Citrus Sinensis ID: 017843

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MASLSPQTLLSISKPNKPNSKQLPSHACLLSKLSQNPNFSRNKQRKLNSWVVNSVVNEELDVLPVQSQDLTDMQEGVVVGREEDGELASQVSQVSGFSDGTLSFDGFSSASADERRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPAEVKPCLPDISPPEE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHcccccccccccHHHHcccccEEEEEccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHEEEEEEEcEEEEEEEEEcccccccccHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEcHHHHHHcccccccccEEEHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHHHHHHcEcEEEcccccccccccEEEEEEcccccccccEEEEcccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEccHHHEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
maslspqtllsiskpnkpnskqlpshacllsklsqnpnfsrnkqrklNSWVVNSVVNeeldvlpvqsqdltdmqegvvvgreedgelasqvsqvsgfsdgtlsfdgfssasaderrgNEEMERLIDRTINATIVLAVGTFAITKLLTIdqdywhgwTIFEIVryaplhnwTAYEEALKTNPVLAKMVISGVVYSLGdwiaqcfqgkplfefdrtrmFRSGLVGFTLHGSLSHYYYQFCEElfpfqdwwvvpakvafDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATfwpmltagwklwpfahlVTYGLVPVEQRLLWVDCVELIWVTILSTysnekseariaeapaevkpclpdisppee
Flexible Loop (DISEMBL)
maslspqtllsiskpnkpnsKQLPSHACLLSKLSQnpnfsrnkqrklNSWVVNSVVNEELDvlpvqsqdltdMQEGVVVGREEDGELASQVSQVSGFSDGTLSFDGfssasaderrgNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILStysnekseariaeapaevkpclpdisppee
Low Complexity Region (SEG)
MASLSPQTLLSISKPNKPNSKQLPSHACLLSKLSQNPNFSRNKQRKLnswvvnsvvnEELDVLPVQSQDLTDMQegvvvgreedgeLASQVSQVSGFSDGTLSFDGFSSASADERRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPAEVKPCLPDISPPEE
Disordered region (IsUnstruct)
**********************************************LNSWVVNSVVNEELDVLPV**********************************************************LIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTY****************************
Disordered Region (DISOPRED)
*************************************************WVVNSVVNEELDV***************************************************************DRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILS******************************
Disordered Region (DISEMBL)
MASLSPQTLLSISKPNKPNSKQLPSHACLLSKLSQNPNFSRNKQRKLNSWVVNSVVNEELDVLPVQSQDLTDMQEGVVVGREEDGELASQVSQVSGFSDGTLSFDGFSSASADERRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPAEVKPCLPDISPPEE
Disordered Region (DISPRO)
***************************CLLSKLSQNPNFSRNKQRKLNSWVVNSVVNEELDVLPVQSQDLT**QEGVVVGREEDGELASQVSQVSG**DGTL*F*************NEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNE*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLSPQTLLSISKPNKPNSKQLPSHACLLSKLSQNPNFSRNKQRKLNSWVVNSVVNEELDVLPVQSQDLTDMQEGVVVGREEDGELASQVSQVSGFSDGTLSFDGFSSASADERRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPAEVKPCLPDISPPEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q2KIY1	196	Peroxisomal membrane prot	yes	no	0.468	0.872	0.261	3e-15
Q754F0	182	Protein SYM1 OS=Ashbya go	yes	no	0.468	0.939	0.306	8e-15
Q6CIY7	195	Protein SYM1 OS=Kluyverom	yes	no	0.452	0.846	0.286	1e-14
Q6CAW5	202	Protein SYM1 OS=Yarrowia	yes	no	0.449	0.811	0.295	2e-14
Q07066	194	Peroxisomal membrane prot	yes	no	0.479	0.902	0.264	1e-12
Q68F62	203	Mpv17-like protein OS=Xen	N/A	no	0.484	0.871	0.273	2e-12
Q99MS3	194	Mpv17-like protein OS=Mus	yes	no	0.468	0.881	0.276	7e-12
Q7SCY7	172	Protein sym-1 OS=Neurospo	N/A	no	0.438	0.930	0.265	2e-11
Q4P9K6	199	Protein SYM1 OS=Ustilago	N/A	no	0.460	0.844	0.289	3e-11
Q54GD8	184	PXMP2/4 family protein 3	yes	no	0.435	0.864	0.288	3e-11

>sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 5/176 (2%)

Query: 166 PLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFE-----FDRTRMFRSG 220
           P    + Y   L+  PVL K   SG++ +LG+++AQ  + K   E      D +   R  
Sbjct: 18  PRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYA 77

Query: 221 LVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLES 280
           + GF   G L H++Y   E   P +       ++  D+  +A A+ S++++V+  L  + 
Sbjct: 78  IYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFLEGQD 137

Query: 281 PFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILST 336
             +  +++K+ FWP L   W++W     +    +PV+ R+L+ + V L W   L++
Sbjct: 138 TAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYLAS 193

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.
Bos taurus (taxid: 9913)

>sp|Q754F0|SYM1_ASHGO Protein SYM1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SYM1 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 5/176 (2%)

Query: 173 YEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSH 232
           Y+ +L+++P     + +G ++ LGD +AQ    +P   +D  R  R  L G  L   +  
Sbjct: 8   YKASLQSHPKRTNALTTGFLFGLGDIVAQTQFPEPGASYDPMRTLRPFLYGAVLFSLVGD 67

Query: 233 YYYQFCEEL----FPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSEL 288
            +Y+F   +     P   W  V A+VA DQ  +A     +YY  + L+   S   +   L
Sbjct: 68  KWYRFLSTVRLGRLPQAHWANVLARVACDQLIFAPIGVPLYYTAMALMEGGSLEDVRIRL 127

Query: 289 KATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEA 344
              +W  L A W +WP   L  + LVPV+ RLL V+ + + W T LS YSN  + +
Sbjct: 128 SEKWWSTLLANWIVWPAFQLCNFSLVPVQHRLLTVNVLSIFWNTYLS-YSNSTASS 182

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6CIY7|SYM1_KLULA Protein SYM1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SYM1 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 6/171 (3%)

Query: 169 NWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQC-FQGKPLFEFDRTRMFRSGLVGFTLH 227
           NW  Y  ++K +P L   +++G ++ +GD IAQ  F  K   ++D  R  R+ + G  + 
Sbjct: 6   NW--YTASVKRSPRLTNGIMTGSLFGIGDVIAQVGFPEKKGQKYDLARTVRAVVYGSLIF 63

Query: 228 GSLSHYYYQFCEE---LFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSI 284
             +   +Y+F  +   + P + W    A+V  DQ  +A     +YY V+ +L  +S    
Sbjct: 64  SIIGDSWYKFLNQKVIVKPGKHWTNTAARVGCDQLLFAPVGIPMYYGVMSILEGKSLVDA 123

