Citrus Sinensis ID: 017844

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLIRANSDPVALHS
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHccccccccEEcccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHccccEEcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccHHHcccHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHcccccEEEEEEcccccccccccHHEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHHccccccccccccEEEEEccHHHHcHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHcEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccHHHHHHHHcccHHcEEccccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
mlwvdkyrpktldQVIVHQDIAQNLKKLVteqdcphllfygppgsgkKTLIMALLRQVfgpgaekvkvenktwkidagsrnidlelttlssanhvelspsdagfqdRYVVQEVIKEMAknrpidtkgkrGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRlilccnssskVTEAIRSRCLNIRINSPTEEQIVKVLEFIAkkeglqlpsgfATRLAEKSNRSLRRAILSFETcrvqqypfkdnqaipamdwEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYVSISFQILFIvplvdfpsplecsaqaayiqppliransdpvalhs
Flexible Loop (DISEMBL)
mlwvdkyrpktldqviVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGpgaekvkvenktwkidagsrNIDLELTTLSSANhvelspsdagfqdRYVVQEVIKEmaknrpidtkgkrgfkVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRclnirinspteEQIVKVLEFIAKkeglqlpsgfatrlaeKSNRSLRRAILSfetcrvqqypfkdnqaipAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLIRANSDPVALHS
Low Complexity Region (SEG)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYElllncvppvvvlkrllyellkrlDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLIRANSDPVALHS
Disordered region (IsUnstruct)
**WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA*********AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL**********TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE**NRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLI***********
Disordered Region (DISOPRED)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK*R******KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLIRANSDPVALH*
Disordered Region (DISEMBL)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLIRAN********
Disordered Region (DISPRO)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLIRANSDPVAL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLIRANSDPVALHS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q8R323	356	Replication factor C subu	yes	no	0.865	0.887	0.520	5e-97
P40938	356	Replication factor C subu	yes	no	0.865	0.887	0.523	9e-97
Q54BN3	347	Probable replication fact	yes	no	0.868	0.913	0.496	2e-96
Q2TBV1	356	Replication factor C subu	yes	no	0.865	0.887	0.520	4e-96
Q8X082	352	Replication factor C subu	N/A	no	0.865	0.897	0.448	9e-83
O94697	358	Replication factor C subu	yes	no	0.868	0.885	0.416	8e-75
P38251	354	Replication factor C subu	yes	no	0.865	0.892	0.367	2e-57
Q5UQE8	370	Putative replication fact	N/A	no	0.832	0.821	0.301	9e-39
A2SQT3	321	Replication factor C smal	yes	no	0.558	0.635	0.364	7e-35
Q6M044	315	Replication factor C smal	yes	no	0.663	0.768	0.332	1e-34

>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1

 Score =  354 bits (909), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 166/319 (52%), Positives = 238/319 (74%), Gaps = 3/319 (0%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct: 3   LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+++E++T    +  +   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
           L +R+ +P+ E I  VL  + +KEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
           F ++Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYELL +C+PP +++K LL EL
Sbjct: 240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query: 302 LKRLDAEIKHEVCHWAAYY 320
           L   D ++K EV   AAYY
Sbjct: 300 LHNCDGQLKGEVAQMAAYY 318

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.
Mus musculus (taxid: 10090)

>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2

 Score =  353 bits (907), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 167/319 (52%), Positives = 237/319 (74%), Gaps = 3/319 (0%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct: 3   LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+++E++T    +  +   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
           L +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
           F  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYELL +C+PP +++K LL EL
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query: 302 LKRLDAEIKHEVCHWAAYY 320
           L   D ++K EV   AAYY
Sbjct: 300 LHNCDGQLKGEVAQMAAYY 318

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Homo sapiens (taxid: 9606)

>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1

 Score =  352 bits (904), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 159/320 (49%), Positives = 238/320 (74%), Gaps = 3/320 (0%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLW+DKY+P +LD++  H DI+ NLK ++   D PHLL YGP G+GKKT I+A+L++++G
Sbjct: 1   MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P A K+K++++T+K    S+NI  ++TT+SS  H+E++P +AG  DR V+Q +IKE+A++
Sbjct: 61  PNALKLKIDHRTFKHPTSSKNI--QITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
            PID+     FK+++LNEVDKLS++AQH+LRRTMEKY+  CRLILCC+S++KV + I+SR
Sbjct: 119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CL IR+ +P++E+I KVL  +A  E   LPS  A  +A++S  +LR A++  E+ + +QY
Sbjct: 179 CLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQY 238

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF+  + +P +DWE ++ +I  D  +EQSP RL  VRGKLYELL +C+PP ++ K LL E
Sbjct: 239 PFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLE 297

Query: 301 LLKRLDAEIKHEVCHWAAYY 320
           + K+LD  +K E+ HWA+YY
Sbjct: 298 IFKKLDHNMKFEIIHWASYY 317

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1.

Dictyostelium discoideum (taxid: 44689)

>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1

 Score =  351 bits (901), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 166/319 (52%), Positives = 236/319 (73%), Gaps = 3/319 (0%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct: 3   LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+++E++T    +  +   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            ++T  ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
           L +R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
           F  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYELL +C+PP +++K LL EL
Sbjct: 240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query: 302 LKRLDAEIKHEVCHWAAYY 320
           L   D ++K EV   AAYY
Sbjct: 300 LHNCDGQLKGEVAQMAAYY 318

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Bos taurus (taxid: 9913)

>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B14D6.460 PE=3 SV=1

 Score =  307 bits (786), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 143/319 (44%), Positives = 218/319 (68%), Gaps = 3/319 (0%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           L VDK+RP++LD +  H ++++ L+ L    D PHLL YGP G+GKKT I+A L++++GP
Sbjct: 3   LIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G EK+K++ + ++    S N  LE   ++S  H+E++PSD G  DR VVQ+++KE+A+ +
Sbjct: 63  GVEKIKIDARVFQT---SSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
            +D   K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL  NS++ +   IRSRC
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRC 179

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
           L +R+ +PT ++I  VL   AKKEG  +  G   R+AE+S R+LRRA+L +E    Q   
Sbjct: 180 LLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEK 239

Query: 242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL 301
             D+  IP  DWE  + +IA +IM+E +P R+ QVR KLY+LL +C+P  ++LK L ++L
Sbjct: 240 VTDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKL 299

Query: 302 LKRLDAEIKHEVCHWAAYY 320
           +  +D  +K +V +W+A+Y
Sbjct: 300 IPLIDDALKADVIYWSAFY 318

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rfc5 PE=1 SV=1

 Score =  280 bits (717), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 135/324 (41%), Positives = 216/324 (66%), Gaps = 7/324 (2%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLW+D+YRPKTL  +  H+ +++ L  L +  + PHLL YGP G+GKKT ++A+LR+++G
Sbjct: 1   MLWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG+EK+K++ +T+   +  +   L++  +SS +H+E++PSD G  DR ++QE++K++A++
Sbjct: 61  PGSEKLKIDQRTFLTPSSKK---LQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQS 117

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
             +D + K+ FKV+V+N  D+L+R+AQ +LRRTMEKYS + RLIL  NS+SK+ E IRSR
Sbjct: 118 AQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSR 177

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
            L +R+ +PT E+I+ V+  I   +GL+ P      +A   +R+LR+AIL  ET   +  
Sbjct: 178 TLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSP 237

Query: 241 PFK---DNQA-IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKR 296
             K   D  A +P  DW+ F+ ++   ++QEQSP R+  VR  LY+LL +C+PP  +LK 
Sbjct: 238 GNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKE 297

Query: 297 LLYELLKRLDAEIKHEVCHWAAYY 320
           LL   L ++D ++   +   AA Y
Sbjct: 298 LLSFFLSKVDTKLHPYLIQAAANY 321

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 203/329 (61%), Gaps = 13/329 (3%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           LWVDKYRPK+L+ +  ++++   LK L  + +D PHLL YGP G+GKKT  MALL  +FG
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG  ++K++ + + + A +R   LEL  +SS  H+E++PSD G  DR V+QE++KE+A+ 
Sbjct: 63  PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119

Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
             +D +  +      +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +  
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179

Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
            I+SRCL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239

Query: 235 CRV-QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV 293
             +  +   K +  I   DW   + ++   I++E+S   L + R  LY+LL +C+P  ++
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII 299

Query: 294 LKRLLYELL--KRLDAEIKHEVCHWAAYY 320
           LK L + LL  + L+   K  +  +++ +
Sbjct: 300 LKELTFSLLDVETLNTTNKSSIIEYSSVF 328

Component of ATP-dependent clamp loader (RFC and RFC-like) complexes for DNA clamps, such as the POL30/PCNA homotrimer and the checkpoint clamp DDC1:MEC3:RAD17 complex. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighboring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA. Component of the replication factor C (RFC or activator 1) complex which loads POL30/PCNA and acts during elongation of primed DNA templates by DNA polymerase delta and epsilon. RFC has an essential but redundant activity in sister chromatid cohesion establishment. Component of the RFC-like complex CTF18-RFC which is required for efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. Component of the RFC-like RAD24-RFC complex which loads the checkpoint clamp DDC1:MEC3:RAD17 complex and is involved in DNA repair pathways. Component of the RFC-like ELG1-RFC complex which appears to have a role in DNA replication, replication fork re-start, recombination and repair.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subunit L478 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L478 PE=3 SV=1

 Score =  161 bits (407), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 182/325 (56%), Gaps = 21/325 (6%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           M + +KYRPK     + + D+ + LK L + +D PH++  GP GSGKKTL+  LL  ++ 
Sbjct: 1   MFFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYD 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                ++   + + I+  S   ++E+  L S  H+ + P+     D+Y++QE+IK+ A +
Sbjct: 61  EDVNILR--KRKYNINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAMH 115

Query: 121 RPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
           +  D  K KR FK +V++ ++ L+  +Q +LRRTME+Y+ +CR I+ CN+ SK+ + +RS
Sbjct: 116 KSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRS 175

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR-VQ 238
           RC    +  PT E I  V+++IA  E ++L       + +  N +L+ AI  F  C+ + 
Sbjct: 176 RCRTFCVPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIW-FLNCKGLN 234

Query: 239 QYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQ----VRGKLYELLLNCVPPVVVL 294
             PF       A+D E F   + S I++ ++ K +F+    +R  +Y +L+  +    ++
Sbjct: 235 CSPF------IALD-EAFDLVVES-ILECRTGKNIFKIHNDIRTNIYNILITNIKGSEII 286

Query: 295 KRLLYELLKRLDAE-IKHEVCHWAA 318
             L+ +L++++D + I   +  +A+
Sbjct: 287 NILVDKLIRKIDDDVINMNIIQYAS 311

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Acanthamoeba polyphaga (taxid: 5757)

>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1

 Score =  148 bits (373), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 126/236 (53%), Gaps = 32/236 (13%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +W++KYRPK L +V+  QD+ + L+  V  +  PHLLF G  G GK T  +AL R++FG 
Sbjct: 7   IWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFG- 65

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                     TW +                 N  EL+ SD    D  VV+  IK+ A+  
Sbjct: 66  ---------DTWNM-----------------NFRELNASDERGID--VVRNQIKQFARTA 97

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P+   G   FK+L L+E D L+++AQ +LRRTME Y+ +CR IL CN SSK+ + I+SRC
Sbjct: 98  PL---GDATFKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRC 154

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV 237
              R    T+E I + +  IAKKEG+ +  G    +   S   +R+AI + +   +
Sbjct: 155 AIYRFRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAAI 210

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) (taxid: 410358)

>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis (strain S2 / LL) GN=rfcS PE=3 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 148/292 (50%), Gaps = 50/292 (17%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+TL +V+ H +I + L   V ++  PHLLF G PG GK T  +AL + ++G  
Sbjct: 5   WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG-- 62

