Confidence 3444555544 53 4599999999999999874 2 57776544 4555554433 253 56777888877
Q ss_pred CCCC---CccceeEE
Q 017839 278 PLFD---GVLDVVRC 289 (365)
Q Consensus 278 PF~D---~SFDlV~s 289 (365)
+..+ ++||.|++
T Consensus 166 ~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 166 SPSDPRYHEVHYILL 180 (309)
T ss_dssp CTTCGGGTTEEEEEE
T ss_pred CccccccCCCCEEEE
Confidence 6543 57999996
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00016 Score=76.93 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=57.8
Q ss_pred eEEEEcCcccHHHHHHhhcC--------------------------------------------CeEEEeccCCChhHHH
Q 017839 224 LGIDVGGATGSFAARMKLYN--------------------------------------------ITILTTTMNLGAPYSE 259 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--------------------------------------------v~Vv~~~ldl~~~~~e 259 (365)
.+||.+||+|+|+...+..+ ..+++.++| ..+.+
T Consensus 193 ~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did--~~av~ 270 (703)
T 3v97_A 193 PLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSD--ARVIQ 270 (703)
T ss_dssp CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESC--HHHHH
T ss_pred eEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECC--HHHHH
Confidence 45999999999977665431 467776554 55655
Q ss_pred HHH----HcCC---CcEEeccCCCC--CCCCCccceeEEc--chhhcccChhhHHHH---HHHHHhhhCCCC
Q 017839 260 AAA----LRGL---VPLHVPLQQRL--PLFDGVLDVVRCG--HAVNRWIPVIMMEFL---FYDVDRVLRGGG 317 (365)
Q Consensus 260 ~a~----~Rg~---v~~~~g~ae~L--PF~D~SFDlV~s~--~~L~~w~d~~~le~a---L~Ei~RVLRPGG 317 (365)
.+. ..|+ +.+..+++.++ |+.+++||+|+++ +... +.+...++.. +.++.|.+.|||
T Consensus 271 ~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~R-lg~~~~l~~ly~~l~~~lk~~~~g~ 341 (703)
T 3v97_A 271 RARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGER-LDSEPALIALHSLLGRIMKNQFGGW 341 (703)
T ss_dssp HHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcccc-ccchhHHHHHHHHHHHHHHhhCCCC
Confidence 443 2354 57888888877 6666699999998 3321 2222233333 455566667899
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=5.7e-05 Score=72.68 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=55.1
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-----CCCcEEeccCCCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-----GLVPLHVPLQQRLPL 279 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-----g~v~~~~g~ae~LPF 279 (365)
+++++++.....++. ++||+|||+|.++..++++ +..|++++ .+..+.+.+.++ ..+.++.++...++.
T Consensus 14 Ll~e~l~~L~~~~g~--~vLD~g~G~G~~s~~la~~~~~~~VigvD--~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~ 89 (301)
T 1m6y_A 14 MVREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGID--VDSEVLRIAEEKLKEFSDRVSLFKVSYREADF 89 (301)
T ss_dssp THHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence 455555543221242 4699999999999999987 47787754 456777766543 246788888887762
Q ss_pred --C---CCccceeEEcc
Q 017839 280 --F---DGVLDVVRCGH 291 (365)
Q Consensus 280 --~---D~SFDlV~s~~ 291 (365)
. .+.||.|++..
T Consensus 90 ~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 90 LLKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHHTTCSCEEEEEEEC
T ss_pred HHHhcCCCCCCEEEEcC
Confidence 2 26899999754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.49 E-value=4e-05 Score=77.11 Aligned_cols=65 Identities=15% Similarity=-0.029 Sum_probs=48.7
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc------CC--CcEEeccCCC-CCC-CCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR------GL--VPLHVPLQQR-LPL-FDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R------g~--v~~~~g~ae~-LPF-~D~SFDlV~s~ 290 (365)
.+||+|||+|.++..|++.+..|+++++ +..+.+.+.++ |. +.++.+++.+ |+. .+++||+|++.
T Consensus 96 ~VLDLgcG~G~~al~LA~~g~~V~~VD~--s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 96 KVVDLTGGLGIDFIALMSKASQGIYIER--NDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp EEEESSCSSSHHHHHHHTTCSEEEEEES--CHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred EEEEeCCCchHHHHHHHhcCCEEEEEEC--CHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4599999999999999988888887555 46666555432 54 6788888776 353 35789999984
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.49 E-value=6.5e-05 Score=70.29 Aligned_cols=65 Identities=5% Similarity=-0.101 Sum_probs=46.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCe--EEEeccCCChhHHHHHHHcC----CCcEEeccCCCCCCCCC-----ccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLYNIT--ILTTTMNLGAPYSEAAALRG----LVPLHVPLQQRLPLFDG-----VLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~--Vv~~~ldl~~~~~e~a~~Rg----~v~~~~g~ae~LPF~D~-----SFDlV~s~~~ 292 (365)
.|||||||+|.++. +. ++.. |+++ |++..+.+.+.++- .+.++.+|+..++|++. ..|.|+++.-
T Consensus 24 ~VLEIG~G~G~lt~-l~-~~~~~~v~av--Eid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 24 AMVEIGPGLAALTE-PV-GERLDQLTVI--ELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLP 99 (252)
T ss_dssp CEEEECCTTTTTHH-HH-HTTCSCEEEE--CCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEEECC
T ss_pred EEEEECCCCcHHHH-hh-hCCCCeEEEE--ECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEECCC
Confidence 35999999999999 75 4555 7764 55577877766542 36788899999987643 3467777653
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00074 Score=65.39 Aligned_cols=145 Identities=9% Similarity=0.032 Sum_probs=73.1
Q ss_pred cchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHH---HH--HcCCCcEEeccCCCC
Q 017839 205 DLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEA---AA--LRGLVPLHVPLQQRL 277 (365)
Q Consensus 205 ~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~---a~--~Rg~v~~~~g~ae~L 277 (365)
.|-+.++.+- ..... .+.+||+||++|.|+..++++ ++ .|++.++ +..+... .. .-.++.+..+ ..-.
T Consensus 67 a~KL~ei~ek-~l~~~-g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl--g~~~~~~P~~~~~~~~~iv~~~~~-~di~ 141 (300)
T 3eld_A 67 AAKIRWLHER-GYLRI-TGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL--GIEGHEKPIHMQTLGWNIVKFKDK-SNVF 141 (300)
T ss_dssp HHHHHHHHHH-TSCCC-CEEEEEETCTTCHHHHHHHTSTTEEEEEEECC--CCTTSCCCCCCCBTTGGGEEEECS-CCTT
T ss_pred HHHHHHHHHh-CCCCC-CCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe--ccccccccccccccCCceEEeecC-ceee
Confidence 4555555543 21112 256799999999999999985 54 3444333 2111000 00 0011222222 2223
Q ss_pred CCCCCccceeEEcchhh--c-ccChhhHHHHHHHHHhhhCCC-C-------C--cchhhhhHHHHHHhhCCceeeEEeec
Q 017839 278 PLFDGVLDVVRCGHAVN--R-WIPVIMMEFLFYDVDRVLRGG-G-------K--ASDLENVYGPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 278 PF~D~SFDlV~s~~~L~--~-w~d~~~le~aL~Ei~RVLRPG-G-------~--~~~l~~~~~~~l~~~gfk~i~w~v~~ 344 (365)
-+..+.||+|+|-.+-. + ..|....-..|.=+.++|+|| | . +++..+ +...+++. |+++.+..-
T Consensus 142 ~l~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~-ll~~lk~~-F~~V~~~KP- 218 (300)
T 3eld_A 142 TMPTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIE-KLERLQLR-FGGGIVRVP- 218 (300)
T ss_dssp TSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHH-HHHHHHHH-HCCEEECCT-
T ss_pred ecCCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHH-HHHHHHHh-CCcEEEEeC-
Confidence 35578999999976543 0 111111012244447899999 9 3 555444 33334333 565554322
Q ss_pred CCCCCCCceEEEE
Q 017839 345 KPNSKNGEVYLTA 357 (365)
Q Consensus 345 K~d~~~~~~y~sa 357 (365)
-.-.+..|+|+-+
T Consensus 219 aSR~~S~E~Y~V~ 231 (300)
T 3eld_A 219 FSRNSTHEMYYIS 231 (300)
T ss_dssp TSCTTCCCEEEES
T ss_pred CCCCCChHHeeec
Confidence 1112678999854
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00043 Score=73.23 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=58.7
Q ss_pred CceEEEEcCcccHH---HHHHhhcC---CeEEEeccCCChhHHHH----HHHcC---CCcEEeccCCCCCCCCCccceeE
Q 017839 222 IRLGIDVGGATGSF---AARMKLYN---ITILTTTMNLGAPYSEA----AALRG---LVPLHVPLQQRLPLFDGVLDVVR 288 (365)
Q Consensus 222 iRi~LDIGCGtG~f---aa~Lae~g---v~Vv~~~ldl~~~~~e~----a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~ 288 (365)
..+|||||||+|-+ +.+.++++ +.|.+++.+ ++... ..+.| .|.++.|+.+.+-.+ +.+|+|+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn---p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIV 433 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN---PNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIV 433 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC---HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC---HHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEE
Confidence 35789999999977 55555543 345554443 23222 22333 478899999887554 6899999
Q ss_pred EcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|-..-........+ ..|.-.+|.|||||
T Consensus 434 SEwMG~fLl~E~ml-evL~Ardr~LKPgG 461 (637)
T 4gqb_A 434 SELLGSFADNELSP-ECLDGAQHFLKDDG 461 (637)
T ss_dssp CCCCBTTBGGGCHH-HHHHHHGGGEEEEE
T ss_pred EEcCcccccccCCH-HHHHHHHHhcCCCc
Confidence 86543222222233 57888899999999
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0002 Score=67.34 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=41.3
Q ss_pred CcEEeccCCC-CCCCCC----ccceeEEc-chhh-c---ccChhhHHHHHHHHHhhhCCCC---CcchhhhhHHHHHHhh
Q 017839 267 VPLHVPLQQR-LPLFDG----VLDVVRCG-HAVN-R---WIPVIMMEFLFYDVDRVLRGGG---KASDLENVYGPLIGKL 333 (365)
Q Consensus 267 v~~~~g~ae~-LPF~D~----SFDlV~s~-~~L~-~---w~d~~~le~aL~Ei~RVLRPGG---~~~~l~~~~~~~l~~~ 333 (365)
+.++.||+.. ||..++ .||+|+.- +.-. + |. +.++.++.|+||||| ....- ......+...
T Consensus 152 l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~-----~~~l~~l~~~L~pGG~l~tysaa-~~vrr~L~~a 225 (257)
T 2qy6_A 152 LDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWT-----QNLFNAMARLARPGGTLATFTSA-GFVRRGLQEA 225 (257)
T ss_dssp EEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCC-----HHHHHHHHHHEEEEEEEEESCCB-HHHHHHHHHH
T ss_pred EEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcC-----HHHHHHHHHHcCCCcEEEEEeCC-HHHHHHHHHC
Confidence 3467777655 664433 79999973 2111 1 32 258999999999999 21111 1345577789
Q ss_pred CCcee
Q 017839 334 GYKKV 338 (365)
Q Consensus 334 gfk~i 338 (365)
||+..
T Consensus 226 GF~v~ 230 (257)
T 2qy6_A 226 GFTMQ 230 (257)
T ss_dssp TEEEE
T ss_pred CCEEE
Confidence 99844
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00014 Score=71.87 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=56.5
Q ss_pred eEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHHH----Hc---------------CC--CcEEeccCCCCCC-
Q 017839 224 LGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAAA----LR---------------GL--VPLHVPLQQRLPL- 279 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~----~R---------------g~--v~~~~g~ae~LPF- 279 (365)
.+||+|||+|.++..++++ + ..|++.++| ..+.+.+. .. |+ +.++.+|+..+..
T Consensus 50 ~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~--~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 50 IVLDALSATGIRGIRFALETPAEEVWLNDIS--EDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp EEEESSCTTSHHHHHHHHHSSCSEEEEEESC--HHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred EEEECCCchhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 3599999999999999886 4 567765544 55554443 22 43 4567777654421
Q ss_pred CCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 280 FDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 280 ~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..+.||+|+.. -. .. ....+..+.|.|||||
T Consensus 128 ~~~~fD~I~lD-P~---~~---~~~~l~~a~~~lk~gG 158 (378)
T 2dul_A 128 RHRYFHFIDLD-PF---GS---PMEFLDTALRSAKRRG 158 (378)
T ss_dssp STTCEEEEEEC-CS---SC---CHHHHHHHHHHEEEEE
T ss_pred ccCCCCEEEeC-CC---CC---HHHHHHHHHHhcCCCC
Confidence 24689999943 11 11 1257888999999999
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00038 Score=74.52 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=59.1
Q ss_pred ceEEEEcCcccHHHHH---Hhh-cC-----------CeEEEeccCCChh-HHHHHHHc---CCCcEEeccCCCCCCC---
Q 017839 223 RLGIDVGGATGSFAAR---MKL-YN-----------ITILTTTMNLGAP-YSEAAALR---GLVPLHVPLQQRLPLF--- 280 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~---Lae-~g-----------v~Vv~~~ldl~~~-~~e~a~~R---g~v~~~~g~ae~LPF~--- 280 (365)
.+|||||||+|-+... .++ .| +.|++++.+..+. ..+..... +.|.++.++.+.+..+
T Consensus 411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~ 490 (745)
T 3ua3_A 411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKD 490 (745)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccccc
Confidence 4789999999988532 221 12 3566554442111 11111122 3588999999887664
Q ss_pred --CCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 281 --DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 281 --D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+..|+|+|-..-. +.+.+.....|.-+.|.|||||
T Consensus 491 ~~~ekVDIIVSElmGs-fl~nEL~pe~Ld~v~r~Lkp~G 528 (745)
T 3ua3_A 491 RGFEQPDIIVSELLGS-FGDNELSPECLDGVTGFLKPTT 528 (745)
T ss_dssp TTCCCCSEEEECCCBT-TBGGGSHHHHHHTTGGGSCTTC
T ss_pred CCCCcccEEEEecccc-ccchhccHHHHHHHHHhCCCCc
Confidence 57899999876532 2233334457888899999999
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00075 Score=69.67 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=58.0
Q ss_pred EEEEcCcccHHHHHHhhc----C----------------CeEEEeccCCChhHHHHHHH----cCC-------CcEEecc
Q 017839 225 GIDVGGATGSFAARMKLY----N----------------ITILTTTMNLGAPYSEAAAL----RGL-------VPLHVPL 273 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~----g----------------v~Vv~~~ldl~~~~~e~a~~----Rg~-------v~~~~g~ 273 (365)
|||.|||+|.|...++++ + ..+.|.++| ..+.+.+.. +|. +.+..++
T Consensus 173 VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid--~~~~~lA~~nl~l~gi~~~~~~~~~I~~gD 250 (541)
T 2ar0_A 173 VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV--PGTRRLALMNCLLHDIEGNLDHGGAIRLGN 250 (541)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC--HHHHHHHHHHHHTTTCCCBGGGTBSEEESC
T ss_pred EecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCC--HHHHHHHHHHHHHhCCCccccccCCeEeCC
Confidence 499999999998777643 1 357776554 444444332 343 4577777
Q ss_pred CCCCC-CCCCccceeEEcchhh--cccC---------hhhHHHHHHHHHhhhCCCC
Q 017839 274 QQRLP-LFDGVLDVVRCGHAVN--RWIP---------VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 274 ae~LP-F~D~SFDlV~s~~~L~--~w~d---------~~~le~aL~Ei~RVLRPGG 317 (365)
+-..+ +.++.||+|+++=-+. .+.+ ...--.++..+.+.|||||
T Consensus 251 tL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG 306 (541)
T 2ar0_A 251 TLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 306 (541)
T ss_dssp TTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred CcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence 65443 5578999999975332 1110 0111257889999999999
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0015 Score=57.63 Aligned_cols=55 Identities=7% Similarity=0.045 Sum_probs=41.0
Q ss_pred EEEEcCccc-HHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCC--CccceeEEcc
Q 017839 225 GIDVGGATG-SFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFD--GVLDVVRCGH 291 (365)
Q Consensus 225 ~LDIGCGtG-~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D--~SFDlV~s~~ 291 (365)
+||||||.| ..|..|++ .|+.|++++++..+ ++++..|.-+ |..+ ..||+|.+.+
T Consensus 39 VlEVG~G~g~~vA~~La~~~g~~V~atDInp~A-----------v~~v~dDiF~-P~~~~Y~~~DLIYsir 97 (153)
T 2k4m_A 39 VVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH-----------GGIVRDDITS-PRMEIYRGAALIYSIR 97 (153)
T ss_dssp EEEETCTTCCHHHHHHHHHSCCEEEEECSSCSS-----------TTEECCCSSS-CCHHHHTTEEEEEEES
T ss_pred EEEEccCCChHHHHHHHHhCCCeEEEEECCccc-----------cceEEccCCC-CcccccCCcCEEEEcC
Confidence 499999999 69999998 89999887776421 1166666544 4444 4899999866
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0046 Score=60.98 Aligned_cols=104 Identities=14% Similarity=0.055 Sum_probs=61.0
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCC--eEEEeccCCChhHHHHHH----HcC--------CCcEEec
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNI--TILTTTMNLGAPYSEAAA----LRG--------LVPLHVP 272 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv--~Vv~~~ldl~~~~~e~a~----~Rg--------~v~~~~g 272 (365)
+...+|+..+ |. .|||+++|.|.=+..|++.+. .+++ .|.+....+.+. ..| .+.+...
T Consensus 139 l~~~~L~~~p---g~--~VLD~CAaPGGKT~~la~~~~~~~l~A--~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~ 211 (359)
T 4fzv_A 139 LPVLALGLQP---GD--IVLDLCAAPGGKTLALLQTGCCRNLAA--NDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSW 211 (359)
T ss_dssp HHHHHHCCCT---TE--EEEESSCTTCHHHHHHHHTTCEEEEEE--ECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECC
T ss_pred HHHHHhCCCC---CC--EEEEecCCccHHHHHHHHhcCCCcEEE--EcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeC
Confidence 3445555555 53 359999999999888888753 4554 454444333222 112 1334555
Q ss_pred cCCCCC-CCCCccceeE----Ecc---hhh--------cccCh------hhHHHHHHHHHhhhCCCC
Q 017839 273 LQQRLP-LFDGVLDVVR----CGH---AVN--------RWIPV------IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 273 ~ae~LP-F~D~SFDlV~----s~~---~L~--------~w~d~------~~le~aL~Ei~RVLRPGG 317 (365)
++..++ +..+.||.|. |+. .+. .|... ......|....+.|||||
T Consensus 212 D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG 278 (359)
T 4fzv_A 212 DGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 278 (359)
T ss_dssp CGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEE
T ss_pred chhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 666654 4568999998 443 111 11111 011356778899999999
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0027 Score=65.75 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=58.7
Q ss_pred eEEEEcCcccHHHHHHhhc-----CCeEEEeccCCChhHHHHHH----HcCC----CcEEeccCCCC--C-CCCCcccee
Q 017839 224 LGIDVGGATGSFAARMKLY-----NITILTTTMNLGAPYSEAAA----LRGL----VPLHVPLQQRL--P-LFDGVLDVV 287 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-----gv~Vv~~~ldl~~~~~e~a~----~Rg~----v~~~~g~ae~L--P-F~D~SFDlV 287 (365)
.|||.+||||.|...++++ ...+.|.++| ..+.+.++ .+|+ +.+..+++-.. | +.+..||+|
T Consensus 224 ~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid--~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~I 301 (542)
T 3lkd_A 224 TLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELN--TSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGV 301 (542)
T ss_dssp EEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESC--HHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEE
T ss_pred EEeecccchhHHHHHHHHHHHhccCceEEEEECc--HHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEE
Confidence 3599999999998777664 4677776665 33333332 2454 24677776554 4 567899999
Q ss_pred EEcchh-hcccC--------------------hhhHHHHHHHHHhhhC-CCC
Q 017839 288 RCGHAV-NRWIP--------------------VIMMEFLFYDVDRVLR-GGG 317 (365)
Q Consensus 288 ~s~~~L-~~w~d--------------------~~~le~aL~Ei~RVLR-PGG 317 (365)
+++=-+ ..|.. .... .++..+.+.|| |||
T Consensus 302 vaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~-~Fl~~~l~~Lk~~gG 352 (542)
T 3lkd_A 302 LMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADF-AFLLHGYYHLKQDNG 352 (542)
T ss_dssp EECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHH-HHHHHHHHTBCTTTC
T ss_pred EecCCcCCccccchhhhhhhhhhhhhhcCCCchhhH-HHHHHHHHHhCCCce
Confidence 987311 12210 0111 37889999999 999
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=65.46 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=56.2
Q ss_pred eEEEEcCcccHHHHHHhhc--C-CeEEEeccCCChhHHHHHHH----cCC----CcEEeccCCCC-C-CCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLY--N-ITILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQQRL-P-LFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--g-v~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~ae~L-P-F~D~SFDlV~s~ 290 (365)
.|||++||+|.++..++.+ | ..|++. |.++...+.+.+ .|+ +.++.+|+..+ . -..+.||+|++.
T Consensus 55 ~VLDlfaGtG~~sl~aa~~~~ga~~V~av--Di~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 55 KVADPLSASGIRAIRFLLETSCVEKAYAN--DISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp EEEESSCTTSHHHHHHHHHCSCEEEEEEE--CSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred EEEECCCcccHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 4599999999999999884 5 356654 444555554432 243 55677776432 2 225689999875
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
= .. ..+.++..+.+.|+|||
T Consensus 133 P----~g---~~~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 133 P----FG---TPVPFIESVALSMKRGG 152 (392)
T ss_dssp C----SS---CCHHHHHHHHHHEEEEE
T ss_pred C----Cc---CHHHHHHHHHHHhCCCC
Confidence 3 11 11247788899999999
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0032 Score=65.11 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=55.9
Q ss_pred eEEEEcCcccHHHHHHhhc-----------------CCeEEEeccCCChhHHHHHH----HcCC-CcE--EeccCCCC-C
Q 017839 224 LGIDVGGATGSFAARMKLY-----------------NITILTTTMNLGAPYSEAAA----LRGL-VPL--HVPLQQRL-P 278 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-----------------gv~Vv~~~ldl~~~~~e~a~----~Rg~-v~~--~~g~ae~L-P 278 (365)
.|||.+||||.|...++++ ...+.|.++| ..+.+.+. .+|+ ..+ ..+++-.. .
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid--~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESN--PTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCC--HHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCC--HHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 3599999999997766432 3456665444 44444333 2343 223 55665443 3
Q ss_pred CCCCccceeEEcchh--hcccCh-------------------------hhHHHHHHHHHhhhCCCC
Q 017839 279 LFDGVLDVVRCGHAV--NRWIPV-------------------------IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 279 F~D~SFDlV~s~~~L--~~w~d~-------------------------~~le~aL~Ei~RVLRPGG 317 (365)
+.+..||+|+++=-+ ..|... ..+ .++..+.+.|||||
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~-~Fl~~~l~~Lk~gG 389 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF-AWMLHMLYHLAPTG 389 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH-HHHHHHHHTEEEEE
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH-HHHHHHHHHhccCc
Confidence 668899999996432 223211 111 47889999999999
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0034 Score=59.90 Aligned_cols=125 Identities=13% Similarity=0.087 Sum_probs=63.8
Q ss_pred eEEEEcCcccHHHHHHhhc-CC-eEEE--eccCCC-hhHHHHHHHcC--CCcEEec-cCCCCCCCCCccceeEEcchhh-
Q 017839 224 LGIDVGGATGSFAARMKLY-NI-TILT--TTMNLG-APYSEAAALRG--LVPLHVP-LQQRLPLFDGVLDVVRCGHAVN- 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv-~Vv~--~~ldl~-~~~~e~a~~Rg--~v~~~~g-~ae~LPF~D~SFDlV~s~~~L~- 294 (365)
.|||+||+.|.++.+.+++ ++ .|.+ .+.|++ .++.- ...| ++.|..+ |...++ ...+|+|.|-.+=.
T Consensus 76 ~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~--~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSDMAPnS 151 (269)
T 2px2_A 76 KVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM--QSYGWNIVTMKSGVDVFYKP--SEISDTLLCDIGESS 151 (269)
T ss_dssp EEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC--CSTTGGGEEEECSCCGGGSC--CCCCSEEEECCCCCC
T ss_pred EEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc--cCCCceEEEeeccCCccCCC--CCCCCEEEeCCCCCC
Confidence 5699999999999999886 33 2222 233310 11100 0012 2234445 665543 56899999865321
Q ss_pred -ccc-Chh-hHHHHHHHHHhhhCCCC--------Cc--chhhhhHHHHHHhhCCceeeEEeecCCCC-CCCceEEEE
Q 017839 295 -RWI-PVI-MMEFLFYDVDRVLRGGG--------KA--SDLENVYGPLIGKLGYKKVKWATANKPNS-KNGEVYLTA 357 (365)
Q Consensus 295 -~w~-d~~-~le~aL~Ei~RVLRPGG--------~~--~~l~~~~~~~l~~~gfk~i~w~v~~K~d~-~~~~~y~sa 357 (365)
++. |.. .+. +|.=+.++|+||| .. ++..+ +...+++. |++++ +-++..+ ...|+|+-+
T Consensus 152 G~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~-~l~~lk~~-F~~vk--vk~paSR~~S~E~YlVa 223 (269)
T 2px2_A 152 PSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIE-KLESLQRR-FGGGL--VRVPLSRNSNHEMYWVS 223 (269)
T ss_dssp SCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHH-HHHHHHHH-HCCEE--ECCTTSCTTCCCEEEET
T ss_pred CccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHH-HHHHHHHH-cCCEE--EECCCCCCCCccEEEEe
Confidence 111 111 112 3433448999999 22 23332 22222222 55555 2222222 678999865
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.019 Score=52.27 Aligned_cols=83 Identities=8% Similarity=-0.083 Sum_probs=52.4
Q ss_pred ceEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHH----HHcCC-----CcEEeccCCC---------------C
Q 017839 223 RLGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAA----ALRGL-----VPLHVPLQQR---------------L 277 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a----~~Rg~-----v~~~~g~ae~---------------L 277 (365)
+.||+|||| .-+..|++. +..|++++.| ....+.+ .+.|. +.++.+++.. +
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d--~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELPGKHVTSVESD--RAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp SEEEEESCS--HHHHHHHTSTTCEEEEEESC--HHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CEEEEECch--HHHHHHHHcCCCEEEEEeCC--HHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 346999985 556777765 5788876555 4444433 33353 6677777432 3
Q ss_pred C--------C-CCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 278 P--------L-FDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 278 P--------F-~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
| . .++.||+|+.-.-.. ...+..+.+.|||||
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~~l~~l~~GG 148 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALATAFSITRPV 148 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHHHHHHCSSCE
T ss_pred HHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHHHHHhcCCCe
Confidence 3 2 247899999754211 134556779999999
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.014 Score=55.16 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=36.8
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR 264 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R 264 (365)
++..++.... .+|. +|||++||+|+++..+++.|..+++++++ ..+.+.+.+|
T Consensus 224 l~~~~i~~~~-~~~~--~vlD~f~GsGt~~~~a~~~g~~~~g~e~~--~~~~~~a~~r 276 (297)
T 2zig_A 224 LAERLVRMFS-FVGD--VVLDPFAGTGTTLIAAARWGRRALGVELV--PRYAQLAKER 276 (297)
T ss_dssp HHHHHHHHHC-CTTC--EEEETTCTTTHHHHHHHHTTCEEEEEESC--HHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCC--EEEECCCCCCHHHHHHHHcCCeEEEEeCC--HHHHHHHHHH
Confidence 4555555432 1243 57999999999999999999888886554 5666655443
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.053 Score=52.74 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=50.7
Q ss_pred eEEEEcCcccHHHHHHhhc-CCe-EEEeccCCC---hhH-HHHHHHcCCCcEEec-cCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLY-NIT-ILTTTMNLG---APY-SEAAALRGLVPLHVP-LQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~-Vv~~~ldl~---~~~-~e~a~~Rg~v~~~~g-~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
++||+||++|.|+.+.+.+ |+. |.++++-.. .|+ .+.... .++.+..+ +...++- ..+|+|+|--+ +-
T Consensus 97 ~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w-~lV~~~~~~Dv~~l~~--~~~D~ivcDig-eS- 171 (321)
T 3lkz_A 97 KVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGW-NIVTMKSGVDVFYRPS--ECCDTLLCDIG-ES- 171 (321)
T ss_dssp EEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTG-GGEEEECSCCTTSSCC--CCCSEEEECCC-CC-
T ss_pred EEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCC-cceEEEeccCHhhCCC--CCCCEEEEECc-cC-
Confidence 5699999999999988765 654 555443211 011 000111 13566666 6677764 56999998665 21
Q ss_pred cChhhH--HH---HHHHHHhhhCCC-C
Q 017839 297 IPVIMM--EF---LFYDVDRVLRGG-G 317 (365)
Q Consensus 297 ~d~~~l--e~---aL~Ei~RVLRPG-G 317 (365)
.+.... +. +|.=+-+.|++| |
T Consensus 172 s~~~~ve~~Rtl~vLel~~~wL~~~~~ 198 (321)
T 3lkz_A 172 SSSAEVEEHRTIRVLEMVEDWLHRGPR 198 (321)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCChhhhhhHHHHHHHHHHHHhccCCC
Confidence 111111 11 344446778999 6
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.062 Score=51.71 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=59.0
Q ss_pred ceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHH-----------cCCCcEEeccCCC-CCCCCCccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAAL-----------RGLVPLHVPLQQR-LPLFDGVLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~-----------Rg~v~~~~g~ae~-LPF~D~SFDlV~ 288 (365)
+.||=||.|.|..++.+.+. ++ .|..+++| +...+.+.+ ...+.++.+|+.+ +--.+++||+|+
T Consensus 85 k~VLIiGgGdG~~~revlk~~~v~~v~~VEID--~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi 162 (294)
T 3o4f_A 85 KHVLIIGGGDGAMLREVTRHKNVESITMVEID--AGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CEEEEESCTTSHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred CeEEEECCCchHHHHHHHHcCCcceEEEEcCC--HHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence 45699999999999999886 33 44444554 555544332 1236678887644 445678999999
Q ss_pred EcchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
.-.. ..+.+... -..++..+.|+|+|||
T Consensus 163 ~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~G 192 (294)
T 3o4f_A 163 SDCT-DPIGPGESLFTSAFYEGCKRCLNPGG 192 (294)
T ss_dssp ESCC-CCCCTTCCSSCCHHHHHHHHTEEEEE
T ss_pred EeCC-CcCCCchhhcCHHHHHHHHHHhCCCC
Confidence 6431 11111110 0247899999999999
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.029 Score=61.09 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=54.7
Q ss_pred eEEEEcCcccHHHHHHhhcC-----CeEEEeccCCChhHHHHH--HH--------cCC--CcEEeccCCCC-CCCCCccc
Q 017839 224 LGIDVGGATGSFAARMKLYN-----ITILTTTMNLGAPYSEAA--AL--------RGL--VPLHVPLQQRL-PLFDGVLD 285 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-----v~Vv~~~ldl~~~~~e~a--~~--------Rg~--v~~~~g~ae~L-PF~D~SFD 285 (365)
.+||.|||+|.|+..++++. ..+.|.++| ..+.+.+ .. .|. ..+..++...+ ++..+.||
T Consensus 324 rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEID--p~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 324 VISDPAAGSGNLLATVSAGFNNVMPRQIWANDIE--TLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp EEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSC--GGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred EEEECCCCccHHHHHHHHHhcccCCCeEEEEECC--HHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 45999999999999988752 356776655 4444444 11 122 12333333332 34567899
Q ss_pred eeEEcchhh-cccChh-------------------------hHHHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVN-RWIPVI-------------------------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~-~w~d~~-------------------------~le~aL~Ei~RVLRPGG 317 (365)
+|+++=-+. .+.... ....++..+.+.|||||
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGG 459 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGT 459 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTC
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCc
Confidence 999965331 111110 12235777899999999
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.07 Score=52.10 Aligned_cols=125 Identities=13% Similarity=0.077 Sum_probs=68.7
Q ss_pred CceEEEEcC------cccHHH-HHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 222 IRLGIDVGG------ATGSFA-ARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 222 iRi~LDIGC------GtG~fa-a~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.| |||+|+ -.|++. +.+...|..+++.++.. +.. ...-+++||...+. ..+.||+|+|-.+=.