Query: 285 FSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILS 335
             +++  +WP L   W +WP   L+ + LVPV  RL  V+ + + W   LS
Sbjct: 124 KKKIEDNWWPTLVTNWYVWPAFQLINFSLVPVHHRLFSVNIISIFWNAFLS 174

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6CAW5|SYM1_YARLI Protein SYM1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SYM1 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 169 NWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQ-CFQGKPLFEFDRTRMFRSGLVGFTLH 227
           NW  Y   L+  P    +  +  ++ +GD ++Q  F  KP   ++  R  R+G+      
Sbjct: 2   NW--YVRLLQKYPYRMAVTSTSSLFMIGDCVSQRYFSDKP---YEPMRTARAGIYACAFA 56

Query: 228 GSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSE 287
            +++ ++    ++  P      V AKVA DQ  +A +    Y+ V+GLL  +SP +I+  
Sbjct: 57  PAMTAWFRFLGQQQLP------VIAKVAIDQAVFAPSSIGYYFSVMGLLEGKSPDTIWQS 110

Query: 288 LKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSE 343
           LK  +W  L  GW +WP   L  +G+VP   R+L  +C  L+W T L+  +  K E
Sbjct: 111 LKNQYWDTLKCGWMIWPAFQLFNFGIVPPNFRVLASNCCGLVWNTFLAYQNANKME 166

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 162 VRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCF---QGKPLFEFDRTRMFR 218
           +R  P      Y   LK  PV+ K V SG++ +LG+ +AQ     Q K     + + + R
Sbjct: 14  LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query: 219 SGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRL 278
             + G  + G LSHY Y F E   P +  W    ++  D+  +A  +  +++ V+ LL  
Sbjct: 74  YLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLLEG 133

Query: 279 ESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILST 336
           ++     +++++ FWP L   W++W     +    VP++ R+L+ +   L W   L++
Sbjct: 134 KNISVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLAS 191

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q68F62|MP17L_XENLA Mpv17-like protein OS=Xenopus laevis GN=mpv17l PE=2 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 6/183 (3%)

Query: 178 KTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQF 237
           K +P L  + I G +++  D + Q     P    D  +  + GLVGF  H + + ++ +F
Sbjct: 9   KRHPWLTNVTIYGSLFASADIVQQKLSKSPTEPIDFKQTAKVGLVGFCFHANFNFFWLRF 68

Query: 238 CEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLT 297
            E  FP      V  KVA DQ   A    S +Y  L LL  E    +F  LK  FWP   
Sbjct: 69  IERTFPGSAPLNVIRKVACDQLMAAPITISAFYTGLSLLDGER--DVFKNLKEKFWPTYK 126

Query: 298 AGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPAEVKPCL 357
            G   W     + + ++P   R  ++     +W T L    N      I E    +   +
Sbjct: 127 TGVMCWTVFQTINFSVIPPFVRTAYIGVCAFLWTTFLCYIRNRD----INEVTTRLLHAV 182

Query: 358 PDI 360
           P+I
Sbjct: 183 PNI 185

Participates in reactive oxygen species metablism.

Xenopus laevis (taxid: 8355)

>sp|Q99MS3|MP17L_MOUSE Mpv17-like protein OS=Mus musculus GN=Mpv17l PE=1 SV=2

 Score = 72.0 bits (175), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 6/177 (3%)

Query: 170 WTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGS 229
           W A+ +A +  P    +++   ++S GD + Q  +G P  ++ +TR  R   +  T HG+
Sbjct: 5   WRAFPQAARRYPWPTNVLLYAGLFSAGDALQQRLRGGPA-DWRQTR--RVATLAVTFHGN 61

Query: 230 LSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELK 289
            ++ + +  E   P +    V AKV  DQT       S +Y+  G+  L+    IF +LK
Sbjct: 62  FNYVWLRLLERALPGRAPRTVLAKVLCDQTVGGPIALSAFYV--GMSVLQGKDDIFLDLK 119

Query: 290 ATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARI 346
             FW    +G   WPF  L  + LVPV  R  +      +W T L  +S +  +  +
Sbjct: 120 QKFWNTYKSGLMYWPFVQLTNFSLVPVHWRTAYTGLCAFLWATFLC-FSQQSGDGTL 175

Isoform 1 and isoform 3 participate in reactive oxygen species metablism by up- or down-regulation of the genes of antioxidant enzymes.

Mus musculus (taxid: 10090)

>sp|Q7SCY7|SYM1_NEUCR Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 173 YEEALKTNPVLAKMVISGVVYSLGDWIAQ-CFQGKPLFEFDRTRMFRSGLVGFTLHGSLS 231
           Y+  L   P+L + V + +++ +GD  AQ     + L   D TR  R  L G  + G  +
Sbjct: 5   YKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVFGPAA 64

Query: 232 HYYYQFCEE--LFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELK 289
             +++F ++  + P      + A+VA DQ  +A  +  I+   LG + +     +  +L+
Sbjct: 65  TTWFRFLQKRVVVPGSTNKTILARVAADQGLFAPTFIGIF---LGSMAVLEGTDVKEKLQ 121

Query: 290 ATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILS 335
             +W  L+  W +WPF  +V + +VP++ R+L+V+ + + W   LS
Sbjct: 122 KNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNVISIGWNCYLS 167

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q4P9K6|SYM1_USTMA Protein SYM1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SYM1 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 8/176 (4%)

Query: 185 KMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPF 244
           + +  GV+++ GD IAQ    K     D  R FR  L G  +   L+  ++    E   F
Sbjct: 18  QCLTGGVLFATGDTIAQQLVEKRGSRHDLARTFRLSLYGGCVFSPLASIWFGRVLERVRF 77

Query: 245 QDWWV-VPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLW 303
                 +  KVA DQ   + A+ ++++    ++   SP    +++   +WP L   W LW
Sbjct: 78  SSKAANIATKVALDQAIASPAFVALFFGATTIMEGGSPDQAKNKIIHNWWPTLKTAWGLW 137

Query: 304 PFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPAEVKPCLPD 359
                +   LVP  QRLL+V+ V + W T LS  S   S+         VKP L D
Sbjct: 138 IPVQTLNMALVPPSQRLLFVNVVSIFWNTFLSIKSAAASD-------HAVKPNLND 186

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 21/180 (11%)

Query: 171 TAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSL 230
           T Y + LK+ P+  K + S  +  +   +AQ F        ++ ++  + +V FT+ G +
Sbjct: 15  TWYMKKLKSKPIQTKALTSATLSFISSVVAQKF-------IEKKKINWNAVVKFTVWGLI 67

Query: 231 S----HYYYQFCEELFP-----FQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESP 281
           S    HY++   + LF      +Q W     K+  DQ  +A   N  +Y VL +L    P
Sbjct: 68  SSPLVHYWHIILDRLFKNIKDKYQSW----GKLIVDQLVFAPFINIAFYSVLAILD-GKP 122