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                    TW+                  N +EL+ SD    D  V++  +K+ A+ +P
Sbjct: 63  --------DTWR-----------------ENFLELNSSDERGID--VIRTKVKDFARTKP 95

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
           I   G   FKV+ L+E D L+ +AQ++LRRTMEKYS  CR IL CN  SK+   I+SRC 
Sbjct: 96  I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCA 152

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242
             R +    E +V+ L+ I++KE L L  G    +   S   +R+AI   +T        
Sbjct: 153 IFRFSPLKTEDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTA------- 205

Query: 243 KDNQAIPAMDWEEFVFEIASDIMQEQSPK--------RLFQVRGKLYELLLN 286
               A+     EE V+++AS    ++  K        +  + R +LY L+++
Sbjct: 206 ---AAVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFVEAREQLYNLMID 254

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Methanococcus maripaludis (strain S2 / LL) (taxid: 267377)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
359806894	354	uncharacterized protein LOC100818329 [Gl	0.876	0.903	0.862	1e-169
449453820	354	PREDICTED: replication factor C subunit	0.876	0.903	0.859	1e-169
356511754	354	PREDICTED: replication factor C subunit	0.876	0.903	0.868	1e-169
388499612	354	unknown [Lotus japonicus]	0.876	0.903	0.856	1e-168
388511555	354	unknown [Medicago truncatula]	0.876	0.903	0.846	1e-167
225439256	354	PREDICTED: probable replication factor C	0.876	0.903	0.878	1e-165
255569436	342	replication factor C / DNA polymerase II	0.876	0.935	0.838	1e-163
15241031	354	replication factor C subunit 3/5 [Arabid	0.876	0.903	0.825	1e-162
224146053	353	predicted protein [Populus trichocarpa]	0.873	0.903	0.875	1e-161
297812933	359	nucleoside-triphosphatase/ nucleotide bi	0.876	0.891	0.818	1e-161

>gi|359806894|ref|NP_001241064.1| uncharacterized protein LOC100818329 [Glycine max] gi|255645652|gb|ACU23320.1| unknown [Glycine max]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 276/320 (86%), Positives = 307/320 (95%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQV+VH DIA+NLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVMVHTDIARNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PGAEKVKV+N+TWK+DAGSR++DLELTTLSSANH+E+SPSDAGFQDRY+VQEVIKEMAKN
Sbjct: 61  PGAEKVKVDNRTWKVDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P+EEQIV+VLEFI KKEGLQLP GFA R+ EKSNR+LRRAILSFETCRVQQY
Sbjct: 181 CLNVRINAPSEEQIVEVLEFIGKKEGLQLPPGFAARIVEKSNRNLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF + Q IP MDWEE++ EIASDIM+EQSPKRLFQVRGKLYELL+NC+PP ++LKRLLYE
Sbjct: 241 PFTNKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYE 300

Query: 301 LLKRLDAEIKHEVCHWAAYY 320
           LL++LDAE+KHEVCHWAAYY
Sbjct: 301 LLRKLDAELKHEVCHWAAYY 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453820|ref|XP_004144654.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus] gi|449521275|ref|XP_004167655.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 275/320 (85%), Positives = 305/320 (95%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQ+ VHQD+AQNLKKLV EQDCPHLLFYGP GSGKKTL+MAL+RQ+FG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P A+KVKVENKTWK+DAG+R ID+ELTTLSSANHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPID+KGKRG KVLVLN+VDKLSREAQHSLRRTMEKYS+ CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN PTEEQI KVLE+I KKEGLQLPSGFA+R+AEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF  NQAIP MDWEE++ EIAS+IM+EQSPKRLFQVRGKLYELL+NC+PP ++LKRLLYE
Sbjct: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKRLDAEIKHEVCHWAAYY 320
           LLK+LDAE+KHEVCHWAAYY
Sbjct: 301 LLKKLDAELKHEVCHWAAYY 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511754|ref|XP_003524588.1| PREDICTED: replication factor C subunit 3-like [Glycine max]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 278/320 (86%), Positives = 306/320 (95%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQV+VH DIA NLKKLVTEQD PHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVMVHTDIAHNLKKLVTEQDSPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PGAEKVKVEN+TWKIDAGSR++DLELTTLSSANH+E+SPSDAGFQDRY+VQEVIKEMAKN
Sbjct: 61  PGAEKVKVENRTWKIDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P+EEQIV+VLEFI KKEGLQLP GFA R+AEKSNR+LRRAILSFETCRV QY
Sbjct: 181 CLNVRINAPSEEQIVQVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVLQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF + QAIP MDWEE++ EIASDIM+EQSPKRLFQVRGKLYELL+NC+PP ++LKRLLYE
Sbjct: 241 PFTNKQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYE 300

Query: 301 LLKRLDAEIKHEVCHWAAYY 320
           LL++LDAE+KHEVCHWAAYY
Sbjct: 301 LLRKLDAELKHEVCHWAAYY 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499612|gb|AFK37872.1| unknown [Lotus japonicus]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 274/320 (85%), Positives = 307/320 (95%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQV+VH D+AQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+TWK+DAGSR+IDLELTTLSSA+H+E+SPSDAGFQDRYVVQE+IKEMAKN
Sbjct: 61  TAAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRLILCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLNIRIN+P+EEQIV+V+EFI KKEGLQ+PSGFA R+AEKSNR+LRRAILSFETCRVQQY
Sbjct: 181 CLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF + Q IP MDWEE++ EIASDIM+EQ+PKRLFQVRGKLYELL+NC+PP ++LKRLL+E
Sbjct: 241 PFTNRQTIPPMDWEEYISEIASDIMKEQNPKRLFQVRGKLYELLINCIPPEMILKRLLFE 300

Query: 301 LLKRLDAEIKHEVCHWAAYY 320
           LL++LDAE+KHEVCHWAAYY
Sbjct: 301 LLRKLDAELKHEVCHWAAYY 320

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511555|gb|AFK43839.1| unknown [Medicago truncatula]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 271/320 (84%), Positives = 302/320 (94%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLD  +VH DIAQNLKKLVTE DCPHLLFYGP G+GKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PGAEKVKVEN+ WK+DAGSR+IDLELTTLSSANH+E++PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GFKVLVLN+VDKLSREAQHSLRRTMEKYSA CRL+LCCNSSS+VTEAIRSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P+EEQIV+VL+FI KKEGLQLPS  A R+AEKSNR+LRRAILSFETCRVQQY
Sbjct: 181 CLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF D Q IP MDWEE++ EIASDIM+EQSPKRLFQVRGKLYELL NC+PP ++LKRLLYE
Sbjct: 241 PFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLTNCIPPEIILKRLLYE 300

Query: 301 LLKRLDAEIKHEVCHWAAYY 320
           LL++LDAE+KHEVCHWAAYY
Sbjct: 301 LLRKLDAELKHEVCHWAAYY 320

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439256|ref|XP_002263213.1| PREDICTED: probable replication factor C subunit 3 [Vitis vinifera] gi|296089274|emb|CBI39046.3| unnamed protein product [Vitis vinifera]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/320 (87%), Positives = 308/320 (96%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLD +IVH D+AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMA+LRQ+FG
Sbjct: 1   MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P A+KVKVENKTWKIDAG+R IDLELTTLSS +H+EL+P DAGFQDRY+VQE+IKEMAKN
Sbjct: 61  PSADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+GF+VLVLNEVD+LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA+RSR
Sbjct: 121 RPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLNIRIN+PTEEQI KVLEFIAKKEGLQLPSGFATR+AEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNIRINAPTEEQITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF +NQA+P MDWEE+V EIASDIM+EQSPKRLFQVRGKLYELL+NC+PP ++LKRLL E
Sbjct: 241 PFTNNQAMPPMDWEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLLE 300

Query: 301 LLKRLDAEIKHEVCHWAAYY 320
           LLK+LDAE+KHEVCHWAAYY
Sbjct: 301 LLKKLDAELKHEVCHWAAYY 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569436|ref|XP_002525685.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223534985|gb|EEF36668.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 269/321 (83%), Positives = 301/321 (93%), Gaps = 1/321 (0%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQ++VH+DIAQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P AEKVKVENKTWKIDAGSR ID+ELTTLSS++H+E+SP D GFQDRY+VQEVIK+MAKN
Sbjct: 61  PSAEKVKVENKTWKIDAGSRTIDVELTTLSSSHHIEMSPGDVGFQDRYIVQEVIKDMAKN 120

Query: 121 RP-IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
           RP +D KG++G+K+LVLNEVDKLSREAQHSLRRTMEKYSA CRLILCCNSSSKVTEAIRS
Sbjct: 121 RPLVDAKGRKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRS 180

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ 239
           RCLN+RI++P+EEQIVKVLEFI KKEGLQLP GFA R+AEKSNRSLRRA+LSFETCRVQQ
Sbjct: 181 RCLNVRISAPSEEQIVKVLEFIGKKEGLQLPHGFAARVAEKSNRSLRRAVLSFETCRVQQ 240

Query: 240 YPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLY 299
           YPF  NQ IP MDWEE+V EIASDIM+EQSPK+LFQVRGKLYELL+NC+PP ++LKRL+ 
Sbjct: 241 YPFTSNQPIPPMDWEEYVSEIASDIMREQSPKKLFQVRGKLYELLINCIPPDIILKRLVN 300

Query: 300 ELLKRLDAEIKHEVCHWAAYY 320
           ELLK+LD E+KHEV HWAAYY
Sbjct: 301 ELLKKLDEELKHEVSHWAAYY 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241031|ref|NP_198126.1| replication factor C subunit 3/5 [Arabidopsis thaliana] gi|18389268|gb|AAL67077.1| putative replication factor C [Arabidopsis thaliana] gi|20259637|gb|AAM14175.1| putative replication factor C [Arabidopsis thaliana] gi|332006337|gb|AED93720.1| replication factor C subunit 3/5 [Arabidopsis thaliana]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 264/320 (82%), Positives = 300/320 (93%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPK+LD+VIVH+DIAQ LKKLV+EQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ Y
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF  NQ I  MDWEE+V EIA+D+M+EQSPK+LFQVRGK+YELL+NC+PP V+LKRLL+E
Sbjct: 241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 300

Query: 301 LLKRLDAEIKHEVCHWAAYY 320
           LLK+LD+E+K EVCHWAAYY
Sbjct: 301 LLKKLDSELKLEVCHWAAYY 320

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146053|ref|XP_002325862.1| predicted protein [Populus trichocarpa] gi|222862737|gb|EEF00244.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/320 (87%), Positives = 300/320 (93%), Gaps = 1/320 (0%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPKTLDQVIVHQ+IA+NLKKLVTEQDCPHLLFYGP GSGKKTLIMALLRQ+FG
Sbjct: 1   MLWVDKYRPKTLDQVIVHQEIAENLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+TWKIDAGSR IDLELTTLSS NHVELSPSD GFQDRY+VQE+IKEMAKN
Sbjct: 61  TSAEKVKVENRTWKIDAGSRTIDLELTTLSSTNHVELSPSDVGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P EEQIVKVLEFI KKEGLQLP GFA R+A+KSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINAPKEEQIVKVLEFIGKKEGLQLPPGFAARIADKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYE 300
           PF  NQAIP MDWEE+V EI SDIM+EQSPKRLFQVRGKLYELL+NC+PP ++LK L  E
Sbjct: 241 PFSSNQAIPPMDWEEYVSEICSDIMREQSPKRLFQVRGKLYELLINCIPPEIILKLLS-E 299

Query: 301 LLKRLDAEIKHEVCHWAAYY 320
           LLK+LD E+KHEVCHWAAYY
Sbjct: 300 LLKKLDEELKHEVCHWAAYY 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812933|ref|XP_002874350.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gi|297320187|gb|EFH50609.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 266/325 (81%), Positives = 301/325 (92%), Gaps = 5/325 (1%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           MLWVDKYRPK+LD+VIVH+DIAQNLKKLVTEQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ Y
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLK----- 295
           PF  NQ I  MDWEE+V EIA+D+M+EQSPK+LFQVRGK+YELL+NC+PP V+LK     
Sbjct: 241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKFMLSQ 300