T Consensus 111 mr-VLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~---~~s-----da~~~IqGD~~~~~-~~~k~DLVISDMAPN 180 (344)
T 3r24_A 111 MR-VIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLND---FVS-----DADSTLIGDCATVH-TANKWDLIISDMYDP 180 (344)
T ss_dssp CE-EEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSC---CBC-----SSSEEEESCGGGEE-ESSCEEEEEECCCCT
T ss_pred CE-EEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcc---ccc-----CCCeEEEccccccc-cCCCCCEEEecCCCC
Confidence 34 499995 667743 23433456788766642 110 01134778865533 357899999854320
Q ss_pred --cccCh------hhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCC-CCCCceEEEEe
Q 017839 295 --RWIPV------IMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPN-SKNGEVYLTAL 358 (365)
Q Consensus 295 --~w~d~------~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d-~~~~~~y~sal 358 (365)
...+. ...|.++.=+.++|+||| .++. .+.+..+.+ .|++++-. ++.- .+..|+||-++
T Consensus 181 tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg-~~~L~~lrk--~F~~VK~f--K~ASRa~SsEvYLVG~ 255 (344)
T 3r24_A 181 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-NADLYKLMG--HFSWWTAF--VTNVNASSSEAFLIGA 255 (344)
T ss_dssp TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-CHHHHHHHT--TEEEEEEE--EEGGGTTSSCEEEEEE
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC-HHHHHHHHh--hCCeEEEE--CCCCCCCCeeEEEEee
Confidence 00111 123444444577999999 4444 333444443 56665544 2222 36889999886
Q ss_pred eec
Q 017839 359 LQK 361 (365)
Q Consensus 359 l~K 361 (365)
=-|
T Consensus 256 gfK 258 (344)
T 3r24_A 256 NYL 258 (344)
T ss_dssp EEC
T ss_pred ecc
Confidence 544
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=93.99 E-value=0.089 Score=50.54 Aligned_cols=80 Identities=11% Similarity=-0.073 Sum_probs=51.5
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH--cCCCcEEeccCCCCC-----C
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL--RGLVPLHVPLQQRLP-----L 279 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~--Rg~v~~~~g~ae~LP-----F 279 (365)
+++++++.....++. ++||.+||.|..+..+++++..|++.+.| ..+.+.+.+ .+.+.++.++...++ .
T Consensus 10 Ll~e~le~L~~~~gg--~~VD~T~G~GGHS~~il~~~g~VigiD~D--p~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~ 85 (285)
T 1wg8_A 10 LYQEALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIGLDQD--PEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 85 (285)
T ss_dssp THHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhhCCCCCC--EEEEeCCCCcHHHHHHHHCCCEEEEEeCC--HHHHHHHHhhccCCEEEEECCcchHHHHHHHc
Confidence 456666543221243 56999999999999999987788875554 555554443 124567777655543 2
Q ss_pred CCCccceeEEc
Q 017839 280 FDGVLDVVRCG 290 (365)
Q Consensus 280 ~D~SFDlV~s~ 290 (365)
..+.||.|...
T Consensus 86 g~~~vDgIL~D 96 (285)
T 1wg8_A 86 GVERVDGILAD 96 (285)
T ss_dssp TCSCEEEEEEE
T ss_pred CCCCcCEEEeC
Confidence 23579999863
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.77 Score=43.51 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=41.0
Q ss_pred eEEEEcCcccHHHHHHhhc-CCe-EEEeccCCChhHH---HHHHHc--CCCcEEec-cCCCCCCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY-NIT-ILTTTMNLGAPYS---EAAALR--GLVPLHVP-LQQRLPLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~-Vv~~~ldl~~~~~---e~a~~R--g~v~~~~g-~ae~LPF~D~SFDlV~s~~~ 292 (365)
++||+||++|.|+.+.+.+ |+. |.+. |++..-- .....- .++.|..+ |...++= ..+|.|.|--+
T Consensus 81 ~VvDLGaapGGWSq~~a~~~g~~~V~av--dvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~DtllcDIg 153 (267)
T 3p8z_A 81 RVIDLGCGRGGWSYYCAGLKKVTEVRGY--TKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKCDTLLCDIG 153 (267)
T ss_dssp EEEEESCTTSHHHHHHHTSTTEEEEEEE--CCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCCSEEEECCC
T ss_pred EEEEcCCCCCcHHHHHHHhcCCCEEEEE--ecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccccEEEEecC
Confidence 5699999999999988765 554 5554 4322100 011112 24677877 7666653 56999998654
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.47 Score=45.80 Aligned_cols=131 Identities=11% Similarity=0.094 Sum_probs=75.5
Q ss_pred EEEEcCcccHHHHHHhhcCC--e-EEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCC---CCCccceeEEcchhhccc
Q 017839 225 GIDVGGATGSFAARMKLYNI--T-ILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPL---FDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv--~-Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF---~D~SFDlV~s~~~L~~w~ 297 (365)
+||+-||.|.++..+.+.|+ . |.+ .|.+....+..... +...++.+|+..+.- +...+|+|+.+.-=..+.
T Consensus 5 v~dLFaG~Gg~~~g~~~~G~~~~~v~~--~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 5 VLELYSGVGGMHHALRESCIPAQVVAA--IDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEETCTTCHHHHHHHHHTCSEEEEEE--ECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred EEEeCcCccHHHHHHHHCCCCceEEEE--EeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 59999999999999988883 3 444 44445555544433 234567788776642 122699999765211111
Q ss_pred --------ChhhHHHHHHHHHhhh---C--CCC---------CcchhhhhHHHHHHhhCCceeeEEeecCCC---C-CCC
Q 017839 298 --------PVIMMEFLFYDVDRVL---R--GGG---------KASDLENVYGPLIGKLGYKKVKWATANKPN---S-KNG 351 (365)
Q Consensus 298 --------d~~~le~aL~Ei~RVL---R--PGG---------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~~ 351 (365)
++ ....++.|+.|++ | |.= ......+.+...++.+||. +.|.+..-.| + .+.
T Consensus 83 ~ag~~~g~~d-~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~~GvPQ~R~ 160 (343)
T 1g55_A 83 RIGRQGDMTD-SRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQ-YQEFLLSPTSLGIPNSRL 160 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEE-EEEEEECGGGGTCSCCCC
T ss_pred hcCCcCCccC-ccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCe-eEEEEEEHHHCCCCCccc
Confidence 11 0112455555554 4 544 1111223456678899996 6777665555 2 577
Q ss_pred ceEEEEee
Q 017839 352 EVYLTALL 359 (365)
Q Consensus 352 ~~y~sall 359 (365)
.+|+-|..
T Consensus 161 R~~iv~~~ 168 (343)
T 1g55_A 161 RYFLIAKL 168 (343)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 78888865
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=92.61 E-value=0.74 Score=44.31 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=74.6
Q ss_pred CceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCC-CCccceeEEcchhhcc---
Q 017839 222 IRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLF-DGVLDVVRCGHAVNRW--- 296 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~-D~SFDlV~s~~~L~~w--- 296 (365)
++ +||+.||.|.++..+.+.|..++. ..|.+....+..... +... .+|..++.-. -..+|+|+.+.--..+
T Consensus 12 ~~-~~dLFaG~Gg~~~g~~~aG~~~v~-~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~a 87 (327)
T 2c7p_A 12 LR-FIDLFAGLGGFRLALESCGAECVY-SNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSIS 87 (327)
T ss_dssp CE-EEEETCTTTHHHHHHHHTTCEEEE-EECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCTT
T ss_pred Cc-EEEECCCcCHHHHHHHHCCCeEEE-EEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcchh
Confidence 44 599999999999999888977653 345445444443332 1111 4555444211 1248999976421111
Q ss_pred ------cChhhHHHHHHHHH---hhhCCCC----------Cc--chhhhhHHHHHHhhCCceeeEEeecCCC---C-CCC
Q 017839 297 ------IPVIMMEFLFYDVD---RVLRGGG----------KA--SDLENVYGPLIGKLGYKKVKWATANKPN---S-KNG 351 (365)
Q Consensus 297 ------~d~~~le~aL~Ei~---RVLRPGG----------~~--~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~~ 351 (365)
.|.. ..++.|+. +.+||.- .. ...-+.+...++.+||. +.|.+..-.| + .+.
T Consensus 88 g~~~g~~d~r--~~L~~~~~r~i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~~GvPQ~R~ 164 (327)
T 2c7p_A 88 GKQKGFEDSR--GTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYS-FHAKVLNALDYGIPQKRE 164 (327)
T ss_dssp SCCCGGGSTT--SCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBC-CEEEEEEGGGGTCSBCCE
T ss_pred cccCCCcchh--hHHHHHHHHHHHhccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCE-EEEEEEEHHHcCCCccce
Confidence 1211 12344444 4467765 10 11122356678899996 6777666555 2 577
Q ss_pred ceEEEEeee
Q 017839 352 EVYLTALLQ 360 (365)
Q Consensus 352 ~~y~sall~ 360 (365)
.+|+-|+..
T Consensus 165 R~~iv~~~~ 173 (327)
T 2c7p_A 165 RIYMICFRN 173 (327)
T ss_dssp EEEEEEEBG
T ss_pred EEEEEEEeC
Confidence 788888754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.99 E-value=0.23 Score=45.72 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=36.3
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR 264 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R 264 (365)
++..++.... .+|. +|||..||+|+.+....+.|..+++++++ ....+.+.+|
T Consensus 201 l~~~~i~~~~-~~~~--~vlD~f~GsGtt~~~a~~~gr~~ig~e~~--~~~~~~~~~r 253 (260)
T 1g60_A 201 LIERIIRASS-NPND--LVLDCFMGSGTTAIVAKKLGRNFIGCDMN--AEYVNQANFV 253 (260)
T ss_dssp HHHHHHHHHC-CTTC--EEEESSCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCC--EEEECCCCCCHHHHHHHHcCCeEEEEeCC--HHHHHHHHHH
Confidence 4555555432 1243 57999999999999998889888886654 4555555443
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=91.89 E-value=0.92 Score=44.55 Aligned_cols=132 Identities=10% Similarity=-0.016 Sum_probs=77.7
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCC--------CCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPL--------FDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF--------~D~SFDlV~s~~~L~~ 295 (365)
+||+-||.|.++.-+.+.|..++. ++|.+....+..... ....++.+|+..+.. ....+|+|+.+--=..
T Consensus 5 vidLFsG~GGlslG~~~aG~~~v~-avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ~ 83 (376)
T 3g7u_A 5 VIDLFSGVGGLSLGAARAGFDVKM-AVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQG 83 (376)
T ss_dssp EEEETCTTSHHHHHHHHHTCEEEE-EECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCCT
T ss_pred EEEEccCcCHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCCC
Confidence 499999999999999888977653 344445554443332 234566777766532 3467999996542111
Q ss_pred cc-------ChhhHHHHHHHHH---hhhCCCC---------Cc---chhhhhHHHHHHhhCCceeeEEeecCCC---C-C
Q 017839 296 WI-------PVIMMEFLFYDVD---RVLRGGG---------KA---SDLENVYGPLIGKLGYKKVKWATANKPN---S-K 349 (365)
Q Consensus 296 w~-------d~~~le~aL~Ei~---RVLRPGG---------~~---~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~ 349 (365)
+. ++ ....++.|+. +.+||.= .. ....+.+. .++++||..+.|.+.+-.| + .
T Consensus 84 fS~ag~~~~~d-~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v~~~~vl~a~dyGvPQ~ 161 (376)
T 3g7u_A 84 FSSIGKGNPDD-SRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDYGAPTI 161 (376)
T ss_dssp TC-------CH-HHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEECCCEEEEGGGGTCSBC
T ss_pred cccccCCCCCC-chHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCccCcEEEEEHhhCCCCCC
Confidence 11 11 1123444444 4456765 10 11122344 7889999865777766655 2 4
Q ss_pred CCceEEEEee
Q 017839 350 NGEVYLTALL 359 (365)
Q Consensus 350 ~~~~y~sall 359 (365)
+..+|+-|+.
T Consensus 162 R~R~~iig~r 171 (376)
T 3g7u_A 162 RTRYFFIGVK 171 (376)
T ss_dssp CEEEEEEEEE
T ss_pred CcEEEEEEEe
Confidence 6678877763
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.74 Score=44.44 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=78.2
Q ss_pred CCceEEEEcCcccHHHHHHhhcCC--eEE--EeccCCChhHHHHHHHc-CCCcEEeccCCCCCC---CCCccceeEEcch
Q 017839 221 VIRLGIDVGGATGSFAARMKLYNI--TIL--TTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPL---FDGVLDVVRCGHA 292 (365)
Q Consensus 221 ~iRi~LDIGCGtG~faa~Lae~gv--~Vv--~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF---~D~SFDlV~s~~~ 292 (365)
.++ ++|+-||.|.+..-+.+.|+ .++ +.++ +....+..... +.. ++.+|...+.. ++..+|+++.+.-
T Consensus 10 ~~~-vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~--d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpP 85 (327)
T 3qv2_A 10 QVN-VIEFFSGIGGLRSSYERSSININATFIPFDI--NEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPP 85 (327)
T ss_dssp CEE-EEEETCTTTHHHHHHHHSSCCCCEEEEEECC--CHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCC
T ss_pred CCE-EEEECCChhHHHHHHHHcCCCceEEEEEEEC--CHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCC
Confidence 455 49999999999999988884 444 4444 44444433322 222 45567666542 2236899996542
Q ss_pred hhcc----------cChhhHHHHHHHHHh-hhC-----CCC---------CcchhhhhHHHHHHhhCCceeeEEeecCCC
Q 017839 293 VNRW----------IPVIMMEFLFYDVDR-VLR-----GGG---------KASDLENVYGPLIGKLGYKKVKWATANKPN 347 (365)
Q Consensus 293 L~~w----------~d~~~le~aL~Ei~R-VLR-----PGG---------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d 347 (365)
=..+ .++ .....+.|+.| +++ |.= ......+.+...++.+||. +.|.+..-.|
T Consensus 86 CQ~fs~S~ag~~~~~~d-~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~ 163 (327)
T 3qv2_A 86 CQPYNNSIMSKHKDIND-PRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQYY-IKDIICSPID 163 (327)
T ss_dssp CTTCSHHHHTTTCTTTC-GGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTTCE-EEEEEECGGG
T ss_pred ccCcccccCCCCCCCcc-ccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCCCE-EEEEEEeHHH
Confidence 1122 111 12257788888 664 544 1111223466788999997 6777666555
Q ss_pred ---C-CCCceEEEEee
Q 017839 348 ---S-KNGEVYLTALL 359 (365)
Q Consensus 348 ---~-~~~~~y~sall 359 (365)
+ .+..+|+-|..
T Consensus 164 yGvPQ~R~R~fivg~r 179 (327)
T 3qv2_A 164 IGIPNSRTRYYVMARL 179 (327)
T ss_dssp GTCSBCCCEEEEEEES
T ss_pred cCCCccceEEEEEEEe
Confidence 2 46778887764
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.56 Score=44.61 Aligned_cols=47 Identities=17% Similarity=0.037 Sum_probs=32.3
Q ss_pred CCcEEeccC-CCCC-CCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 266 LVPLHVPLQ-QRLP-LFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 266 ~v~~~~g~a-e~LP-F~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+.++.|++ +-|| ++++.||+|+.-.-.. +.....|..+.+.|+|||
T Consensus 190 ~I~li~Gda~etL~~~~~~~~d~vfIDaD~y-----~~~~~~Le~~~p~L~pGG 238 (282)
T 2wk1_A 190 QVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY-----ESTWDTLTNLYPKVSVGG 238 (282)
T ss_dssp TEEEEESCHHHHSTTCCCCCEEEEEECCCSH-----HHHHHHHHHHGGGEEEEE
T ss_pred ceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc-----ccHHHHHHHHHhhcCCCE
Confidence 367888875 3355 4468999999754221 112357888999999999
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=89.44 E-value=3.6 Score=38.45 Aligned_cols=130 Identities=12% Similarity=0.029 Sum_probs=76.0
Q ss_pred EEEEcCcccHHHHHHhhcCCeEE-EeccCCChhHHHHHHHcCCCcEEeccCCCCCCC-CCccceeEEcc-h--h------
Q 017839 225 GIDVGGATGSFAARMKLYNITIL-TTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLF-DGVLDVVRCGH-A--V------ 293 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv-~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~-D~SFDlV~s~~-~--L------ 293 (365)
+||+=||.|.+..-|.+.|..++ +.++| ....+.....---.++.+|...+... -..+|+++.+. | +
T Consensus 3 vidLFsG~GG~~~G~~~aG~~~v~a~e~d--~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~ 80 (331)
T 3ubt_Y 3 LISLFSGAGGLDLGFQKAGFRIICANEYD--KSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSL 80 (331)
T ss_dssp EEEESCTTCHHHHHHHHTTCEEEEEEECC--TTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEE
T ss_pred EEEeCcCccHHHHHHHHCCCEEEEEEeCC--HHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCc
Confidence 49999999999988888898765 33444 44444333321224566776655321 12589998654 1 1
Q ss_pred hcccChhhHHHHHHHHHhh---hCCCC-----C-------cchhhhhHHHHHHhhCCceeeEEeecCCC---C-CCCceE
Q 017839 294 NRWIPVIMMEFLFYDVDRV---LRGGG-----K-------ASDLENVYGPLIGKLGYKKVKWATANKPN---S-KNGEVY 354 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RV---LRPGG-----~-------~~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~~~~y 354 (365)
....|.. ..++.|+.|+ +||.- + ..+.-+.+...++.+||. +.|.+..-.| + .+..+|
T Consensus 81 ~g~~d~R--~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~-v~~~vlna~~yGvPQ~R~Rvf 157 (331)
T 3ubt_Y 81 RGIDDPR--GKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD-VHIILLNANDYGVAQDRKRVF 157 (331)
T ss_dssp CCTTCGG--GHHHHHHHHHHHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEE-EEEEEEEGGGTTCSBCCEEEE
T ss_pred cCCCCch--hHHHHHHHHHHhccCCeEEEeeeecccccccccchhhhhhhhhccCCcE-EEEEecccccCCCCcccceEE
Confidence 1112221 2355555555 67876 1 111223356778999997 6777666555 2 567788
Q ss_pred EEEee
Q 017839 355 LTALL 359 (365)
Q Consensus 355 ~sall 359 (365)
+-|+.
T Consensus 158 ivg~r 162 (331)
T 3ubt_Y 158 YIGFR 162 (331)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 87764
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=0.37 Score=48.00 Aligned_cols=92 Identities=10% Similarity=0.044 Sum_probs=53.9
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc--------------CCCcEEeccCCC----CCCCCCc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR--------------GLVPLHVPLQQR----LPLFDGV 283 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R--------------g~v~~~~g~ae~----LPF~D~S 283 (365)
+.||=||.|.|..++.+.+... .|..+++ ++...+.+.+- ..+.++.+|+-+ .+=.++.
T Consensus 207 krVLIIGgGdG~~~revlkh~~~~V~~VEI--Dp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 207 KDVLILGGGDGGILCEIVKLKPKMVTMVEI--DQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp CEEEEEECTTCHHHHHHHTTCCSEEEEEES--CHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CeEEEECCCcHHHHHHHHhcCCceeEEEcc--CHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 4569999999999999988653 3433344 45666655431 013345555421 1113467
Q ss_pred cceeEEcchhhccc--C----hh--hHHHHHHHHHhhhCCCC
Q 017839 284 LDVVRCGHAVNRWI--P----VI--MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 284 FDlV~s~~~L~~w~--d----~~--~le~aL~Ei~RVLRPGG 317 (365)
||+|+.-. ..... + .. --+.++..+.|+|+|||
T Consensus 285 yDvIIvDl-~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~G 325 (381)
T 3c6k_A 285 FDYVINDL-TAVPISTSPEEDSTWEFLRLILDLSMKVLKQDG 325 (381)
T ss_dssp EEEEEEEC-CSSCCCCC----CHHHHHHHHHHHHHHTEEEEE
T ss_pred eeEEEECC-CCCcccCcccCcchHHHHHHHHHHHHHhcCCCC
Confidence 99999642 11110 0 00 01346788999999999
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=88.06 E-value=0.37 Score=45.17 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=43.5
Q ss_pred CcEEeccCCC-CC-CCCCccceeEEcchhhc---ccC--------------hhhHHHHHHHHHhhhCCCC-----Ccc-h
Q 017839 267 VPLHVPLQQR-LP-LFDGVLDVVRCGHAVNR---WIP--------------VIMMEFLFYDVDRVLRGGG-----KAS-D 321 (365)
Q Consensus 267 v~~~~g~ae~-LP-F~D~SFDlV~s~~~L~~---w~d--------------~~~le~aL~Ei~RVLRPGG-----~~~-~ 321 (365)
+.++.||+.. |+ +++++||+|++.=-... ... ...++..+.|+.|+||||| ... +
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~ 101 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVA 101 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEE
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 4567776544 33 46889999998742210 000 0123457889999999999 111 0
Q ss_pred -------------hhhhHHHHHHhhCCceee
Q 017839 322 -------------LENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 322 -------------l~~~~~~~l~~~gfk~i~ 339 (365)
+......+++..||+...
T Consensus 102 ~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 102 VARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred cccccCCcccccccHHHHHHHHHHcCCeeec
Confidence 112355678889986644
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=86.65 E-value=1.3 Score=43.49 Aligned_cols=51 Identities=6% Similarity=-0.184 Sum_probs=35.3
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH---cCCCcEEeccCC
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL---RGLVPLHVPLQQ 275 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~---Rg~v~~~~g~ae 275 (365)
..|||||.|.|.++..|.++ +..++.+.+| ..+.....+ .+.+.++.+|+-
T Consensus 60 ~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D--~~l~~~L~~~~~~~~l~ii~~D~l 115 (353)
T 1i4w_A 60 LKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKR--SSLYKFLNAKFEGSPLQILKRDPY 115 (353)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCCSEEEEECCC--HHHHHHHHHHTTTSSCEEECSCTT
T ss_pred CEEEEECCCCCHHHHHHHhhCCCCEEEEEecC--HHHHHHHHHhccCCCEEEEECCcc
Confidence 45699999999999999986 4567765555 445444433 245667777763
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=85.66 E-value=0.99 Score=46.28 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=40.1
Q ss_pred eEEEEcCcccHHHHHHhhc---------------CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCC--
Q 017839 224 LGIDVGGATGSFAARMKLY---------------NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLF-- 280 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---------------gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~-- 280 (365)
.|+|-+||||.|.....++ ...+.|.++| ..+...+. -+|. ..+..+++-..|+.
T Consensus 220 ~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~--~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~ 297 (530)
T 3ufb_A 220 SVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAK--SLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREM 297 (530)
T ss_dssp CEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCS--HHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGC
T ss_pred EEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhcc--HHHHHHHHHHHHhcCCccccccccccccCchhhh
Confidence 3599999999997655432 1346665554 22322222 2343 34566665554543
Q ss_pred --CCccceeEEcchh
Q 017839 281 --DGVLDVVRCGHAV 293 (365)
Q Consensus 281 --D~SFDlV~s~~~L 293 (365)
...||+|+++=-+
T Consensus 298 ~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 298 GDKDRVDVILTNPPF 312 (530)
T ss_dssp CGGGCBSEEEECCCS
T ss_pred cccccceEEEecCCC
Confidence 3579999997543
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=83.71 E-value=6.8 Score=37.71 Aligned_cols=133 Identities=11% Similarity=0.004 Sum_probs=77.5
Q ss_pred EEEEcCcccHHHHHHhhcCC--eEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCC---CCCccceeEEcchhhcc--
Q 017839 225 GIDVGGATGSFAARMKLYNI--TILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPL---FDGVLDVVRCGHAVNRW-- 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv--~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF---~D~SFDlV~s~~~L~~w-- 296 (365)
++|+-||.|.+..-+.+.|+ .++. +.|.+....+..... +...++.+|...+.. +...+|+++.+.-=..+
T Consensus 6 ~idLFaG~GG~~~G~~~aG~~~~~v~-a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS~ 84 (333)
T 4h0n_A 6 ILELYSGIGGMHCAWKESGLDGEIVA-AVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFTR 84 (333)
T ss_dssp EEEETCTTTHHHHHHHHHTCSEEEEE-EECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSEE
T ss_pred EEEECcCccHHHHHHHHcCCCceEEE-EEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchhh
Confidence 49999999999988887785 4432 344444444433332 334566777666542 23368999965411111
Q ss_pred ------cChhhHHHHHHHHHhhh---C-CCC---------CcchhhhhHHHHHHhhCCceeeEEeecCCC---C-CCCce
Q 017839 297 ------IPVIMMEFLFYDVDRVL---R-GGG---------KASDLENVYGPLIGKLGYKKVKWATANKPN---S-KNGEV 353 (365)
Q Consensus 297 ------~d~~~le~aL~Ei~RVL---R-PGG---------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~~~~ 353 (365)
.+++ ...++.|+.|++ | |.= ......+.+...++++||. +.|.+.+-.| + .+..+
T Consensus 85 ag~~~~~~d~-r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~~GvPQ~R~R~ 162 (333)
T 4h0n_A 85 NGKYLDDNDP-RTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFI-YQEFLLCPSTVGVPNSRLRY 162 (333)
T ss_dssp TTEECCTTCT-TSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTEE-EEEEEECTTTTTCSCCCCEE
T ss_pred hhhccCCcCc-ccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCCe-EEEEEecHHHcCCCccceEE
Confidence 1111 113566666665 4 654 1111233567788999997 5677666555 2 56778
Q ss_pred EEEEeee
Q 017839 354 YLTALLQ 360 (365)
Q Consensus 354 y~sall~ 360 (365)
|+-|...