Query: 282 FSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEK 341
            SI  +L    +P L A WK+WP A L+ +  VP   R+L+ + V   W   LS  + +K
Sbjct: 123 KSILFKLYFDLFPTLKASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILATKK 182

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
118488904	369	unknown [Populus trichocarpa x Populus d	0.953	0.943	0.733	1e-147
225461355	371	PREDICTED: uncharacterized protein LOC10	0.969	0.954	0.690	1e-136
30695366	366	Peroxisomal membrane 22 kDa (Mpv17/PMP22	0.909	0.907	0.671	1e-136
449463132	376	PREDICTED: uncharacterized protein LOC10	0.939	0.912	0.683	1e-136
356549763	376	PREDICTED: uncharacterized protein LOC10	0.978	0.949	0.669	1e-136
356542260	375	PREDICTED: uncharacterized protein LOC10	0.975	0.949	0.664	1e-134
297847674	360	hypothetical protein ARALYDRAFT_474411 [	0.884	0.897	0.679	1e-132
224117242	240	predicted protein [Populus trichocarpa]	0.638	0.970	0.884	1e-122
302143057	262	unnamed protein product [Vitis vinifera]	0.712	0.992	0.793	1e-122
224128402	238	predicted protein [Populus trichocarpa]	0.638	0.978	0.875	1e-121

>gi|118488904|gb|ABK96261.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/360 (73%), Positives = 295/360 (81%), Gaps = 12/360 (3%)

Query: 1   MASLSPQTLLSISKPNKPNSKQLPSHACLLSKLSQNPNFSRNKQRKLNSWVVNSVVNEEL 60
           + ++SP  LLS+SK  K  SK L +   L  KL ++  F RNKQ    SW +NSVV EEL
Sbjct: 4   LHAISPHGLLSLSKTKKTISKSLQNPQFLSPKLPKSQTFCRNKQ----SWHLNSVVQEEL 59

Query: 61  DVLPVQSQDLTDMQEGVV-VGREEDG-ELASQVSQVSGFSDGTLSFDGFSSASADERRG- 117
           DV+PVQS D  D QEG++ +  E +G ELA+QVS   G SDG  SF+GFSSAS+    G 
Sbjct: 60  DVIPVQSGDSVDQQEGMLAIPVEREGTELAAQVSGFGG-SDGQFSFEGFSSASSSGIDGE 118

Query: 118 ----NEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAY 173
                 E ERLIDRTINA IVL  GT+AITKLLTID +YWHGWT+FEI+RYAP HNW+AY
Sbjct: 119 SIDRQSESERLIDRTINAMIVLGAGTYAITKLLTIDHNYWHGWTLFEILRYAPQHNWSAY 178

Query: 174 EEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHY 233
           EEALKTNPVLAKM+ISG+VYSLGDWIAQC++GKPLFE+DRTRMFRSGLVGFTLHGSLSHY
Sbjct: 179 EEALKTNPVLAKMMISGIVYSLGDWIAQCYEGKPLFEYDRTRMFRSGLVGFTLHGSLSHY 238

Query: 234 YYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFW 293
           YYQFCEELFPFQDWWVVPAKVAFDQT WAAAWNSIY+  LG LRLESP SIFSEL ATFW
Sbjct: 239 YYQFCEELFPFQDWWVVPAKVAFDQTLWAAAWNSIYFTALGFLRLESPASIFSELTATFW 298

Query: 294 PMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPAEV 353
           PMLTAGWKLWPFAHL+TYG++PVEQRLLWVDCVELIWVTILSTYSNEKSEARI+EA  E 
Sbjct: 299 PMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSNEKSEARISEAAVEA 358

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461355|ref|XP_002284644.1| PREDICTED: uncharacterized protein LOC100253839 [Vitis vinifera]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 256/371 (69%), Positives = 289/371 (77%), Gaps = 17/371 (4%)

Query: 7   QTLLSISKP-NKPNSKQLPSHACLLSKLSQNPNFSRNKQRKLNSWVVNSVVNEELDVLPV 65
           Q  L I+KP  +P SK  P+   L   L Q         RK   WVV   V EELDV+PV
Sbjct: 6   QRFLPITKPFTEPKSKPRPT-IFLPKGLPQTSGIFSGTNRK--RWVV--AVAEELDVIPV 60

Query: 66  QSQDLTDMQEGVV--VGREEDGELASQVSQVSG---FS-DGTLSFDGFSSASAD----ER 115
           QS D TD Q+GV+  +  EE+GEL +QV   SG   FS +G   F GFSS+S+     E 
Sbjct: 61  QSSDSTDQQDGVLARIEVEEEGELVNQVGGFSGEGRFSFEGAGEFQGFSSSSSSSTSSEG 120

Query: 116 RGN-EEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYE 174
           +G  E++ERLIDR+INATIVLA G+FA+TKLLTID DYWHGWTIFEI+RYAP HNW+AYE
Sbjct: 121 QGEAEDVERLIDRSINATIVLAAGSFAVTKLLTIDADYWHGWTIFEILRYAPQHNWSAYE 180

Query: 175 EALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYY 234
           EALKTNPV AKMVISGVVYSLGDWIAQC++GKPLFEFDR RM RSGLVGFTLHGSLSHYY
Sbjct: 181 EALKTNPVFAKMVISGVVYSLGDWIAQCYEGKPLFEFDRARMLRSGLVGFTLHGSLSHYY 240

Query: 235 YQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWP 294
           YQFCE LFPFQDWWVVPAKVAFDQT WAA WNSIYY V+G LR +SP ++F EL+ATFWP
Sbjct: 241 YQFCEALFPFQDWWVVPAKVAFDQTLWAAVWNSIYYTVVGFLRFDSPANVFGELRATFWP 300

Query: 295 MLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPAEVK 354
           MLTAGWKLWPFAHL+TYG++PVEQRLLWVDCVELIWVTILSTYSNEKSEAR++EA AE  
Sbjct: 301 MLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSNEKSEARVSEASAEAA 360

Query: 355 PCLPDISPPEE 365
              P    PE+
Sbjct: 361 SNSPPTGSPEK 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695366|ref|NP_564615.3| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana] gi|12324641|gb|AAG52277.1|AC019018_14 unknown protein; 54928-56750 [Arabidopsis thaliana] gi|14326545|gb|AAK60317.1|AF385726_1 At1g52870/F14G24_14 [Arabidopsis thaliana] gi|25090145|gb|AAN72239.1| At1g52870/F14G24_14 [Arabidopsis thaliana] gi|332194741|gb|AEE32862.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/362 (67%), Positives = 282/362 (77%), Gaps = 30/362 (8%)

Query: 3   SLSPQTLLSISKPN-KPNSKQLPSHACLLSKLSQNPNFSRNKQRKLNSWVVNSVVNEELD 61
           S+SP++ L +SKP+ KP+  Q+                 RNKQR     V  +++ +E+D
Sbjct: 9   SISPRSFLPLSKPSLKPHRSQI---------------LLRNKQRNC---VSCALIRDEID 50