Query: 296 RLLYELLKRLDAEIKHEVCHWAAYY 320
           RLL+ELLK+LD+E+K EVCHWAAYY
Sbjct: 301 RLLHELLKKLDSELKLEVCHWAAYY 325

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2180315	354	EMB2775 "EMBRYO DEFECTIVE 2775	0.876	0.903	0.771	2.3e-133
RGD|1306832	356	Rfc3 "replication factor C (ac	0.865	0.887	0.498	2.9e-80
UNIPROTKB|F1P3C0	356	RFC3 "Uncharacterized protein"	0.865	0.887	0.495	6e-80
UNIPROTKB|E2R7L0	356	RFC3 "Uncharacterized protein"	0.865	0.887	0.498	9.7e-80
MGI|MGI:1916513	356	Rfc3 "replication factor C (ac	0.865	0.887	0.492	9.7e-80
UNIPROTKB|P40938	356	RFC3 "Replication factor C sub	0.865	0.887	0.495	2e-79
DICTYBASE|DDB_G0293702	347	rfc3 "replication factor C sub	0.868	0.913	0.462	2.6e-79
UNIPROTKB|F1RSR4	356	RFC3 "Uncharacterized protein"	0.865	0.887	0.492	3.3e-79
UNIPROTKB|Q2TBV1	356	RFC3 "Replication factor C sub	0.865	0.887	0.492	5.4e-79
ZFIN|ZDB-GENE-020809-3	356	rfc3 "replication factor C (ac	0.865	0.887	0.489	3.8e-78

TAIR|locus:2180315 EMB2775 "EMBRYO DEFECTIVE 2775" [Arabidopsis thaliana (taxid:3702)]

 Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
 Identities = 247/320 (77%), Positives = 278/320 (86%)

Query:     1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             MLWVDKYRPK+LD+VIVH+DIAQ LKKLV+EQDCPHLLFYGP GSGKKTLIMALL+Q++G
Sbjct:     1 MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query:    61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
               AEKVKVEN+ WK+DAGSR IDLELTTLSS NHVEL+PSDAGFQDRY+VQE+IKEMAKN
Sbjct:    61 ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query:   121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
             RPIDTKGK+G+KVLVLNEVDKLSREAQHSLRRTMEKYS+SCRLILCCNSSSKVTEAI+SR
Sbjct:   121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query:   181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
             CLN+RIN+P++E+IVKVLEF+AKKE LQLP GFA R+AEKSNRSLRRAILS ETCRVQ Y
Sbjct:   181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query:   241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXX 300
             PF  NQ I  MDWEE+V EIA+D+M+EQSPK+LFQVRGK+YE                  
Sbjct:   241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 300

Query:   301 XXXXXDAEIKHEVCHWAAYY 320
                  D+E+K EVCHWAAYY
Sbjct:   301 LLKKLDSELKLEVCHWAAYY 320

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006260 "DNA replication" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

RGD|1306832 Rfc3 "replication factor C (activator 1) 3" [Rattus norvegicus (taxid:10116)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 159/319 (49%), Positives = 223/319 (69%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L IR+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F ++Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                   
Sbjct:   240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYY 320
                 D ++K EV   AAYY
Sbjct:   300 LHNCDGQLKGEVAQMAAYY 318

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005663 "DNA replication factor C complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=IEA;ISO

GO:0046683 "response to organophosphorus" evidence=IEA;ISO

UNIPROTKB|F1P3C0 RFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 158/319 (49%), Positives = 223/319 (69%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP  L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM LLR+++G 
Sbjct:     3 LWVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E+++  I A S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQS--ITAPSKK-KIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY A+CRLILCCNS SK+   I+SRC
Sbjct:   120 QLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L++R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E+CRVQQYP
Sbjct:   180 LSVRVPAPSIEDICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP MDWE ++ E A+ I+ +QSP+RL +VRG+LYE                   
Sbjct:   240 FSADQDIPEMDWEIYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIMKGLLTEL 299

Query:   302 XXXXDAEIKHEVCHWAAYY 320
                 D ++K EV   AA+Y
Sbjct:   300 LNNCDGQLKGEVAQMAAFY 318

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0046683 "response to organophosphorus" evidence=IEA

UNIPROTKB|E2R7L0 RFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 159/319 (49%), Positives = 222/319 (69%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP  DWE ++ E A+ I+ EQ+P+RL +VRG+LYE                   
Sbjct:   240 FTADQEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYY 320
                 D ++K EV   AAYY
Sbjct:   300 LHNCDGQLKGEVAQMAAYY 318

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1916513 Rfc3 "replication factor C (activator 1) 3" [Mus musculus (taxid:10090)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 157/319 (49%), Positives = 223/319 (69%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+ +P+ E I  VL  + +KEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F ++Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                   
Sbjct:   240 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYY 320
                 D ++K EV   AAYY
Sbjct:   300 LHNCDGQLKGEVAQMAAYY 318

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005663 "DNA replication factor C complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006260 "DNA replication" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|P40938 RFC3 "Replication factor C subunit 3" [Homo sapiens (taxid:9606)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 158/319 (49%), Positives = 222/319 (69%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                   
Sbjct:   240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYY 320
                 D ++K EV   AAYY
Sbjct:   300 LHNCDGQLKGEVAQMAAYY 318

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS

GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006260 "DNA replication" evidence=IDA;TAS

GO:0003689 "DNA clamp loader activity" evidence=TAS

GO:0016887 "ATPase activity" evidence=IDA

GO:0046683 "response to organophosphorus" evidence=IEP

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=TAS

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

DICTYBASE|DDB_G0293702 rfc3 "replication factor C subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 148/320 (46%), Positives = 221/320 (69%)

Query:     1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             MLW+DKY+P +LD++  H DI+ NLK ++   D PHLL YGP G+GKKT I+A+L++++G
Sbjct:     1 MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60

Query:    61 PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
             P A K+K++++T+K    S+NI  ++TT+SS  H+E++P +AG  DR V+Q +IKE+A++
Sbjct:    61 PNALKLKIDHRTFKHPTSSKNI--QITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118

Query:   121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
              PID+     FK+++LNEVDKLS++AQH+LRRTMEKY+  CRLILCC+S++KV + I+SR
Sbjct:   119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178

Query:   181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
             CL IR+ +P++E+I KVL  +A  E   LPS  A  +A++S  +LR A++  E+ + +QY
Sbjct:   179 CLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQY 238

Query:   241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXX 300
             PF+  + +P +DWE ++ +I  D  +EQSP RL  VRGKLYE                  
Sbjct:   239 PFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLE 297

Query:   301 XXXXXDAEIKHEVCHWAAYY 320
                  D  +K E+ HWA+YY
Sbjct:   298 IFKKLDHNMKFEIIHWASYY 317

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003689 "DNA clamp loader activity" evidence=ISS

GO:0031391 "Elg1 RFC-like complex" evidence=ISS

GO:0031389 "Rad17 RFC-like complex" evidence=ISS

GO:0006298 "mismatch repair" evidence=ISS

GO:0006272 "leading strand elongation" evidence=ISS

GO:0005663 "DNA replication factor C complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1RSR4 RFC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 157/319 (49%), Positives = 222/319 (69%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETNSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+ +P+ E I  VL  + KKEGL LPS  A +LAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                   
Sbjct:   240 FTVDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYY 320
                 D ++K EV   AAYY
Sbjct:   300 LHNCDGQLKGEVAQMAAYY 318

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q2TBV1 RFC3 "Replication factor C subunit 3" [Bos taurus (taxid:9913)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 157/319 (49%), Positives = 221/319 (69%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGP G+GKKT IM +LR+++G 
Sbjct:     3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E++T  I   S+   +E++T++S  H+E++PSDAG  DR V+QE++K +A+++
Sbjct:    63 GVEKLRIEHQT--ITTPSKK-KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              ++T  ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRC
Sbjct:   120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                   
Sbjct:   240 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 299

Query:   302 XXXXDAEIKHEVCHWAAYY 320
                 D ++K EV   AAYY
Sbjct:   300 LHNCDGQLKGEVAQMAAYY 318

GO:0005634 "nucleus" evidence=IEA

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-020809-3 rfc3 "replication factor C (activator 1) 3" [Danio rerio (taxid:7955)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 156/319 (48%), Positives = 217/319 (68%)

Query:     2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
             LWVDKYRP +L ++  H++ A  LK LV   D PHLL YGP G+GKKT IM LLR+++G 
Sbjct:     3 LWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGA 62

Query:    62 GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             G EK+++E+++  I   S+   LE+ T++S  H+E++PSDAG  DR V+QE+IK +A+++
Sbjct:    63 GVEKLRIEHQS--ITTPSKK-KLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQ 119

Query:   122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
              I +  +R FKV++L EVD+L+++AQH+LRRTMEKY A+CRLILCCNS+SKV   IRSRC
Sbjct:   120 QIQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRC 179

Query:   182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP 241
             L +R+  P+ E++  VL  + +KEGL LP   A ++AEKS R+LR+A+L  E CRVQQYP
Sbjct:   180 LAVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYP 239

Query:   242 FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXX 301
             F  +Q IP  DWE ++ E A+ I+ +QSP+RL +VR +LYE                   
Sbjct:   240 FSPDQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCISPEVIMKGLVTEL 299

Query:   302 XXXXDAEIKHEVCHWAAYY 320
                 D  +K EV   AAYY
Sbjct:   300 LSNCDGHLKAEVAQMAAYY 318

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40938	RFC3_HUMAN	No assigned EC number	0.5235	0.8657	0.8876	yes	no
Q54BN3	RFC3_DICDI	No assigned EC number	0.4968	0.8684	0.9135	yes	no
P38251	RFC5_YEAST	No assigned EC number	0.3677	0.8657	0.8926	yes	no
Q2TBV1	RFC3_BOVIN	No assigned EC number	0.5203	0.8657	0.8876	yes	no
Q8R323	RFC3_MOUSE	No assigned EC number	0.5203	0.8657	0.8876	yes	no
O94697	RFC5_SCHPO	No assigned EC number	0.4166	0.8684	0.8854	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
PRK00440	319	PRK00440, rfc, replication factor C small subunit;	4e-56
PRK12402	337	PRK12402, PRK12402, replication factor C small sub	2e-44
PLN03025	319	PLN03025, PLN03025, replication factor C subunit;	2e-34
PRK04132	846	PRK04132, PRK04132, replication factor C small sub	3e-27
PHA02544	316	PHA02544, 44, clamp loader, small subunit; Provisi	5e-26
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-17
COG2812	515	COG2812, DnaX, DNA polymerase III, gamma/tau subun	1e-16
TIGR00678	188	TIGR00678, holB, DNA polymerase III, delta' subuni	2e-15
PRK14953	486	PRK14953, PRK14953, DNA polymerase III subunits ga	5e-14
PRK14962	472	PRK14962, PRK14962, DNA polymerase III subunits ga	4e-13
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	1e-12
TIGR02397	355	TIGR02397, dnaX_nterm, DNA polymerase III, subunit	2e-11
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	3e-11
PRK14961	363	PRK14961, PRK14961, DNA polymerase III subunits ga	4e-11
PRK14970	367	PRK14970, PRK14970, DNA polymerase III subunits ga	6e-11
PRK07133	725	PRK07133, PRK07133, DNA polymerase III subunits ga	2e-10
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	2e-10
PRK04132	846	PRK04132, PRK04132, replication factor C small sub	3e-10
pfam13177	161	pfam13177, DNA_pol3_delta2, DNA polymerase III, de	3e-10
PRK14956	484	PRK14956, PRK14956, DNA polymerase III subunits ga	2e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-09
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	5e-09
PRK06305	451	PRK06305, PRK06305, DNA polymerase III subunits ga	6e-09
PRK14964	491	PRK14964, PRK14964, DNA polymerase III subunits ga	9e-09
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-08
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	5e-08
PRK14958	509	PRK14958, PRK14958, DNA polymerase III subunits ga	9e-08
PRK14957	546	PRK14957, PRK14957, DNA polymerase III subunits ga	1e-07
PRK06645	507	PRK06645, PRK06645, DNA polymerase III subunits ga	2e-07
PRK05564	313	PRK05564, PRK05564, DNA polymerase III subunit del	1e-06
PRK14969	527	PRK14969, PRK14969, DNA polymerase III subunits ga	1e-06
pfam08542	89	pfam08542, Rep_fac_C, Replication factor C C-termi	2e-06
PRK08769	319	PRK08769, PRK08769, DNA polymerase III subunit del	4e-06
PRK08451	535	PRK08451, PRK08451, DNA polymerase III subunits ga	4e-06
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	5e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	7e-06
PRK06090	319	PRK06090, PRK06090, DNA polymerase III subunit del	7e-06
PRK09112	351	PRK09112, PRK09112, DNA polymerase III subunit del	1e-05
COG0470	230	COG0470, HolB, ATPase involved in DNA replication	1e-05
PRK00080	328	PRK00080, ruvB, Holliday junction DNA helicase Ruv	3e-05
COG2255	332	COG2255, RuvB, Holliday junction resolvasome, heli	4e-05
TIGR00602	637	TIGR00602, rad24, checkpoint protein rad24	5e-05
PRK05896	605	PRK05896, PRK05896, DNA polymerase III subunits ga	6e-05
PRK14960	702	PRK14960, PRK14960, DNA polymerase III subunits ga	6e-05
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	7e-05
pfam03215	490	pfam03215, Rad17, Rad17 cell cycle checkpoint prot	7e-05
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	8e-05
PRK06647	563	PRK06647, PRK06647, DNA polymerase III subunits ga	9e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
pfam05496	231	pfam05496, RuvB_N, Holliday junction DNA helicase	1e-04
pfam13401	124	pfam13401, AAA_22, AAA domain	3e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-04
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	4e-04
PRK07471	365	PRK07471, PRK07471, DNA polymerase III subunit del	6e-04
PRK07940	394	PRK07940, PRK07940, DNA polymerase III subunit del	0.001
TIGR02903	615	TIGR02903, spore_lon_C, ATP-dependent protease, Lo	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
PRK14955	397	PRK14955, PRK14955, DNA polymerase III subunits ga	0.004

>gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed

 Score =  185 bits (473), Expect = 4e-56
 Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 32/228 (14%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+++  ++I + LK  V E++ PHLLF GPPG+GK T  +AL R+++G 
Sbjct: 6   IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG- 64

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    + W+                  N +EL+ SD    D  V++  IKE A+  
Sbjct: 65  ---------EDWRE-----------------NFLELNASDERGID--VIRNKIKEFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P+   G   FK++ L+E D L+ +AQ +LRRTME YS + R IL CN SSK+ + I+SRC
Sbjct: 97  PV---GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R +   +E + + L +IA+ EG+++       +   S   +R+AI
Sbjct: 154 AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAI 201

Length = 319

>gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed

 Score =  155 bits (394), Expect = 2e-44
 Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 55/258 (21%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
            LW +KYRP  L+ ++   ++ + L + V   + PHLL  GPPGSGK   + AL R+++G
Sbjct: 3   PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ--------DRYV--- 109
                       W+                  N  E + +D   Q         R+    
Sbjct: 63  ----------DPWE-----------------NNFTEFNVADFFDQGKKYLVEDPRFAHFL 95

Query: 110 -------------VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156
                         + V+KE A  RP+       +K ++L+  + L  +AQ +LRR ME+
Sbjct: 96  GTDKRIRSSKIDNFKHVLKEYASYRPLSA----DYKTILLDNAEALREDAQQALRRIMEQ 151

Query: 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216
           YS +CR I+     SK+   IRSRCL +   +PT++++V VLE IA+ EG+         
Sbjct: 152 YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLEL 211

Query: 217 LAEKSNRSLRRAILSFET 234
           +A  +   LR+AIL+ +T
Sbjct: 212 IAYYAGGDLRKAILTLQT 229

Length = 337

>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional

 Score =  128 bits (324), Expect = 2e-34
 Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 33/206 (16%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP  LD ++ ++D    L+ +  + + P+L+  GPPG+GK T I+AL  ++ GP 
Sbjct: 3   WVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 62

Query: 63  A-EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             E V                            +EL+ SD    D  VV+  IK  A+ +
Sbjct: 63  YKEAV----------------------------LELNASDDRGID--VVRNKIKMFAQKK 92

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                G+   K+++L+E D ++  AQ +LRRTME YS + R  L CN+SSK+ E I+SRC
Sbjct: 93  VTLPPGRH--KIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGL 207
             +R +  ++++I+  L  + + E +
Sbjct: 151 AIVRFSRLSDQEILGRLMKVVEAEKV 176

Length = 319

>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional

 Score =  113 bits (283), Expect = 3e-27
 Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 29/204 (14%)

Query: 93  NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
           N +EL+ SD    +  V++E +KE A+ +PI   G   FK++ L+E D L+++AQ +LRR
Sbjct: 598 NFLELNASDERGIN--VIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRR 652

Query: 153 TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSG 212
           TME +S++ R IL CN SSK+ E I+SRC   R     +E I K L +IA+ EGL+L   
Sbjct: 653 TMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEE 712

Query: 213 FATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMD---WEEFVFEIAS------- 262
               +   +   +RRAI                QA  A+D    +E VF +AS       
Sbjct: 713 GLQAILYIAEGDMRRAINIL-------------QAAAALDDKITDENVFLVASRARPEDI 759

Query: 263 -DIMQEQSPKRLFQVRGKLYELLL 285
            ++M         + R KL E+LL
Sbjct: 760 REMMLLALKGNFLKAREKLREILL 783

Length = 846

>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional

 Score =  105 bits (265), Expect = 5e-26
 Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 42/209 (20%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGP-PGSGKKTLIMALLRQVFG 60
           +W  KYRP T+D+ I+     +  K +V +   P++L + P PG+GK T+  AL  +V  
Sbjct: 10  MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV-- 67

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
            GAE + V     +ID                                 V+  +   A  
Sbjct: 68  -GAEVLFVNGSDCRID--------------------------------FVRNRLTRFAST 94

Query: 121 RPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
             +   GK    V++++E D+L   +AQ  LR  ME YS +C  I+  N+ + + E +RS
Sbjct: 95  VSLTGGGK----VIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150

Query: 180 RCLNIRINSPT-EEQIVKVLEFIAKKEGL 207
           RC  I    PT EEQI  + + I + +G+
Sbjct: 151 RCRVIDFGVPTKEEQIEMMKQMIVRCKGI 179

Length = 316

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 52/240 (21%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE--QDCPH--LLFYGPPGSGKKTLIMALLR 56
           M WV+KYRPKTL  V+ ++   + L++ +    +  P   LL YGPPG GK +L  AL  
Sbjct: 2   MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHAL-- 59

Query: 57  QVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116
                                 + +   E+        +EL+ SD   +   V++ V  E
Sbjct: 60  ----------------------ANDYGWEV--------IELNASD--QRTADVIERVAGE 87

Query: 117 MAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLRRTMEKYSASCRLILCCN---S 169
            A +  +   G R  K+++L+EVD +     R    ++   ++K  A   +IL  N    
Sbjct: 88  AATSGSL--FGARR-KLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYD 142

Query: 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            S     +R+ CL I     +   IV VL+ I +KEG++        +AE+S   LR AI
Sbjct: 143 PSLRE--LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAI 200

Length = 482

>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 82/322 (25%), Positives = 128/322 (39%), Gaps = 59/322 (18%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGK----KTLIMALLRQVFG 60
           KYRPKT D V+  + + + L   +      H  LF GP G GK    + L  AL  +  G
Sbjct: 9   KYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-G 67

Query: 61  PGAEKVKVENKTWKIDAGSRNIDL-ELTTLSSANHVELSPSDAGFQDRYVVQEV--IKEM 117
           P AE         +I+ G   ID+ E+   S                   V ++  I E 
Sbjct: 68  PTAEPCGKCISCKEINEG-SLIDVIEIDAAS----------------NTGVDDIREIIEK 110

Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
               P  ++G+  +KV +++EV  LS++A ++L +T+E+  +  + IL      K+   I
Sbjct: 111 VNYAP--SEGR--YKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA--ILSFETC 235
            SRC          E+I K L  I  KEG+ +     + +A  +  SLR A  +L     
Sbjct: 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLL----- 221

Query: 236 RVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLF------------QVRGKLYEL 283
                    +QAI A    E   E   D++     ++L             +    + EL
Sbjct: 222 ---------DQAI-AFGEGEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINEL 271

Query: 284 LLNCVPPVVVLKRLLYELLKRL 305
           +     P   L+ LL  L   L
Sbjct: 272 IEEGKDPEAFLEDLLNFLRDLL 293

Length = 515

>gnl|CDD|233087 TIGR00678, holB, DNA polymerase III, delta' subunit

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 37/203 (18%)

Query: 35  PH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT---WKIDAGSRNIDLELTTLS 90
            H  LF GP G GK+ L +AL + +        +   +      I+AG            
Sbjct: 14  AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAG------------ 61

Query: 91  SANH---VELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE 145
             NH     L P            V+E+++ +++  P ++    G +V+++ + ++++  
Sbjct: 62  --NHPDLHRLEPEGQSIKVDQ---VRELVEFLSR-TPQES----GRRVVIIEDAERMNEA 111

Query: 146 AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE 205
           A ++L +T+E+   +   IL   S  K+   IRSRC  +     +EE +++ L       
Sbjct: 112 AANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWL------I 165

Query: 206 GLQLPSGFATRLAEKSNRSLRRA 228
              +    A  L   +  S   A
Sbjct: 166 RQGISEEAAELLLALAGGSPGAA 188

This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau [DNA metabolism, DNA replication, recombination, and repair]. Length = 188

>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional

 Score = 72.5 bits (178), Expect = 5e-14
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 32/232 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLR-------Q 57
           KYRPK   +VI  + + + LK  V  Q   H  +F GP G+GK T+   L +       Q
Sbjct: 9   KYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQ 68

Query: 58  VFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKE 116
              P  +    EN   +ID GS   DL          +E+ + S+ G  D       +++
Sbjct: 69  EGEPCGK---CEN-CVEIDKGSF-PDL----------IEIDAASNRGIDD----IRALRD 109

Query: 117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
                PI  KGK  +KV +++E   L++EA ++L +T+E+       ILC     K+   
Sbjct: 110 AVSYTPI--KGK--YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPT 165

Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
           I SRC     + PT+EQI + L+ I  +E ++        LA+ S   +R A
Sbjct: 166 ILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDA 217

Length = 486

>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.8 bits (171), Expect = 4e-13
 Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 22/232 (9%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVF---GP 61
           KYRPKT  +V+    + + +   + +    H  +F GP G+GK T+   L + +      
Sbjct: 7   KYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRK 66

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G E          ID G+    +EL   S+    E+                I++    R
Sbjct: 67  GVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRK--------------IRDAVGYR 112

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P++ K    +KV +++EV  L++EA ++L +T+E+  +    +L   +  KV   I SRC
Sbjct: 113 PMEGK----YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRC 168

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
             I   + ++E I+K L+ +A+ EG+++     + +A++++  LR A+   E
Sbjct: 169 QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLE 220

Length = 472

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 65/280 (23%), Positives = 110/280 (39%), Gaps = 69/280 (24%)