T Consensus 163 fiva~r~ 169 (333)
T 4h0n_A 163 YCTARRN 169 (333)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 8877654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=82.63 E-value=5.5 Score=38.40 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=47.6
Q ss_pred cEEeccCC-CCC-CCCCccceeEEcchh------hcccChhhHHHHHHHHHhhhCCCC---CcchhhhhHHHHHHhhCCc
Q 017839 268 PLHVPLQQ-RLP-LFDGVLDVVRCGHAV------NRWIPVIMMEFLFYDVDRVLRGGG---KASDLENVYGPLIGKLGYK 336 (365)
Q Consensus 268 ~~~~g~ae-~LP-F~D~SFDlV~s~~~L------~~w~d~~~le~aL~Ei~RVLRPGG---~~~~l~~~~~~~l~~~gfk 336 (365)
.++.|++. .|| +.+..||+|+-- .+ +-|. +..+..|+|.++||| +.... -.....+..+||+
T Consensus 169 ~l~~GDa~~~l~~l~~~~~Da~flD-gFsP~kNPeLWs-----~e~f~~l~~~~~pgg~laTYtaa-g~VRR~L~~aGF~ 241 (308)
T 3vyw_A 169 KVLLGDARKRIKEVENFKADAVFHD-AFSPYKNPELWT-----LDFLSLIKERIDEKGYWVSYSSS-LSVRKSLLTLGFK 241 (308)
T ss_dssp EEEESCHHHHGGGCCSCCEEEEEEC-CSCTTTSGGGGS-----HHHHHHHHTTEEEEEEEEESCCC-HHHHHHHHHTTCE
T ss_pred EEEechHHHHHhhhcccceeEEEeC-CCCcccCcccCC-----HHHHHHHHHHhCCCcEEEEEeCc-HHHHHHHHHCCCE
Confidence 35667653 355 345689999852 22 2243 258999999999999 21111 1245589999998
Q ss_pred eeeEE-eecCCCCCCCceEEEEeeecC
Q 017839 337 KVKWA-TANKPNSKNGEVYLTALLQKP 362 (365)
Q Consensus 337 ~i~w~-v~~K~d~~~~~~y~sall~KP 362 (365)
.-+-. .+ .|.|+ +.|.+..|
T Consensus 242 V~k~~G~g-----~KRem-l~A~~~~~ 262 (308)
T 3vyw_A 242 VGSSREIG-----RKRKG-TVASLKAP 262 (308)
T ss_dssp EEEEECC--------CEE-EEEESSSC
T ss_pred EEecCCCC-----CCCce-eEEecCCC
Confidence 54322 22 23454 34766544
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=82.33 E-value=1.1 Score=42.80 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=42.2
Q ss_pred cEEeccCCC-CC-CCCCccceeEEcchh--h---cccC------hhhHHHHHHHHHhhhCCCC-----Ccch--------
Q 017839 268 PLHVPLQQR-LP-LFDGVLDVVRCGHAV--N---RWIP------VIMMEFLFYDVDRVLRGGG-----KASD-------- 321 (365)
Q Consensus 268 ~~~~g~ae~-LP-F~D~SFDlV~s~~~L--~---~w~d------~~~le~aL~Ei~RVLRPGG-----~~~~-------- 321 (365)
.++.||+.. |. +++++||+|++.=-. . .|.. ...+...+.|+.||||||| ....
T Consensus 16 ~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~~ 95 (323)
T 1boo_A 16 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPAR 95 (323)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEEE
T ss_pred eEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCccc
Confidence 355665432 33 458899999987321 0 1110 0135678999999999999 1111
Q ss_pred ---hhhhHHHHHHhhCCceee
Q 017839 322 ---LENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 322 ---l~~~~~~~l~~~gfk~i~ 339 (365)
..+....+++..||..+.
T Consensus 96 ~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 96 SIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp CCHHHHHHHHHHHTTCCEEEE
T ss_pred ccchHHHHHHHHHhCCCEEEE
Confidence 112344567899986543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 365 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.78 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.74 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.73 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.68 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.67 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.66 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.64 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.59 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.58 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.55 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.55 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.53 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.5 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.49 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.47 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.45 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.45 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.45 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.42 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.39 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.38 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.37 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.37 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.36 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.32 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.23 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.22 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.22 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.22 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.21 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.21 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.2 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.18 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.16 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.16 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.13 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.13 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.11 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.06 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.04 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.03 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.98 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.95 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.9 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.88 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.84 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.83 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.75 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.74 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.7 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.67 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.45 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.36 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.33 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.26 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.25 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.1 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.1 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 97.97 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.95 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.95 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.9 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.88 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.88 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 97.81 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.72 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.6 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.6 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.45 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.39 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.34 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.21 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.97 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 96.71 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 96.61 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 96.55 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.55 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 96.43 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.31 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 96.3 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 96.29 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.7 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.64 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.63 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.52 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 95.22 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 95.14 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 94.75 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 94.71 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 94.6 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 94.29 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 93.73 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 93.62 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 92.82 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 92.26 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 89.79 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 89.08 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.51 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 87.77 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 87.56 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 87.45 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 87.1 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 86.82 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 83.91 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 82.88 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 82.38 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 81.6 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.78 E-value=3.9e-19 Score=157.94 Aligned_cols=102 Identities=19% Similarity=0.306 Sum_probs=78.6
Q ss_pred HHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC--CcEEeccCCCCCCCCC
Q 017839 209 TQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQRLPLFDG 282 (365)
Q Consensus 209 ~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~LPF~D~ 282 (365)
.++++..+..++ -|+ ||||||+|.++..|+++|.+|+++ |++..|.+.+++ .+. +.+++++++++||+++
T Consensus 5 ~~ll~~~~l~~~-~rV-LDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 5 AKLMQIAALKGN-EEV-LDVATGGGHVANAFAPFVKKVVAF--DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHHHHHTCCSC-CEE-EEETCTTCHHHHHHGGGSSEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHhcCCCCc-CEE-EEecccCcHHHHHHHHhCCEEEEE--ECCHHHHhhhhhccccccccccccccccccccccccc
Confidence 445544332113 354 999999999999999999888765 455777666543 232 5689999999999999
Q ss_pred ccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 283 VLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+||+|+|..+++|+.+ ++.+|+|++|+|||||
T Consensus 81 ~fD~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG 112 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFPN---PASFVSEAYRVLKKGG 112 (231)
T ss_dssp CEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEE
T ss_pred ccccccccccccccCC---HHHHHHHHHHhcCCCc
Confidence 9999999999987654 4579999999999999
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=2.3e-18 Score=154.81 Aligned_cols=97 Identities=22% Similarity=0.359 Sum_probs=78.7
Q ss_pred HhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cC--CCcEEeccCCCCCCCCCcc
Q 017839 211 FLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RG--LVPLHVPLQQRLPLFDGVL 284 (365)
Q Consensus 211 vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg--~v~~~~g~ae~LPF~D~SF 284 (365)
..+++| |. || ||||||||.++..|++++..|++ +|++..|.+.+.+ .+ .+.+++++++++||+|++|
T Consensus 11 ~~~~~~---~~-rI-LDiGcGtG~~~~~la~~~~~v~g--vD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 11 TAECRA---EH-RV-LDIGAGAGHTALAFSPYVQECIG--VDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHTCCT---TC-EE-EEESCTTSHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HhCCCC---CC-EE-EEeCCcCcHHHHHHHHhCCeEEE--EeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 345555 54 55 99999999999999999888876 4556777665543 33 3678999999999999999
Q ss_pred ceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+|+|..+++|+.+ ++.+++|++|+|||||
T Consensus 84 D~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG 113 (234)
T d1xxla_ 84 DIITCRYAAHHFSD---VRKAVREVARVLKQDG 113 (234)
T ss_dssp EEEEEESCGGGCSC---HHHHHHHHHHHEEEEE
T ss_pred ceeeeeceeecccC---HHHHHHHHHHeeCCCc
Confidence 99999999977654 4579999999999999
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.73 E-value=6.6e-18 Score=156.30 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=88.7
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..|+++ |..|+++ |++..+.+.+.++ | .+.++.++++++||++++||+|+|..+++|
T Consensus 70 ~vLDiGcG~G~~~~~la~~~~~~v~gv--D~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h 147 (282)
T d2o57a1 70 KGLDLGAGYGGAARFLVRKFGVSIDCL--NIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLH 147 (282)
T ss_dssp EEEEETCTTSHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGG
T ss_pred EEEEeCCCCcHHHhhhhccCCcEEEEE--eccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhh
Confidence 3599999999999999886 7888765 4556676655442 3 367899999999999999999999999998
Q ss_pred ccChhhHHHHHHHHHhhhCCCC-------------Ccchh--------------hhhHHHHHHhhCCceeeEE
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG-------------KASDL--------------ENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG-------------~~~~l--------------~~~~~~~l~~~gfk~i~w~ 341 (365)
+.+. +.+++|++|+||||| ..... .+.|..++++.||+.+.+.
T Consensus 148 ~~d~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 148 SPDK---LKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp CSCH---HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccCH---HHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence 8653 479999999999999 00100 1246788999999887665
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=8e-18 Score=147.92 Aligned_cols=107 Identities=24% Similarity=0.325 Sum_probs=85.7
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHHH
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMMEF 304 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~ 304 (365)
|||||||||.++..+++ +++ +|++..+.+.+.+++ +.++.++++.+|+++++||+|+|.++|+|+.+ ++.
T Consensus 40 vLDiGcG~G~~~~~~~~----~~g--iD~s~~~~~~a~~~~-~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d---~~~ 109 (208)
T d1vlma_ 40 GVEIGVGTGRFAVPLKI----KIG--VEPSERMAEIARKRG-VFVLKGTAENLPLKDESFDFALMVTTICFVDD---PER 109 (208)
T ss_dssp EEEETCTTSTTHHHHTC----CEE--EESCHHHHHHHHHTT-CEEEECBTTBCCSCTTCEEEEEEESCGGGSSC---HHH
T ss_pred EEEECCCCcccccccce----EEE--EeCChhhcccccccc-cccccccccccccccccccccccccccccccc---ccc
Confidence 49999999999988864 244 456678888887775 57899999999999999999999999988764 457
Q ss_pred HHHHHHhhhCCCC-------Ccc------------------h----hhhhHHHHHHhhCCceeeEE
Q 017839 305 LFYDVDRVLRGGG-------KAS------------------D----LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 305 aL~Ei~RVLRPGG-------~~~------------------~----l~~~~~~~l~~~gfk~i~w~ 341 (365)
++.|++|+||||| ... . ..+.+..++++.||+.++..
T Consensus 110 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 110 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred chhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 9999999999999 000 0 02346789999999988655
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=3.1e-17 Score=145.63 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=76.4
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEc-chhhcccChhhHH
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCG-HAVNRWIPVIMME 303 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~-~~L~~w~d~~~le 303 (365)
|||||||||.++..|++.|..|+++ |++..|.+.+.+++...++.++++.|||++++||+|+|. .+++|+.+ .+
T Consensus 46 vLDiGcG~G~~~~~l~~~~~~v~gi--D~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d---~~ 120 (246)
T d2avna1 46 VLDLGGGTGKWSLFLQERGFEVVLV--DPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN---KD 120 (246)
T ss_dssp EEEETCTTCHHHHHHHTTTCEEEEE--ESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC---HH
T ss_pred EEEECCCCchhcccccccceEEEEe--ecccccccccccccccccccccccccccccccccceeeecchhhhhhh---HH
Confidence 5999999999999999999888875 556789999988887778889999999999999999986 56766544 34
Q ss_pred HHHHHHHhhhCCCC
Q 017839 304 FLFYDVDRVLRGGG 317 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG 317 (365)
.+|+|+.|+|||||
T Consensus 121 ~~l~~i~r~Lk~gG 134 (246)
T d2avna1 121 KAFSEIRRVLVPDG 134 (246)
T ss_dssp HHHHHHHHHEEEEE
T ss_pred HHHHHHHhhcCcCc
Confidence 79999999999999
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=9.9e-17 Score=145.20 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=91.0
Q ss_pred HHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCC
Q 017839 209 TQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLF 280 (365)
Q Consensus 209 ~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~ 280 (365)
.+.+.+.| |. | |||||||+|.++..|+++ |.+|+++ |++..|.+.+.+ .|+ +.+..++++.+ ++
T Consensus 26 ~~~~~l~p---g~-~-VLDiGCG~G~~~~~la~~~~~~v~Gv--D~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~ 97 (245)
T d1nkva_ 26 GRVLRMKP---GT-R-ILDLGSGSGEMLCTWARDHGITGTGI--DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VA 97 (245)
T ss_dssp HHHTCCCT---TC-E-EEEETCTTCHHHHHHHHHTCCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CC
T ss_pred HHHcCCCC---CC-E-EEEEcCCCCHHHHHHHHhcCCEEEEE--ecccchhhHHHHHHHHhhccccchhhhhHHhhc-cc
Confidence 34444444 53 5 499999999999999875 7888875 555677665544 343 67899999998 57
Q ss_pred CCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC----------C---cch--------------hhhhHHHHHHhh
Q 017839 281 DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG----------K---ASD--------------LENVYGPLIGKL 333 (365)
Q Consensus 281 D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG----------~---~~~--------------l~~~~~~~l~~~ 333 (365)
+++||+|+|..+++|+.+. +.++.|++|+||||| . .++ ....+..++++.
T Consensus 98 ~~~fD~v~~~~~~~~~~d~---~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 174 (245)
T d1nkva_ 98 NEKCDVAACVGATWIAGGF---AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDL 174 (245)
T ss_dssp SSCEEEEEEESCGGGTSSS---HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTT
T ss_pred cCceeEEEEEehhhccCCH---HHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHc
Confidence 9999999999999888653 479999999999999 0 000 012367889999
Q ss_pred CCceeeEEe
Q 017839 334 GYKKVKWAT 342 (365)
Q Consensus 334 gfk~i~w~v 342 (365)
||..+....
T Consensus 175 G~~~v~~~~ 183 (245)
T d1nkva_ 175 GYDVVEMVL 183 (245)
T ss_dssp TBCCCEEEE
T ss_pred CCEEEEEEe
Confidence 998775443
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=7.3e-17 Score=141.42 Aligned_cols=91 Identities=19% Similarity=0.298 Sum_probs=76.1
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
|| ||||||+|.++..|++.|..|+++ |+++.|.+.++++ + .+.++.++++.+||++++||+|+|..+++|+.
T Consensus 40 ~I-LDiGcG~G~~~~~la~~~~~v~gi--D~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~ 116 (226)
T d1ve3a1 40 KV-LDLACGVGGFSFLLEDYGFEVVGV--DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116 (226)
T ss_dssp EE-EEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred EE-EEECCCcchhhhhHhhhhcccccc--cccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence 55 999999999999999999888875 4557787666543 3 25677789999999999999999999997764
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
..++..+|+|+.|+|||||
T Consensus 117 -~~d~~~~l~~i~~~LkpgG 135 (226)
T d1ve3a1 117 -PLELNQVFKEVRRVLKPSG 135 (226)
T ss_dssp -HHHHHHHHHHHHHHEEEEE
T ss_pred -hhHHHHHHHHHHHHcCcCc
Confidence 3456789999999999999
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.6e-16 Score=139.68 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=96.4
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHcC------CCcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALRG------LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~Rg------~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
.|||||||+|.++..+++++ ..|++ +|+++.|.+.|.++. .+.++.++++.+++++++||+|++..+++|+
T Consensus 63 ~vLDiGcG~G~~~~~l~~~~~~~v~~--vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~ 140 (222)
T d2ex4a1 63 CALDCGAGIGRITKRLLLPLFREVDM--VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL 140 (222)
T ss_dssp EEEEETCTTTHHHHHTTTTTCSEEEE--EESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred EEEEeccCCCHhhHHHHHhcCCEEEE--eecCHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 45999999999999987654 46766 456688888776542 2468889999999999999999999999887
Q ss_pred cChhhHHHHHHHHHhhhCCCC---------Ccc--------h---hhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEE
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG---------KAS--------D---LENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLT 356 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG---------~~~--------~---l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~s 356 (365)
.+ +....+++++.|+||||| ... . -.+.+.+++++.||+.++...-+...++--.+|.-
T Consensus 141 ~~-~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~fP~~~~~v~~~ 219 (222)
T d2ex4a1 141 TD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSF 219 (222)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTTSCEEEEE
T ss_pred hh-hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCCCcchhEEEEE
Confidence 64 345679999999999999 000 0 12347889999999988765433322222335544
Q ss_pred Ee
Q 017839 357 AL 358 (365)
Q Consensus 357 al 358 (365)
||
T Consensus 220 al 221 (222)
T d2ex4a1 220 AL 221 (222)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.59 E-value=2e-15 Score=135.31 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=78.8
Q ss_pred chHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC--CCcEEeccCCCCCCCCCc
Q 017839 206 LPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG--LVPLHVPLQQRLPLFDGV 283 (365)
Q Consensus 206 f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg--~v~~~~g~ae~LPF~D~S 283 (365)
|.+..++...+ +. + |||||||+|.++..|+++|..|++++ ++..+.+.+.++. .+.++.++.+.+++ +++
T Consensus 10 ~~~~~~~~~~~---~~-~-VLDiGcG~G~~~~~l~~~g~~v~giD--~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~ 81 (225)
T d2p7ia1 10 FMVRAFTPFFR---PG-N-LLELGSFKGDFTSRLQEHFNDITCVE--ASEEAISHAQGRLKDGITYIHSRFEDAQL-PRR 81 (225)
T ss_dssp HHHHHHGGGCC---SS-C-EEEESCTTSHHHHHHTTTCSCEEEEE--SCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSC
T ss_pred HHHHHhhhhCC---CC-c-EEEEeCCCcHHHHHHHHcCCeEEEEe--CcHHHhhhhhccccccccccccccccccc-ccc
Confidence 44555555433 32 4 49999999999999999998888754 5577887776653 36788888888886 689
Q ss_pred cceeEEcchhhcccChhhHHHHHHHHH-hhhCCCC
Q 017839 284 LDVVRCGHAVNRWIPVIMMEFLFYDVD-RVLRGGG 317 (365)
Q Consensus 284 FDlV~s~~~L~~w~d~~~le~aL~Ei~-RVLRPGG 317 (365)
||+|+|..+|+|..++ ..+|.|+. |+|||||
T Consensus 82 fD~I~~~~vleh~~d~---~~~l~~i~~~~Lk~gG 113 (225)
T d2p7ia1 82 YDNIVLTHVLEHIDDP---VALLKRINDDWLAEGG 113 (225)
T ss_dssp EEEEEEESCGGGCSSH---HHHHHHHHHTTEEEEE
T ss_pred cccccccceeEecCCH---HHHHHHHHHHhcCCCc
Confidence 9999999999887653 46899997 8999999
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.58 E-value=3e-15 Score=137.90 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=90.2
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+||+|||+|.++..|+++ +..|.+ +|.+..|.+.+.++ ..+.++.++++.+++++++||+|+|..+++|+.+
T Consensus 96 ~vLD~GcG~G~~t~~ll~~~~~~v~~--vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d 173 (254)
T d1xtpa_ 96 RALDCGAGIGRITKNLLTKLYATTDL--LEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTD 173 (254)
T ss_dssp EEEEETCTTTHHHHHTHHHHCSEEEE--EESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCH
T ss_pred eEEEecccCChhhHHHHhhcCceEEE--EcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccccch
Confidence 4599999999999988765 445655 45567888777654 2357888999999999999999999999988765
Q ss_pred hhhHHHHHHHHHhhhCCCC---------C-cch-----------hhhhHHHHHHhhCCceeeEEe
Q 017839 299 VIMMEFLFYDVDRVLRGGG---------K-ASD-----------LENVYGPLIGKLGYKKVKWAT 342 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG---------~-~~~-----------l~~~~~~~l~~~gfk~i~w~v 342 (365)
+ ++..+|+++.|+||||| . ... -.+.|..++++.||+.++...
T Consensus 174 ~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 174 A-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp H-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred h-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 4 45678999999999999 0 000 123578899999999887554
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=4.8e-15 Score=132.67 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=74.0
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcc-hhhcc
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGH-AVNRW 296 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~-~L~~w 296 (365)
+.|||||||||.++..|+++|..|+++ |+++.|.+.+.++ + .+.++.++++++|++ +.||+|+|.. +++|
T Consensus 43 ~~iLDiGcGtG~~~~~l~~~~~~v~gv--D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~- 118 (251)
T d1wzna1 43 RRVLDLACGTGIPTLELAERGYEVVGL--DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY- 118 (251)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG-
T ss_pred CEEEEeCCCCCccchhhcccceEEEEE--eeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhhc-
Confidence 346999999999999999999888875 5557787766543 3 378999999999987 5899999975 5554
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+.++...+|++++|+|||||
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG 139 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGG 139 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEE
T ss_pred CChHHHHHHHHHHHHHcCCCc
Confidence 444567789999999999999
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.55 E-value=2.2e-14 Score=127.93 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=68.3
Q ss_pred EEEEcCcccHHHHHHhhc----CCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKLY----NITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~----gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
|||||||||..+..|++. +..|++ +|++..|.+.|.++ + ...+....+.-++++.+.||+|+|+.++++
T Consensus 43 vLDlGCGtG~~~~~l~~~~~~~~~~v~g--iD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~~ 120 (225)
T d1im8a_ 43 VYDLGCSRGAATLSARRNINQPNVKIIG--IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQF 120 (225)
T ss_dssp EEEESCTTCHHHHHHHHTCCCSSCEEEE--ECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGGG
T ss_pred EEEeccchhhHHHHHHHhhcCCCCceEE--eCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeeccc
Confidence 599999999999999863 678876 56678898887653 2 233333334445666778999999999966
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. .++...+|++++|+|||||
T Consensus 121 ~~-~~d~~~~l~~i~~~LkpgG 141 (225)
T d1im8a_ 121 LP-PEDRIALLTKIYEGLNPNG 141 (225)
T ss_dssp SC-GGGHHHHHHHHHHHEEEEE
T ss_pred cC-hhhHHHHHHHHHHhCCCCc
Confidence 54 4456789999999999999
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.53 E-value=2.4e-14 Score=133.12 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=70.9
Q ss_pred CceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----CC-CcEEeccCCCCCCCCCccceeEEcchh
Q 017839 222 IRLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----GL-VPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g~-v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.|| ||||||+|.++..+++. +..|+++ |++..+.+.+.++ +. +.+..++++++||+ ++||+|+|..++
T Consensus 29 ~~I-LDiGcG~G~~~~~la~~~~~~~~v~gi--D~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l 104 (281)
T d2gh1a1 29 VHI-VDYGCGYGYLGLVLMPLLPEGSKYTGI--DSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL 104 (281)
T ss_dssp CEE-EEETCTTTHHHHHHTTTSCTTCEEEEE--ECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred CEE-EEecCcCCHHHHHHHHhCCCCCEEEEE--ecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehhh
Confidence 454 99999999999999874 5677764 5556777665443 32 56788899999986 479999999999
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+|+.+ ++.+|++++|+|||||
T Consensus 105 ~~~~d---~~~~l~~~~~~LkpgG 125 (281)
T d2gh1a1 105 LHMTT---PETMLQKMIHSVKKGG 125 (281)
T ss_dssp GGCSS---HHHHHHHHHHTEEEEE
T ss_pred hcCCC---HHHHHHHHHHHcCcCc
Confidence 88765 3479999999999999
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=6.8e-15 Score=136.18 Aligned_cols=82 Identities=26% Similarity=0.322 Sum_probs=68.8
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcC-CCcEEeccCCCCCCCCCccceeEEcchhhcccChh
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRG-LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVI 300 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~ 300 (365)
.|||||||+|.++..|++. ++++++ +|++..+.+.++++. .+.+.+++++++||+|++||+|++.+++++
T Consensus 87 ~iLDiGcG~G~~~~~l~~~~~~~~~~g--iD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~----- 159 (268)
T d1p91a_ 87 AVLDIGCGEGYYTHAFADALPEITTFG--LDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK----- 159 (268)
T ss_dssp EEEEETCTTSTTHHHHHHTCTTSEEEE--EESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC-----
T ss_pred EEEEeCCCCcHHHHHHHHHCCCCEEEE--ecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH-----
Confidence 4599999999999999987 467776 455678888777654 478899999999999999999999877643
Q ss_pred hHHHHHHHHHhhhCCCC
Q 017839 301 MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 301 ~le~aL~Ei~RVLRPGG 317 (365)
+.|+.|||||||
T Consensus 160 -----~~e~~rvLkpgG 171 (268)
T d1p91a_ 160 -----AEELARVVKPGG 171 (268)
T ss_dssp -----HHHHHHHEEEEE
T ss_pred -----HHHHHHHhCCCc
Confidence 468999999999
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.49 E-value=2.4e-14 Score=128.94 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=75.8
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEc-chhhccc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCG-HAVNRWI 297 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~-~~L~~w~ 297 (365)
.|||||||||.++..|+++|..|+| +|+++.|.+.|.++ | .+.++.+++..+++ +++||+|+|. .++.|+.
T Consensus 40 ~vLDiGCG~G~~~~~l~~~g~~v~G--vD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~ 116 (246)
T d1y8ca_ 40 DYLDLACGTGNLTENLCPKFKNTWA--VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNYII 116 (246)
T ss_dssp EEEEETCTTSTTHHHHGGGSSEEEE--ECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGGCC
T ss_pred eEEEEeCcCCHHHHHHHHhCCccEe--eccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeeeccC
Confidence 4599999999999999999998886 56678887776543 3 36789999999986 5699999986 5677776
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
..++++.+|++++|.|||||
T Consensus 117 ~~~~~~~~l~~~~~~LkpgG 136 (246)
T d1y8ca_ 117 DSDDLKKYFKAVSNHLKEGG 136 (246)
T ss_dssp SHHHHHHHHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCe
Confidence 66778889999999999999
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=1.5e-13 Score=129.92 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=70.1
Q ss_pred CCCceEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHH----HHcCCCcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 220 SVIRLGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAA----ALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a----~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
|. | |||||||.|.++.+++++ |+.|+|++++ ..+.+.+ .+.|+...+.-.....++.+++||.|+|..+++
T Consensus 62 G~-~-VLDiGCG~G~~~~~~a~~~g~~v~git~s--~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~e 137 (291)
T d1kpia_ 62 GM-T-LLDIGCGWGSTMRHAVAEYDVNVIGLTLS--ENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFE 137 (291)
T ss_dssp TC-E-EEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGG
T ss_pred CC-E-EEEecCcchHHHHHHHHhcCcceeeccch--HHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHH
Confidence 53 5 499999999999999864 8888876554 5554443 344553322223344578899999999999999
Q ss_pred cccCh------hhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPV------IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~------~~le~aL~Ei~RVLRPGG 317 (365)
|+.+. +..+.++++++|+|||||
T Consensus 138 H~~~~~~~~~~~~~~~~f~~i~~~LkpgG 166 (291)
T d1kpia_ 138 HFADGAGDAGFERYDTFFKKFYNLTPDDG 166 (291)
T ss_dssp GTTCCSSCCSTTHHHHHHHHHHHTSCTTC
T ss_pred hcchhhhhhHHHHHHHHHHHHHHhCCCCC
Confidence 98753 345689999999999999
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.45 E-value=5.8e-14 Score=123.04 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=72.1
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
|||||||+|.++..|+++|..|+++ |+++.+.+.+. +.|. +.+..++...+++ +++||+|+|..+++|+.+
T Consensus 34 vLDiGcG~G~~~~~la~~g~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~ 110 (198)
T d2i6ga1 34 TLDLGCGNGRNSLYLAANGYDVTAW--DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEA 110 (198)
T ss_dssp EEEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCT
T ss_pred EEEECCCCCHHHHHHHHHhhhhccc--cCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecCCH
Confidence 4999999999999999999998865 45567766543 3343 4567778888886 789999999999987654
Q ss_pred hhhHHHHHHHHHhhhCCCC
Q 017839 299 VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG 317 (365)
.....++.++.|+|||||
T Consensus 111 -~~~~~~l~~~~~~L~pgG 128 (198)
T d2i6ga1 111 -QTIPGLIANMQRCTKPGG 128 (198)
T ss_dssp -THHHHHHHHHHHTEEEEE
T ss_pred -HHHHHHHHHHHHHcCCCc
Confidence 456789999999999999
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.45 E-value=2e-13 Score=124.69 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=85.5
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHH----HHcC---CCcEEeccCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQRL 277 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae~L 277 (365)
..+.+++..+. ...+.+||||||+|.++..++++ ++.+++ +|+ ..+.+.+ .+.| .+.++.++...