Query: 62  VLPVQSQDLTDMQEGVVVGREEDGELASQVSQVSGFS----DGTLSFDGFSSASA----- 112
           ++PVQS+D TD +EG VV    +  +    S V GFS    +G LS +GF S+S+     
Sbjct: 51  LIPVQSRDRTDHEEGSVVVMSTETAVDGNESVVVGFSAATSEGQLSLEGFPSSSSSGADL 110

Query: 113 --DERRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNW 170
             ++RR NEEME++IDRTINATIVLA G++AITKLLTID DYWHGWT+FEI+RYAP HNW
Sbjct: 111 GDEKRRENEEMEKMIDRTINATIVLAAGSYAITKLLTIDHDYWHGWTLFEILRYAPQHNW 170

Query: 171 TAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSL 230
            AYEEALK NPVLAKMVISGVVYS+GDWIAQC++GKPLFE DR R  RSGLVGFTLHGSL
Sbjct: 171 IAYEEALKQNPVLAKMVISGVVYSVGDWIAQCYEGKPLFEIDRARTLRSGLVGFTLHGSL 230

Query: 231 SHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKA 290
           SH+YYQFCEELFPFQDWWVVP KVAFDQT W+A WNSIY+ VLG LR ESP SIF ELKA
Sbjct: 231 SHFYYQFCEELFPFQDWWVVPVKVAFDQTVWSAIWNSIYFTVLGFLRFESPISIFKELKA 290

Query: 291 TFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAP 350
           TF PMLTAGWKLWPFAHL+TYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARI+E+ 
Sbjct: 291 TFLPMLTAGWKLWPFAHLITYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARISESV 350

Query: 351 AE 352
            E
Sbjct: 351 IE 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463132|ref|XP_004149288.1| PREDICTED: uncharacterized protein LOC101205134 [Cucumis sativus] gi|449528619|ref|XP_004171301.1| PREDICTED: uncharacterized protein LOC101228605 [Cucumis sativus]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/363 (68%), Positives = 281/363 (77%), Gaps = 20/363 (5%)

Query: 6   PQTLLSISKPNKPNSKQLPS-----HACLLSKLSQNPNFSRNKQRKLNSWVVNSVVNEEL 60
           P T  S +   +  +   P      HA  L + S      RN     ++W +NS V EE 
Sbjct: 9   PHTFTSFTTAKRAPAPSPPRAFINFHAPKLPERSIFSTIGRN-----SNWALNSAV-EEF 62

Query: 61  DVLPVQSQDLTDMQEGVVVGR-EEDGELASQVSQVSGFSD----GTLSFDGFSS-ASADE 114
           DV+PVQS D TD QEGV +GR E DG      + V GF +    G     GFSS AS  +
Sbjct: 63  DVIPVQSSDFTDQQEGVALGRAERDGAEGEMGTAVGGFGELSLGGAGEIQGFSSSASVAD 122

Query: 115 RRGNE--EMER-LIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWT 171
             G E  EMER +IDR INATIVLA G++A+TKLLTIDQDYWHGWT++EI+RYAP HNW+
Sbjct: 123 GGGTETGEMERVMIDRIINATIVLAAGSYALTKLLTIDQDYWHGWTLYEILRYAPQHNWS 182

Query: 172 AYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLS 231
           AYEEALKT+PVLAKMVISGVVYSLGDWIAQCF+GKPLFEFDRTRMFRSGLVGF+LHGSLS
Sbjct: 183 AYEEALKTHPVLAKMVISGVVYSLGDWIAQCFEGKPLFEFDRTRMFRSGLVGFSLHGSLS 242

Query: 232 HYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKAT 291
           HYYY FCE LFPFQDWWVVPAKVAFDQTAW+A WNSIY++VLG LRLESP SIF+ELKAT
Sbjct: 243 HYYYHFCEGLFPFQDWWVVPAKVAFDQTAWSAVWNSIYFVVLGFLRLESPVSIFNELKAT 302

Query: 292 FWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPA 351
           FWPMLTAGWKLWPFAHL+TYG++PVEQRLLWVDCVELIWVTILSTYSNEKSEARI+E   
Sbjct: 303 FWPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSNEKSEARISEVAT 362

Query: 352 EVK 354
           ++ 
Sbjct: 363 DLS 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549763|ref|XP_003543260.1| PREDICTED: uncharacterized protein LOC100786706 [Glycine max]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/378 (66%), Positives = 303/378 (80%), Gaps = 21/378 (5%)

Query: 2   ASLSPQTLL-SISKPNKP--NSKQLPSHACLLSKLSQNPNFSRNKQRKLNSWVVNSVVNE 58
           ++++P+T L SI KP  P   +K + S A    +LS N   S NK+    +  VNS  +E
Sbjct: 6   STVAPRTFLPSIPKPRAPLHAAKSVASAARNFPRLSHNLILSGNKR----AVAVNSA-SE 60

Query: 59  ELDVLPVQSQDLTDMQEGVVVGREE----DGELASQVSQVSGFSDGTLSFDGFSSASADE 114
           E DV+ VQS+D+TD QEGVVV R E    DGELA+QVS+  G ++G LS +GFSS+S+  
Sbjct: 61  EFDVISVQSEDITDQQEGVVVSRVEMEGGDGELATQVSRF-GANEGLLSLEGFSSSSSPS 119

Query: 115 RRGNE-----EMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHN 169
                     +ME+LIDRTINATIVLA GTFA+TKLLTID DYWHGWT++EI+RYAP HN
Sbjct: 120 SSSLIGSESVDMEKLIDRTINATIVLAAGTFAVTKLLTIDSDYWHGWTLYEILRYAPQHN 179

Query: 170 WTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGS 229
           W+AYEEALKTNPVLAKM+ISG+VYSLGDWIAQC +GKPLFEFDR RMFRSGLVGFTLHGS
Sbjct: 180 WSAYEEALKTNPVLAKMMISGIVYSLGDWIAQCVEGKPLFEFDRARMFRSGLVGFTLHGS 239

Query: 230 LSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELK 289
           LSH+YYQFCEELFP+++WWVVPAKVAFDQTAW+A WNSIYY V+ LLRL+ P SI +ELK
Sbjct: 240 LSHFYYQFCEELFPYKEWWVVPAKVAFDQTAWSALWNSIYYTVVALLRLDPPMSILNELK 299

Query: 290 ATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEA 349
           ATF+PMLTAGWKLWPFAHL+TYG++PVEQRLLWVD +ELIWVTILST+SNEKSEAR +++
Sbjct: 300 ATFFPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDTIELIWVTILSTFSNEKSEARNSQS 359

Query: 350 --PAEVKPCLPDISPPEE 365
             P+EVK     + PPEE
Sbjct: 360 MVPSEVKSTT-YVHPPEE 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542260|ref|XP_003539587.1| PREDICTED: uncharacterized protein LOC100805057 [Glycine max]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/378 (66%), Positives = 300/378 (79%), Gaps = 22/378 (5%)