Query: 5   DKYRPKTLDQVIVHQDIAQN---LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           ++ RPK+LD+V+  + +      L++ V       ++ +GPPG+GK TL   +       
Sbjct: 16  ERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLI------- 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                          AG+ N   E           LS   +G +D   ++E+I+E  KNR
Sbjct: 69  ---------------AGTTNAAFE----------ALSAVTSGVKD---LREIIEEARKNR 100

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC----NSSSKVTEAI 177
                G+R   +L L+E+ + ++  Q +L   +E       +IL      N S ++  A+
Sbjct: 101 ---LLGRR--TILFLDEIHRFNKAQQDALLPHVENG----TIILIGATTENPSFELNPAL 151

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA-------TRLAEKSNRSLRRAIL 230
            SR     +   + E I K+L+     E   L              L   SN   RRA+ 
Sbjct: 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALN 211

Query: 231 SFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSP 270
             E             A+ A   E  + E+  +I+Q +S 
Sbjct: 212 LLELA-----------ALSAEPDEVLILELLEEILQRRSA 240

Length = 436

>gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 28/231 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMAL-LRQVFGP 61
           KYRP+T + VI  + I Q LK  +      H  LF GP G+GK ++  I A  L    GP
Sbjct: 7   KYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGP 66

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP-SDAGFQDRYVVQEV--IKEMA 118
             E         +I++GS ++D+          +E+   S+ G      V ++  I +  
Sbjct: 67  DGEPCNECESCKEINSGS-SLDV----------IEIDAASNNG------VDDIREILDNV 109

Query: 119 KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
           K  P   K    +KV +++EV  LS+ A ++L +T+E+       IL      K+   I 
Sbjct: 110 KYAPSSGK----YKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATIL 165

Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           SRC          E IV+ L+ I  KEG+++       +A  ++ SLR A+
Sbjct: 166 SRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDAL 216

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis [DNA metabolism, DNA replication, recombination, and repair]. Length = 355

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 64.0 bits (157), Expect = 3e-11
 Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 54/235 (22%)

Query: 5   DKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           ++ RPKTLD+V+  + +    + L++++       ++ +GPPG+GK TL   +       
Sbjct: 4   ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARII------- 56

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                            +   D             LS   +G +D   ++EVI+E  + R
Sbjct: 57  -----------------AGATDAPF--------EALSAVTSGVKD---LREVIEEARQRR 88

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC----NSSSKVTEAI 177
              + G+R   +L ++E+ + ++  Q +L   +E       + L      N S +V  A+
Sbjct: 89  ---SAGRR--TILFIDEIHRFNKAQQDALLPHVEDG----TITLIGATTENPSFEVNPAL 139

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEG---LQLPSGFATRLAEKSNRSLRRAI 229
            SR     +   +EE I ++L+   + +    ++L       LA  +N   RRA+
Sbjct: 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRAL 194

Length = 413

>gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 40/237 (16%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAE 64
           K+RP+    +I  + I   +   ++     H  L  G  G GK T+              
Sbjct: 9   KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIA------------- 55

Query: 65  KVKVENKTWKIDAGSRNIDLELTTL-----------SSANHVELSPSDAGFQDRYVVQEV 113
                    ++ A S N    +T+                 ++L   DA    R  V+E 
Sbjct: 56  ---------RLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAA--SRTKVEE- 103

Query: 114 IKEMAKN-RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK 172
           ++E+  N     +K +  FKV +++EV  LSR + ++L +T+E+     + IL      K
Sbjct: 104 MREILDNIYYSPSKSR--FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161

Query: 173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           + + I SRCL  ++   +EE+I   L++I  KE +         +A  ++ S+R A+
Sbjct: 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDAL 218

Length = 363

>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 62/230 (26%), Positives = 97/230 (42%), Gaps = 30/230 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP+T D V+    I   L   +        LLF GP G GK T    L R++  PG  
Sbjct: 10  KYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPG-- 67

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD-RYVVQEVIKEMAKNRPI 123
                      D  + +    +  L +A       S+    D R ++ +V       R  
Sbjct: 68  ----------YDDPNEDFSFNIFELDAA-------SNNSVDDIRNLIDQV-------RIP 103

Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
              GK  +K+ +++EV  LS  A ++  +T+E+  A    IL      K+   I SRC  
Sbjct: 104 PQTGK--YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 161

Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
                 T + I + L  IA KEG++        +A+K++ +LR A+  F+
Sbjct: 162 FDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFD 211

Length = 367

>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau; Validated

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 41/239 (17%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALL---- 55
              KYRPKT D ++    I Q LK ++      H  LF GP G+GK ++  I A      
Sbjct: 8   LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67

Query: 56  --RQVFGPGAEKVKVENKTWKI---DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVV 110
               +  P  E ++  N +  I   DA S N                     G  +   +
Sbjct: 68  HKTDLLEPCQECIENVNNSLDIIEMDAASNN---------------------GVDE---I 103

Query: 111 QEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS 170
           +E + E  KN P  +K    +K+ +++EV  LS+ A ++L +T+E+       IL     
Sbjct: 104 RE-LIENVKNLPTQSK----YKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158

Query: 171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            K+   I SR         +E++IV  LEFI +KE +         +A+ S+ SLR A+
Sbjct: 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDAL 217

Length = 725

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 39/177 (22%)

Query: 16  IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI 75
           +  ++  + L++ +      +LL YGPPG+GK TL  A+  ++F PG             
Sbjct: 1   VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPG------------- 47

Query: 76  DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLV 135
                           A  + L+ SD    +  VV E+          +   K    VL 
Sbjct: 48  ----------------APFLYLNASD--LLEGLVVAELFGHFLVRLLFELAEKAKPGVLF 89

Query: 136 LNEVDKLSREAQHSLRRTMEKYS------ASCRLILCCN--SSSKVTEAIRSRCLNI 184
           ++E+D LSR AQ++L R +E  +       + R+I   N      +  A+  R    
Sbjct: 90  IDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIR 146

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 3  WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGK 47
          WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK
Sbjct: 9  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 53

Length = 846

>gnl|CDD|221959 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 19/176 (10%)

Query: 18  HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
              + + LK  + +    H  LF GP G GK  L +   + +F         EN      
Sbjct: 2   QPKVIKLLKNSIKKNKLSHAYLFSGPDGVGKLELALEFAKALFC--------ENPQDDEP 53

Query: 77  AGSRNIDLELTTLSSANHVELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVL 134
            G       +   +  + + + P            ++E+I+E +K +P   +GK+  KV 
Sbjct: 54  CGECKSCKRIENGNHPDVIIIEPEGKSIKIDQ---IRELIEEFSK-KPF--EGKK--KVY 105

Query: 135 VLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPT 190
           ++ + +K++  A ++L +T+E+   +   IL  ++ +K+   IRSRC  I     +
Sbjct: 106 IIEDAEKMTESAANALLKTLEEPPENTYFILLTSNPNKLLPTIRSRCQVINFKPLS 161

DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA. Length = 161

>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 21/230 (9%)

Query: 6   KYRPKTLDQVIVHQDIA-QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGA 63
           KYRP+    VI HQD+A   L+  +      H  +F+GP G GK T+   L        A
Sbjct: 11  KYRPQFFRDVI-HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARIL--------A 61

Query: 64  EKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRP 122
           +++  EN             LE+T   S++ +E+ + S+ G ++       I+E+  N  
Sbjct: 62  KRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIEN-------IRELRDNVK 114

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
               G + +KV +++EV  L+ ++ ++L +T+E+  A    IL      K+ E I SRC 
Sbjct: 115 FAPMGGK-YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF 232
           +          +    E + K E +Q        +A+K + S+R  +LSF
Sbjct: 174 DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRD-MLSF 222

Length = 484

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 23/228 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVF----G 60
           K+R +T  +++  + + Q L+  + E    H  LF GP G GK +    L + V      
Sbjct: 9   KWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTND 68

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P             I  G   +D+     +S   V+    DA           I E  + 
Sbjct: 69  PKGRPCGTCEMCRAIAEG-SAVDVIEMDAASHTSVD----DA---------REIIERVQF 114

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           RP   +    +KV +++EV  LS  A ++L +T+E+       IL      KV   I SR
Sbjct: 115 RPALAR----YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
           C     +  +   +   L  IA  EG+ L  G    +A  +  S+R A
Sbjct: 171 CQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDA 218

Length = 585

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.8 bits (139), Expect = 5e-09
 Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 24/229 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RPKT   ++  + + + L+  + E    H  L  G  G GK T+   L + +      
Sbjct: 9   KWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKN 120
             E   V     +IDAG R +DL          +E+ + S+ G  +   ++EV+ E A+ 
Sbjct: 69  HGEPCGVCQSCTQIDAG-RYVDL----------LEIDAASNTGIDN---IREVL-ENAQY 113

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
            P  T GK  +KV +++EV  LS+ A +++ +T+E+     + IL      KV   + SR
Sbjct: 114 AP--TAGK--YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           CL   + + T +Q+   L  +   E +         L   +  S+R A+
Sbjct: 170 CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDAL 218

Length = 709

>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.1 bits (138), Expect = 6e-09
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 21/227 (9%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP+T  +++    +   LK  +      H  LF G  G+GK TL      ++F   A+
Sbjct: 10  KYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLA-----RIF---AK 61

Query: 65  KVKVENKTWKIDAGSR-NIDLELTTLSSANHVELS-PSDAGFQD-RYVVQEVIKEMAKNR 121
            +  +N T   +  ++     E+++ +S + +E+   S  G +D R + + V+   +K+R
Sbjct: 62  ALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSR 121

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    +K+ +++EV  L++EA +SL +T+E+     +  L      K+   I SRC
Sbjct: 122 ---------YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRC 172

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
             + +    EE I+  L  IAK+EG++        +A  +  SLR A
Sbjct: 173 QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDA 219

Length = 451

>gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 42/242 (17%)

Query: 6   KYRPKTLDQVIVHQDI-------AQNLKKLVTEQDCPHLLFYGPPGSGKKTL--IMAL-L 55
           KYRP +    +V QD+       A  L K+        +L  G  G GK T   I++L L
Sbjct: 6   KYRPSSFKD-LVGQDVLVRILRNAFTLNKIPQS-----ILLVGASGVGKTTCARIISLCL 59

Query: 56  RQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH---VEL-SPSDAGFQDRYVVQ 111
               GP ++             G+ +      ++ ++NH   +E+ + S+    D  V+ 
Sbjct: 60  NCSNGPTSDP-----------CGTCH---NCISIKNSNHPDVIEIDAASNTSVDDIKVIL 105

Query: 112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS 171
           E    +    PI +K    FKV +++EV  LS  A ++L +T+E+ +   + IL      
Sbjct: 106 ENSCYL----PISSK----FKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157

Query: 172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
           K+   I SRC    +     +++V+ L  IAKKE ++        +AE S+ S+R A+  
Sbjct: 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFL 217

Query: 232 FE 233
            E
Sbjct: 218 LE 219

Length = 491

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 28/159 (17%)

Query: 36  HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95
            +L  GPPGSGK TL  AL R++  PG   + +            + +  L  +     +
Sbjct: 4   VILIVGPPGSGKTTLARALARELGPPGGGVIYI------------DGEDILEEVLDQLLL 51

Query: 96  ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR--- 152
            +           +   +   +A+    D        VL+L+E+  L    Q +L     
Sbjct: 52  IIVGGKKASGSGELRLRLALALARKLKPD--------VLILDEITSLLDAEQEALLLLLE 103

Query: 153 -----TMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRI 186
                 + K   +  +IL  N    +  A+  R  + RI
Sbjct: 104 ELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRI 142

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 24/233 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKT---LIMALLRQVFGP 61
           KYRP+T   +   + +++ L+  +      H  LF G  G GK +   ++   L    G 
Sbjct: 9   KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGL 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKN 120
            AE   V     +I  G            S +  E+   S+ G  D   ++E ++E  K 
Sbjct: 69  TAEPCNVCPPCVEITEGR-----------SVDVFEIDGASNTGVDD---IRE-LRENVKY 113