T Consensus 68 ~~~~~~~~~d~--~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~- 141 (253)
T d1tw3a2 68 AFDAPAAAYDW--TNVRHVLDVGGGKGGFAAAIARRAPHVSATV--LEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE- 141 (253)
T ss_dssp TTHHHHHHSCC--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-
T ss_pred HHHHHHhhcCC--ccCCEEEEeCCCCCHHHHHHHHhcceeEEEE--ccC-HHHHHHHHHHHHHhhcccchhhccccchh-
Confidence 34445543332 22355699999999999999987 466655 443 2343333 3334 36677777533
Q ss_pred CCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-------C------cch------------------hhhhH
Q 017839 278 PLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-------K------ASD------------------LENVY 326 (365)
Q Consensus 278 PF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------~------~~~------------------l~~~~ 326 (365)
+ ...+||+|+++++|+||.+. ....+|++++|+||||| . ... -.+.|
T Consensus 142 ~-~~~~~D~v~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~ 219 (253)
T d1tw3a2 142 P-LPRKADAIILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKW 219 (253)
T ss_dssp C-CSSCEEEEEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHH
T ss_pred h-cccchhheeeccccccCCch-hhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHH
Confidence 2 23579999999999999754 34578999999999999 0 000 12347
Q ss_pred HHHHHhhCCceeeEEe
Q 017839 327 GPLIGKLGYKKVKWAT 342 (365)
Q Consensus 327 ~~~l~~~gfk~i~w~v 342 (365)
..++++.||+.++...
T Consensus 220 ~~ll~~AGf~~~~v~~ 235 (253)
T d1tw3a2 220 DGLAASAGLVVEEVRQ 235 (253)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 7899999999776553
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.45 E-value=3.4e-14 Score=120.82 Aligned_cols=90 Identities=8% Similarity=-0.131 Sum_probs=72.3
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC------------------CCcEEeccCCCCCC-CCCccc
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG------------------LVPLHVPLQQRLPL-FDGVLD 285 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg------------------~v~~~~g~ae~LPF-~D~SFD 285 (365)
|||+|||+|..+..|+++|..|+++ |+++.|.+.+.++. .+.++.++...++. ...+||
T Consensus 24 vLd~GCG~G~~a~~la~~G~~V~gv--D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~D 101 (201)
T d1pjza_ 24 VLVPLCGKSQDMSWLSGQGYHVVGA--ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCA 101 (201)
T ss_dssp EEETTTCCSHHHHHHHHHCCEEEEE--EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEE
T ss_pred EEEecCcCCHHHHHHHHcCCceEee--cccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccccccee
Confidence 4999999999999999999999875 55678887776541 13567777777764 568899
Q ss_pred eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+|++..++++..+ .....+++++.|+|||||
T Consensus 102 ~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG 132 (201)
T d1pjza_ 102 AFYDRAAMIALPA-DMRERYVQHLEALMPQAC 132 (201)
T ss_dssp EEEEESCGGGSCH-HHHHHHHHHHHHHSCSEE
T ss_pred EEEEEeeeEecch-hhhHHHHHHHHHhcCCCc
Confidence 9999999976554 456689999999999999
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.3e-13 Score=123.56 Aligned_cols=137 Identities=12% Similarity=0.041 Sum_probs=89.6
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc---CCCc-------------------------------
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR---GLVP------------------------------- 268 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R---g~v~------------------------------- 268 (365)
.+||||||+|.++..++..+. .|+++ |++..+.+.+.++ ....
T Consensus 54 ~vLDlGcG~G~~~~~~~~~~~~~v~gi--D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (257)
T d2a14a1 54 TLIDIGSGPTIYQVLAACDSFQDITLS--DFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV 131 (257)
T ss_dssp EEEESSCTTCCGGGTTGGGTEEEEEEE--ESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHE
T ss_pred EEEEECCCCCHhHHHHhccccCcEEEe--cCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhh
Confidence 459999999999888877664 57764 5556776655432 1000
Q ss_pred --EE----eccCCCCCCCCCccceeEEcchhhcccC-hhhHHHHHHHHHhhhCCCC-------Ccc--------------
Q 017839 269 --LH----VPLQQRLPLFDGVLDVVRCGHAVNRWIP-VIMMEFLFYDVDRVLRGGG-------KAS-------------- 320 (365)
Q Consensus 269 --~~----~g~ae~LPF~D~SFDlV~s~~~L~~w~d-~~~le~aL~Ei~RVLRPGG-------~~~-------------- 320 (365)
.. ..+....|+++++||+|++..+++|... .++...+++++.|+||||| ...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~ 211 (257)
T d2a14a1 132 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVA 211 (257)
T ss_dssp EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCC
T ss_pred hcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccC
Confidence 00 0122345899999999999999988753 2356689999999999999 000
Q ss_pred hhhhhHHHHHHhhCCceeeEEeecCC-C---CCCCceEEEEeeecC
Q 017839 321 DLENVYGPLIGKLGYKKVKWATANKP-N---SKNGEVYLTALLQKP 362 (365)
Q Consensus 321 ~l~~~~~~~l~~~gfk~i~w~v~~K~-d---~~~~~~y~sall~KP 362 (365)
--.+.+.++++.+||..+........ + .+...+++-.--.||
T Consensus 212 ~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKkp 257 (257)
T d2a14a1 212 LEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 257 (257)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred CCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeCc
Confidence 01245788999999998877544332 2 234445443333555
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=9.6e-13 Score=123.23 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=71.2
Q ss_pred HHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCC
Q 017839 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPL 279 (365)
Q Consensus 208 I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF 279 (365)
++.+++.....+|. | |||||||+|.++.+++++ |..|+++++ +..+.+.+.+ .|+ +.+...+...
T Consensus 41 ~~~~~~~l~l~~g~-~-VLDiGCG~G~~a~~~a~~~g~~v~gi~l--s~~q~~~a~~~~~~~~l~~~~~~~~~d~~~--- 113 (280)
T d2fk8a1 41 VDLNLDKLDLKPGM-T-LLDIGCGWGTTMRRAVERFDVNVIGLTL--SKNQHARCEQVLASIDTNRSRQVLLQGWED--- 113 (280)
T ss_dssp HHHHHTTSCCCTTC-E-EEEESCTTSHHHHHHHHHHCCEEEEEES--CHHHHHHHHHHHHTSCCSSCEEEEESCGGG---
T ss_pred HHHHHHHcCCCCCC-E-EEEecCCchHHHHHHHHhCceeEEEecc--hHHHHHHHHHHHHhhccccchhhhhhhhhh---
Confidence 44444432222253 4 599999999999999876 888887655 4566555443 343 2233334333
Q ss_pred CCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 280 FDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 280 ~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.+++||.|++..+++|+.+. ..+.++++++|+|||||
T Consensus 114 ~~~~fD~i~si~~~eh~~~~-~~~~~f~~i~~~LkpgG 150 (280)
T d2fk8a1 114 FAEPVDRIVSIEAFEHFGHE-NYDDFFKRCFNIMPADG 150 (280)
T ss_dssp CCCCCSEEEEESCGGGTCGG-GHHHHHHHHHHHSCTTC
T ss_pred hccchhhhhHhhHHHHhhhh-hHHHHHHHHHhccCCCc
Confidence 35799999999999998653 46689999999999999
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.38 E-value=1.7e-13 Score=124.44 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=73.3
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCC-CCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPL-FDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF-~D~SFDlV~s~~~L~ 294 (365)
.|||||||+|..+..+++.|. .|+|+ |++..|.+.|.+| + .+.+.++++...++ .+++||+|+|..+++
T Consensus 27 ~VLDlGCG~G~~~~~~~~~~~~~v~Gi--D~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~ 104 (252)
T d1ri5a_ 27 SVLDLGCGKGGDLLKYERAGIGEYYGV--DIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH 104 (252)
T ss_dssp EEEEETCTTTTTHHHHHHHTCSEEEEE--ESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGG
T ss_pred EEEEecccCcHHHHHHHHcCCCeEEEe--cCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcceee
Confidence 359999999999999988774 67764 5567787776543 2 25678888887777 578999999999998
Q ss_pred ccc-ChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWI-PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~-d~~~le~aL~Ei~RVLRPGG 317 (365)
|.. +.+.++.++.++.|+|||||
T Consensus 105 ~~~~~~~~~~~~l~~i~~~Lk~gG 128 (252)
T d1ri5a_ 105 YAFSTSESLDIAQRNIARHLRPGG 128 (252)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ecCCCHHHHHHHHHHHhceeCCCC
Confidence 764 34566789999999999999
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.9e-13 Score=121.47 Aligned_cols=91 Identities=9% Similarity=-0.139 Sum_probs=73.3
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC-----------------------CCcEEeccCCCC-C
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG-----------------------LVPLHVPLQQRL-P 278 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg-----------------------~v~~~~g~ae~L-P 278 (365)
|+ ||+|||+|..+..|+++|..|++ +|+++.+.+.+.++. .+.+++++...+ +
T Consensus 48 rv-Ld~GCG~G~~a~~LA~~G~~V~g--vD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 124 (229)
T d2bzga1 48 RV-FFPLCGKAVEMKWFADRGHSVVG--VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR 124 (229)
T ss_dssp EE-EETTCTTCTHHHHHHHTTCEEEE--ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred EE-EEeCCCCcHHHHHHHhCCCcEEE--EeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence 54 99999999999999999999886 566677776655431 245677776666 5
Q ss_pred CCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 279 LFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 279 F~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.++.||+|+...+++++.+ +..+.++.++.|+|||||
T Consensus 125 ~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG 162 (229)
T d2bzga1 125 TNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKF 162 (229)
T ss_dssp SCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEE
T ss_pred cccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcc
Confidence 77899999999999988765 456789999999999999
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=2.3e-12 Score=121.23 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=68.6
Q ss_pred CCCceEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHH----HcCC---CcEEeccCCCCCCCCCccceeEEcc
Q 017839 220 SVIRLGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAA----LRGL---VPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 220 g~iRi~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~----~Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
|. | |||||||.|.++.++++. |+.|++++++ ..+.+.+. +.|+ +.+..++...+| ++||.|++..
T Consensus 63 G~-~-VLDiGCG~G~~a~~~a~~~g~~v~git~s--~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~ 135 (285)
T d1kpga_ 63 GM-T-LLDVGCGWGATMMRAVEKYDVNVVGLTLS--KNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG 135 (285)
T ss_dssp TC-E-EEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred CC-E-EEEecCcchHHHHHHHhcCCcceEEEecc--HHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeeh
Confidence 53 5 599999999999998875 8998886654 55554443 3343 456666766664 6899999999
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++|+... ..+.++++++|+|||||
T Consensus 136 ~~eh~~~~-~~~~~~~~~~r~LkpgG 160 (285)
T d1kpga_ 136 AFEHFGHE-RYDAFFSLAHRLLPADG 160 (285)
T ss_dssp CGGGTCTT-THHHHHHHHHHHSCTTC
T ss_pred hhhhcCch-hHHHHHHHHHhhcCCCC
Confidence 99998653 35579999999999999
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.8e-12 Score=118.77 Aligned_cols=92 Identities=11% Similarity=0.028 Sum_probs=64.7
Q ss_pred CceEEEEcCcccHHHHHHhhc------CCeEEEeccCCChhHHHHHHHc--C--C---Cc--EEeccCC------CCCCC
Q 017839 222 IRLGIDVGGATGSFAARMKLY------NITILTTTMNLGAPYSEAAALR--G--L---VP--LHVPLQQ------RLPLF 280 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~------gv~Vv~~~ldl~~~~~e~a~~R--g--~---v~--~~~g~ae------~LPF~ 280 (365)
+|+ ||||||+|.++..|++. +..+..+++|.++.|.+.+.++ + . +. +....++ ..++.
T Consensus 42 ~~V-LDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 42 IKI-LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEE-EEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CeE-EEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 454 99999999998777553 3333223567778887766554 1 1 11 2222222 35788
Q ss_pred CCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 281 DGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 281 D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+++||+|+|.++++|+.+ ++.+|++++|+|||||
T Consensus 121 ~~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG 154 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNA 154 (280)
T ss_dssp CCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEE
T ss_pred CCceeEEEEccceecCCC---HHHHHHHHHhhCCCCC
Confidence 999999999999977654 4579999999999999
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.32 E-value=4.1e-12 Score=116.68 Aligned_cols=129 Identities=25% Similarity=0.211 Sum_probs=85.2
Q ss_pred HHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHH----HHcC---CCcEEeccCCCCC
Q 017839 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQRLP 278 (365)
Q Consensus 208 I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae~LP 278 (365)
++.+++..+. ...+.+||||||+|.++..++++ +.++++. |+ ..+.+.+ .+.| .+.++.++... |
T Consensus 70 ~~~~~~~~d~--~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~--Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~ 143 (256)
T d1qzza2 70 YEAPADAYDW--SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV--EL-AGPAERARRRFADAGLADRVTVAEGDFFK-P 143 (256)
T ss_dssp THHHHHTSCC--TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEE--EC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred HHHHHhcCCC--ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEe--cC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-c
Confidence 4445543332 22455699999999999999987 4666654 43 3333333 3333 34556565432 4
Q ss_pred CCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-------C--cch-----------------------hhhhH
Q 017839 279 LFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-------K--ASD-----------------------LENVY 326 (365)
Q Consensus 279 F~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------~--~~~-----------------------l~~~~ 326 (365)
.+ ..||+|++.++||+|.+.+ ...+|++++|+||||| . .++ -.+.|
T Consensus 144 ~p-~~~D~v~~~~vLh~~~d~~-~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~ 221 (256)
T d1qzza2 144 LP-VTADVVLLSFVLLNWSDED-ALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEV 221 (256)
T ss_dssp CS-CCEEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHH
T ss_pred cc-ccchhhhccccccccCcHH-HHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHH
Confidence 43 4699999999999997643 4568999999999999 0 000 02347
Q ss_pred HHHHHhhCCceeeEEeec
Q 017839 327 GPLIGKLGYKKVKWATAN 344 (365)
Q Consensus 327 ~~~l~~~gfk~i~w~v~~ 344 (365)
..++++.||+.++-+...
T Consensus 222 ~~ll~~AGf~~~~~~~~~ 239 (256)
T d1qzza2 222 VDLAGSAGLALASERTSG 239 (256)
T ss_dssp HHHHHTTTEEEEEEEEEC
T ss_pred HHHHHHCCCceeEEEEeC
Confidence 889999999888765443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.23 E-value=6.3e-12 Score=116.51 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=76.5
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC-CcEEeccCCCCCCCCCccceeEEcchhhcccC
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL-VPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~-v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.|||+|||+|.++..+++.|..|+++++ +..+.+.+.+ .|+ +.+..++... ++++++||+|+++...+.
T Consensus 123 ~VLDiGcGsG~l~i~aa~~g~~V~gvDi--s~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~~--- 196 (254)
T d2nxca1 123 KVLDLGTGSGVLAIAAEKLGGKALGVDI--DPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL--- 196 (254)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEES--CGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH---
T ss_pred EEEEcccchhHHHHHHHhcCCEEEEEEC--ChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcccccc---
Confidence 3599999999999999999988887555 4566655442 343 4566666543 466889999999755432
Q ss_pred hhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceee
Q 017839 299 VIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVK 339 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~ 339 (365)
+...+.++.|+||||| ..++. +...+.+++.||+.++
T Consensus 197 ---l~~l~~~~~~~LkpGG~lilSgil~~~~-~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 197 ---HAALAPRYREALVPGGRALLTGILKDRA-PLVREAMAGAGFRPLE 240 (254)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEEEGGGH-HHHHHHHHHTTCEEEE
T ss_pred ---HHHHHHHHHHhcCCCcEEEEEecchhhH-HHHHHHHHHCCCEEEE
Confidence 3467889999999999 12332 3466788999998764
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.22 E-value=8.3e-12 Score=113.85 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=78.2
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc----CCCcEEeccCC-CCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQ-RLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae-~LPF~D~SFDlV~s~~~L~~w 296 (365)
.|||+|||+|+++..+++.+ ..|++ +|++..|.+.+.++ +.+..+.+++. ..++.+..||++++...++++
T Consensus 77 ~VLDlGcGsG~~~~~la~~~~~g~V~a--VDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~ 154 (230)
T d1g8sa_ 77 KILYLGASAGTTPSHVADIADKGIVYA--IEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQP 154 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTSEEEE--EESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST
T ss_pred EEEEeCEEcCHHHHHHHHhCCCCEEEE--EeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccch
Confidence 35999999999999999863 56766 45567776655443 33444555544 446788899998887777554
Q ss_pred cChhhHHHHHHHHHhhhCCCC-------------Cc--chhhhhHHHHHHhhCCceeeEE
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG-------------KA--SDLENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG-------------~~--~~l~~~~~~~l~~~gfk~i~w~ 341 (365)
. +.+.++.+++|+||||| .. +..-+...+.++..||+.+.-.
T Consensus 155 ~---~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~i 211 (230)
T d1g8sa_ 155 N---QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEV 211 (230)
T ss_dssp T---HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred H---HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3 34678999999999999 00 1111235578889999887643
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.22 E-value=6.8e-12 Score=109.44 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=78.3
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCCCCCCCccceeEEcchhhcc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w 296 (365)
++||||||+|.++..+++.+..|+++ |.++.+.+.+.+ .|+ +.++.+++..+++....||+|++.....++
T Consensus 36 ~VLDiGcGsG~~s~~lA~~~~~V~av--D~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~~~ 113 (186)
T d1l3ia_ 36 VAVDVGCGTGGVTLELAGRVRRVYAI--DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL 113 (186)
T ss_dssp EEEEESCTTSHHHHHHHTTSSEEEEE--ESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTTCH
T ss_pred EEEEEECCeEcccccccccceEEEEe--cCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccccc
Confidence 46999999999999999888788865 455666665543 343 567889999899999999999998765442
Q ss_pred cChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCc
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYK 336 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk 336 (365)
+..+.++.++||||| ...+........++..||.
T Consensus 114 ------~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 114 ------QEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFD 153 (186)
T ss_dssp ------HHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCC
T ss_pred ------hHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCC
Confidence 358899999999999 1112122355677888873
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=3e-12 Score=118.49 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=64.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CC----Cc--EEeccC----CCCCCCCCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GL----VP--LHVPLQ----QRLPLFDGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~----v~--~~~g~a----e~LPF~D~SFDlV~s 289 (365)
.|||||||||.++..|+++|..|++ +|+++.|.+.|.++ +. .. +...+. ..+|+ +++||+|+|
T Consensus 59 ~vLD~GcG~G~~~~~la~~g~~v~g--vD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~v~~ 135 (292)
T d1xvaa_ 59 RVLDVACGTGVDSIMLVEEGFSVTS--VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDAVIC 135 (292)
T ss_dssp EEEESSCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHcCCeeee--ccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCceEEEE
Confidence 4599999999999999999988886 55667887766432 21 11 122221 23443 568999997
Q ss_pred cc-hhhcccCh----hhHHHHHHHHHhhhCCCC
Q 017839 290 GH-AVNRWIPV----IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~-~L~~w~d~----~~le~aL~Ei~RVLRPGG 317 (365)
.. ++.|+.+. ++...+|++++|+|||||
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 168 (292)
T d1xvaa_ 136 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG 168 (292)
T ss_dssp CSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEE
T ss_pred ecCchhhcCCcccChHHHHHHHHHHHHHcCcCc
Confidence 64 77776532 346679999999999999
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.4e-12 Score=115.79 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=63.8
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHHHcC-----CCcEEeccCC--CCCCCCCccceeE-----Ec
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAALRG-----LVPLHVPLQQ--RLPLFDGVLDVVR-----CG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~~Rg-----~v~~~~g~ae--~LPF~D~SFDlV~-----s~ 290 (365)
.|||||||+|.++..+++++ ..+++ +|+++.+.+.+.++. .+.++.++++ ..++++++||.|+ +.
T Consensus 56 ~VLdIGcG~G~~a~~~a~~~~~~v~~--id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~ 133 (229)
T d1zx0a1 56 RVLEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS 133 (229)
T ss_dssp EEEEECCTTSHHHHHHHTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred eEEEeeccchHHHHHHHHcCCCeEEE--eCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccccc
Confidence 35999999999999999875 45655 455677877766542 1334444433 3467788888876 56
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..++|+.+ .+.+++|++|+|||||
T Consensus 134 ~~~~~~~~---~~~~~~~~~r~LkpGG 157 (229)
T d1zx0a1 134 EETWHTHQ---FNFIKNHAFRLLKPGG 157 (229)
T ss_dssp GGGTTTHH---HHHHHHTHHHHEEEEE
T ss_pred cccccccC---HHHHHHHHHHHcCCCc
Confidence 66666553 4579999999999999
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.21 E-value=1.2e-11 Score=110.96 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=69.6
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHH----HHcCC--CcEEeccCCCCC--CCCCccceeEEcch
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAA----ALRGL--VPLHVPLQQRLP--LFDGVLDVVRCGHA 292 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a----~~Rg~--v~~~~g~ae~LP--F~D~SFDlV~s~~~ 292 (365)
.++||||||+|.++..|++. +..++|+ |++.++.+.+ .+.|+ +.++.+++..|. |++++||.|++.+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGi--D~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGI--ELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEe--ecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 35799999999999999987 4777764 4455655443 34454 667888988887 89999999998876
Q ss_pred hhcccChhh------HHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVIM------MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~------le~aL~Ei~RVLRPGG 317 (365)
. .|..... -...|.++.|+|||||
T Consensus 109 ~-P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG 138 (204)
T d2fcaa1 109 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGG 138 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSC
T ss_pred c-ccchhhhcchhhhHHHHHHHHHHhCCCCc
Confidence 5 5653221 0258999999999999
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.3e-11 Score=111.60 Aligned_cols=120 Identities=14% Similarity=0.042 Sum_probs=81.0
Q ss_pred eEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHHc-----CCCc-----------------------------
Q 017839 224 LGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAALR-----GLVP----------------------------- 268 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~R-----g~v~----------------------------- 268 (365)
.+||||||+|.+....+.. +..|+++ |++..|.+.+.++ +...
T Consensus 57 ~vLDiGcG~g~~~~~~~~~~~~~v~~~--D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T d2g72a1 57 TLIDIGSGPTVYQLLSACSHFEDITMT--DFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 134 (263)
T ss_dssp EEEEETCTTCCGGGTTGGGGCSEEEEE--CSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred EEEEeccCCCHHHHHHhcccCCeEEEE--eCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhh
Confidence 4599999999887655544 4567764 5567777655431 0010
Q ss_pred --EEecc------CCCCCCCCCccceeEEcchhhcccC-hhhHHHHHHHHHhhhCCCC----------C-----------
Q 017839 269 --LHVPL------QQRLPLFDGVLDVVRCGHAVNRWIP-VIMMEFLFYDVDRVLRGGG----------K----------- 318 (365)
Q Consensus 269 --~~~g~------ae~LPF~D~SFDlV~s~~~L~~w~d-~~~le~aL~Ei~RVLRPGG----------~----------- 318 (365)
....+ ....++.+++||+|++.+++++..+ .+.+..+++++.|+||||| .
T Consensus 135 ~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~ 214 (263)
T d2g72a1 135 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 214 (263)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEEC
T ss_pred hccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccccc
Confidence 11111 2345677889999999999987653 3457789999999999999 0
Q ss_pred cchhhhhHHHHHHhhCCceeeEEeecC
Q 017839 319 ASDLENVYGPLIGKLGYKKVKWATANK 345 (365)
Q Consensus 319 ~~~l~~~~~~~l~~~gfk~i~w~v~~K 345 (365)
..--.+.+.++++..||+.+...+...
T Consensus 215 ~~~t~e~v~~~l~~aGf~v~~~~~~~~ 241 (263)
T d2g72a1 215 VPVSEEEVREALVRSGYKVRDLRTYIM 241 (263)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHCCCeEEEEEEeec
Confidence 000134577899999998877665544
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.18 E-value=1.3e-11 Score=115.29 Aligned_cols=117 Identities=18% Similarity=0.182 Sum_probs=82.4
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc------C---CCcEEeccC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR------G---LVPLHVPLQ 274 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R------g---~v~~~~g~a 274 (365)
+|-..+++.| |. | |||+|||+|.++..|++. | ..|++ +|.++.+.+.|.++ + .+.+..++.
T Consensus 87 ~Ii~~l~i~P---G~-~-VLE~G~GsG~lt~~La~~vgp~G~V~~--~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~ 159 (264)
T d1i9ga_ 87 QIVHEGDIFP---GA-R-VLEAGAGSGALTLSLLRAVGPAGQVIS--YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 159 (264)
T ss_dssp HHHHHTTCCT---TC-E-EEEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHhCCCC---CC-E-EEecCcCCcHHHHHHHHhhCCCcEEEE--ecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence 3444455555 53 4 599999999999999875 3 46776 45557776665431 1 256788898
Q ss_pred CCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 275 QRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 275 e~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
...+|++++||.|+. +..++. .++.++.|+||||| ..+|..+.+..+-+..||..+
T Consensus 160 ~~~~~~~~~fDaV~l-----dlp~P~---~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i 222 (264)
T d1i9ga_ 160 ADSELPDGSVDRAVL-----DMLAPW---EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEP 222 (264)
T ss_dssp GGCCCCTTCEEEEEE-----ESSCGG---GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCC
T ss_pred ccccccCCCcceEEE-----ecCCHH---HHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecc
Confidence 889999999999986 333322 47899999999999 556666655555556778653
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=1.8e-11 Score=115.80 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=70.3
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHH----HHHcCC---CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEA----AALRGL---VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~----a~~Rg~---v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
+|||||||+|.++..+++.|+ .|++.+.+ . +.+. +.+.+. +.++.++.+.+++++++||+|++..+.++
T Consensus 41 ~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s--~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~ 117 (328)
T d1g6q1_ 41 IVLDVGCGTGILSMFAAKHGAKHVIGVDMS--S-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp EEEEETCTTSHHHHHHHHTCCSEEEEEESS--T-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred EEEEeCCCCCHHHHHHHHhCCCEEEEEeCC--H-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence 569999999999999999885 56665544 2 3222 333443 56788899999999999999999776655
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
......++..+.+++|+|||||
T Consensus 118 ~~~e~~~~~~~~a~~r~LkpgG 139 (328)
T d1g6q1_ 118 LLYESMMDTVLYARDHYLVEGG 139 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEE
T ss_pred eccchhHHHHHHHHHhccCCCe
Confidence 5544556788999999999999
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.16 E-value=3.8e-11 Score=105.09 Aligned_cols=89 Identities=9% Similarity=0.032 Sum_probs=67.2
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC----CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.|||||||+|.++..+++.+..|+++++ +..+.+.+.+ .++ +.+..++... ++++++||+|+|...+++
T Consensus 55 ~VLDiGcG~G~~~~~la~~~~~v~~iD~--s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~ 131 (194)
T d1dusa_ 55 DILDLGCGYGVIGIALADEVKSTTMADI--NRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRA 131 (194)
T ss_dssp EEEEETCTTSHHHHHHGGGSSEEEEEES--CHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTT
T ss_pred eEEEEeecCChhHHHHHhhccccceeee--ccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcccEEe
Confidence 4699999999999999988877776554 4556555433 232 4566677655 678999999999988754
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.. +..+.++.++.|+|||||
T Consensus 132 ~~--~~~~~~l~~~~~~LkpgG 151 (194)
T d1dusa_ 132 GK--EVLHRIIEEGKELLKDNG 151 (194)
T ss_dssp CH--HHHHHHHHHHHHHEEEEE
T ss_pred cc--hhhhhHHHHHHHhcCcCc
Confidence 33 234678999999999999
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=3.3e-11 Score=113.44 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=71.1
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChh-HHHHHHHcC---CCcEEeccCCCCCCCCCccceeEEcchhhccc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAP-YSEAAALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~-~~e~a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
++|||||||+|.++..+++.|+ .|++++.+.... ..+.+...+ .+.++.++++.++++.++||+|++....+...