Query: 2   ASLSPQTLL-SISKPNKP--NSKQLPSHACLLSKLSQNPNFSRNKQRKLNSWVVNSVVNE 58
           ++++P+T L SI KP  P   +K +   A    +LS+N   S NK+      V  +   E
Sbjct: 6   STVAPRTFLPSIPKPRAPLHAAKFVAGGAHNFRRLSRNLILSGNKRA-----VAANSAAE 60

Query: 59  ELDVLPVQSQDLTDMQEGVVVGREE----DGELASQVSQVSGFSDGTLSFDGFSSASADE 114
           E DV+ VQS D+TD QEGVVV R E    D ELA+QVS   G ++G LS +GFSS+S+  
Sbjct: 61  EFDVISVQSDDITDQQEGVVVSRVEMEGGDCELATQVSGF-GANEGLLSLEGFSSSSSSS 119

Query: 115 RR--GNE---EMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHN 169
               GNE   +ME+LIDRTINATIVLA GTFA+TKLLTID DYWHGWT++EI+RYAP HN
Sbjct: 120 SSLVGNESEEDMEKLIDRTINATIVLAAGTFAVTKLLTIDSDYWHGWTLYEILRYAPQHN 179

Query: 170 WTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGS 229
           W+AYEEALKTNPVLAKM+ISG+VYS+GDWIAQCF+GKPLFEFDR RMFRSGLVGFTLHGS
Sbjct: 180 WSAYEEALKTNPVLAKMMISGIVYSIGDWIAQCFEGKPLFEFDRARMFRSGLVGFTLHGS 239

Query: 230 LSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELK 289
           LSH+YYQFCEELFP+++WWVVPAKVAFDQTAW+A WNSIYY V+ LLR + P SI +ELK
Sbjct: 240 LSHFYYQFCEELFPYKEWWVVPAKVAFDQTAWSALWNSIYYTVVALLRRDPPMSILNELK 299

Query: 290 ATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEA 349
           ATF+PMLTAGWKLWPFAHL+TYG++PVEQRLLWVD +ELIWVTILST+SNEKSEAR +++
Sbjct: 300 ATFFPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDTIELIWVTILSTFSNEKSEARNSQS 359

Query: 350 --PAEVKPCLPDISPPEE 365
             P+EVK     + PPEE
Sbjct: 360 MVPSEVKST--SVYPPEE 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847674|ref|XP_002891718.1| hypothetical protein ARALYDRAFT_474411 [Arabidopsis lyrata subsp. lyrata] gi|297337560|gb|EFH67977.1| hypothetical protein ARALYDRAFT_474411 [Arabidopsis lyrata subsp. lyrata]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/353 (67%), Positives = 273/353 (77%), Gaps = 30/353 (8%)

Query: 3   SLSPQTLLSISKPN-KPNSKQLPSHACLLSKLSQNPNFSRNKQRKLNSWVVNSVVNEELD 61
           S+SP++ L +SKP+ KP+  Q+               F RNKQR        +++ +E+D
Sbjct: 9   SISPRSFLPLSKPSLKPHRSQI---------------FLRNKQRTC------ALIRDEID 47

Query: 62  VLPVQSQDLTDMQEGVVVGREEDGELASQVSQVSGFS----DGTLSFDGFSSASAD---E 114
           V+PVQS+D TD +EG VV    + E     S V GFS    +G LS +GF S+  D   E
Sbjct: 48  VIPVQSRDRTDHEEGSVVVMSTETERDVNESVVVGFSAATSEGQLSLEGFPSSGGDLGDE 107

Query: 115 RRG-NEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAY 173
           +RG NEE E++IDRTINATIVLA G++AITKLLTID DYWH WT+ EI+RYAP HNW AY
Sbjct: 108 KRGENEEREKMIDRTINATIVLAAGSYAITKLLTIDHDYWHVWTLLEILRYAPQHNWIAY 167

Query: 174 EEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHY 233
           EEALK NPVLAKMVISGVVYS+GDWIAQC++GKPLFE DR R  RSGLVGFTLHGSLSH+
Sbjct: 168 EEALKQNPVLAKMVISGVVYSVGDWIAQCYEGKPLFEIDRARTLRSGLVGFTLHGSLSHF 227

Query: 234 YYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFW 293
           YYQFCEELFPFQDWWVVP KV FDQT W+A WNSIY+ VLG LR ESP SIF ELKATF 
Sbjct: 228 YYQFCEELFPFQDWWVVPVKVVFDQTVWSAIWNSIYFTVLGFLRFESPLSIFKELKATFL 287

Query: 294 PMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARI 346
           PMLTAGWKLWPFAHL+TYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARI
Sbjct: 288 PMLTAGWKLWPFAHLITYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARI 340

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117242|ref|XP_002317517.1| predicted protein [Populus trichocarpa] gi|222860582|gb|EEE98129.1| predicted protein [Populus trichocarpa]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/233 (88%), Positives = 221/233 (94%)

Query: 120 EMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKT 179
           E +RLIDRTINATIVLA GT+AITKLLTID DYWHGWT+FEI+RYAP HNW+AYEEALKT
Sbjct: 1   ESDRLIDRTINATIVLAAGTYAITKLLTIDHDYWHGWTLFEILRYAPQHNWSAYEEALKT 60

Query: 180 NPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCE 239
           NPVLAKM+ISGVVYS+GDWIAQC++GKP+FEFDRTRMFRSG+VGFTLHGSLSHYYYQFCE
Sbjct: 61  NPVLAKMMISGVVYSVGDWIAQCYEGKPIFEFDRTRMFRSGVVGFTLHGSLSHYYYQFCE 120

Query: 240 ELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAG 299
           ELFPFQDWWVVP KVAFDQT WAAAWNSIY+ VLG LRLESP SIFSEL ATFWPMLTAG
Sbjct: 121 ELFPFQDWWVVPVKVAFDQTLWAAAWNSIYFTVLGFLRLESPASIFSELTATFWPMLTAG 180

Query: 300 WKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPAE 352
           WKLWPFAHL+TYG+VPVEQRLLWVDCVELIWVTILSTYSNEKSEARI+EA  E
Sbjct: 181 WKLWPFAHLITYGVVPVEQRLLWVDCVELIWVTILSTYSNEKSEARISEATVE 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143057|emb|CBI20352.3| unnamed protein product [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/261 (79%), Positives = 229/261 (87%), Gaps = 1/261 (0%)

Query: 106 GFSSASADERRGN-EEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRY 164
           GF    + E +G  E++ERLIDR+INATIVLA G+FA+TKLLTID DYWHGWTIFEI+RY
Sbjct: 2   GFWRELSSEGQGEAEDVERLIDRSINATIVLAAGSFAVTKLLTIDADYWHGWTIFEILRY 61