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
            P     +  +K+ +++EV  LS  A ++L +T+E+     + I       KV   I SR
Sbjct: 114 LP----SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
           C          ++IV  L +IA +EG+ +       +A K + S+R ++ + +
Sbjct: 170 CQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLD 222

Length = 576

>gnl|CDD|184922 PRK14958, PRK14958, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.2 bits (127), Expect = 9e-08
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 18/226 (7%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           K+RP+   +VI    + + L   + +Q   H  LF G  G GK T+   L          
Sbjct: 9   KWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRIL---------- 58

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP-I 123
             K  N    + A   N       +      +L   DA  + +    E  +E+  N P  
Sbjct: 59  -AKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKV---EDTRELLDNIPYA 114

Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
            TKG+  FKV +++EV  LS  + ++L +T+E+  +  + IL      K+   + SRCL 
Sbjct: 115 PTKGR--FKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQ 172

Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             +      QI    + + K+E ++  +     LA  +N S+R A+
Sbjct: 173 FHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDAL 218

Length = 509

>gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 28/274 (10%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP++  +V   Q    +L   +  Q   H  LF G  G GK TL   L + +      
Sbjct: 9   KYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGV 68

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN-RPI 123
             +  NK     A + N  ++L  + +A+             R  V+E  KE+  N + +
Sbjct: 69  TAEPCNKCENCVAINNNSFIDLIEIDAAS-------------RTGVEET-KEILDNIQYM 114

Query: 124 DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
            ++G+  +KV +++EV  LS+++ ++L +T+E+     + IL      K+   I SRC+ 
Sbjct: 115 PSQGR--YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172

Query: 184 IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI------LSFETCRV 237
           + +   ++  I   L+ I  KE +         +A  +  SLR A+      +SF    +
Sbjct: 173 LHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGEL 232

Query: 238 QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPK 271
           +Q   K  Q +  +D EE V+ I + I+ +  PK
Sbjct: 233 KQAQIK--QMLGIIDSEE-VYSIINAII-DNDPK 262

Length = 546

>gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 16/230 (6%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLK-KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +  KYRP    ++   + + + L   ++ ++     L  G  G GK T    + + V   
Sbjct: 11  FARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV--- 67

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--IKEMAK 119
               +  EN T K      N      + ++ NH ++   DA    +  V ++  I E A+
Sbjct: 68  NCSALITENTTIKTCEQCTNC----ISFNNHNHPDIIEIDAA--SKTSVDDIRRIIESAE 121

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
            +P+  K     K+ +++EV  LS+ A ++L +T+E+       I       K+   I S
Sbjct: 122 YKPLQGK----HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIIS 177

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           RC    +   + E+I K+LE+I K+E L+        +A KS  S R A+
Sbjct: 178 RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAV 227

Length = 507

>gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 40/191 (20%), Positives = 90/191 (47%), Gaps = 33/191 (17%)

Query: 15  VIVHQDIAQNLKKLVTEQDCPHL-LFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW 73
           +I H++I   +K  + +    H  +  G  G GK  L   +  ++ G   ++  V+   +
Sbjct: 6   IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEF 65

Query: 74  KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKV 133
           K     ++I ++                        ++ +I+E+ K +P +  G +  KV
Sbjct: 66  KP-INKKSIGVDD-----------------------IRNIIEEVNK-KPYE--GDK--KV 96

Query: 134 LVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
           +++   +K++ +AQ++  +T+E+      +IL C +  ++ + I+SRC   ++N  ++E+
Sbjct: 97  IIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEE 156

Query: 194 IVKVLEFIAKK 204
           I K   FI+ K
Sbjct: 157 IEK---FISYK 164

Length = 313

>gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 22/228 (9%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA-LLRQVFGP 61
           K+RPK+  +++  + + + L   + +Q   H  LF G  G GK TL  I+A  L    G 
Sbjct: 9   KWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGV 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +ID+G R +DL          +E+   DA    +      + + A+  
Sbjct: 69  TATPCGVCSACLEIDSG-RFVDL----------IEV---DAASNTQVDAMRELLDNAQYA 114

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           P  T+G+  FKV +++EV  LS+ A +++ +T+E+     + IL      K+   + SRC
Sbjct: 115 P--TRGR--FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 170

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   +       IV  L+ I ++E +   +     LA  +  S+R A+
Sbjct: 171 LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDAL 218

Length = 527

>gnl|CDD|203973 pfam08542, Rep_fac_C, Replication factor C C-terminal domain

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 252 DW--EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR-LDAE 308
            W   E + EI   I++        + R  LYELL+  +    +LK+L   L++  +   
Sbjct: 1   GWPPPEDIKEILDSILKG----DFDEARETLYELLVEGISAEDILKQLHEVLIRLDIPDS 56

Query: 309 IKHEVCHWAAYY 320
           +K E+    A  
Sbjct: 57  LKLEIIKELAEI 68

This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A. Length = 89

>gnl|CDD|181551 PRK08769, PRK08769, DNA polymerase III subunit delta'; Validated

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 37  LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96
           LL  GP G GK+ + +AL   V   G +      +T ++ A   + DL+L        V 
Sbjct: 29  LLICGPEGLGKRAVALALAEHVLASGPDPA-AAQRTRQLIAAGTHPDLQL--------VS 79

Query: 97  LSPSDAGFQDRY-VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME 155
             P+  G + R  +V E ++E+++   + T      +V++++  D ++R A ++L +T+E
Sbjct: 80  FIPNRTGDKLRTEIVIEQVREISQKLAL-TPQYGIAQVVIVDPADAINRAACNALLKTLE 138

Query: 156 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ 193
           + S    L L     +++   IRSRC  +    P   +
Sbjct: 139 EPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHE 176

Length = 319

>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 56/242 (23%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGK--------KTLIMALLR 56
           KYRPK  D++I  + +++ L   +      H  LF G  GSGK        + L+     
Sbjct: 7   KYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQ-- 64

Query: 57  QVFGPGAEKVKV--------ENKTWKI---DAGS-RNIDLELTTLSSANHVELSPSDAGF 104
              GP +             EN+   I   DA S R ID                     
Sbjct: 65  ---GPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGID--------------------- 100

Query: 105 QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLI 164
            D   ++E+I E  K +P  +  +  FK+ +++EV  L++EA ++L +T+E+  +  + I
Sbjct: 101 -D---IRELI-EQTKYKP--SMAR--FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151

Query: 165 LCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS 224
           L      K+   I SR  + R     +  I+  L+ I +KEG+         LA   N S
Sbjct: 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGS 211

Query: 225 LR 226
           LR
Sbjct: 212 LR 213

Length = 535

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQV---FGP 61
           +YRP+T  +V   + +   L +   E    P  LF G  G GK T+     + +     P
Sbjct: 9   RYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAP 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL----SPSDAGFQDRYVVQEVIKEM 117
             E      +  K+  G               HV++      S+ G  D   ++E I   
Sbjct: 69  TGEPCNTCEQCRKVTQG--------------MHVDVVEIDGASNRGIDDAKRLKEAIGYA 114

Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
               P++ +    +KV +++E   L+REA ++L +T+E+  A    +L      K    I
Sbjct: 115 ----PMEGR----YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
            SRC +      +E  +   L  +  +EG+         +A ++  S+R ++
Sbjct: 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSM 218

Length = 624

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 45/244 (18%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPG 62
           KYRP T + V+  + +   LK  +      H  LF GP G GK T   I A         
Sbjct: 10  KYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT 69

Query: 63  AE----------KVKVENKTWKI---DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV 109
           A+              E +++ I   DA S N   ++  L     +E        Q R  
Sbjct: 70  ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNL-----IE--------QVRIP 116

Query: 110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS 169
            Q               GK  +K+ +++EV  LS+ A ++  +T+E+  +    IL    
Sbjct: 117 PQ--------------IGK--YKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160

Query: 170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             K+   I SRC     N      IV  L+++A KEG+         +A+K++  +R A+
Sbjct: 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDAL 220

Query: 230 LSFE 233
             F+
Sbjct: 221 SIFD 224

Length = 614

>gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP 189
           G+++ V+   D ++  A ++L +T+E+ + +C  +L  ++  ++   I SRC    +  P
Sbjct: 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPP 167

Query: 190 TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS 221
           +  Q ++ L    K +G+ +P+ +A +L   S
Sbjct: 168 STAQAMQWL----KGQGITVPA-YALKLNMGS 194

Length = 319

>gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 25/234 (10%)

Query: 9   PKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVK 67
           P    ++  H++    L +   E    H LLF GP G GK TL   L   +     +  +
Sbjct: 19  PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHP-DPAE 77

Query: 68  VENKTWKIDAGS---RNIDLELTTLSSANHVELS-PSD---AGFQDRYVVQEVIKEMAK- 119
                   D  S   R I       +  N + ++ P D     F+    V E I+ +   
Sbjct: 78  APETLADPDPASPVWRQI----AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHF 132

Query: 120 -NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
            ++   T G   +++++++  D ++R A +++ +T+E+  A    IL  +SS ++   IR
Sbjct: 133 LSQ---TSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIR 189

Query: 179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR--LAEKSNRSLRRAIL 230
           SRC  I +    ++++ K L  +    G    S       L ++S  S+R+A+L
Sbjct: 190 SRCQPISLKPLDDDELKKALSHL----GSSQGSDGEITEALLQRSKGSVRKALL 239

Length = 351

>gnl|CDD|223546 COG0470, HolB, ATPase involved in DNA replication [DNA replication, recombination, and repair]

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR 216
              + R IL  N  SK+   IRSRC  IR   P        LE IA  E   L       
Sbjct: 41  PPKNTRFILITNDPSKILPTIRSRCQRIRFKPP------SRLEAIAWLEDQGL-----EE 89

Query: 217 LAEKSNRSLRRAILSFETCRVQQ 239
           +A  +    R+AI   +     +
Sbjct: 90  IAAVAEGDARKAINPLQALAALE 112

Length = 230

>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed

 Score = 45.1 bits (108), Expect = 3e-05
 Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 16/72 (22%)

Query: 8  RPKTLDQVIVHQDIAQNLK------KLVTEQ-DCPHLLFYGPPGSGKKTL--IMAL---- 54
          RPK+LD+ I  + + +NLK      K   E  D  H+L YGPPG GK TL  I+A     
Sbjct: 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALD--HVLLYGPPGLGKTTLANIIANEMGV 77

Query: 55 -LRQVFGPGAEK 65
           +R   GP  EK
Sbjct: 78 NIRITSGPALEK 89

Length = 328

>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 16/72 (22%)

Query: 8  RPKTLDQVIVHQDIAQNLK------KLVTEQ-DCPHLLFYGPPGSGKKTL--IMAL---- 54
          RPKTLD+ I  + + + L+      K   E  D  H+L +GPPG GK TL  I+A     
Sbjct: 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALD--HVLLFGPPGLGKTTLAHIIANELGV 78

Query: 55 -LRQVFGPGAEK 65
           L+   GP  EK
Sbjct: 79 NLKITSGPALEK 90

Length = 332

>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 2   LWVDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQDCPH--LLFYGPPGSGKKTLIMAL 54
            WV+KY+P+T  ++ VH+    ++   LK  V E   P   LL  GP G GK T I  L
Sbjct: 73  PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENA-PKRILLITGPSGCGKSTTIKIL 130

All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 637

>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 20/224 (8%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP    Q+I  + I + L   +      H  +F GP G GK ++            A+
Sbjct: 9   KYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIF--------AK 60

Query: 65  KVKVENKTWKIDA-GSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQEVIKEMAKNRP 122
            +   N     D   S ++   + T  S + VEL + S+ G  +   ++ +I +     P
Sbjct: 61  AINCLNPK-DGDCCNSCSVCESINTNQSVDIVELDAASNNGVDE---IRNII-DNINYLP 115