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~ 114 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLF 114 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBT
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeeec
Confidence 3579999999999999999884 577655442111 112233334 36788899999999999999999977665544
Q ss_pred ChhhHHHHHHHHHhhhCCCC
Q 017839 298 PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 298 d~~~le~aL~Ei~RVLRPGG 317 (365)
....++.++.+++|+|||||
T Consensus 115 ~e~~~~~~l~~~~r~Lkp~G 134 (316)
T d1oria_ 115 YESMLNTVLHARDKWLAPDG 134 (316)
T ss_dssp BTCCHHHHHHHHHHHEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCCe
Confidence 44457789999999999999
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.13 E-value=1.1e-10 Score=104.74 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=64.3
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHH----HHcCCCcEEeccCCCCCCCCCccceeEEc-chhhcc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAA----ALRGLVPLHVPLQQRLPLFDGVLDVVRCG-HAVNRW 296 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a----~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~-~~L~~w 296 (365)
.|||||||+|.++..|++. +.+|++ +|+++.|.+.+ ..++.+.++.+++...++.+..||.|.+. ..+.|+
T Consensus 59 ~VLDlGcG~G~~~~~la~~v~~g~V~g--vDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~ 136 (209)
T d1nt2a_ 59 RVLYLGAASGTTVSHLADIVDEGIIYA--VEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQK 136 (209)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTSEEEE--ECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCST
T ss_pred EEEEeCCcCCHHHHHHHHhccCCeEEE--EeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccCh
Confidence 3599999999999999875 246776 56667776544 33466778888888877777776666432 334444
Q ss_pred cChhhHHHHHHHHHhhhCCCC
Q 017839 297 IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~~le~aL~Ei~RVLRPGG 317 (365)
. ..+.++.|++|+|||||
T Consensus 137 ~---~~~~~l~~~~~~LkpgG 154 (209)
T d1nt2a_ 137 N---QIEILKANAEFFLKEKG 154 (209)
T ss_dssp T---HHHHHHHHHHHHEEEEE
T ss_pred h---hHHHHHHHHHHHhccCC
Confidence 3 24578999999999999
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4.7e-11 Score=111.71 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=70.8
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHH---HHHHcC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSE---AAALRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e---~a~~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
++|||||||+|.++..+++.|+ .|++.+.+ ..+.+ .+.+.+ .+.+..++.+.+++++++||+|+|....++
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s--~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~ 114 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQS--EILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 114 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESS--THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEEEeCH--HHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeee
Confidence 3579999999999999999985 67765544 33432 223334 366788999999999999999999776655
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
......++..+...+|+|||||
T Consensus 115 ~~~e~~~~~~~~a~~~~Lkp~G 136 (311)
T d2fyta1 115 LLFESMLDSVLYAKNKYLAKGG 136 (311)
T ss_dssp BTTTCHHHHHHHHHHHHEEEEE
T ss_pred cccccccHHHHHHHHhcCCCCc
Confidence 5544456778888999999999
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.06 E-value=2.4e-10 Score=102.30 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=68.2
Q ss_pred ceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHH----HHcCC--CcEEeccCCCCC--CCCCccceeEEcch
Q 017839 223 RLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAA----ALRGL--VPLHVPLQQRLP--LFDGVLDVVRCGHA 292 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a----~~Rg~--v~~~~g~ae~LP--F~D~SFDlV~s~~~ 292 (365)
.++||||||+|.++..+|+. +..++|+++ ...+...+ .+.++ +.++.+++..|+ |+++++|.|++.+.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~--~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDI--QKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEec--cHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 36799999999999999987 477777544 45544433 33454 567888888886 88999999998775
Q ss_pred hhcccChhh------HHHHHHHHHhhhCCCC
Q 017839 293 VNRWIPVIM------MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~~w~d~~~------le~aL~Ei~RVLRPGG 317 (365)
- .|..... -...|.++.|+|||||
T Consensus 111 d-Pw~K~~h~krRl~~~~~l~~~~~~LkpgG 140 (204)
T d1yzha1 111 D-PWPKKRHEKRRLTYKTFLDTFKRILPENG 140 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTC
T ss_pred c-cccchhhhhhhhhHHHHHHHHHHhCCCCc
Confidence 3 5653211 1358999999999999
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.04 E-value=1.2e-10 Score=107.83 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=72.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc----C---CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR----G---LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R----g---~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.|||+|||+|.++..|++. +..|+++ |.++.+.+.|.++ + .+.+..++.... +++++||.|++. ..
T Consensus 88 rVLEiG~GsG~lt~~la~~v~~~g~V~~v--D~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld-~p 163 (250)
T d1yb2a1 88 DILEVGVGSGNMSSYILYALNGKGTLTVV--ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD-IP 163 (250)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSSEEEEE--CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC-CS
T ss_pred EEEEeeeeCcHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec-CC
Confidence 3599999999999999874 3467764 5557777766542 2 356777877665 578999999863 22
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
..| .++.++.|+||||| ..+|+.+ ..+.+++.||..+
T Consensus 164 ~p~-------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~-~~~~l~~~gf~~i 207 (250)
T d1yb2a1 164 DPW-------NHVQKIASMMKPGSVATFYLPNFDQSEK-TVLSLSASGMHHL 207 (250)
T ss_dssp CGG-------GSHHHHHHTEEEEEEEEEEESSHHHHHH-HHHHSGGGTEEEE
T ss_pred chH-------HHHHHHHHhcCCCceEEEEeCCcChHHH-HHHHHHHCCCcee
Confidence 222 47899999999999 3355554 4456678898664
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.03 E-value=6.4e-11 Score=106.16 Aligned_cols=83 Identities=20% Similarity=0.094 Sum_probs=61.9
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHHc----CC--CcEEeccCCCCCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAALR----GL--VPLHVPLQQRLPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~R----g~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~ 294 (365)
.|||||||||.+++.|++. | ..|++.+ .+..+.+.+.++ +. +.+..+++...++.+++||+|++..+++
T Consensus 78 ~VLdiG~GtG~~s~~la~~~~~~g~V~~id--~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~ 155 (213)
T d1dl5a1 78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVE--YSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVD 155 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEE--SCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred eEEEecCccchhHHHHHHHhCCCCcEEEee--cchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhccHH
Confidence 3599999999999999875 3 4676644 446666555432 32 4467788888888899999999999886
Q ss_pred cccChhhHHHHHHHHHhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.. .++.|+|||||
T Consensus 156 ~~p---------~~l~~~LkpGG 169 (213)
T d1dl5a1 156 EVP---------ETWFTQLKEGG 169 (213)
T ss_dssp CCC---------HHHHHHEEEEE
T ss_pred HhH---------HHHHHhcCCCc
Confidence 542 25788999999
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.7e-10 Score=109.72 Aligned_cols=103 Identities=14% Similarity=0.066 Sum_probs=70.1
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHHHH---------------cCCCcE
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAAAL---------------RGLVPL 269 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~~---------------Rg~v~~ 269 (365)
.+.++++.....++. ++||||||+|.++..++.. + ..++|+++ +..+.+.+.+ .+.+.+
T Consensus 139 ~~~~~~~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~--s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~ 214 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEK--ADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214 (328)
T ss_dssp HHHHHHHHSCCCTTC--EEEEETCTTSHHHHHHHHHCCCSEEEEEEC--SHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHHHHcCCCCCC--EEEEcCCCCCHHHHHHHHHhCCCeEEEEeC--CHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence 345555533222243 4699999999999988765 4 46777554 4445433321 124678
Q ss_pred EeccCCCCCCCCCccc--eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 270 HVPLQQRLPLFDGVLD--VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 270 ~~g~ae~LPF~D~SFD--lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.|++..+||.++.|| +|+++ .+.|+. ++..+|.|+.|+|||||
T Consensus 215 ~~gd~~~~~~~~~~~~advi~~~-~~~f~~---~~~~~l~e~~r~LKpGg 260 (328)
T d1nw3a_ 215 ERGDFLSEEWRERIANTSVIFVN-NFAFGP---EVDHQLKERFANMKEGG 260 (328)
T ss_dssp EECCTTSHHHHHHHHHCSEEEEC-CTTTCH---HHHHHHHHHHTTCCTTC
T ss_pred EECcccccccccccCcceEEEEc-ceecch---HHHHHHHHHHHhCCCCc
Confidence 9999999999998885 55554 444543 35679999999999999
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.95 E-value=7.8e-10 Score=101.38 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=78.0
Q ss_pred CceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 222 IRLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
++.+||||||+|.++..++++. .+++. +|+ +...+.+.....+.++.++.-. |.+ ..|+|+..++||+|.++
T Consensus 82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v--~Dl-p~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~de 155 (244)
T d1fp1d2 82 ISTLVDVGGGSGRNLELIISKYPLIKGIN--FDL-PQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSDE 155 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEE--ecc-hhhhhccCCCCCeEEecCCccc-ccc--cceEEEEehhhhhCCHH
Confidence 5667999999999999999874 55543 454 2221111112346677776422 333 34999999999999865
Q ss_pred hhHHHHHHHHHhhhCCCC---------C----cch---------------------hhhhHHHHHHhhCCceeeEE
Q 017839 300 IMMEFLFYDVDRVLRGGG---------K----ASD---------------------LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG---------~----~~~---------------------l~~~~~~~l~~~gfk~i~w~ 341 (365)
+ -..+|+.++++|+||| . ... -.+.|..++++.||+.++..
T Consensus 156 ~-~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~ 230 (244)
T d1fp1d2 156 K-CIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA 230 (244)
T ss_dssp H-HHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred H-HHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEE
Confidence 4 4578999999999999 0 000 02357899999999998754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.9e-10 Score=101.32 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=62.4
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----c-------CCCcEEeccCCCCCCCCCccceeEE
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----R-------GLVPLHVPLQQRLPLFDGVLDVVRC 289 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----R-------g~v~~~~g~ae~LPF~D~SFDlV~s 289 (365)
.|||||||+|.+++.|++. ..+|+++ |....+.+.+.+ . +.+.+..+++...++.++.||.|++
T Consensus 79 ~VLdiG~GsGy~ta~la~l~~~~g~V~~i--e~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~ 156 (224)
T d1i1na_ 79 KALDVGSGSGILTACFARMVGCTGKVIGI--DHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 156 (224)
T ss_dssp EEEEETCTTSHHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHhCCCceEEEE--cCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhh
Confidence 3599999999999888875 3577765 444666554432 1 2356778898888989999999999
Q ss_pred cchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..++.+. + .++.++|||||
T Consensus 157 ~~~~~~i-p--------~~l~~~LkpGG 175 (224)
T d1i1na_ 157 GAAAPVV-P--------QALIDQLKPGG 175 (224)
T ss_dssp CSBBSSC-C--------HHHHHTEEEEE
T ss_pred hcchhhc-C--------HHHHhhcCCCc
Confidence 9988653 2 25789999999
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.88 E-value=1.8e-09 Score=100.22 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=75.3
Q ss_pred HHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCCC
Q 017839 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQRL 277 (365)
Q Consensus 208 I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~L 277 (365)
|-..+++.| |. + +||+|||+|.++..|++. +..|++ +|.++.+.+.|.+ .|. +.+..++. ..
T Consensus 95 Ii~~l~i~p---G~-~-VLDiG~GsG~lt~~lA~~~~~~G~V~~--vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~~ 166 (266)
T d1o54a_ 95 IAMMLDVKE---GD-R-IIDTGVGSGAMCAVLARAVGSSGKVFA--YEKREEFAKLAESNLTKWGLIERVTIKVRDI-SE 166 (266)
T ss_dssp HHHHTTCCT---TC-E-EEEECCTTSHHHHHHHHHTTTTCEEEE--ECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-GG
T ss_pred HHHhhCCCC---CC-E-EEECCCCCCHHHHHHHHHhCCCcEEEE--EeCCHHHHHHHHHHHHHhccccCcEEEeccc-cc
Confidence 444455555 53 4 599999999999999875 357776 4555667665543 243 33444443 23
Q ss_pred CCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCcee
Q 017839 278 PLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 278 PF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i 338 (365)
.|.+..||.|+. +..++ ..++.++.|+||||| ..+++.+ ....++..||..+
T Consensus 167 ~~~~~~~D~V~~-----d~p~p---~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~-~~~~l~~~gF~~i 225 (266)
T d1o54a_ 167 GFDEKDVDALFL-----DVPDP---WNYIDKCWEALKGGGRFATVCPTTNQVQE-TLKKLQELPFIRI 225 (266)
T ss_dssp CCSCCSEEEEEE-----CCSCG---GGTHHHHHHHEEEEEEEEEEESSHHHHHH-HHHHHHHSSEEEE
T ss_pred cccccceeeeEe-----cCCCH---HHHHHHHHhhcCCCCEEEEEeCcccHHHH-HHHHHHHCCceeE
Confidence 577888999874 33433 258999999999999 3455544 4566778898654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.84 E-value=1.9e-09 Score=98.60 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=79.4
Q ss_pred CceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccCh
Q 017839 222 IRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+.+||||||+|.++..++++ +.+++. +|+ ....+.+.....+.++.+|... |.+ .+|+++..++||+|.++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v--~Dl-p~vi~~~~~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~ 154 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIV--FDR-PQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDK 154 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEE--ecC-HHHHHhCcccCceEEEecCccc-CCC--CCcEEEEEeecccCChH
Confidence 456799999999999999987 466554 443 2222222233457788887543 323 57999999999999876
Q ss_pred hhHHHHHHHHHhhhCCCC--------------C---------------------cch-hhhhHHHHHHhhCCceeeE
Q 017839 300 IMMEFLFYDVDRVLRGGG--------------K---------------------ASD-LENVYGPLIGKLGYKKVKW 340 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG--------------~---------------------~~~-l~~~~~~~l~~~gfk~i~w 340 (365)
+ -...|+.+++.|+||| . +.+ ..+.|..++++.||+.++.
T Consensus 155 ~-~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i 230 (244)
T d1fp2a2 155 D-CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI 230 (244)
T ss_dssp H-HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred H-HHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEE
Confidence 5 4468999999999994 0 000 1235889999999998764
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=3.5e-09 Score=101.09 Aligned_cols=116 Identities=11% Similarity=0.075 Sum_probs=72.2
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHc-----------------CC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALR-----------------GL 266 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~R-----------------g~ 266 (365)
+|-..+++.| |. | |||+|||+|.++..|++. +..|++. |.++.+.+.|.++ ..
T Consensus 89 ~Il~~l~i~p---G~-r-VLE~GtGsG~lt~~LAr~vg~~G~V~t~--E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n 161 (324)
T d2b25a1 89 MILSMMDINP---GD-T-VLEAGSGSGGMSLFLSKAVGSQGRVISF--EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 161 (324)
T ss_dssp HHHHHHTCCT---TC-E-EEEECCTTSHHHHHHHHHHCTTCEEEEE--ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred HHHHHhCCCC---CC-E-EEEecccccHHHHHHHHHhCCCcEEEEe--cCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 3444555655 64 4 599999999999999875 3467764 4556666655431 13
Q ss_pred CcEEeccCCCCC--CCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHH--hhCC
Q 017839 267 VPLHVPLQQRLP--LFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIG--KLGY 335 (365)
Q Consensus 267 v~~~~g~ae~LP--F~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~--~~gf 335 (365)
+.+..++..... +.+.+||.|+. ++...| .++.++.|+||||| ..+|+.+ ....++ ++||
T Consensus 162 v~~~~~di~~~~~~~~~~~fD~V~L-D~p~P~-------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~-~~~~l~~~~~~f 232 (324)
T d2b25a1 162 VDFIHKDISGATEDIKSLTFDAVAL-DMLNPH-------VTLPVFYPHLKHGGVCAVYVVNITQVIE-LLDGIRTCELAL 232 (324)
T ss_dssp EEEEESCTTCCC-------EEEEEE-CSSSTT-------TTHHHHGGGEEEEEEEEEEESSHHHHHH-HHHHHHHHTCCE
T ss_pred eeEEecchhhcccccCCCCcceEee-cCcCHH-------HHHHHHHHhccCCCEEEEEeCCHHHHHH-HHHHHHHcCCCc
Confidence 567777766654 46789999985 222233 37889999999999 4455555 334454 3467
Q ss_pred cee
Q 017839 336 KKV 338 (365)
Q Consensus 336 k~i 338 (365)
..+
T Consensus 233 ~~i 235 (324)
T d2b25a1 233 SCE 235 (324)
T ss_dssp EEE
T ss_pred eee
Confidence 543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.75 E-value=6.3e-09 Score=94.56 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=77.5
Q ss_pred CceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHcCCCcEEeccC-CCCCCCCCccceeEEcchhhcccC
Q 017839 222 IRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQ-QRLPLFDGVLDVVRCGHAVNRWIP 298 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~a-e~LPF~D~SFDlV~s~~~L~~w~d 298 (365)
.+.+||||||+|.++..++++ +.+++..++. +..+.+.....+.+..++. +.+|. -|++...+++++|.+
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~vi~~~~~~~r~~~~~~d~~~~~P~----ad~~~l~~vlh~~~d 154 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLP---HVIEDAPSYPGVEHVGGDMFVSIPK----ADAVFMKWICHDWSD 154 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECT---TTTTTCCCCTTEEEEECCTTTCCCC----CSCEECSSSSTTSCH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccH---HhhhhcccCCceEEecccccccCCC----cceEEEEEEeecCCH
Confidence 466799999999999999987 4666654432 1222222233466777764 44553 467788999999976
Q ss_pred hhhHHHHHHHHHhhhCCCC------------C----------------------cch-hhhhHHHHHHhhCCceeeEE
Q 017839 299 VIMMEFLFYDVDRVLRGGG------------K----------------------ASD-LENVYGPLIGKLGYKKVKWA 341 (365)
Q Consensus 299 ~~~le~aL~Ei~RVLRPGG------------~----------------------~~~-l~~~~~~~l~~~gfk~i~w~ 341 (365)
.+ ...+|+++++.|+||| . +.+ -.+.|..++++.||+.++.+
T Consensus 155 ~~-~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~ 231 (243)
T d1kyza2 155 EH-CLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH 231 (243)
T ss_dssp HH-HHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEE
T ss_pred HH-HHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEE
Confidence 54 5679999999999999 0 000 02357889999999988753
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.74 E-value=4e-09 Score=95.75 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=65.0
Q ss_pred HhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCCccce
Q 017839 211 FLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDGVLDV 286 (365)
Q Consensus 211 vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~SFDl 286 (365)
.+++++ |. | |||||||+|.+++.|++.+.+|++++. +..+.+.+.++ ..+.+..+++..-...++.||.
T Consensus 65 ~L~l~~---g~-~-VLdIG~GsGy~ta~La~l~~~V~aiE~--~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 65 ELDLHK---GQ-K-VLEIGTGIGYYTALIAEIVDKVVSVEI--NEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HTTCCT---TC-E-EEEECCTTSHHHHHHHHHSSEEEEEES--CHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred Hhhhcc---cc-e-EEEecCCCCHHHHHHHHHhcccccccc--cHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 344444 54 4 599999999999999998888887554 45565555443 2356777876554446788999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|++..++.+.. .++.+.|||||
T Consensus 138 Iiv~~a~~~ip---------~~l~~qLk~GG 159 (224)
T d1vbfa_ 138 VVVWATAPTLL---------CKPYEQLKEGG 159 (224)
T ss_dssp EEESSBBSSCC---------HHHHHTEEEEE
T ss_pred HHhhcchhhhh---------HHHHHhcCCCC
Confidence 99988876543 24567899999
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=8.9e-09 Score=93.45 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=60.1
Q ss_pred eEEEEcCcccHHHHHHhhc-C--CeEEEeccCCChhHHHHHHH----cCCCcEEeccC---CCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY-N--ITILTTTMNLGAPYSEAAAL----RGLVPLHVPLQ---QRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~-g--v~Vv~~~ldl~~~~~e~a~~----Rg~v~~~~g~a---e~LPF~D~SFDlV~s~~~L 293 (365)
.|||+|||+|+++..|++. | ..|+++ |+++.+.+.+.+ ++.+..+..++ +..++....||+|++...
T Consensus 76 ~VLDlGaGsG~~t~~la~~VG~~G~V~aV--D~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~- 152 (227)
T d1g8aa_ 76 SVLYLGIASGTTASHVSDIVGWEGKIFGI--EFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA- 152 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC-
T ss_pred EEEEeccCCCHHHHHHHHHhCCCCEEEEE--eCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcc-
Confidence 4599999999999999985 3 567764 455666554432 34344445543 445666788999887432
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.. ..+.++.++.|+|||||
T Consensus 153 -~~~---~~~~~l~~~~~~LkpgG 172 (227)
T d1g8aa_ 153 -QPT---QAKILIDNAEVYLKRGG 172 (227)
T ss_dssp -STT---HHHHHHHHHHHHEEEEE
T ss_pred -ccc---hHHHHHHHHHHhcccCC
Confidence 322 34578999999999999
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=2.1e-08 Score=93.53 Aligned_cols=134 Identities=15% Similarity=0.151 Sum_probs=87.0
Q ss_pred ccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC--CcEEe
Q 017839 200 FKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL--VPLHV 271 (365)
Q Consensus 200 ~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~ 271 (365)
|+..|+.+++..+..... ...++ ||+|||+|-.+..++.. +..|+++++ +....+.+.+ .+. +.++.
T Consensus 90 PRpeTE~lv~~~l~~~~~--~~~~v-lDlGtGSG~I~i~la~~~p~~~v~avDi--s~~Al~~A~~Na~~~~~~~v~~~~ 164 (274)
T d2b3ta1 90 PRPDTECLVEQALARLPE--QPCRI-LDLGTGTGAIALALASERPDCEIIAVDR--MPDAVSLAQRNAQHLAIKNIHILQ 164 (274)
T ss_dssp CCTTHHHHHHHHHHHSCS--SCCEE-EEETCTTSHHHHHHHHHCTTSEEEEECS--SHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred cccchhhhhhhHhhhhcc--cccce-eeeehhhhHHHHHHHhhCCcceeeeccc--hhHHHhHHHHHHHHhCcccceeee
Confidence 445677777777764432 34554 99999999999999875 467776544 4555444332 232 56777
Q ss_pred ccCCCCCCCCCccceeEEcchhh------------cccCh----------hhHHHHHHHHHhhhCCCC-----Ccchhhh
Q 017839 272 PLQQRLPLFDGVLDVVRCGHAVN------------RWIPV----------IMMEFLFYDVDRVLRGGG-----KASDLEN 324 (365)
Q Consensus 272 g~ae~LPF~D~SFDlV~s~~~L~------------~w~d~----------~~le~aL~Ei~RVLRPGG-----~~~~l~~ 324 (365)
++.-. +++++.||+|+|+=-.. .+.+. ...+..+.+..+.|+||| .+....+
T Consensus 165 ~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~ 243 (274)
T d2b3ta1 165 SDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGE 243 (274)
T ss_dssp CSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHH
T ss_pred ccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHH
Confidence 76432 45678999999973110 11111 234567899999999999 3333334
Q ss_pred hHHHHHHhhCCceee
Q 017839 325 VYGPLIGKLGYKKVK 339 (365)
Q Consensus 325 ~~~~~l~~~gfk~i~ 339 (365)
....++++.||..++
T Consensus 244 ~v~~~l~~~gf~~i~ 258 (274)
T d2b3ta1 244 AVRQAFILAGYHDVE 258 (274)
T ss_dssp HHHHHHHHTTCTTCC
T ss_pred HHHHHHHHCCCCeEE
Confidence 467899999998653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=1.5e-07 Score=92.14 Aligned_cols=103 Identities=11% Similarity=0.011 Sum_probs=61.4
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHc-----------CC----CcE
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAALR-----------GL----VPL 269 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~R-----------g~----v~~ 269 (365)
.+.++++.....+|. ++||||||+|.++..++.. |. .++|+++ +..+.+.|.++ |. +.+
T Consensus 204 ~i~~Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~GIDi--S~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~ 279 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEI--MDDASDLTILQYEELKKRCKLYGMRLNNVEF 279 (406)
T ss_dssp HHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEEC--CHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence 455555533222253 4699999999999999876 54 6877554 45665544321 11 111
Q ss_pred -EeccCCCCCCCCC---ccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 270 -HVPLQQRLPLFDG---VLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 270 -~~g~ae~LPF~D~---SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
..++....++.+. .+|+|++... .++. .+..+|.|+.|+|||||
T Consensus 280 ~~~~~f~~~~~~d~~~~~adVV~inn~-~f~~---~l~~~L~ei~r~LKPGG 327 (406)
T d1u2za_ 280 SLKKSFVDNNRVAELIPQCDVILVNNF-LFDE---DLNKKVEKILQTAKVGC 327 (406)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCT-TCCH---HHHHHHHHHHTTCCTTC
T ss_pred eeeechhhccccccccccceEEEEecc-cCch---HHHHHHHHHHHhcCCCc
Confidence 1222223333333 3567776543 2332 46689999999999999
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.36 E-value=2e-07 Score=84.10 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=59.9
Q ss_pred eEEEEcCcccHHHHHHhhc----C----CeEEEeccCCChhHHHHHHHc-----------CCCcEEeccCCCCCCCCCcc
Q 017839 224 LGIDVGGATGSFAARMKLY----N----ITILTTTMNLGAPYSEAAALR-----------GLVPLHVPLQQRLPLFDGVL 284 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~----g----v~Vv~~~ldl~~~~~e~a~~R-----------g~v~~~~g~ae~LPF~D~SF 284 (365)
.|||||||||.+++.|++. | .+|++++. .+.+.+.+.++ +.+.+..+++......++.|
T Consensus 83 ~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~--~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~f 160 (223)
T d1r18a_ 83 RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEH--QAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPY 160 (223)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEES--CHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSE
T ss_pred eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEec--CHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccce
Confidence 3599999999999888764 3 36776544 45555544321 23567888888777788899
Q ss_pred ceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 285 DVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 285 DlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|.|++..++.+.. ..+.+.|||||
T Consensus 161 D~Iiv~~a~~~~p---------~~l~~~Lk~gG 184 (223)
T d1r18a_ 161 NAIHVGAAAPDTP---------TELINQLASGG 184 (223)
T ss_dssp EEEEECSCBSSCC---------HHHHHTEEEEE
T ss_pred eeEEEEeechhch---------HHHHHhcCCCc
Confidence 9999999875432 14678999999
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.33 E-value=6.2e-07 Score=78.47 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=61.3
Q ss_pred CCCceEEEEcCcccH----HHHHHhhc------CCeEEEeccCCChhHHHHHHH--------cCC---------------
Q 017839 220 SVIRLGIDVGGATGS----FAARMKLY------NITILTTTMNLGAPYSEAAAL--------RGL--------------- 266 (365)
Q Consensus 220 g~iRi~LDIGCGtG~----faa~Lae~------gv~Vv~~~ldl~~~~~e~a~~--------Rg~--------------- 266 (365)
+.+|| +++|||||. +|..+.+. .+.++++++| ....+.|.+ ++.