Query: 165 APLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGF 224
           AP HNW+AYEEALKTNPV AKMVISGVVYSLGDWIAQC++GKPLFEFDR RM RSGLVGF
Sbjct: 62  APQHNWSAYEEALKTNPVFAKMVISGVVYSLGDWIAQCYEGKPLFEFDRARMLRSGLVGF 121

Query: 225 TLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSI 284
           TLHGSLSHYYYQFCE LFPFQDWWVVPAKVAFDQT WAA WNSIYY V+G LR +SP ++
Sbjct: 122 TLHGSLSHYYYQFCEALFPFQDWWVVPAKVAFDQTLWAAVWNSIYYTVVGFLRFDSPANV 181

Query: 285 FSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEA 344
           F EL+ATFWPMLTAGWKLWPFAHL+TYG++PVEQRLLWVDCVELIWVTILSTYSNEKSEA
Sbjct: 182 FGELRATFWPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSNEKSEA 241

Query: 345 RIAEAPAEVKPCLPDISPPEE 365
           R++EA AE     P    PE+
Sbjct: 242 RVSEASAEAASNSPPTGSPEK 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128402|ref|XP_002329153.1| predicted protein [Populus trichocarpa] gi|222869822|gb|EEF06953.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/233 (87%), Positives = 219/233 (93%)

Query: 120 EMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKT 179
           E ERLIDRTINA IVL  GT+AITKLLTID +YWHGWT+FEI+RYAP HNW+AYEEALKT
Sbjct: 1   ESERLIDRTINAMIVLGAGTYAITKLLTIDHNYWHGWTLFEILRYAPQHNWSAYEEALKT 60

Query: 180 NPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCE 239
           NPVLAKM+ISG+VYSLGDWIAQC++GKPLFE+DRTRMFRSGLVGFTLHGSLSHYYYQFCE
Sbjct: 61  NPVLAKMMISGIVYSLGDWIAQCYEGKPLFEYDRTRMFRSGLVGFTLHGSLSHYYYQFCE 120

Query: 240 ELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAG 299
           ELFPFQDWWVVPAKVAFDQT WAAAWNSIY+  LG LRLESP SIFSEL ATFWPMLTAG
Sbjct: 121 ELFPFQDWWVVPAKVAFDQTLWAAAWNSIYFTALGFLRLESPASIFSELTATFWPMLTAG 180

Query: 300 WKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAPAE 352
           WKLWPFAHL+TYG++PVEQRLLWVDCVELIWVTILSTYSNEKSEARI+EA  E
Sbjct: 181 WKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSNEKSEARISEAAVE 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2011496	366	AT1G52870 "AT1G52870" [Arabido	0.945	0.942	0.651	1.7e-123
TAIR|locus:2128731	361	AT4G03410 "AT4G03410" [Arabido	0.630	0.637	0.791	9.5e-105
UNIPROTKB|Q2KIY1	196	PXMP2 "Peroxisomal membrane pr	0.468	0.872	0.261	5.4e-17
MGI|MGI:107487	194	Pxmp2 "peroxisomal membrane pr	0.435	0.819	0.280	7.8e-16
RGD|61812	194	Pxmp2 "peroxisomal membrane pr	0.471	0.886	0.276	1e-15
UNIPROTKB|G3V9N2	194	Pxmp2 "Peroxisomal membrane pr	0.430	0.809	0.283	1.7e-15
ZFIN|ZDB-GENE-040912-184	194	zgc:92599 "zgc:92599" [Danio r	0.446	0.840	0.273	1.7e-15
MGI|MGI:2135951	194	Mpv17l "Mpv17 transgene, kidne	0.468	0.881	0.276	2.2e-15
UNIPROTKB|Q9NR77	195	PXMP2 "Peroxisomal membrane pr	0.438	0.820	0.256	3.7e-15
RGD|2324483	194	Mpv17l "MPV17 mitochondrial me	0.468	0.881	0.271	6.3e-15

TAIR|locus:2011496 AT1G52870 "AT1G52870" [Arabidopsis thaliana (taxid:3702)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 245/376 (65%), Positives = 279/376 (74%)

Query:     3 SLSPQTLLSISKPN-KPNSKQLPSHACLLSKLSQNPNFSRNKQRKLXXXXXXXXXXEELD 61
             S+SP++ L +SKP+ KP+  Q+     LL          RNKQR            +E+D
Sbjct:     9 SISPRSFLPLSKPSLKPHRSQI-----LL----------RNKQRNCVSCALIR---DEID 50

Query:    62 VLPVQSQDLTDMQXXXXXXXXXXXXLASQVSQVSGFS----DGTLSFDGFSSASA----- 112
             ++PVQS+D TD +            +    S V GFS    +G LS +GF S+S+     
Sbjct:    51 LIPVQSRDRTDHEEGSVVVMSTETAVDGNESVVVGFSAATSEGQLSLEGFPSSSSSGADL 110

Query:   113 -DE-RRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNW 170
              DE RR NEEME++IDRTINATIVLA G++AITKLLTID DYWHGWT+FEI+RYAP HNW
Sbjct:   111 GDEKRRENEEMEKMIDRTINATIVLAAGSYAITKLLTIDHDYWHGWTLFEILRYAPQHNW 170

Query:   171 TAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSL 230
              AYEEALK NPVLAKMVISGVVYS+GDWIAQC++GKPLFE DR R  RSGLVGFTLHGSL
Sbjct:   171 IAYEEALKQNPVLAKMVISGVVYSVGDWIAQCYEGKPLFEIDRARTLRSGLVGFTLHGSL 230

Query:   231 SHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKA 290
             SH+YYQFCEELFPFQDWWVVP KVAFDQT W+A WNSIY+ VLG LR ESP SIF ELKA
Sbjct:   231 SHFYYQFCEELFPFQDWWVVPVKVAFDQTVWSAIWNSIYFTVLGFLRFESPISIFKELKA 290

Query:   291 TFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAEAP 350
             TF PMLTAGWKLWPFAHL+TYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARI+E+ 
Sbjct:   291 TFLPMLTAGWKLWPFAHLITYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARISESV 350

Query:   351 AEVKPC-LPDISPPEE 365
              E        I P +E
Sbjct:   351 IETSSSSTTTIDPSKE 366

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2128731 AT4G03410 "AT4G03410" [Arabidopsis thaliana (taxid:3702)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 182/230 (79%), Positives = 206/230 (89%)

Query:   119 EEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALK 178
             E+ +RL+ R INA IVLA GT A+TKLLTID DYW GWT++EI+RYAP HNW AYE+ LK
Sbjct:    77 EDTDRLMSRGINAAIVLAAGTVAVTKLLTIDHDYWQGWTLYEILRYAPEHNWFAYEQILK 136

Query:   179 TNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFC 238
             TNPVLAKM ISG+VYSLGDWIAQC++GKPLFEFDRTR+ RSGLVGFTLHGSLSHYYYQFC
Sbjct:   137 TNPVLAKMAISGIVYSLGDWIAQCYEGKPLFEFDRTRVLRSGLVGFTLHGSLSHYYYQFC 196