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
              K    +KV +++E   LS  A ++L +T+E+       I       K+   I SRC 
Sbjct: 116 TTFK----YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQ 171

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR 226
                     ++ ++L+ IAKKE +++      ++A+ ++ SLR
Sbjct: 172 RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLR 215

Length = 605

>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 26/230 (11%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAE 64
           KYRP+  ++++    +++ L   +      H  LF G  G GK T+              
Sbjct: 8   KYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTI-------------- 53

Query: 65  KVKVENKTWKIDAGSRNIDLEL-TTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKN 120
             ++  K    + G  +   E+  T  + N    ++L   DA  + +    E  +E+  N
Sbjct: 54  -ARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKV---EDTRELLDN 109

Query: 121 RP-IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
            P   T+G+  FKV +++EV  LS  + ++L +T+E+     + +       K+   + S
Sbjct: 110 VPYAPTQGR--FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS 167

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           RCL   +     ++I K L  I +KE +        ++AE +  SLR A+
Sbjct: 168 RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDAL 217

Length = 702

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 55/169 (32%)

Query: 37  LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96
           LL YGPPG+GK TL  A+ ++                                  A  +E
Sbjct: 1   LLLYGPPGTGKTTLAKAVAKE--------------------------------LGAPFIE 28

Query: 97  LSPSDAGFQDRYVVQEVIKEMAKN--RPIDTKGKRGFKVLVLNEVDKL-----------S 143
           +S S+       +V + + E  K      +   K    V+ ++E+D L           S
Sbjct: 29  ISGSE-------LVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSES 81

Query: 144 REAQHSLRRTMEKYSASCR---LILCCNSSSKVTEAIRSRCLNIRINSP 189
           R   + L   ++ +++S     +I   N   K+  A+     +  I  P
Sbjct: 82  RRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRIIEFP 130

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 2  LWVDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQDCPHLLFY--GPPGSGKKTLIMAL 54
          LW +KY+P+  D++ +H+    ++   LK +  E +   L+    GP G GK T +  L
Sbjct: 8  LWTEKYKPRRRDELAIHKKKIAEVDHWLKAVFLESN-KQLILLLTGPSGCGKSTTVKVL 65

Length = 490

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 35/240 (14%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPGAE 64
           RP T D+V+  + + + L   + +    H  LF GP G GK T   ++A+     G   +
Sbjct: 9   RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPK 68

Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
                     +  G+    LE+   +S N VE         D   V++ ++E     P+ 
Sbjct: 69  PCGECESCLAVRRGAHPDVLEIDA-ASNNSVE---------D---VRD-LREKVLLAPL- 113

Query: 125 TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI 184
              + G KV +L+E   +S+ A ++L +T+E+       IL      K+   I SR  + 
Sbjct: 114 ---RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHF 170

Query: 185 RINSPTEEQIVKVLEFIAKKEG-------LQLPSGFATRLAEKSNR---SLRRAILSFET 234
           R    TEE+I   L  + + EG       LQL      RLA+ + R   SL   +L+  T
Sbjct: 171 RFRRLTEEEIAGKLRRLLEAEGREAEPEALQL----VARLADGAMRDAESLLERLLALGT 226

Length = 504

>gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 30/236 (12%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMAL---LRQVFGP 61
           K RP+  + +     + + LK  +      +  +F GP G GK +   A    L  V GP
Sbjct: 9   KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS-PSDAGFQD-RYVVQEVIKEMAK 119
                   +    ID  +           S + +E+   S+   QD R + +E++   A 
Sbjct: 69  TPMPCGECSSCKSIDNDN-----------SLDVIEIDGASNTSVQDVRQIKEEIMFPPAS 117

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
           +R         ++V +++EV  LS  A ++L +T+E+       I       K+   I+S
Sbjct: 118 SR---------YRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168

Query: 180 RC--LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
           RC   N R+ S   E+I  +L+ +  ++ ++        +A KS  S+R A   F+
Sbjct: 169 RCQHFNFRLLSL--EKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFD 222

Length = 563

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 31/235 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPG 62
           K+RP+    ++  + + + L   + +Q   H  LF G  G GK TL  I+A      G  
Sbjct: 9   KWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGAD 68

Query: 63  ------AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE 116
                 A+         +IDAG R +D          ++E+   DA   +R V      E
Sbjct: 69  GEGGITAQPCGQCRACTEIDAG-RFVD----------YIEM---DAA-SNRGV-----DE 108

Query: 117 MAK--NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
           MA+  ++ +       FKV +++EV  L+  A +++ +T+E+     + IL      K+ 
Sbjct: 109 MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168

Query: 175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             + SRCL   +       IV  L+ I  +EG+         LA+ +  S+R A+
Sbjct: 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDAL 223

Length = 700

>gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 16/72 (22%)

Query: 8  RPKTLDQVIVHQDIAQNLK------KLVTEQ-DCPHLLFYGPPGSGKKTL--IMAL---- 54
          RP+ LD+ I  + + +NLK      K   E  D  H+L YGPPG GK TL  I+A     
Sbjct: 19 RPRRLDEYIGQEKVKENLKIFIEAAKKRGEALD--HVLLYGPPGLGKTTLANIIANEMGV 76

Query: 55 -LRQVFGPGAEK 65
           +R   GP  EK
Sbjct: 77 NIRITSGPALEK 88

The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 23/136 (16%)

Query: 32  QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK-TWKIDAGSRNIDLELTTLS 90
           +     +  G  GSGK TL+  L RQ+       V+  +  T K        DL L  + 
Sbjct: 2   RGAGIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTPK--------DL-LRKIL 52

Query: 91  SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSL 150
            A  + LS             E+++ +     +D   +RG  +L+++E   LS EA   L
Sbjct: 53  RALGLPLSGGTT--------AELLEAI-----LDALKRRGRPLLIIDEAQHLSLEALEEL 99

Query: 151 RRTMEKYSASCRLILC 166
           R   +      ++IL 
Sbjct: 100 RDLYDLSEKGIQVILV 115

Length = 124

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 35/237 (14%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMALLRQVFGPG 62
           KYRP++  +++  + + Q L   +T+Q   H  LF G  G GK T+  I+A      GP 
Sbjct: 9   KYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPD 68

Query: 63  ------AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--I 114
                 A    V      ID+G R +D   T L +A       S+ G      V EV  +
Sbjct: 69  GQGGITATPCGVCQACRDIDSG-RFVD--YTELDAA-------SNRG------VDEVQQL 112

Query: 115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
            E A  +P+  +    FKV +++EV  L+  A +++ +T+E+     + +L      KV 
Sbjct: 113 LEQAVYKPVQGR----FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168

Query: 175 EAIRSRCL--NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             + SRCL  N+R  +P  E +++ L  +   E +         LA  +  S+R A+
Sbjct: 169 VTVLSRCLQFNLRPMAP--ETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDAL 223

Length = 618

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 129 RG-FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRIN 187
           RG FKV +++EV  LSR + ++L +T+E+     + +L      K+   + SRCL   + 
Sbjct: 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLK 176

Query: 188 SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
           S T+++I   L  I  +E L   +   T LA+ +N S+R A LS
Sbjct: 177 SLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDA-LS 219

Length = 944

>gnl|CDD|236022 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP 189
           G++V++++  D+++  A ++L + +E+  A    +L  ++ +++   IRSRC  +R+   
Sbjct: 141 GWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPL 200

Query: 190 TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             E ++  L       G  LP      LA  +  S+ RA+
Sbjct: 201 APEDVIDALA----AAGPDLPDDPRAALAALAEGSVGRAL 236

Length = 365

>gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 114 IKEM------AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC 167
           + E+      A  RP  + G+  ++++V+ + D+L+  A ++L + +E+       +LC 
Sbjct: 99  VDEVRELVTIAARRP--STGR--WRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154

Query: 168 NSSSKVTEAIRSRCLNIRINSPTEEQIVKVL 198
            S   V   IRSRC ++ + +P+ E + +VL
Sbjct: 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVL 185

Length = 394

>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 13/79 (16%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLVTEQDCP---HLLFYGPPGSGKKTLIMALLRQV------ 58
           RP+   + IV Q+ A  +K L+ +   P   H++ YGPPG GK T     L +       
Sbjct: 149 RPRAFSE-IVGQERA--IKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHT 205

Query: 59  -FGPGAEKVKVENKTWKID 76
            F   A  V+V+  T + D
Sbjct: 206 PFAEDAPFVEVDGTTLRWD 224

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]. Length = 615

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 6  KYRPKTLDQVIVHQD-IAQNLKK-LVTEQDCPHLLFYGPPGSGK 47
          KYRP+  D++ V Q+ IA  LK  L++ +  P  LF GP G+GK
Sbjct: 9  KYRPQRFDEL-VGQEAIATTLKNALISNRIAPAYLFTGPRGTGK 51

Length = 620

>gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 126 KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR 185
           KG+  ++V +++EV  LS  A ++  +T+E+       I       K+   I SRC    
Sbjct: 125 KGR--YRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFN 182

Query: 186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA 228
                 E+I + L+ I + EG+ + +     +  K+  S+R A
Sbjct: 183 FKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDA 225