T Consensus 24 ~~lrI-wsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~--~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~ 100 (193)
T d1af7a2 24 GEYRV-WSAAASTGEEPYSIAITLADALGMAPGRWKVFASDID--TEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGP 100 (193)
T ss_dssp SCEEE-EESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESC--HHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTT
T ss_pred CCeEE-EEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCC--hHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCC
Confidence 56776 999999996 56555543 2467776665 455544431 000
Q ss_pred --------------CcEEecc-CCCCCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 267 --------------VPLHVPL-QQRLPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 267 --------------v~~~~g~-ae~LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.+...+ ...-+.+.+.||+|.|.++|+.+. ++..+.++..+++.|+|||
T Consensus 101 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l~~~L~pGG 165 (193)
T d1af7a2 101 HEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDG 165 (193)
T ss_dssp SCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEE
T ss_pred ccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-HHHHHHHHHHHHHHhCCCc
Confidence 0011111 122234568899999999997755 4456789999999999999
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.26 E-value=3.1e-07 Score=82.52 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=63.2
Q ss_pred HHhhhccccCCCCceEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCCCCCCCC
Q 017839 210 QFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQRLPLFDG 282 (365)
Q Consensus 210 ~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~LPF~D~ 282 (365)
+.+++++ |. + |||||||||..++.|++. |..|++.+. +..+.+.+. +.|. +.+..+++..-...++
T Consensus 72 ~~L~l~~---g~-~-VLeIGsGsGY~taila~l~g~~V~~ie~--~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 72 EIANLKP---GM-N-ILEVGTGSGWNAALISEIVKTDVYTIER--IPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHTCCT---TC-C-EEEECCTTSHHHHHHHHHHCSCEEEEES--CHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HhhccCc---cc-e-EEEecCCCChhHHHHHHhhCceeEEEec--cHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence 3344444 53 4 599999999999999876 655665444 345544443 2343 5577888776666789
Q ss_pred ccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 283 VLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 283 SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
.||.|++..++.+.+ . .+..-|||||
T Consensus 145 pfD~Iiv~~a~~~ip-~--------~l~~qL~~gG 170 (215)
T d1jg1a_ 145 PYDVIIVTAGAPKIP-E--------PLIEQLKIGG 170 (215)
T ss_dssp CEEEEEECSBBSSCC-H--------HHHHTEEEEE
T ss_pred cceeEEeecccccCC-H--------HHHHhcCCCC
Confidence 999999998886432 1 2456799999
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.25 E-value=1.5e-06 Score=79.82 Aligned_cols=104 Identities=12% Similarity=0.166 Sum_probs=70.6
Q ss_pred eEEEEcCcccHHHHHHhhcC-CeEEEeccCCChhHHHHHH----HcC---CCcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYN-ITILTTTMNLGAPYSEAAA----LRG---LVPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g-v~Vv~~~ldl~~~~~e~a~----~Rg---~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
++||+|||+|.|+..++++| ..|+++++| ..+.+.+. ..| .+.++.+|+..++ ..+.||.|++..--
T Consensus 110 ~VlD~~aG~G~~~l~~a~~~~~~V~avd~n--~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p~-- 184 (260)
T d2frna1 110 LVVDMFAGIGHLSLPIAVYGKAKVIAIEKD--PYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYVV-- 184 (260)
T ss_dssp EEEETTCTTTTTHHHHHHHTCCEEEEECCC--HHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCCS--
T ss_pred EEEECcceEcHHHHHHHHhCCcEEEEecCC--HHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECCCC--
Confidence 46999999999999999887 578765554 44544433 223 3677889988876 46889999875321
Q ss_pred ccChhhHHHHHHHHHhhhCCCC--------Cc----chhhhhHHHHHHhhCCce
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG--------KA----SDLENVYGPLIGKLGYKK 337 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG--------~~----~~l~~~~~~~l~~~gfk~ 337 (365)
. -..++.+..++||||| .. ++..+....+.+..||+.
T Consensus 185 ---~--~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v 233 (260)
T d2frna1 185 ---R--THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 233 (260)
T ss_dssp ---S--GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred ---c--hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCce
Confidence 1 1236778999999999 11 112233556777788854
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.10 E-value=2.3e-06 Score=75.90 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=47.4
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.|||+|||||.++..++.+|. .|+++++| ..+.+.+.+. ..+.+..++..+++ +.||+|+++=
T Consensus 51 ~VLDlGcGtG~l~i~a~~~ga~~V~~vDid--~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NP 115 (197)
T d1ne2a_ 51 SVIDAGTGNGILACGSYLLGAESVTAFDID--PDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNP 115 (197)
T ss_dssp EEEEETCTTCHHHHHHHHTTBSEEEEEESC--HHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECC
T ss_pred EEEEeCCCCcHHHHHHHHcCCCcccccccC--HHHHHHHHHccccccEEEEehhhcC---CcceEEEeCc
Confidence 469999999999988888884 57775554 5666655443 23678888887765 7899999973
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.10 E-value=7.1e-07 Score=84.05 Aligned_cols=92 Identities=21% Similarity=0.156 Sum_probs=61.0
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCC----CCCCCCCccceeEEcch-
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQ----RLPLFDGVLDVVRCGHA- 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae----~LPF~D~SFDlV~s~~~- 292 (365)
.|||++||||.++..++..+..|+++ |.++.+.+.+. ..|+ +.++.+++. .++...+.||+|++.--
T Consensus 148 rVLDl~~gtG~~s~~~a~g~~~V~~v--D~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~ 225 (318)
T d1wxxa2 148 RALDVFSYAGGFALHLALGFREVVAV--DSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 225 (318)
T ss_dssp EEEEETCTTTHHHHHHHHHEEEEEEE--ESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred eeeccCCCCcHHHHHHHhcCCcEEee--cchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCc
Confidence 46999999999999998666677764 44566665543 2344 456777643 35667889999997421
Q ss_pred hh----c-ccChhhHHHHHHHHHhhhCCCC
Q 017839 293 VN----R-WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 293 L~----~-w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+. . +.........+..+.++|||||
T Consensus 226 ~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG 255 (318)
T d1wxxa2 226 FAKGKKDVERAYRAYKEVNLRAIKLLKEGG 255 (318)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 00 0 0001123457888999999999
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.97 E-value=2.5e-06 Score=80.24 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=60.9
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC---CcEEeccCC----CCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQ----RLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae----~LPF~D~SFDlV~s~~ 291 (365)
.|||+|||||.++..++..|. .|++++ +++.+.+.+.+ .|+ +.++.+++. .++..+..||+|++.-
T Consensus 148 ~VLDl~~g~G~~si~~a~~ga~~V~~vD--~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~Dp 225 (324)
T d2as0a2 148 RVLDVFTYTGGFAIHAAIAGADEVIGID--KSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 225 (324)
T ss_dssp EEEETTCTTTHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred eeecccCcccchhhhhhhcCCcEEEeec--CCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCC
Confidence 459999999999999998875 677654 44566554432 343 457777643 3566788999999743
Q ss_pred hh-h-cccC----hhhHHHHHHHHHhhhCCCC
Q 017839 292 AV-N-RWIP----VIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L-~-~w~d----~~~le~aL~Ei~RVLRPGG 317 (365)
-- . +=.+ .......+....++|||||
T Consensus 226 P~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG 257 (324)
T d2as0a2 226 PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGG 257 (324)
T ss_dssp CCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 11 0 0000 0123346788899999999
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=5e-05 Score=68.83 Aligned_cols=115 Identities=15% Similarity=0.098 Sum_probs=69.5
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHH----cCC---CcEEeccCCC------CCCCCCccceeE
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQR------LPLFDGVLDVVR 288 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~------LPF~D~SFDlV~ 288 (365)
.+||||||+|-.+..|+.+ +..+++++++ ..+.+.|.+ .++ +.++..+... ....++.||+|+
T Consensus 64 ~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~--~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv 141 (250)
T d2h00a1 64 RGIDIGTGASCIYPLLGATLNGWYFLATEVD--DMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 141 (250)
T ss_dssp EEEEESCTTTTHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred eEEEeCCCchHHHHHHHHhCCCccccceecC--HHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence 4599999999999998876 6888876654 455554432 222 3344332221 123567899999
Q ss_pred EcchhhcccCh--------------------------------hhHHHHHHHHHhhhCCCC-------CcchhhhhHHHH
Q 017839 289 CGHAVNRWIPV--------------------------------IMMEFLFYDVDRVLRGGG-------KASDLENVYGPL 329 (365)
Q Consensus 289 s~~~L~~w~d~--------------------------------~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~ 329 (365)
|+==++.-.+. .-.+..+.|..+.++..| ..+.+++ ...+
T Consensus 142 sNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~-i~~~ 220 (250)
T d2h00a1 142 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAP-LKEE 220 (250)
T ss_dssp ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHH-HHHH
T ss_pred ecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHH-HHHH
Confidence 98644210000 013345667777788888 1223333 5678
Q ss_pred HHhhCCceeeEE
Q 017839 330 IGKLGYKKVKWA 341 (365)
Q Consensus 330 l~~~gfk~i~w~ 341 (365)
+++.|++.+++.
T Consensus 221 L~~~g~~~i~~i 232 (250)
T d2h00a1 221 LRIQGVPKVTYT 232 (250)
T ss_dssp HHHTTCSEEEEE
T ss_pred HHHcCCCeEEEE
Confidence 889998877655
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.95 E-value=1.1e-05 Score=70.75 Aligned_cols=65 Identities=11% Similarity=0.158 Sum_probs=45.6
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHHc----C-CCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAALR----G-LVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~R----g-~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||+|||||.++..++.+|. .|+++++| ..+.+.+.+. + ...++.+++..+ ++.||+|+++=-.
T Consensus 49 ~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~--~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 49 VVADLGAGTGVLSYGALLLGAKEVICVEVD--KEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred EEEECcCcchHHHHHHHHcCCCEEEEEcCc--HHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 469999999999998888884 67765554 5555555432 2 245666776554 5679999987543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=5.7e-06 Score=72.77 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=70.8
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhHHHHHHHc-----CCCcEEeccCCCC--
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY--NITILTTTMNLGAPYSEAAALR-----GLVPLHVPLQQRL-- 277 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~~e~a~~R-----g~v~~~~g~ae~L-- 277 (365)
+++++++.....+|. ++||++||+|..+..++++ +..+++. |.+..+.+.+.++ ..+.++.++...+
T Consensus 11 ll~evi~~l~~~~~~--~~lD~t~G~Gghs~~il~~~~~~~vi~~--D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~ 86 (192)
T d1m6ya2 11 MVREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGI--DVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF 86 (192)
T ss_dssp THHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH
T ss_pred HHHHHHHhhCCCCCC--EEEEecCCCcHHHHHHHhcCCCCeEEEe--echHHHHHHHHHhhccccccccchhHHHhhHHH
Confidence 566777654322343 5699999999999999886 4677764 5556777777654 2355676654433
Q ss_pred ---CCCCCccceeEEcchhh--ccc----ChhhHHHHHHHHHhhhCCCC
Q 017839 278 ---PLFDGVLDVVRCGHAVN--RWI----PVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 278 ---PF~D~SFDlV~s~~~L~--~w~----d~~~le~aL~Ei~RVLRPGG 317 (365)
.+..+.||.|..-..+. ++. .....+.+|.++.++|+|||
T Consensus 87 ~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG 135 (192)
T d1m6ya2 87 LLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGG 135 (192)
T ss_dssp HHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEE
T ss_pred HHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCC
Confidence 35568999987544331 111 11234578999999999999
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.88 E-value=1.3e-05 Score=74.23 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=76.2
Q ss_pred cccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc-CCeEEEeccCCChhHHHHHHH----cCC---CcEE
Q 017839 199 AFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY-NITILTTTMNLGAPYSEAAAL----RGL---VPLH 270 (365)
Q Consensus 199 ~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~-gv~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~ 270 (365)
-|+..|+.+++.+++.... ....++||+|||+|..+..+++. +..|+++++ +....+.+.+ .+. +.++
T Consensus 90 IPRpeTE~lv~~~~~~~~~--~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Di--s~~Al~~A~~Na~~~~~~~~~~i~ 165 (271)
T d1nv8a_ 90 VPRPETEELVELALELIRK--YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDV--SSKAVEIARKNAERHGVSDRFFVR 165 (271)
T ss_dssp CCCTTHHHHHHHHHHHHHH--HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEES--CHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred Cchhhhhhhhhhhhhhhcc--ccccEEEEeeeeeehhhhhhhhcccceeeechh--hhhHHHHHHHHHHHcCCCceeEEe
Confidence 3555678888877765432 22345699999999988888765 577776554 4555444432 233 3344
Q ss_pred eccC-CCCCCCCCccceeEEcch-------hh---cccC-------hhhHHHHHHHHHhhhCCCC-----CcchhhhhHH
Q 017839 271 VPLQ-QRLPLFDGVLDVVRCGHA-------VN---RWIP-------VIMMEFLFYDVDRVLRGGG-----KASDLENVYG 327 (365)
Q Consensus 271 ~g~a-e~LPF~D~SFDlV~s~~~-------L~---~w~d-------~~~le~aL~Ei~RVLRPGG-----~~~~l~~~~~ 327 (365)
.++. +.++...+.||+|+|+=- +. .|.+ .++++..-+=+.+.|+||| .+.+..+...
T Consensus 166 ~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~ 245 (271)
T d1nv8a_ 166 KGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELK 245 (271)
T ss_dssp ESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHT
T ss_pred ecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHHH
Confidence 5543 334445579999999821 10 0111 1122222122567899999 3333333345
Q ss_pred HHHHhhCC
Q 017839 328 PLIGKLGY 335 (365)
Q Consensus 328 ~~l~~~gf 335 (365)
.+++..||
T Consensus 246 ~l~~~~g~ 253 (271)
T d1nv8a_ 246 KIVSDTVF 253 (271)
T ss_dssp TTSTTCEE
T ss_pred HHHHhCCE
Confidence 56666666
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.88 E-value=5.1e-06 Score=73.93 Aligned_cols=89 Identities=27% Similarity=0.370 Sum_probs=60.7
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHH----HHcCC---CcEEeccCCC-C-----CCCCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAA----ALRGL---VPLHVPLQQR-L-----PLFDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a----~~Rg~---v~~~~g~ae~-L-----PF~D~SFDl 286 (365)
+.|||||||+|..+..|++. +..+++++++ ..+.+.+ ...|. +.++.|++.. | .+..+.||+
T Consensus 58 k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~--~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 58 SLVLELGAYCGYSAVRMARLLQPGARLLTMEMN--PDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESC--HHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CEEEEEccCchhHHHHHHHhCCCccEEEEEecc--HHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 45699999999999999874 5678775554 4444433 23353 7788887543 2 256788999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+.-. +.+.......+.+..|+|||||
T Consensus 136 ifiD~----~~~~~~~~~~l~~~~~lLkpGG 162 (214)
T d2cl5a1 136 VFLDH----WKDRYLPDTLLLEKCGLLRKGT 162 (214)
T ss_dssp EEECS----CGGGHHHHHHHHHHTTCEEEEE
T ss_pred eeecc----cccccccHHHHHHHhCccCCCc
Confidence 99753 3222222346788999999999
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.81 E-value=2.6e-06 Score=71.50 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=55.7
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC---CcEEeccCCC-CCCCCCccceeEEcchhh
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL---VPLHVPLQQR-LPLFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~---v~~~~g~ae~-LPF~D~SFDlV~s~~~L~ 294 (365)
.+||+|||||.++...+.+|+ .|+.++.| ..+.+.+.+ .+. +.++.+++.. ++...+.||+|++.=-..
T Consensus 17 ~vlDl~~GtG~~~iea~~rga~~v~~ve~~--~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy~ 94 (152)
T d2esra1 17 RVLDLFAGSGGLAIEAVSRGMSAAVLVEKN--RKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA 94 (152)
T ss_dssp EEEEETCTTCHHHHHHHHTTCCEEEEECCC--HHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred eEEEcCCccCHHHHHHHHhCcceeeeehhc--hhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhhc
Confidence 459999999999998888985 56654444 444443322 232 5667777655 566789999998842111
Q ss_pred cccChhhHHHHHHHH--HhhhCCCC
Q 017839 295 RWIPVIMMEFLFYDV--DRVLRGGG 317 (365)
Q Consensus 295 ~w~d~~~le~aL~Ei--~RVLRPGG 317 (365)
. ...+..+..+ .++|+|||
T Consensus 95 ~----~~~~~~l~~i~~~~~L~~~g 115 (152)
T d2esra1 95 K----ETIVATIEALAAKNLLSEQV 115 (152)
T ss_dssp H----HHHHHHHHHHHHTTCEEEEE
T ss_pred c----chHHHHHHHHHHCCCcCCCe
Confidence 0 1112233333 47899999
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.72 E-value=1.3e-05 Score=75.47 Aligned_cols=92 Identities=11% Similarity=-0.018 Sum_probs=58.1
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHH----HcCC----CcEEeccCC----CCCCCCCccceeEEc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAA----LRGL----VPLHVPLQQ----RLPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~----~Rg~----v~~~~g~ae----~LPF~D~SFDlV~s~ 290 (365)
.|||++||||.|+..++..|. .|++++++ +...+.+. ..|+ +.++.+++. .+.-..+.||+|++-
T Consensus 147 ~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s--~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~D 224 (317)
T d2b78a2 147 TVLNLFSYTAAFSVAAAMGGAMATTSVDLA--KRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 224 (317)
T ss_dssp EEEEETCTTTHHHHHHHHTTBSEEEEEESC--TTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceeecCCCCcHHHHHHHhCCCceEEEecCC--HHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEc
Confidence 459999999999998887775 56665554 44444433 2343 457777752 233346789999973
Q ss_pred ---chh---hcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 ---HAV---NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ---~~L---~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.- .-+.-..+....+....++|+|||
T Consensus 225 PP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG 257 (317)
T d2b78a2 225 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENG 257 (317)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEE
T ss_pred ChhhccchhHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 110 001111123457888899999999
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.00016 Score=62.58 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=74.9
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCC--------CCCCCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL--------PLFDGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L--------PF~D~SFDlV~s~~~ 292 (365)
.+||+||+.|.|...+.++ ...+++.++..-.+ ...+.++.++.... -+..+.||+|+|-.+
T Consensus 25 ~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~-------i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a 97 (180)
T d1ej0a_ 25 TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-------IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-------CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEeccCCcceEEEEeeccccceEEEeecccccc-------cCCceEeecccccchhhhhhhhhccCcceeEEEeccc
Confidence 5699999999999998875 24566654321111 01123444432210 123567999998766
Q ss_pred hhcccC--------hhhHHHHHHHHHhhhCCCC-------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCCCceEEEE
Q 017839 293 VNRWIP--------VIMMEFLFYDVDRVLRGGG-------KASDLENVYGPLIGKLGYKKVKWATANKPNSKNGEVYLTA 357 (365)
Q Consensus 293 L~~w~d--------~~~le~aL~Ei~RVLRPGG-------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~~~~y~sa 357 (365)
...-.. .+....++.=+.++||+|| .+++..+ +...+++. |++++..--+-.-++..|+|+-+
T Consensus 98 p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~-l~~~l~~~-F~~V~~~KP~aSR~~SsE~Ylv~ 175 (180)
T d1ej0a_ 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDE-YLREIRSL-FTKVKVRKPDSSRARSREVYIVA 175 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHH-HHHHHHHH-EEEEEEECCTTSCTTCCEEEEEE
T ss_pred chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHH-HHHHHHhh-cCEEEEECCCCcccCCceEEEEE
Confidence 422111 1122345556789999999 4444444 44455544 77766432222223789999988
Q ss_pred eeecC
Q 017839 358 LLQKP 362 (365)
Q Consensus 358 ll~KP 362 (365)
.=-||
T Consensus 176 ~g~Kp 180 (180)
T d1ej0a_ 176 TGRKP 180 (180)
T ss_dssp EEECC
T ss_pred ecCCC
Confidence 88787
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.60 E-value=3.5e-05 Score=72.54 Aligned_cols=92 Identities=10% Similarity=0.037 Sum_probs=61.6
Q ss_pred eEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHH----cCC----CcEEeccCCC----CCCCCCccceeEEc-
Q 017839 224 LGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAAL----RGL----VPLHVPLQQR----LPLFDGVLDVVRCG- 290 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~----Rg~----v~~~~g~ae~----LPF~D~SFDlV~s~- 290 (365)
.|||++||||.|+..++..|..|++ +|.++.+.+.+.+ .|+ +.++.+|+.+ +-...+.||+|++-
T Consensus 135 rVLdlf~~tG~~sl~aa~~GA~V~~--VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDP 212 (309)
T d2igta1 135 KVLNLFGYTGVASLVAAAAGAEVTH--VDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 212 (309)
T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred eEEEecCCCcHHHHHHHhCCCeEEE--EeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECC
Confidence 3599999999999999998988776 5556676665543 232 4577777532 23346789999972
Q ss_pred --chh----hcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 --HAV----NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 --~~L----~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+.- ..|.-...+...+..+.++|+|||
T Consensus 213 P~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g 245 (309)
T d2igta1 213 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKA 245 (309)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTC
T ss_pred CcccccccchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 111 123212234456677889999999
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.45 E-value=1.8e-05 Score=72.03 Aligned_cols=95 Identities=8% Similarity=0.089 Sum_probs=62.9
Q ss_pred cCceecccCCccchHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcE
Q 017839 194 SSSFLAFKSELDLPVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPL 269 (365)
Q Consensus 194 ~~~W~~~~g~~~f~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~ 269 (365)
+|.|....+ .++.+++.....++ ..|||||||+|.++..|++++..|+++++| ..+.+.+.++ ..+.+
T Consensus 8 GQnFL~d~~----ii~kIv~~~~~~~~--d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D--~~l~~~l~~~~~~~~n~~i 79 (245)
T d1yuba_ 8 SQNFLTSEK----VLNQIIKQLNLKET--DTVYEIGTGKGHLTTKLAKISKQVTSIELD--SHLFNLSSEKLKLNTRVTL 79 (245)
T ss_dssp CCCBCCCTT----THHHHHHHCCCCSS--EEEEECSCCCSSCSHHHHHHSSEEEESSSS--CSSSSSSSCTTTTCSEEEE
T ss_pred CCcccCCHH----HHHHHHHhcCCCCC--CeEEEECCCccHHHHHHHhhcCceeEeeec--ccchhhhhhhhhhccchhh
Confidence 444544433 35566654322113 456999999999999999999888876665 3343333222 23567
Q ss_pred EeccCCCCCCCCCccceeEEcchhhccc
Q 017839 270 HVPLQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 270 ~~g~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
+.+|+.++++++..++.|+++.-. |+.
T Consensus 80 i~~D~l~~~~~~~~~~~vv~NLPY-~Is 106 (245)
T d1yuba_ 80 IHQDILQFQFPNKQRYKIVGNIPY-HLS 106 (245)
T ss_dssp CCSCCTTTTCCCSSEEEEEEECCS-SSC
T ss_pred hhhhhhccccccceeeeEeeeeeh-hhh
Confidence 778999999998888888887754 444
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.39 E-value=6.6e-05 Score=64.03 Aligned_cols=86 Identities=10% Similarity=0.020 Sum_probs=52.6
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC-CcEEeccCC----CCCCCCCccceeEEcchhhc
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL-VPLHVPLQQ----RLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~-v~~~~g~ae----~LPF~D~SFDlV~s~~~L~~ 295 (365)
+||+|||+|.++...+.+|+.++.+ |.+..+.+.+. ..|. ..+...++. .....+..||+|++.=-. +
T Consensus 45 vLDl~~G~G~~~i~a~~~ga~vv~v--D~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY-~ 121 (171)
T d1ws6a1 45 FLDPFAGSGAVGLEAASEGWEAVLV--EKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY-A 121 (171)
T ss_dssp EEEETCSSCHHHHHHHHTTCEEEEE--CCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT-T
T ss_pred EEEeccccchhhhhhhhccchhhhc--ccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcccc-c
Confidence 5999999999999999999988764 55555555443 2233 233443332 234566789999984211 1
Q ss_pred ccChhhHHHHHHHH--HhhhCCCC
Q 017839 296 WIPVIMMEFLFYDV--DRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei--~RVLRPGG 317 (365)
.... ..+.++ ...|+|||
T Consensus 122 ~~~~----~~l~~l~~~~ll~~~g 141 (171)
T d1ws6a1 122 MDLA----ALFGELLASGLVEAGG 141 (171)
T ss_dssp SCTT----HHHHHHHHHTCEEEEE
T ss_pred cCHH----HHHHHHHHcCCcCCCe
Confidence 1111 123333 36899999
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.34 E-value=0.00028 Score=63.35 Aligned_cols=81 Identities=4% Similarity=0.003 Sum_probs=55.7
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc----CCCcEEeccCCCCCCCCC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR----GLVPLHVPLQQRLPLFDG 282 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R----g~v~~~~g~ae~LPF~D~ 282 (365)
.++.+++.....++ ..||+||||+|.++..|++.+..++++++| ..+.+...++ ..+.++.+|+-.++++..
T Consensus 9 i~~~iv~~~~~~~~--d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D--~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~ 84 (235)
T d1qama_ 9 NIDKIMTNIRLNEH--DNIFEIGSGKGHFTLELVQRCNFVTAIEID--HKLCKTTENKLVDHDNFQVLNKDILQFKFPKN 84 (235)
T ss_dssp HHHHHHTTCCCCTT--CEEEEECCTTSHHHHHHHHHSSEEEEECSC--HHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhcCCCCC--CeEEEECCCchHHHHHHHhCcCceEEEeec--cchHHHHHHHhhcccchhhhhhhhhhcccccc
Confidence 35555554332223 346999999999999999998888775554 6666665544 235678899988888766
Q ss_pred ccceeEEcc
Q 017839 283 VLDVVRCGH 291 (365)
Q Consensus 283 SFDlV~s~~ 291 (365)
....|+++.
T Consensus 85 ~~~~vv~NL 93 (235)
T d1qama_ 85 QSYKIFGNI 93 (235)
T ss_dssp CCCEEEEEC
T ss_pred ccceeeeee
Confidence 555566654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00017 Score=64.25 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=58.8
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHH----HHcC---CCcEEeccCCC-CC-----CCCCccce
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAA----ALRG---LVPLHVPLQQR-LP-----LFDGVLDV 286 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a----~~Rg---~v~~~~g~ae~-LP-----F~D~SFDl 286 (365)
+.||+||||+|.-+..|++. +..+++.+.| +...+.+ ...| .+.++.|++.. ++ ..+++||+
T Consensus 61 k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~--~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 61 KKALDLGTFTGYSALALALALPADGRVVTCEVD--AQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESC--SHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CeEEEEechhhHHHHHHHHhCCCCceEEEEeec--hhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 34599999999999999874 5677776655 3333333 2233 36678786532 32 35789999
Q ss_pred eEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 287 VRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 287 V~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|+.-. +.. .....+..+.+.|||||
T Consensus 139 ifiD~----dk~--~y~~~~~~~~~lL~~GG 163 (219)
T d2avda1 139 AVVDA----DKE--NCSAYYERCLQLLRPGG 163 (219)
T ss_dssp EEECS----CST--THHHHHHHHHHHEEEEE
T ss_pred EEEeC----CHH--HHHHHHHHHHHHhcCCc
Confidence 99854 222 23357788999999999
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0034 Score=58.02 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=78.9
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHH----HcCC--CcEEeccCCC----
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAA----LRGL--VPLHVPLQQR---- 276 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~----~Rg~--v~~~~g~ae~---- 276 (365)
+++.+++.....++ ..+||+-||+|+|+..|++++..|++++.+ +.+.+.+. ..|+ +.++.++.+.
T Consensus 200 l~~~v~~~~~~~~~--~~vlDLycG~G~fsl~La~~~~~V~gvE~~--~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~ 275 (358)
T d1uwva2 200 MVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAASVVGVEGV--PALVEKGQQNARLNGLQNVTFYHENLEEDVTK 275 (358)
T ss_dssp HHHHHHHHHTCCTT--CEEEEESCTTTTTHHHHHTTSSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred HHHHHHHhhccCCC--ceEEEecccccccchhccccccEEEeccCc--HHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence 44555544322112 346999999999999999988888876554 44444332 3344 4577776543
Q ss_pred CCCCCCccceeEEcchhhcccChhhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCceeeEEeecCCCCCC
Q 017839 277 LPLFDGVLDVVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKVKWATANKPNSKN 350 (365)
Q Consensus 277 LPF~D~SFDlV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d~~~ 350 (365)
++.....||+|+.- ++..++...+.++.+. +|.= .-..+.++.. .+.+.||+.. +...--..+..