Query:   239 EELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTA 298
             E LFPFQ+WWVVPAKVAFDQT W+A WNSIY+ VLGLLR +SP  IFSE+K TF PMLTA
Sbjct:   197 EALFPFQEWWVVPAKVAFDQTVWSAIWNSIYFTVLGLLRFQSPADIFSEIKTTFLPMLTA 256

Query:   299 GWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARIAE 348
             GWKLWP AHLVTYG++PV+QRLLWVDC+ELIWVTILSTYSNEK+EA+ +E
Sbjct:   257 GWKLWPLAHLVTYGVIPVDQRLLWVDCIELIWVTILSTYSNEKAEAQASE 306

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q2KIY1 PXMP2 "Peroxisomal membrane protein 2" [Bos taurus (taxid:9913)]

 Score = 211 (79.3 bits), Expect = 5.4e-17, P = 5.4e-17
 Identities = 46/176 (26%), Positives = 86/176 (48%)

Query:   166 PLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFE-----FDRTRMFRSG 220
             P    + Y   L+  PVL K   SG++ +LG+++AQ  + K   E      D +   R  
Sbjct:    18 PRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYA 77

Query:   221 LVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLES 280
             + GF   G L H++Y   E   P +       ++  D+  +A A+ S++++V+  L  + 
Sbjct:    78 IYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFLEGQD 137

Query:   281 PFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILST 336
               +  +++K+ FWP L   W++W     +    +PV+ R+L+ + V L W   L++
Sbjct:   138 TAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYLAS 193

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:107487 Pxmp2 "peroxisomal membrane protein 2" [Mus musculus (taxid:10090)]

 Score = 201 (75.8 bits), Expect = 7.8e-16, P = 7.8e-16
 Identities = 46/164 (28%), Positives = 86/164 (52%)

Query:   177 LKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFE---FDRTRMFRSGLVGFTLHGSLSHY 233
             LK  PVL K V SG++ +LG+ +AQ  + K   +    + + + R  + G  + G LSHY
Sbjct:    29 LKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYLVYGLFVTGPLSHY 88

Query:   234 YYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIF-SELKATF 292
              Y F E   P +  W    ++  D+  +A  +  +++ V+ LL  ++  S+F +++++ F
Sbjct:    89 LYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLLLFFFVMNLLEGKN-VSVFVAKMRSGF 147

Query:   293 WPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILST 336
             WP L   W++W     +    VP++ R+L+ +   L W   L++
Sbjct:   148 WPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLAS 191

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

RGD|61812 Pxmp2 "peroxisomal membrane protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 50/181 (27%), Positives = 92/181 (50%)

Query:   162 VRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGL 221
             +R  P      Y   LK  PV+ K V SG++ +LG+ +AQ  + K   + D   +  SGL
Sbjct:    14 LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQ--KKDSRSLEVSGL 71

Query:   222 VGFTLHG-----SLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLL 276
             + + ++G      LSHY Y F E   P +  W    ++  D+  +A  +  +++ V+ LL
Sbjct:    72 LRYLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLL 131

Query:   277 RLESPFSIF-SELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILS 335
               ++  S+F +++++ FWP L   W++W     +    VP++ R+L+ +   L W   L+
Sbjct:   132 EGKN-ISVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLA 190

Query:   336 T 336
             +
Sbjct:   191 S 191

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=ISO;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=TAS

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|G3V9N2 Pxmp2 "Peroxisomal membrane protein 2, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 47/166 (28%), Positives = 88/166 (53%)

Query:   177 LKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHG-----SLS 231
             LK  PV+ K V SG++ +LG+ +AQ  + K   + D   +  SGL+ + ++G      LS
Sbjct:    29 LKFYPVVTKAVSSGILSALGNLLAQMIEKKQ--KKDSRSLEVSGLLRYLVYGLFVTGPLS 86

Query:   232 HYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIF-SELKA 290
             HY Y F E   P +  W    ++  D+  +A  +  +++ V+ LL  ++  S+F +++++
Sbjct:    87 HYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLLEGKN-ISVFVAKMRS 145

Query:   291 TFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILST 336
              FWP L   W++W     +    VP++ R+L+ +   L W   L++
Sbjct:   146 GFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLAS 191

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

ZFIN|ZDB-GENE-040912-184 zgc:92599 "zgc:92599" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 47/172 (27%), Positives = 92/172 (53%)

Query:   173 YEEALKTNPVLAKMVISGVVYSLGDWIAQCFQ-GKPLFEFD-RTRMFRSGLVGFTLHG-- 228
             Y   LK  P++ K V SG++ +LG+ ++Q  +  K + E   + ++   G V F ++G  
Sbjct:    21 YLSLLKKYPIITKSVTSGILSALGNLLSQVLEYQKNVKENSPKKKISILGPVHFAIYGLF 80

Query:   229 ---SLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIF 285
                 +SHY+Y   E L P    + +  ++  ++  +A A+  ++Y+V+  L  ++   + 
Sbjct:    81 ITGPVSHYFYHLLEVLLPTTVPYCLIKRLLLERLIFAPAFLLLFYVVMNALEGKTLADVQ 140

Query:   286 SELKATFWPMLTAGWKLW-PFAHLVTYGLVPVEQRLLWVDCVELIWVTILST 336
             ++LK ++WP +   WK+W PF   +    VPV+ R+L+ + V L W   L++
Sbjct:   141 NKLKTSYWPAMKMNWKVWTPF-QFININYVPVQFRVLFANMVALFWYAYLAS 191

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2135951 Mpv17l "Mpv17 transgene, kidney disease mutant-like" [Mus musculus (taxid:10090)]

 Score = 197 (74.4 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 49/177 (27%), Positives = 82/177 (46%)

Query:   170 WTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGS 229
             W A+ +A +  P    +++   ++S GD + Q  +G P  ++ +TR  R   +  T HG+
Sbjct:     5 WRAFPQAARRYPWPTNVLLYAGLFSAGDALQQRLRGGPA-DWRQTR--RVATLAVTFHGN 61

Query:   230 LSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELK 289
              ++ + +  E   P +    V AKV  DQT       S +Y+  G+  L+    IF +LK
Sbjct:    62 FNYVWLRLLERALPGRAPRTVLAKVLCDQTVGGPIALSAFYV--GMSVLQGKDDIFLDLK 119

Query:   290 ATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARI 346
               FW    +G   WPF  L  + LVPV  R  +      +W T L  +S +  +  +
Sbjct:   120 QKFWNTYKSGLMYWPFVQLTNFSLVPVHWRTAYTGLCAFLWATFLC-FSQQSGDGTL 175

GO:0005102 "receptor binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO;ISS

GO:0010730 "negative regulation of hydrogen peroxide biosynthetic process" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=ISO;ISS

GO:1901029 "negative regulation of mitochondrial outer membrane permeabilization" evidence=ISO

UNIPROTKB|Q9NR77 PXMP2 "Peroxisomal membrane protein 2" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 42/164 (25%), Positives = 82/164 (50%)

Query:   177 LKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTR----MFRSGLVGFTLHGSLSH 232
             L+  PVL K   SG++ +LG+++AQ  + K   E  R+       R  + GF   G LSH
Sbjct:    29 LRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPLRYAVYGFFFTGPLSH 88

Query:   233 YYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATF 292
             ++Y F E   P +       ++  D+  +A A+  ++++++  L  +   +  ++++  F
Sbjct:    89 FFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFLEGKDASAFAAKMRGGF 148

Query:   293 WPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILST 336
             WP L   W++W     +    VP++ R+L+ +   L W   L++
Sbjct:   149 WPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYLAS 192

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|2324483 Mpv17l "MPV17 mitochondrial membrane protein-like" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 48/177 (27%), Positives = 80/177 (45%)

Query:   170 WTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGS 229
             W A+  A +  P    +++   ++S GD + Q  +G P  ++ +TR  R   +  T HG+
Sbjct:     5 WRAFPRAARRYPWPTNVLLYAGLFSAGDALQQRLRGGPA-DWRQTR--RVATLALTFHGN 61

Query:   230 LSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELK 289
              ++ + +  E   P +    V AKV  DQT       S +Y+  G+  L+    IF +L+
Sbjct:    62 FNYMWLRLLERALPGRAPRTVLAKVLCDQTVGGPVALSAFYV--GMSILQGKDDIFLDLR 119

Query:   290 ATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEARI 346
               FW     G   WPF  L  + LVPV  R  +      +W T L  +S +  +  +
Sbjct:   120 QKFWNTYKTGLMYWPFVQLTNFSLVPVNWRTAYTGLCGFLWATFLC-FSQQSGDGTV 175

GO:0005102 "receptor binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005777 "peroxisome" evidence=ISO

GO:0010730 "negative regulation of hydrogen peroxide biosynthetic process" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=ISO

GO:1901029 "negative regulation of mitochondrial outer membrane permeabilization" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
pfam04117	68	pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family	4e-16

>gnl|CDD|202894 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family

 Score = 71.5 bits (176), Expect = 4e-16
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query: 273 LGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVT 332
           +GLL  +S   I  +LK  FWP L A WK+WP    + +  VPV  R+L+V+ V + W T
Sbjct: 1   MGLLEGKSLEEIKEKLKEKFWPTLKANWKVWPPVQFINFAFVPVHYRVLFVNLVGIGWNT 60

Query: 333 ILSTYSN 339
            LS  +N
Sbjct: 61  YLSYVNN 67

The 22-kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information. Mpv17 is a closely related peroxisomal protein. In mouse, the Mpv17 protein is involved in the development of early-onset glomerulosclerosis. More recently a homolog of Mpv17 in S. cerevisiae has been been found to be an integral membrane protein of the inner mitochondrial membrane where it has been proposed to have a role in ethanol metabolism and tolerance during heat-shock. Defects in MPV17 is associated with mitochondrial DNA depletion syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is a clinically heterogeneous group of disorders characterized by a reduction in mitochondrial DNA (mtDNA) copy number. Primary mtDNA depletion is inherited as an autosomal recessive trait and may affect single organs, typically muscle or liver, or multiple tissues. Individuals with the hepatocerebral form of mitochondrial DNA depletion syndrome have early progressive liver failure and neurologic abnormalities, hypoglycemia, and increased lactate in body fluids. NNH is an autosomal recessive disease that is prevalent among Navajo children in the South Western states of America. The major clinical features are hepatopathy, peripheral neuropathy, corneal anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, failure to thrive, and recurrent metabolic acidosis with intercurrent infections. Infantile, childhood, and classic forms of NNH have been described. Mitochondrial DNA depletion was detected in the livers of patients, suggesting a primary defect in mtDNA maintenance. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG1944	222	consensus Peroxisomal membrane protein MPV17 and r	100.0
PF04117	68	Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR0	99.84

>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=291.76  Aligned_cols=169  Identities=32%  Similarity=0.668  Sum_probs=160.7

Q ss_pred             HHhCChhHHHHHHHHHH-HHHHHHHHhHhCCC---CCCcchHHHHHHHHHHhhhhhHHHhHHHHHhhhhcCCCCccchhh
Q 017843          177 LKTNPVLAKMVISGVVY-SLGDWIAQCFQGKP---LFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPA  252 (365)
Q Consensus       177 L~~~PLlTK~iTSGvL~-~lGDliAQ~ie~k~---~~~~D~~Rt~rfal~G~~~~GPl~H~WY~~Ldr~fP~~s~~~vl~  252 (365)
                      ...+|+++++++++.+. .+||+++|.+++++   ...+|+.|++||+++|+++.||.+|+||++|++++|.++..+++.
T Consensus        46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~  125 (222)
T KOG1944|consen   46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVK  125 (222)
T ss_pred             hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccCccHHHHHH
Confidence            46789999999998888 99999999998765   578999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhHHHHHHHHHHHHhcCCChhHHHHHHHHhhHHHHhhccchhhHHHhhhhhcccCCchhhhhhHHHHHHHH
Q 017843          253 KVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVT  332 (365)
Q Consensus       253 KVllDQlV~sPi~~~~Ff~~~~lLeG~s~~ei~~klk~~~~p~L~aswkvWPpaq~INF~fVP~~~Rvlfvn~V~~~Wnt  332 (365)
                      |+++||++++|+.+.+||.++++++|++.+++..+++++++|+++++|++||++|++||.+||+++|++|+|+++++|++
T Consensus       126 kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~~  205 (222)
T KOG1944|consen  126 KVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVWNT  205 (222)
T ss_pred             HHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccchhhh
Q 017843          333 ILSTYSNEKSEAR  345 (365)
Q Consensus       333 yLS~l~n~k~ea~  345 (365)
                      |||++++++.+.+
T Consensus       206 ~Ls~~~~~~~~~~  218 (222)
T KOG1944|consen  206 YLSYKNASLVELA  218 (222)
T ss_pred             HHHHHhhcccccc
Confidence            9999998874443

>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes

Probab=99.84  E-value=1.7e-21  Score=150.81  Aligned_cols=68  Identities=41%  Similarity=0.778  Sum_probs=66.0

Q ss_pred             HHHhcCCChhHHHHHHHHhhHHHHhhccchhhHHHhhhhhcccCCchhhhhhHHHHHHHHHHhhhccc
Q 017843          273 LGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNE  340 (365)
Q Consensus       273 ~~lLeG~s~~ei~~klk~~~~p~L~aswkvWPpaq~INF~fVP~~~Rvlfvn~V~~~WntyLS~l~n~  340 (365)
                      |++++|+++++++++++++|+++++++|++|||+|++||.|||+++|++|+|+|+++|++|||++.|+
T Consensus         1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r   68 (68)
T PF04117_consen    1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR   68 (68)
T ss_pred             CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999875

PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00