T Consensus 276 ~~~~~~~~d~vilD------PPR~G~~~~~~~l~~~-~~~~ivYVSCnp~TlaRDl~-~l~~~gy~l~-~i~~~D~FP~T 346 (358)
T d1uwva2 276 QPWAKNGFDKVLLD------PARAGAAGVMQQIIKL-EPIRIVYVSCNPATLARDSE-ALLKAGYTIA-RLAMLDMFPHT 346 (358)
T ss_dssp SGGGTTCCSEEEEC------CCTTCCHHHHHHHHHH-CCSEEEEEESCHHHHHHHHH-HHHHTTCEEE-EEEEECCSTTS
T ss_pred hhhhhccCceEEeC------CCCccHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH-HHHHCCCeEe-EEEEEecCCCC
Confidence 34446789988653 2333333455555543 4443 2222222233 3456789744 44443344544
Q ss_pred CceEEEEeeec
Q 017839 351 GEVYLTALLQK 361 (365)
Q Consensus 351 ~~~y~sall~K 361 (365)
..+=.-|+|+|
T Consensus 347 ~HvE~v~~l~R 357 (358)
T d1uwva2 347 GHLESMVLFSR 357 (358)
T ss_dssp SCCEEEEEEEC
T ss_pred ccEEEEEEEEe
Confidence 44435567765
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=96.71 E-value=0.00087 Score=61.52 Aligned_cols=91 Identities=13% Similarity=0.025 Sum_probs=53.4
Q ss_pred eEEEEcCcccHHHHHHhhc----C---CeEEEeccCCChhHHHHHHH----cC-CCcEEeccCCCCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLY----N---ITILTTTMNLGAPYSEAAAL----RG-LVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~----g---v~Vv~~~ldl~~~~~e~a~~----Rg-~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
.|||.|||+|.|+..+.++ + ..+.|.++| ..+.+.+.. .+ ......++... ......||+|+++=
T Consensus 120 ~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~--~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~vi~NP 196 (328)
T d2f8la1 120 SILDPACGTANLLTTVINQLELKGDVDVHASGVDVD--DLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDL 196 (328)
T ss_dssp EEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESC--HHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEEC
T ss_pred EEEeCCCCcchhHHHHHHHHHhccCccceEEEeccc--HHHHHHHHHHHHHhhhhhhhhcccccc-ccccccccccccCC
Confidence 4599999999998777542 2 345555544 444443322 12 23445554322 23567899999985
Q ss_pred hhhcccChh---------------hHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVI---------------MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~---------------~le~aL~Ei~RVLRPGG 317 (365)
-+....... .-..++..+.+.|+|||
T Consensus 197 Py~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G 237 (328)
T d2f8la1 197 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGG 237 (328)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEE
T ss_pred CCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCC
Confidence 432111110 11135777899999999
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.61 E-value=0.0024 Score=56.86 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=58.1
Q ss_pred ceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHH----HHHcCC---CcEEeccCC-CCC------CCCCccc
Q 017839 223 RLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEA----AALRGL---VPLHVPLQQ-RLP------LFDGVLD 285 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~----a~~Rg~---v~~~~g~ae-~LP------F~D~SFD 285 (365)
+.+|+||+|+|.-+..|++. +..+++.+.|. ...+. ..+.|. +.++.|++. -|| ..+++||
T Consensus 61 k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~--~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 61 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CcEEEecchhhhhHHHHHhhCCCCcEEEEEeccc--hhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 44699999999999999863 56777766653 33322 233343 667778653 232 2467899
Q ss_pred eeEEcchhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+|+.-. +.. .....+..+.+.|||||
T Consensus 139 ~iFiDa----~k~--~y~~~~e~~~~ll~~gG 164 (227)
T d1susa1 139 FIFVDA----DKD--NYLNYHKRLIDLVKVGG 164 (227)
T ss_dssp EEEECS----CST--THHHHHHHHHHHBCTTC
T ss_pred EEEecc----chh--hhHHHHHHHHhhcCCCc
Confidence 999743 332 23357788899999999
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.55 E-value=0.0017 Score=55.18 Aligned_cols=64 Identities=6% Similarity=-0.051 Sum_probs=39.0
Q ss_pred eEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L 293 (365)
.+||.|||+|.|+..+.++ ...+.+.++|.. .... .+ ...+..++..... ....||+|+++--.
T Consensus 22 ~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~--~~~~--~~-~~~~~~~~~~~~~-~~~~fd~ii~npP~ 88 (223)
T d2ih2a1 22 RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK--ALDL--PP-WAEGILADFLLWE-PGEAFDLILGNPPY 88 (223)
T ss_dssp EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTT--TCCC--CT-TEEEEESCGGGCC-CSSCEEEEEECCCC
T ss_pred EEEECCCchHHHHHHHHHhccccceEEeeecCHH--HHhh--cc-cceeeeeehhccc-cccccceecccCcc
Confidence 3599999999998888764 356777666531 1100 00 1234555543333 45789999988643
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.55 E-value=0.0044 Score=57.43 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=73.9
Q ss_pred HHHHhhhccccCCCCceEEEEcCcccHHHHHHhhc---CCeEEEeccCCChhHHHHH----HHcCCCc--EEeccCCCCC
Q 017839 208 VTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLY---NITILTTTMNLGAPYSEAA----ALRGLVP--LHVPLQQRLP 278 (365)
Q Consensus 208 I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~---gv~Vv~~~ldl~~~~~e~a----~~Rg~v~--~~~g~ae~LP 278 (365)
...+++..+ |. .|||+++|.|.=+..+++. ...+++. |.+....+.+ ...|... ....++..++
T Consensus 108 ~~~~l~~~~---g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a~--d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~ 180 (313)
T d1ixka_ 108 PPVALDPKP---GE--IVADMAAAPGGKTSYLAQLMRNDGVIYAF--DVDENRLRETRLNLSRLGVLNVILFHSSSLHIG 180 (313)
T ss_dssp HHHHHCCCT---TC--EEEECCSSCSHHHHHHHHHTTTCSEEEEE--CSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG
T ss_pred hhhcccCCc---cc--eeeecccchhhhhHhhhhhcccccceeee--ccCHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 344454444 54 4599999999876666653 3456654 4444433322 2235433 3445667777
Q ss_pred CCCCccceeEE----cch--hh-------cccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhHHHHH
Q 017839 279 LFDGVLDVVRC----GHA--VN-------RWIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVYGPLI 330 (365)
Q Consensus 279 F~D~SFDlV~s----~~~--L~-------~w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l 330 (365)
..++.||.|.. +.. +. .|... ......|....+.||||| ..+|.+++....+
T Consensus 181 ~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L 260 (313)
T d1ixka_ 181 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWAL 260 (313)
T ss_dssp GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHH
Confidence 78899999984 321 11 11111 112346788899999999 4566666677788
Q ss_pred HhhCCcee
Q 017839 331 GKLGYKKV 338 (365)
Q Consensus 331 ~~~gfk~i 338 (365)
++.+++.+
T Consensus 261 ~~~~~~~~ 268 (313)
T d1ixka_ 261 DNFDVELL 268 (313)
T ss_dssp HHSSEEEE
T ss_pred hcCCCEEe
Confidence 88776543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.0011 Score=56.56 Aligned_cols=88 Identities=9% Similarity=-0.056 Sum_probs=53.4
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----cCC--CcEEeccCCC-CCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----RGL--VPLHVPLQQR-LPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----Rg~--v~~~~g~ae~-LPF~D~SFDlV~s~~~L~~ 295 (365)
.+||++||||.++...+.+|+ .|+.++.| ....+.+.+ .+. +.++.+++.. +.-.+..||+|++-=-.
T Consensus 46 ~vLDlfaGsG~~giealsrGa~~v~~VE~~--~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY-- 121 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAAGATLIEMD--RAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF-- 121 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEECSC--HHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS--
T ss_pred hhhhhhccccceeeeEEecCcceeEEEEEe--echhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc--
Confidence 359999999999999999996 46654444 444443322 222 3456666433 44567899999985321
Q ss_pred ccChhhHHHHHHHH--HhhhCCCC
Q 017839 296 WIPVIMMEFLFYDV--DRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei--~RVLRPGG 317 (365)
.. ...+..+.-+ ..+|+|+|
T Consensus 122 -~~-~~~~~~l~~l~~~~~L~~~~ 143 (183)
T d2fpoa1 122 -RR-GLLEETINLLEDNGWLADEA 143 (183)
T ss_dssp -ST-TTHHHHHHHHHHTTCEEEEE
T ss_pred -cc-chHHHHHHHHHHCCCCCCCe
Confidence 11 1122333333 35789999
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.31 E-value=0.0051 Score=52.95 Aligned_cols=128 Identities=14% Similarity=0.027 Sum_probs=77.1
Q ss_pred hHHHHhhhccccCCCCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC--CCcEEeccCCC----C-CC
Q 017839 207 PVTQFLDLAKAANSVIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG--LVPLHVPLQQR----L-PL 279 (365)
Q Consensus 207 ~I~~vL~~~p~~~g~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg--~v~~~~g~ae~----L-PF 279 (365)
+++++++.....+|. +++|..+|.|..+..+.+++..|++.+.| ..+.+.+..+- .+.++.+.-.. + .+
T Consensus 6 ll~Evl~~l~~~~g~--~~vD~T~G~GGhs~~iL~~~~~viaiD~D--~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 6 LYQEALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIGLDQD--PEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp THHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHhcccCcEEEEhhh--hhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 566777643222254 46999999999999999988888875554 55555554432 24455553222 2 23
Q ss_pred CCCccceeEEcchhhccc--Ch----hhHHHHHHHHHhhhCCCC------CcchhhhhHHHHHHhhCCcee
Q 017839 280 FDGVLDVVRCGHAVNRWI--PV----IMMEFLFYDVDRVLRGGG------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 280 ~D~SFDlV~s~~~L~~w~--d~----~~le~aL~Ei~RVLRPGG------~~~~l~~~~~~~l~~~gfk~i 338 (365)
..+.+|.|..-..+..+. +. ..+...|.....+|+||| ....-++.+.+.+++.+++.+
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k~i 152 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVL 152 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSEES
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccceec
Confidence 456789888655442221 10 123346778899999999 111112346677777777655
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=96.30 E-value=0.004 Score=57.89 Aligned_cols=92 Identities=16% Similarity=0.079 Sum_probs=58.0
Q ss_pred ceEEEEcCcccHHHHHHhhcC--CeEEEeccCCChhHHHHHHHc-----------CCCcEEeccCCC-CCCCCCccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLYN--ITILTTTMNLGAPYSEAAALR-----------GLVPLHVPLQQR-LPLFDGVLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~~~~e~a~~R-----------g~v~~~~g~ae~-LPF~D~SFDlV~ 288 (365)
+.||.||.|.|..+..+.+.. ..|..+++| +...+.+.+. ..+.++.+|+.. |.-.++.||+|+
T Consensus 79 k~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD--~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 79 KRVLIVGGGEGATLREVLKHPTVEKAVMVDID--GELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CEEEEEECTTSHHHHHHTTSTTCCEEEEEESC--HHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred ceEEEeCCCchHHHHHHHhcCCcceEEEecCC--HHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 456999999999999988763 355554554 5555544321 235677777543 223467899999
Q ss_pred EcchhhcccCh---hh--HHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPV---IM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~---~~--le~aL~Ei~RVLRPGG 317 (365)
.-. ...+... .. -..+++.+.|.|+|||
T Consensus 157 ~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G 189 (312)
T d1uira_ 157 IDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGG 189 (312)
T ss_dssp EEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEE
T ss_pred EeC-CCcccccchhhhhhhHHHHHHHHHhcCCCc
Confidence 532 1112110 00 1357899999999999
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.29 E-value=0.0009 Score=61.21 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=56.5
Q ss_pred ceEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHHH----------------cCCCcEEeccCCCCCCCCCccc
Q 017839 223 RLGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAAL----------------RGLVPLHVPLQQRLPLFDGVLD 285 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~~----------------Rg~v~~~~g~ae~LPF~D~SFD 285 (365)
+.||.||+|.|..+..+.+++. .|..+++ ++...+.+.+ ...+.++.+|+...--.++.||
T Consensus 74 ~~vLiiG~G~G~~~~~~l~~~~~~v~~VEi--D~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yD 151 (276)
T d1mjfa_ 74 KRVLVIGGGDGGTVREVLQHDVDEVIMVEI--DEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD 151 (276)
T ss_dssp CEEEEEECTTSHHHHHHTTSCCSEEEEEES--CHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred ceEEEecCCchHHHHHHHHhCCceEEEecC--CHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCC
Confidence 4459999999999999887753 4444444 4555555432 1134567776532211367899
Q ss_pred eeEEcchhhcccChhhH--HHHHHHHHhhhCCCC
Q 017839 286 VVRCGHAVNRWIPVIMM--EFLFYDVDRVLRGGG 317 (365)
Q Consensus 286 lV~s~~~L~~w~d~~~l--e~aL~Ei~RVLRPGG 317 (365)
+|+.-. .........+ ..++..+.|.|+|||
T Consensus 152 vIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~G 184 (276)
T d1mjfa_ 152 VIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPG 184 (276)
T ss_dssp EEEEEC-CCCC-----TTSHHHHHHHHHHEEEEE
T ss_pred EEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCc
Confidence 999633 2222211110 357999999999999
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.083 Score=47.69 Aligned_cols=136 Identities=9% Similarity=0.035 Sum_probs=74.7
Q ss_pred eEEEEcCcccHHHHHHhhcC--CeEEEeccCCCh--hHHHHHHHcCCCcE-EeccCCCC--CCCCCccceeE----Ecc-
Q 017839 224 LGIDVGGATGSFAARMKLYN--ITILTTTMNLGA--PYSEAAALRGLVPL-HVPLQQRL--PLFDGVLDVVR----CGH- 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~g--v~Vv~~~ldl~~--~~~e~a~~Rg~v~~-~~g~ae~L--PF~D~SFDlV~----s~~- 291 (365)
.|||+++|.|.=+..|++.+ ..+++.+.+... .+.+.+...|.-.. ...+.... +...+.||.|. |+.
T Consensus 105 ~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~ 184 (284)
T d1sqga2 105 HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSAT 184 (284)
T ss_dssp EEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCCCG
T ss_pred eeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecccccc
Confidence 46999999999888887753 566665655321 11222333344222 22222221 23467899998 333
Q ss_pred -hhh-------cccCh------hhHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhh-CCceeeE-------
Q 017839 292 -AVN-------RWIPV------IMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKL-GYKKVKW------- 340 (365)
Q Consensus 292 -~L~-------~w~d~------~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~-gfk~i~w------- 340 (365)
++. .|.+. ......|....+.||||| ..+|.+++....+++. +|+.+..
T Consensus 185 G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~~~~~~~~~~ 264 (284)
T d1sqga2 185 GVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPG 264 (284)
T ss_dssp GGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECSSBCSSSBS
T ss_pred CccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcEEecCCCCCCCc
Confidence 221 22221 112356788889999999 4566666677777763 4554432
Q ss_pred -EeecCCCCCCCceEEEEeeec
Q 017839 341 -ATANKPNSKNGEVYLTALLQK 361 (365)
Q Consensus 341 -~v~~K~d~~~~~~y~sall~K 361 (365)
.+-...+ +.++.|+ |+|+|
T Consensus 265 ~~~~P~~~-~~dGFF~-A~l~K 284 (284)
T d1sqga2 265 KQNLPGAE-EGDGFFY-AKLIK 284 (284)
T ss_dssp EEECCCTT-SCCSEEE-EEEEC
T ss_pred EEECCCCC-CcccEEE-EEEEC
Confidence 1111111 2345555 99988
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.64 E-value=0.0045 Score=56.46 Aligned_cols=91 Identities=13% Similarity=-0.021 Sum_probs=47.1
Q ss_pred EEEEcCcccHHHHHHhhcC--CeEEEec--cCCC-hhHHHHHHHcCCCcEEec-cCCCCCCCCCccceeEEcchhh--cc
Q 017839 225 GIDVGGATGSFAARMKLYN--ITILTTT--MNLG-APYSEAAALRGLVPLHVP-LQQRLPLFDGVLDVVRCGHAVN--RW 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~g--v~Vv~~~--ldl~-~~~~e~a~~Rg~v~~~~g-~ae~LPF~D~SFDlV~s~~~L~--~w 296 (365)
++|+|||.|.++.+++++. ..|.+.+ .|.. .|+.......+++.+... +...+ ++...|+|+|--+-. ++
T Consensus 70 vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l--~~~~~D~vlcDm~ess~~~ 147 (257)
T d2p41a1 70 VVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLLCDIGESSPNP 147 (257)
T ss_dssp EEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEEECCCCCCSSH
T ss_pred EEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhc--CCCcCCEEEeeCCCCCCCc
Confidence 5999999999999999874 2333332 2321 111100001122333333 23344 477899999975421 11
Q ss_pred cChh-hHHHHHHHHHhhhCCCC
Q 017839 297 IPVI-MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 297 ~d~~-~le~aL~Ei~RVLRPGG 317 (365)
.-+. .--.+|.=+.+.|+|||
T Consensus 148 ~vd~~Rtl~vLela~~wLk~gg 169 (257)
T d2p41a1 148 TVEAGRTLRVLNLVENWLSNNT 169 (257)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTC
T ss_pred hhhhhhHHHHHHHHHHHcccCC
Confidence 0000 00123444457899999
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.012 Score=53.81 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=45.2
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHc-------CCCcEEeccCCCCCCCCCccceeEEcc
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALR-------GLVPLHVPLQQRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~R-------g~v~~~~g~ae~LPF~D~SFDlV~s~~ 291 (365)
..||+||+|+|.++..|++++..++++.+| ..+.+...++ +.+.++.+|+-...++ .++.|+++.
T Consensus 23 d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D--~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~--~~~~vV~NL 94 (278)
T d1zq9a1 23 DVVLEVGPGTGNMTVKLLEKAKKVVACELD--PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANL 94 (278)
T ss_dssp CEEEEECCTTSTTHHHHHHHSSEEEEEESC--HHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEEC
T ss_pred CEEEEECCCchHHHHHHHhcCCcEEEEEEc--cchhHHHHHHHhhhccccchhhhHHHHhhhhhh--hhhhhhcch
Confidence 456999999999999999998888876665 4555444332 2356777887665544 356677664
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.0069 Score=54.65 Aligned_cols=55 Identities=2% Similarity=0.003 Sum_probs=39.5
Q ss_pred ceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcC----CCcEEeccCCCCCC
Q 017839 223 RLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRG----LVPLHVPLQQRLPL 279 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg----~v~~~~g~ae~LPF 279 (365)
+.+|+||||+|.++..|++++..++++++| ..+.+...++- .+.++.+|+..+++
T Consensus 23 d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD--~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 23 QAMVEIGPGLAALTEPVGERLDQLTVIELD--RDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CCEEEECCTTTTTHHHHHTTCSCEEEECCC--HHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred CEEEEECCCchHHHHHHHccCCceEEEEec--cchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 346999999999999999999888876655 56655554432 24567777765543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=95.22 E-value=0.0037 Score=53.35 Aligned_cols=88 Identities=9% Similarity=-0.016 Sum_probs=53.4
Q ss_pred eEEEEcCcccHHHHHHhhcCCe-EEEeccCCChhHHHHHHH----cC---CCcEEeccCCC----CCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNIT-ILTTTMNLGAPYSEAAAL----RG---LVPLHVPLQQR----LPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv~-Vv~~~ldl~~~~~e~a~~----Rg---~v~~~~g~ae~----LPF~D~SFDlV~s~~ 291 (365)
.+||++||||.++...+.+|+. |+.++.| ....+.+.+ .+ .+.++.+++.+ +.-....||+|++-=
T Consensus 44 ~vLDlfaGsG~~g~ea~srGa~~v~~ve~~--~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP 121 (182)
T d2fhpa1 44 MALDLYSGSGGLAIEAVSRGMDKSICIEKN--FAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP 121 (182)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEcccccccccceeeecchhHHHHHHHH--HHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEech
Confidence 4599999999999999999964 6654444 444443322 23 24567776543 222456899998742
Q ss_pred hhhcccChhhHHHHHHHHH--hhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVD--RVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~--RVLRPGG 317 (365)
=. . .......+..+. ..|+|+|
T Consensus 122 PY---~-~~~~~~~l~~i~~~~~L~~~g 145 (182)
T d2fhpa1 122 PY---A-KQEIVSQLEKMLERQLLTNEA 145 (182)
T ss_dssp CG---G-GCCHHHHHHHHHHTTCEEEEE
T ss_pred hh---h-hhHHHHHHHHHHHCCCCCCCE
Confidence 11 0 012234455543 4789999
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.01 Score=52.05 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=54.6
Q ss_pred eEEEEcCcccHHHHHHhhc--CCeEEEeccCCChhH---HH-HHHHcCC--CcEEeccCCCCCCCCCccceeEEcchhhc
Q 017839 224 LGIDVGGATGSFAARMKLY--NITILTTTMNLGAPY---SE-AAALRGL--VPLHVPLQQRLPLFDGVLDVVRCGHAVNR 295 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~--gv~Vv~~~ldl~~~~---~e-~a~~Rg~--v~~~~g~ae~LPF~D~SFDlV~s~~~L~~ 295 (365)
.++|||+|.|.-+.-++=. +..++-+ |..... .+ .+.+-|+ +.++.+.++.+. .+..||+|+|.-+- .
T Consensus 68 ~ilDiGsGaG~PGi~laI~~p~~~~~Lv--es~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~-~ 143 (207)
T d1jsxa_ 68 RFIDVGTGPGLPGIPLSIVRPEAHFTLL--DSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA-S 143 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS-S
T ss_pred ceeeeeccCCceeeehhhhcccceEEEE--ecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhc-C
Confidence 3599999999877777642 4555433 322222 22 2334454 455667788875 46789999886542 1
Q ss_pred ccChhhHHHHHHHHHhhhCCCC
Q 017839 296 WIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 296 w~d~~~le~aL~Ei~RVLRPGG 317 (365)
+...+.-..+.+++||
T Consensus 144 ------~~~ll~~~~~~l~~~g 159 (207)
T d1jsxa_ 144 ------LNDMVSWCHHLPGEQG 159 (207)
T ss_dssp ------HHHHHHHHTTSEEEEE
T ss_pred ------HHHHHHHHHHhcCCCc
Confidence 3357777888999999
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=94.75 E-value=0.015 Score=52.11 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=63.3
Q ss_pred eEEEEcCcccHHHHHHhh-c-CCeEEEeccCCChh---HHHHH-HHcCC--CcEEeccCCCCCCC---CCccceeEEcch
Q 017839 224 LGIDVGGATGSFAARMKL-Y-NITILTTTMNLGAP---YSEAA-ALRGL--VPLHVPLQQRLPLF---DGVLDVVRCGHA 292 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae-~-gv~Vv~~~ldl~~~---~~e~a-~~Rg~--v~~~~g~ae~LPF~---D~SFDlV~s~~~ 292 (365)
.++|||+|.|.-+.-|+= . +..+.- +|...- +.+.+ .+-|+ +.++.+.+|.+... .+.||+|+|.-+
T Consensus 73 ~ilDiGSGaGfPGi~laI~~p~~~v~L--ves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv 150 (239)
T d1xdza_ 73 TICDVGAGAGFPSLPIKICFPHLHVTI--VDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (239)
T ss_dssp EEEEECSSSCTTHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred eEEeecCCCchHHHHHHHhCCCcccee--ecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhh
Confidence 459999999988777764 2 444432 232222 22322 33354 34455556655432 468999999754
Q ss_pred hhcccChhhHHHHHHHHHhhhCCCC---------CcchhhhhHHHHHHhhCCcee
Q 017839 293 VNRWIPVIMMEFLFYDVDRVLRGGG---------KASDLENVYGPLIGKLGYKKV 338 (365)
Q Consensus 293 L~~w~d~~~le~aL~Ei~RVLRPGG---------~~~~l~~~~~~~l~~~gfk~i 338 (365)
- .+...+.=....+++|| ..+++.+ ....+..+||+..
T Consensus 151 a-------~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~-a~~~~~~~~~~~~ 197 (239)
T d1xdza_ 151 A-------RLSVLSELCLPLVKKNGLFVALKAASAEEELNA-GKKAITTLGGELE 197 (239)
T ss_dssp S-------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHH-HHHHHHHTTEEEE
T ss_pred h-------CHHHHHHHHhhhcccCCEEEEECCCChHHHHHH-HHHHHHHcCCEEE
Confidence 2 23457778899999999 2233332 4556778887654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.02 Score=52.36 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=57.1
Q ss_pred ceEEEEcCcccHHHHHHhhc-C-CeEEEeccCCChhHHHHHHH----------cCCCcEEeccCCC-CCCCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLY-N-ITILTTTMNLGAPYSEAAAL----------RGLVPLHVPLQQR-LPLFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-g-v~Vv~~~ldl~~~~~e~a~~----------Rg~v~~~~g~ae~-LPF~D~SFDlV~s 289 (365)
+.+|-||.|.|..+..+.+. + ..|+.+++| +...+.+.+ ...+.++.+|+.. |--.+++||+|++
T Consensus 80 k~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD--~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 80 RKVLIIGGGDGGVLREVVKHPSVESVVQCEID--EDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CeEEEeCCCchHHHHHHHHcCCcceeeeccCC--HHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 45699999999999999886 3 455554555 555555432 1245677777532 2224678999997
Q ss_pred cchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
-. ......... -..++..+.|.|+|||
T Consensus 158 D~-~~p~~~~~~L~t~eF~~~~~~~L~~~G 186 (285)
T d2o07a1 158 DS-SDPMGPAESLFKESYYQLMKTALKEDG 186 (285)
T ss_dssp EC-C-----------CHHHHHHHHHEEEEE
T ss_pred cC-CCCCCcccccccHHHHHHHHHhcCCCC
Confidence 43 221111111 1246899999999999
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.60 E-value=0.042 Score=50.19 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=58.2
Q ss_pred ceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHH----------cCCCcEEeccCCC-C-CCCCCccceeE
Q 017839 223 RLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAAL----------RGLVPLHVPLQQR-L-PLFDGVLDVVR 288 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~----------Rg~v~~~~g~ae~-L-PF~D~SFDlV~ 288 (365)
+.||=||.|.|..+..+.+. ++ .+..+++| +...+.+.+ ...+.++.+|+.. + -..++.||+|+
T Consensus 82 k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD--~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 82 KKVLVIGGGDGGVLREVARHASIEQIDMCEID--KMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CEEEEETCSSSHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred cceEEecCCchHHHHHHHhcccceeeEEecCC--HHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 45699999999999999886 44 45554555 555554432 2335677776432 2 23567999999
Q ss_pred EcchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 289 CGHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 289 s~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
.-. ...+..... -..+++.+.|.|+|||
T Consensus 160 ~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~G 189 (290)
T d1xj5a_ 160 VDS-SDPIGPAKELFEKPFFQSVARALRPGG 189 (290)
T ss_dssp ECC-CCTTSGGGGGGSHHHHHHHHHHEEEEE
T ss_pred EcC-CCCCCcchhhCCHHHHHHHHHhcCCCc
Confidence 632 111111110 1357999999999999
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.29 E-value=0.029 Score=52.14 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=55.6
Q ss_pred ceEEEEcCcccHHHHHHhhcC-C-eEEEeccCCChhHHHHHHHc----------CCCcEEeccCCC-CCCCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLYN-I-TILTTTMNLGAPYSEAAALR----------GLVPLHVPLQQR-LPLFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g-v-~Vv~~~ldl~~~~~e~a~~R----------g~v~~~~g~ae~-LPF~D~SFDlV~s 289 (365)
+.||-||.|.|..+..+.+.. + .|..+++| +...+.+.+- ..+.++.+|+.. +--.++.||+|++
T Consensus 108 k~VLIiGgG~G~~~rellk~~~v~~v~~VEID--~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 108 KRVLIIGGGDGGILREVLKHESVEKVTMCEID--EMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp CEEEEESCTTSHHHHHHTTCTTCCEEEEECSC--HHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CeEEEeCCCchHHHHHHHHcCCcceEEEEccc--HHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 456999999999999998863 3 45554554 5565554431 124566666432 2224678999996
Q ss_pred cchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
-.. ....+... -..++..+.|.|+|||
T Consensus 186 D~~-dp~~~~~~L~t~eFy~~~~~~L~~~G 214 (312)
T d2b2ca1 186 DSS-DPVGPAESLFGQSYYELLRDALKEDG 214 (312)
T ss_dssp CCC--------------HHHHHHHHEEEEE
T ss_pred cCC-CCCCcchhhhhHHHHHHHHhhcCCCc
Confidence 432 11111111 1347899999999999
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=93.73 E-value=0.084 Score=47.67 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=57.7
Q ss_pred ceEEEEcCcccHHHHHHhhc-CC-eEEEeccCCChhHHHHHHH----------cCCCcEEeccCCC-CCCCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLY-NI-TILTTTMNLGAPYSEAAAL----------RGLVPLHVPLQQR-LPLFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~----------Rg~v~~~~g~ae~-LPF~D~SFDlV~s 289 (365)
+.||-||.|.|..+..+.++ ++ .|..+++| +...+.+.. ...+.++.+|+.. |--.++.||+|+.
T Consensus 77 ~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID--~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 77 EHVLVVGGGDGGVIREILKHPSVKKATLVDID--GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp CEEEEESCTTCHHHHHHTTCTTCSEEEEEESC--HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred ceEEecCCCCcHHHHHHHhcCCcceEEEecCC--HHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 44699999999999999886 43 45444554 455544432 1235677777533 2234678999996
Q ss_pred cchhhcccChhh--HHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWIPVIM--MEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~d~~~--le~aL~Ei~RVLRPGG 317 (365)
-.. ..+..... -+.++..+.|.|+|||
T Consensus 155 D~~-~p~~~~~~L~t~eFy~~~~~~L~~~G 183 (274)
T d1iy9a_ 155 DST-EPVGPAVNLFTKGFYAGIAKALKEDG 183 (274)
T ss_dssp SCS-SCCSCCCCCSTTHHHHHHHHHEEEEE
T ss_pred cCC-CCCCcchhhccHHHHHHHHhhcCCCc
Confidence 432 11111100 1257899999999999
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=93.62 E-value=0.029 Score=51.58 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=56.4
Q ss_pred ceEEEEcCcccHHHHHHhhcC-C-eEEEeccCCChhHHHHHHH----------cCCCcEEeccCCC-CCCCCCccceeEE
Q 017839 223 RLGIDVGGATGSFAARMKLYN-I-TILTTTMNLGAPYSEAAAL----------RGLVPLHVPLQQR-LPLFDGVLDVVRC 289 (365)
Q Consensus 223 Ri~LDIGCGtG~faa~Lae~g-v-~Vv~~~ldl~~~~~e~a~~----------Rg~v~~~~g~ae~-LPF~D~SFDlV~s 289 (365)
+.||=||.|.|..+..+.++. + .|..+++| +.+.+.+.+ ...+.++.+|+.. |-=.++.||+|++
T Consensus 91 k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEID--p~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 91 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVD--GLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEEEESC--HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred ceEEEecCCchHHHHHHHhcCCCceEEEecCC--HHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 456999999999999998863 3 45554554 555554432 1235677776432 2224678999996
Q ss_pred cchhhccc-Chh--hHHHHHHHHHhhhCCCC
Q 017839 290 GHAVNRWI-PVI--MMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 290 ~~~L~~w~-d~~--~le~aL~Ei~RVLRPGG 317 (365)
-. ...+. +.. --..++..+.|.|+|||
T Consensus 169 D~-~dp~~~~~~~L~t~efy~~~~~~L~~~G 198 (295)
T d1inla_ 169 DS-TDPTAGQGGHLFTEEFYQACYDALKEDG 198 (295)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEE
T ss_pred cC-CCCCcCchhhhccHHHHHHHHhhcCCCc
Confidence 42 22221 100 01358999999999999
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=92.82 E-value=0.087 Score=44.26 Aligned_cols=88 Identities=10% Similarity=0.013 Sum_probs=49.0
Q ss_pred eEEEEcCcccHHHHHHhhcCC-eEEEeccCCChhHHHHHH----HcCC----CcEEeccC---CCCCCCCCccceeEEcc
Q 017839 224 LGIDVGGATGSFAARMKLYNI-TILTTTMNLGAPYSEAAA----LRGL----VPLHVPLQ---QRLPLFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~gv-~Vv~~~ldl~~~~~e~a~----~Rg~----v~~~~g~a---e~LPF~D~SFDlV~s~~ 291 (365)
.+||+-||||.++.....+|+ .|+-++. +....+.+. .-+. ..++..++ .........||+|++-=
T Consensus 46 ~vLDlFaGsG~~glEalSRGA~~v~fVE~--~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 46 ECLDGFAGSGSLGFEALSRQAKKVTFLEL--DKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEECS--CHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred eEeecccCccceeeeeeeecceeeEEeec--ccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence 359999999999999999996 4544343 344433322 1122 22333332 23344566799998742
Q ss_pred hhhcccChhhHHHHHHHH--HhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDV--DRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei--~RVLRPGG 317 (365)
=.. . ...+..+.-+ ...|+++|
T Consensus 124 PY~-~---~~~~~~l~~l~~~~~L~~~~ 147 (183)
T d2ifta1 124 PFH-F---NLAEQAISLLCENNWLKPNA 147 (183)
T ss_dssp CSS-S---CHHHHHHHHHHHTTCEEEEE
T ss_pred hHh-h---hhHHHHHHHHHHhCCcCCCc
Confidence 110 0 1122333333 35788888
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=92.26 E-value=0.1 Score=46.09 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=50.5
Q ss_pred eEEEEcCcccHHHHHHhh----c--CCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC----CCCCccceeEEcchh
Q 017839 224 LGIDVGGATGSFAARMKL----Y--NITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP----LFDGVLDVVRCGHAV 293 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae----~--gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP----F~D~SFDlV~s~~~L 293 (365)
++|+||++.|.-+..+++ . ..++++++++..... ........+.++.++....- +.+..||+|+.-..
T Consensus 83 ~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~- 160 (232)
T d2bm8a1 83 TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-IPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA- 160 (232)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-
T ss_pred EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-hhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC-
Confidence 459999999976655543 2 367888777642110 01112234678888654322 34667898875332
Q ss_pred hcccChhhHHHHHHHHHhhhCCCC
Q 017839 294 NRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 294 ~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
|..... + .-.+....|+|||
T Consensus 161 -H~~~~v-~--~~~~~~~lLk~GG 180 (232)
T d2bm8a1 161 -HANTFN-I--MKWAVDHLLEEGD 180 (232)
T ss_dssp -CSSHHH-H--HHHHHHHTCCTTC
T ss_pred -cchHHH-H--HHHHHhcccCcCC
Confidence 322211 1 2125678999999
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=89.79 E-value=0.68 Score=37.12 Aligned_cols=80 Identities=15% Similarity=0.028 Sum_probs=53.9
Q ss_pred EEEcCc--ccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCCCCccceeEEcchhhcccChhhHH
Q 017839 226 IDVGGA--TGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLFDGVLDVVRCGHAVNRWIPVIMME 303 (365)
Q Consensus 226 LDIGCG--tG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~D~SFDlV~s~~~L~~w~d~~~le 303 (365)
.=||+| .+.+|..|.+.|..|++. |.+....+.+.+.|.+.....+.+.+ ...|+|+..- +....+
T Consensus 4 ~iIG~G~mG~~lA~~l~~~g~~V~~~--d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIilav------p~~~~~ 71 (165)
T d2f1ka2 4 GVVGLGLIGASLAGDLRRRGHYLIGV--SRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLCT------PIQLIL 71 (165)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEE--CSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEECS------CHHHHH
T ss_pred EEEeecHHHHHHHHHHHHCCCEEEEE--ECCchHHHHHHHhhccceeeeecccc----cccccccccC------cHhhhh
Confidence 346887 456788888889998865 44455566677777665444444433 3568887532 233466
Q ss_pred HHHHHHHhhhCCCC
Q 017839 304 FLFYDVDRVLRGGG 317 (365)
Q Consensus 304 ~aL~Ei~RVLRPGG 317 (365)
.++.|+...|+++-
T Consensus 72 ~vl~~l~~~l~~~~ 85 (165)
T d2f1ka2 72 PTLEKLIPHLSPTA 85 (165)
T ss_dssp HHHHHHGGGSCTTC
T ss_pred hhhhhhhhhccccc
Confidence 78899999999988
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=89.08 E-value=0.29 Score=45.90 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=19.3
Q ss_pred cCCCCCCCCCccceeEEcchhhccc
Q 017839 273 LQQRLPLFDGVLDVVRCGHAVNRWI 297 (365)
Q Consensus 273 ~ae~LPF~D~SFDlV~s~~~L~~w~ 297 (365)
+-..==||++|.|++||+.++ ||.
T Consensus 129 SFY~rLfP~~Slh~~~Ss~al-HWL 152 (359)
T d1m6ex_ 129 SFYGRLFPRNTLHFIHSSYSL-MWL 152 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCT-TBC
T ss_pred chhhhcCCCCceEEeeehhhh-hhh
Confidence 334444899999999999999 785
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.51 E-value=0.28 Score=41.48 Aligned_cols=67 Identities=12% Similarity=0.012 Sum_probs=38.9
Q ss_pred CCCccceeEEcchh----hccc---Ch----hhHHHHHHHHHhhhCCCC----C-cchhhhhHHHHHHhhCCceeeEEee
Q 017839 280 FDGVLDVVRCGHAV----NRWI---PV----IMMEFLFYDVDRVLRGGG----K-ASDLENVYGPLIGKLGYKKVKWATA 343 (365)
Q Consensus 280 ~D~SFDlV~s~~~L----~~w~---d~----~~le~aL~Ei~RVLRPGG----~-~~~l~~~~~~~l~~~gfk~i~w~v~ 343 (365)
+|+|+|+|++.==. ..|. +. +.+...+.|++||||||| . .......+...+...||....+.+=
T Consensus 20 pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~iiW 99 (256)
T d1g60a_ 20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITW 99 (256)
T ss_dssp CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhhhhhhhhhcccceeeeeeEe
Confidence 47888888876311 1111 11 123457899999999999 1 1221222455678889876555544
Q ss_pred cCC
Q 017839 344 NKP 346 (365)
Q Consensus 344 ~K~ 346 (365)
.|.
T Consensus 100 ~k~ 102 (256)
T d1g60a_ 100 DKR 102 (256)
T ss_dssp CCC
T ss_pred eec
Confidence 443
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=87.77 E-value=1.8 Score=37.32 Aligned_cols=133 Identities=10% Similarity=0.041 Sum_probs=73.6
Q ss_pred EEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCC-CCccceeEEcchhhcc-------
Q 017839 225 GIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLF-DGVLDVVRCGHAVNRW------- 296 (365)
Q Consensus 225 ~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~-D~SFDlV~s~~~L~~w------- 296 (365)
+||+=||.|.+..-|.+.|+.++. +.|.++...+.....---..+.+|...+... -..+|+++.+.-=..|
T Consensus 3 ~~~lF~G~Gg~~~gl~~aG~~~~~-a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~~~ 81 (324)
T d1dcta_ 3 LISLFSGAGGLDLGFQKAGFRIIC-ANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGSLR 81 (324)
T ss_dssp EEEESCSSCHHHHHHHHHTCEEEE-EEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSCCC
T ss_pred EEEeCcCcCHHHHHHHHCCCEEEE-EEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeecccccccccccccc
Confidence 499999999998888777887763 3444454444433321123456776665322 1258999976521111
Q ss_pred --cChh-hHHHHHHHHHhhhCCCC----C-----cchhhh---hHHHHHHhhCCceeeEEeecCCC---C-CCCceEEEE
Q 017839 297 --IPVI-MMEFLFYDVDRVLRGGG----K-----ASDLEN---VYGPLIGKLGYKKVKWATANKPN---S-KNGEVYLTA 357 (365)
Q Consensus 297 --~d~~-~le~aL~Ei~RVLRPGG----~-----~~~l~~---~~~~~l~~~gfk~i~w~v~~K~d---~-~~~~~y~sa 357 (365)
.+.. .+=..+.++-+.+||.- . .....+ .....++.+||. +.|.+.+-.| + .+..+|+.|
T Consensus 82 g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~-v~~~vlna~~~GvPQ~R~R~fiv~ 160 (324)
T d1dcta_ 82 GIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD-VHIILLNANDYGVAQDRKRVFYIG 160 (324)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEE-EEEEEEEGGGGTCSBCCEEEEEEE
T ss_pred cccccccchHHHHHHHHHhhCCceeeccccccccccccchhhHHHHhHHhhCCCc-cceeeeecccccCchhhceeeEee
Confidence 1211 11122344555677776 0 011111 234556778997 5566554444 2 567788877
Q ss_pred ee
Q 017839 358 LL 359 (365)
Q Consensus 358 ll 359 (365)
+.
T Consensus 161 ~r 162 (324)
T d1dcta_ 161 FR 162 (324)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=87.56 E-value=1.3 Score=38.97 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=75.1
Q ss_pred CCceEEEEcCcccHHHHHHhhcCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCCCC-CCccceeEEcc-h--hh--
Q 017839 221 VIRLGIDVGGATGSFAARMKLYNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLPLF-DGVLDVVRCGH-A--VN-- 294 (365)
Q Consensus 221 ~iRi~LDIGCGtG~faa~Lae~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LPF~-D~SFDlV~s~~-~--L~-- 294 (365)
++|+ ||+=||.|.+..-|.+.|+.++. +.|.++...+..... ......+|...+... -..+|+++.+. | +.
T Consensus 11 ~lrv-~~lFsG~Gg~~~gl~~aG~~~v~-a~e~d~~a~~~~~~N-~~~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~a 87 (327)
T d2c7pa1 11 GLRF-IDLFAGLGGFRLALESCGAECVY-SNEWDKYAQEVYEMN-FGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSIS 87 (327)
T ss_dssp TCEE-EEETCTTTHHHHHHHHTTCEEEE-EECCCHHHHHHHHHH-HSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTT
T ss_pred CCeE-EEECccccHHHHHHHHCCCeEEE-EEeCCHHHHHHHHHH-CCCCCcCchhcCchhhcceeeeeecccccchhhhh
Confidence 4775 99999999999999888987764 455555554443322 111223554444322 13589999765 1 10
Q ss_pred ----cccCh-hhHHHHHHHHHhhhCCCC----------C--cchhhhhHHHHHHhhCCceeeEEeecCCC---C-CCCce
Q 017839 295 ----RWIPV-IMMEFLFYDVDRVLRGGG----------K--ASDLENVYGPLIGKLGYKKVKWATANKPN---S-KNGEV 353 (365)
Q Consensus 295 ----~w~d~-~~le~aL~Ei~RVLRPGG----------~--~~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~~~~ 353 (365)
...++ ..+=..+.++-+.+||.= . ....-+.+...++.+||. +.|.+..-.| + .+..+
T Consensus 88 g~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~-~~~~vl~a~~~GvPQ~R~R~ 166 (327)
T d2c7pa1 88 GKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYS-FHAKVLNALDYGIPQKRERI 166 (327)
T ss_dssp SCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBC-CEEEEEEGGGGTCSBCCEEE
T ss_pred hhhcCCcccchhHHHHHHHHHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCc-ceeeEecHHHcCCCchhhhh
Confidence 11121 122233444445577765 1 111123456788999997 4555544444 2 46668
Q ss_pred EEEEee
Q 017839 354 YLTALL 359 (365)
Q Consensus 354 y~sall 359 (365)
|+-|+.
T Consensus 167 fivg~r 172 (327)
T d2c7pa1 167 YMICFR 172 (327)
T ss_dssp EEEEEB
T ss_pred eeeeec
Confidence 877764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.45 E-value=0.37 Score=41.25 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=43.0
Q ss_pred CCCCccceeEEcch----hhcccCh----hhHHHHHHHHHhhhCCCC------C--------cchhhhhHHHHHHhhCCc
Q 017839 279 LFDGVLDVVRCGHA----VNRWIPV----IMMEFLFYDVDRVLRGGG------K--------ASDLENVYGPLIGKLGYK 336 (365)
Q Consensus 279 F~D~SFDlV~s~~~----L~~w~d~----~~le~aL~Ei~RVLRPGG------~--------~~~l~~~~~~~l~~~gfk 336 (365)
++|+|+|+|++.== ...|... +-+...+.|++||||||| . ..........+++..||.
T Consensus 19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (279)
T d1eg2a_ 19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKML 98 (279)
T ss_dssp SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCCE
T ss_pred CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhhHHHHHHhccCce
Confidence 45899999997642 2233211 234567899999999999 0 011122345677888988
Q ss_pred eeeEEeecCCC
Q 017839 337 KVKWATANKPN 347 (365)
Q Consensus 337 ~i~w~v~~K~d 347 (365)
...|.+-.|..
T Consensus 99 ~~~~i~~~k~~ 109 (279)
T d1eg2a_ 99 LANLIIWNYPN 109 (279)
T ss_dssp EEEEEEEECSC
T ss_pred eeeeeeecccc
Confidence 76666555544
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.10 E-value=1.9 Score=37.52 Aligned_cols=135 Identities=11% Similarity=0.114 Sum_probs=75.6
Q ss_pred CceEEEEcCcccHHHHHHhhcCC--eEEEeccCCChhHHHHHHHc-CCCcEEeccCCCCCC---CCCccceeEEcchhhc
Q 017839 222 IRLGIDVGGATGSFAARMKLYNI--TILTTTMNLGAPYSEAAALR-GLVPLHVPLQQRLPL---FDGVLDVVRCGHAVNR 295 (365)
Q Consensus 222 iRi~LDIGCGtG~faa~Lae~gv--~Vv~~~ldl~~~~~e~a~~R-g~v~~~~g~ae~LPF---~D~SFDlV~s~~~L~~ 295 (365)
+|+ +|+-||.|.+..-|...|+ +++. +.|.+....+..... +-..++.++...+.. +...+|+++.+.-=..
T Consensus 3 ~kv-~~lF~G~Gg~~~gl~~aG~~~~~~~-a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~ 80 (343)
T d1g55a_ 3 LRV-LELYSGVGGMHHALRESCIPAQVVA-AIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQP 80 (343)
T ss_dssp EEE-EEETCTTCHHHHHHHHHTCSEEEEE-EECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC---
T ss_pred CEE-EEcCcCccHHHHHHHHcCCCCeEEE-EEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeeccccc
Confidence 554 9999999998877766675 4432 234445444433332 334566677665542 2235899986652111
Q ss_pred cc-------ChhhHHHHHHHHHhhh-----CCCC---------CcchhhhhHHHHHHhhCCceeeEEeecCCC---C-CC
Q 017839 296 WI-------PVIMMEFLFYDVDRVL-----RGGG---------KASDLENVYGPLIGKLGYKKVKWATANKPN---S-KN 350 (365)
Q Consensus 296 w~-------d~~~le~aL~Ei~RVL-----RPGG---------~~~~l~~~~~~~l~~~gfk~i~w~v~~K~d---~-~~ 350 (365)
|. ..+....++.|+.|++ ||-= ......+.+...|+++||. +.|.+.+-.| + .+
T Consensus 81 fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~-v~~~vlna~dyGvPQ~R 159 (343)
T d1g55a_ 81 FTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQ-YQEFLLSPTSLGIPNSR 159 (343)
T ss_dssp ---------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEE-EEEEEECGGGGTCSCCC
T ss_pred ccccccccccccccccccchhhhhHhhhcCCCceeeeeccCCcccchhhHHHHhhhhccccc-cceeeeeccccCCcccc
Confidence 11 0011223556777765 4655 1111234567789999997 5676665544 2 57
Q ss_pred CceEEEEee
Q 017839 351 GEVYLTALL 359 (365)
Q Consensus 351 ~~~y~sall 359 (365)
..+|+-|..
T Consensus 160 ~Rvfivg~r 168 (343)
T d1g55a_ 160 LRYFLIAKL 168 (343)
T ss_dssp CEEEEEEEE
T ss_pred eeEEEEEEe
Confidence 778887753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=86.82 E-value=1.2 Score=35.52 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=48.9
Q ss_pred eEEEEcCc-ccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEeccCCCCC----------CCCCccceeEEcc
Q 017839 224 LGIDVGGA-TGSFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQRLP----------LFDGVLDVVRCGH 291 (365)
Q Consensus 224 i~LDIGCG-tG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~LP----------F~D~SFDlV~s~~ 291 (365)
.+|=+||| .|.++..+++ .|.+|+.++. +....+.+.+.|.-..+..+...-. ...+.+|+|+-.-
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~--~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~ 106 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTAR--SPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS 106 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEES--CHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECS
T ss_pred EEEEEcccccchhhHhhHhhhcccccccch--HHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecC
Confidence 34778987 5777777776 4888887554 4556677766664322222111000 0124578777322
Q ss_pred hhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 292 AVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 292 ~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
. . ...+.+..+.|||||
T Consensus 107 g-----~----~~~~~~a~~~~~~~G 123 (170)
T d1e3ja2 107 G-----N----EKCITIGINITRTGG 123 (170)
T ss_dssp C-----C----HHHHHHHHHHSCTTC
T ss_pred C-----C----hHHHHHHHHHHhcCC
Confidence 1 1 136778889999999
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=83.91 E-value=0.48 Score=39.90 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=50.8
Q ss_pred eEEEEcCcc-cHHHHHHhh-cCC-eEEEeccCCChhHHHHHHHcCCCcEEeccCCCC-----C-CCCCccceeEEcchhh
Q 017839 224 LGIDVGGAT-GSFAARMKL-YNI-TILTTTMNLGAPYSEAAALRGLVPLHVPLQQRL-----P-LFDGVLDVVRCGHAVN 294 (365)
Q Consensus 224 i~LDIGCGt-G~faa~Lae-~gv-~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae~L-----P-F~D~SFDlV~s~~~L~ 294 (365)
++|.+|||. |..++.+++ .|. .|+.++ .+....+++.+.|.-..+....+.+ - ....-+|+|+-.-...
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~~ 105 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFE 105 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCTT
T ss_pred EEEEECcCHHHHHHHHHHHhhcccceeeec--ccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcccc
Confidence 568999988 667777775 465 555544 3456677787777532222111111 0 1234577777322110
Q ss_pred -----cc-cChhhHHHHHHHHHhhhCCCC
Q 017839 295 -----RW-IPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 295 -----~w-~d~~~le~aL~Ei~RVLRPGG 317 (365)
++ .........+.+..+++||||
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~~r~gG 134 (195)
T d1kola2 106 ARGHGHEGAKHEAPATVLNSLMQVTRVAG 134 (195)
T ss_dssp CBCSSTTGGGSBCTTHHHHHHHHHEEEEE
T ss_pred ccCCcccceeecCcHHHHHHHHHHHhcCC
Confidence 00 000011258899999999999
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.88 E-value=0.42 Score=38.81 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=49.8
Q ss_pred eEEEEcCc-ccHHHHHHhh-cCCeEEEeccCCChhHHHHHHHcCCCcEEeccCC--CCCCCCCccceeEEcchhhcccCh
Q 017839 224 LGIDVGGA-TGSFAARMKL-YNITILTTTMNLGAPYSEAAALRGLVPLHVPLQQ--RLPLFDGVLDVVRCGHAVNRWIPV 299 (365)
Q Consensus 224 i~LDIGCG-tG~faa~Lae-~gv~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae--~LPF~D~SFDlV~s~~~L~~w~d~ 299 (365)
.+|-+|+| .|.++..+++ .|+.|+.++.+ ....+.+.+-|.-.++....+ ..--..+.||.|+..-.-.+-.
T Consensus 30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~--~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~-- 105 (168)
T d1piwa2 30 KVGIVGLGGIGSMGTLISKAMGAETYVISRS--SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI-- 105 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEEESS--STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC--
T ss_pred EEEEECCCCcchhHHHHhhhccccccccccc--hhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc--
Confidence 34779997 6888888875 48888765544 445666766674333332111 1111245789887533221111
Q ss_pred hhHHHHHHHHHhhhCCCC
Q 017839 300 IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 300 ~~le~aL~Ei~RVLRPGG 317 (365)
.+....++|||||
T Consensus 106 -----~~~~~~~~l~~~G 118 (168)
T d1piwa2 106 -----DFNIMPKAMKVGG 118 (168)
T ss_dssp -----CTTTGGGGEEEEE
T ss_pred -----hHHHHHHHhhccc
Confidence 2345789999999
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=82.38 E-value=1.1 Score=36.55 Aligned_cols=82 Identities=12% Similarity=0.070 Sum_probs=48.7
Q ss_pred eEEEEcCcc-cHHHHHHhhc-CC-eEEEeccCCChhHHHHHHHcCCCcEEeccCC----------CCCCCCCccceeEEc
Q 017839 224 LGIDVGGAT-GSFAARMKLY-NI-TILTTTMNLGAPYSEAAALRGLVPLHVPLQQ----------RLPLFDGVLDVVRCG 290 (365)
Q Consensus 224 i~LDIGCGt-G~faa~Lae~-gv-~Vv~~~ldl~~~~~e~a~~Rg~v~~~~g~ae----------~LPF~D~SFDlV~s~ 290 (365)
.+|-+|+|. |.++..+++. |+ .|+.++. ++...+.+.+-|--..+....+ ++. ....||+|+-.
T Consensus 31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~--~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~-~~~g~Dvvid~ 107 (182)
T d1vj0a2 31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAG--SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT-HGRGADFILEA 107 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTBSEEEEEES--CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT-TTSCEEEEEEC
T ss_pred EEEEECCCccchhheeccccccccccccccc--ccccccccccccceEEEeccccchHHHHHHHHHhh-CCCCceEEeec
Confidence 358889874 7888888764 76 6766544 3556677766664222211111 111 23458988743
Q ss_pred chhhcccChhhHHHHHHHHHhhhCCCC
Q 017839 291 HAVNRWIPVIMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 291 ~~L~~w~d~~~le~aL~Ei~RVLRPGG 317 (365)
-.- + ..+.+..+.|||||
T Consensus 108 vG~----~-----~~~~~a~~~l~~~G 125 (182)
T d1vj0a2 108 TGD----S-----RALLEGSELLRRGG 125 (182)
T ss_dssp SSC----T-----THHHHHHHHEEEEE
T ss_pred CCc----h-----hHHHHHHHHhcCCC
Confidence 211 1 25677889999999
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=81.60 E-value=1.4 Score=41.02 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=52.5
Q ss_pred eEEEEcCcccHHHHHHhhc----C-----------CeEEEeccCCChhHHHHHH----HcCC----CcEEeccCCCCCCC
Q 017839 224 LGIDVGGATGSFAARMKLY----N-----------ITILTTTMNLGAPYSEAAA----LRGL----VPLHVPLQQRLPLF 280 (365)
Q Consensus 224 i~LDIGCGtG~faa~Lae~----g-----------v~Vv~~~ldl~~~~~e~a~----~Rg~----v~~~~g~ae~LPF~ 280 (365)
.|+|-+||+|.|...+.++ + ..+.+.++| ......+. -+|. ..+..++.-. ...
T Consensus 165 ~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~--~~~~~la~~n~~l~g~~~~~~~i~~~d~l~-~~~ 241 (425)
T d2okca1 165 TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT--PLVVTLASMNLYLHGIGTDRSPIVCEDSLE-KEP 241 (425)
T ss_dssp CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC--HHHHHHHHHHHHHTTCCSSCCSEEECCTTT-SCC
T ss_pred eeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhcc--HHHHHHHHhhhhhcCCccccceeecCchhh-hhc
Confidence 4599999999998776553 1 235555554 22222221 1332 3455555432 235
Q ss_pred CCccceeEEcchhh-cccC-h------------hhHHHHHHHHHhhhCCCC
Q 017839 281 DGVLDVVRCGHAVN-RWIP-V------------IMMEFLFYDVDRVLRGGG 317 (365)
Q Consensus 281 D~SFDlV~s~~~L~-~w~d-~------------~~le~aL~Ei~RVLRPGG 317 (365)
...||+|+++=-+. .+.. . ..--..+.-+.+.|+|||
T Consensus 242 ~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G 292 (425)
T d2okca1 242 STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGG 292 (425)
T ss_dssp SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCC
Confidence 67899999976431 1110 0 011247888999999999
|