Length = 397

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	100.0
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	100.0
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	100.0
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	100.0
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	100.0
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	100.0
PLN03025	319	replication factor C subunit; Provisional	100.0
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	100.0
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	100.0
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	100.0
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	100.0
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK12402	337	replication factor C small subunit 2; Reviewed	100.0
PRK00440	319	rfc replication factor C small subunit; Reviewed	100.0
COG2256	436	MGS1 ATPase related to the helicase subunit of the	100.0
PRK04195	482	replication factor C large subunit; Provisional	100.0
PHA02544	316	44 clamp loader, small subunit; Provisional	100.0
PRK13342	413	recombination factor protein RarA; Reviewed	100.0
PRK13341	725	recombination factor protein RarA/unknown domain f	100.0
PRK04132	846	replication factor C small subunit; Provisional	99.98
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.97
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	99.97
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.97
KOG2028	554	consensus ATPase related to the helicase subunit o	99.97
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.97
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.96
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.96
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.96
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.96
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.96
PRK07993	334	DNA polymerase III subunit delta'; Validated	99.96
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.95
KOG1969	877	consensus DNA replication checkpoint protein CHL12	99.94
PRK06090	319	DNA polymerase III subunit delta'; Validated	99.94
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.94
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.94
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.93
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.93
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.92
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.92
PRK07276	290	DNA polymerase III subunit delta'; Validated	99.92
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.92
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.91
PRK05917	290	DNA polymerase III subunit delta'; Validated	99.9
PRK08699	325	DNA polymerase III subunit delta'; Validated	99.9
PRK05818	261	DNA polymerase III subunit delta'; Validated	99.9
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	99.89
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.89
PRK12422	445	chromosomal replication initiation protein; Provis	99.89
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.88
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.87
PRK07132	299	DNA polymerase III subunit delta'; Validated	99.87
PRK08084	235	DNA replication initiation factor; Provisional	99.87
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.86
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.86
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.86
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.86
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.85
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	99.85
PRK08727	233	hypothetical protein; Validated	99.85
PRK06893	229	DNA replication initiation factor; Validated	99.85
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.83
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	99.83
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.83
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.81
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.81
CHL00181	287	cbbX CbbX; Provisional	99.8
PRK06620	214	hypothetical protein; Validated	99.8
PRK05642	234	DNA replication initiation factor; Validated	99.8
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.8
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.79
PRK06581	263	DNA polymerase III subunit delta'; Validated	99.78
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.78
PRK09087	226	hypothetical protein; Validated	99.77
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.77
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.77
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.76
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.75
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.74
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.7
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.69
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.69
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.69
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.69
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.69
CHL00176	638	ftsH cell division protein; Validated	99.68
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.67
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.66
CHL00195	489	ycf46 Ycf46; Provisional	99.66
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.65
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.65
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.65
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.64
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.64
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.63
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.63
PRK08487	328	DNA polymerase III subunit delta; Validated	99.62
PRK10865	857	protein disaggregation chaperone; Provisional	99.62
TIGR01128	302	holA DNA polymerase III, delta subunit. subunit ar	99.62
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.61
PRK07914	320	hypothetical protein; Reviewed	99.61
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.61
PRK07452	326	DNA polymerase III subunit delta; Validated	99.6
PRK08485	206	DNA polymerase III subunit delta'; Validated	99.6
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	99.6
CHL00095	821	clpC Clp protease ATP binding subunit	99.6
PRK05907	311	hypothetical protein; Provisional	99.6
PRK05574	340	holA DNA polymerase III subunit delta; Reviewed	99.6
PRK05629	318	hypothetical protein; Validated	99.6
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.59
CHL00095	821	clpC Clp protease ATP binding subunit	99.59
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.59
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	99.59
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.58
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.58
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.58
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.57
PRK06585	343	holA DNA polymerase III subunit delta; Reviewed	99.57
PRK10865	857	protein disaggregation chaperone; Provisional	99.56
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.56
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	99.56
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.56
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.55
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.55
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.55
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.54
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.54
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.53
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.51
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	99.5
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.5
PRK14700	300	recombination factor protein RarA; Provisional	99.48
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.48
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	99.48
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	99.48
PF00004	132	AAA: ATPase family associated with various cellula	99.46
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.46
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	99.46
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	99.45
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.45
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.45
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.44
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.44
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.43
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.43
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.43
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.42
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	99.41
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.41
KOG2680	454	consensus DNA helicase TIP49, TBP-interacting prot	99.4
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.4
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.39
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	99.39
PRK13531	498	regulatory ATPase RavA; Provisional	99.39
CHL00206	2281	ycf2 Ycf2; Provisional	99.38
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.38
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.37
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.37
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.36
COG2204	464	AtoC Response regulator containing CheY-like recei	99.35
KOG1514	767	consensus Origin recognition complex, subunit 1, a	99.35
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.34
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.34
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.34
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.33
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.33
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.33
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.33
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.31
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.3
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	99.3
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.28
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.28
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.27
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.27
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.27
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.27
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.26
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.25
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.24
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	99.22
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.21
PHA02244	383	ATPase-like protein	99.2
COG1466	334	HolA DNA polymerase III, delta subunit [DNA replic	99.2
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.19
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.18
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.17
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	99.17
COG0714	329	MoxR-like ATPases [General function prediction onl	99.16
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.14
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.13
PRK12377	248	putative replication protein; Provisional	99.13
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.13
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.12
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.12
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.12
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	99.12
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.11
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.1
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.1
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.1
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.1
smart00350	509	MCM minichromosome maintenance proteins.	99.09
PRK07952	244	DNA replication protein DnaC; Validated	99.09
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.09
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	99.08
PRK08116	268	hypothetical protein; Validated	99.08
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.07
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.07
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.06
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	99.06
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.06
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.06
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	99.05
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.05
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.05
PRK15115	444	response regulator GlrR; Provisional	99.04
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.04
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.03
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.03
PRK08181	269	transposase; Validated	99.03
PRK13765	637	ATP-dependent protease Lon; Provisional	99.02
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.02
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	99.02
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.01
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.01
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.01
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.99
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.99
PRK09862	506	putative ATP-dependent protease; Provisional	98.99
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.98
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.98
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.98
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.98
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.98
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.98
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.98
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.97
PF07726	131	AAA_3: ATPase family associated with various cellu	98.97
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.97
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.97
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.96
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.96
cd03246	173	ABCC_Protease_Secretion This family represents the	98.95
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.95
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.95
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.95
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.95
PRK06526	254	transposase; Provisional	98.95
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.95
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.94
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.94
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	98.94
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.94
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.94
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	98.94
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.93
PRK10908	222	cell division protein FtsE; Provisional	98.93
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.93
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.93
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.93
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.92
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.92
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.91
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.91
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.91
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.91
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.91
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	98.91
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.9
smart00382	148	AAA ATPases associated with a variety of cellular	98.9
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.9
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.9
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.89
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.89
PF13173	128	AAA_14: AAA domain	98.89
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.89
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.89
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.89
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.89
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.88
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.88
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.87
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.87
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.87
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.87
PRK10365	441	transcriptional regulatory protein ZraR; Provision	98.87
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.86
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.86
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.86
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.86
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.86
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.85
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.85
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.85
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.85
PRK06921	266	hypothetical protein; Provisional	98.84
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.84
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.84
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	98.84
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.84
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.84
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.84
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.83
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.83
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.83
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	98.83
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.83
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.83
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.83
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.83
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.82
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.82
COG0606	490	Predicted ATPase with chaperone activity [Posttran	98.82
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.82
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.82
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.81
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.81
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.81
PRK06835	329	DNA replication protein DnaC; Validated	98.81
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.81
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.81
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.81
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.81
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.81
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.8
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.8
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.8
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.8
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.8
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.8
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.8
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.8
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.79
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.79
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.79
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.78
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.78
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.78
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.77
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.77
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.77
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.77
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.76
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.76
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.76
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.76
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.76
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.76
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.75
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.75
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.74
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.74
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.74
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.74
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.74
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.74
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.74
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.74
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.74
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.73
PRK04132	846	replication factor C small subunit; Provisional	98.73
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.73
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.72
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.72
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.72
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.72
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.72
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.72
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.72
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.72
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	98.71
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.71
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.71
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.71
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.71
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.71
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.71
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.71
PRK08939	306	primosomal protein DnaI; Reviewed	98.71
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.71
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.71
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.7
PF06144	172	DNA_pol3_delta: DNA polymerase III, delta subunit;	98.7
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.7
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.7
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.7
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.7
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.69
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.69
PRK09183	259	transposase/IS protein; Provisional	98.69
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.69
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	98.69
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.69
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.68
PHA00729	226	NTP-binding motif containing protein	98.68
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.68
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.68
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.68
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.68
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.67
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.67
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.67
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.67
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.67
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.66
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.66
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.66
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
PF05729	166	NACHT: NACHT domain	98.66
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.66
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.65
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.65
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.65
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.65
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.64
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.64
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.64
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.64
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.64
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.64
PRK10536	262	hypothetical protein; Provisional	98.63
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.63
PRK04841	903	transcriptional regulator MalT; Provisional	98.63
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.63
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.63
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.63
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.63
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.62
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.62
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.62
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.62
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.62
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.62
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.62
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.62
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.61
COG1123	539	ATPase components of various ABC-type transport sy	98.61
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.61
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.61
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.6
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.6
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	98.6
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.6
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.6
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.6
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.59
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.59
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.59
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.58
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.58
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.58
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.58
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.58
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.57
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.57
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.56
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.56
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.56
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.56
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.56
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.55
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.55

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=100.00  E-value=1.9e-57  Score=383.73  Aligned_cols=323  Identities=54%  Similarity=0.910  Sum_probs=312.1

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      |+|++||||++++.++++++....++.....+.+||+++|||+|+||-|.+.++.+++++++.....+..+.| .+|.++
T Consensus         1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~-~tpS~k   79 (351)
T KOG2035|consen    1 MLWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF-TTPSKK   79 (351)
T ss_pred             CcchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE-ecCCCc
Confidence            8999999999999999999999999999888999999999999999999999999999999999999999999 899999


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                      ..++  ...++++|++++|++.|.+++..++++++++++..++...++..++|++|.|+|.|+.++|.+|.++||.+..+
T Consensus        80 klEi--stvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~  157 (351)
T KOG2035|consen   80 KLEI--STVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN  157 (351)
T ss_pred             eEEE--EEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence            8999  99999999999999999999999999999999999988778889999999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      +++|++||..+++.++|+|||..++++.|+++++..++.+++.++|+.++.+.+..|++.++||+|+|+-+|+.++..+.
T Consensus       158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~  237 (351)
T KOG2035|consen  158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE  237 (351)
T ss_pred             ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCC-CCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017844          241 PFKDN-QAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAY  319 (365)
Q Consensus       241 ~~~~~-~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~~  319 (365)
                      ..+.+ ..+..+||+..+.++++.|.+++++..+.++++.+|+|+.++++|..|+..+.++|+.+.+...+.++.+++++
T Consensus       238 ~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~~~d~~~k~~~~~~Aa~  317 (351)
T KOG2035|consen  238 PFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLLKCDTQLKLEVIQHAAK  317 (351)
T ss_pred             cccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            77766 57889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHH
Q 017844          320 YVSISFQ  326 (365)
Q Consensus       320 ~~~~~~~  326 (365)
                      |+||++.
T Consensus       318 yEhRl~l  324 (351)
T KOG2035|consen  318 YEHRLRL  324 (351)
T ss_pred             HHHHHhh
Confidence            9999764

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=8.6e-48  Score=368.66  Aligned_cols=334  Identities=19%  Similarity=0.243  Sum_probs=273.0

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+++++.|++++..++.+| +||+||+|+||||+|+.+|+.++|.....         ..||+.
T Consensus         5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pCg~   75 (509)
T PRK14958          5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS---------ANPCND   75 (509)
T ss_pred             hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------cccCCC
Confidence            59999999999999999999999999999999999 89999999999999999999998865321         467777


Q ss_pred             ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.+   +++.+.+.  .....++++++.+.. .+    ..++++|+||||+|+|+.+++++|+++||++
T Consensus        76 C~~C--~~i~~g~~~d~~eidaas~--~~v~~iR~l~~~~~~-~p----~~~~~kV~iIDE~~~ls~~a~naLLk~LEep  146 (509)
T PRK14958         76 CENC--REIDEGRFPDLFEVDAASR--TKVEDTRELLDNIPY-AP----TKGRFKVYLIDEVHMLSGHSFNALLKTLEEP  146 (509)
T ss_pred             CHHH--HHHhcCCCceEEEEccccc--CCHHHHHHHHHHHhh-cc----ccCCcEEEEEEChHhcCHHHHHHHHHHHhcc
Confidence            7666  55544444   44544322  222346666655443 22    3568899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.+++||++|+++.+++++|+|||..++|.+++.+++.+++.+++.++|+.++++++..|++.++||+|.|++++++++.
T Consensus       147 p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia  226 (509)
T PRK14958        147 PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIA  226 (509)
T ss_pred             CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             cC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------hC
Q 017844          238 QQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK---------RL  305 (365)
Q Consensus       238 ~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~---------~~  305 (365)
                      ++ +.++.++  .+.+...+..++++++++..+    +...+...+.+++..|.++..++.++...+.+         .+
T Consensus       227 ~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~~----d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~  302 (509)
T PRK14958        227 YGNGKVLIADVKTMLGTIEPLLLFDILEALAAK----AGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEAL  302 (509)
T ss_pred             cCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc
Confidence            64 3455443  334556678899999999874    34556667788889999999999998887776         12


Q ss_pred             CHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844          306 DAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS  358 (365)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (365)
                      .......+..++..++....+.+|++.+... ..++.+.+|+. +||+||||++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~  355 (509)
T PRK14958        303 IENDSEQLRQLAKLLDREDVQLFYQIGLIGQ-RDLAYSPTPQTGFEMTLLRMLA  355 (509)
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhccCCChhHHHHHHHHHHHh
Confidence            2334567888888888888888888866554 46666666766 9999999996

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=3.4e-47  Score=366.50  Aligned_cols=336  Identities=17%  Similarity=0.227  Sum_probs=266.4

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+++++.|++++..++++| +||+||+|+||||+++.+++.++|.....         ..||+.
T Consensus         5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~---------~~PCG~   75 (830)
T PRK07003          5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT---------SQPCGV   75 (830)
T ss_pred             hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC---------CCCCcc
Confidence            48999999999999999999999999999999999 89999999999999999999998864211         346666


Q ss_pred             ceecccccccccc---ceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSAN---HVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.   ++++...+.  .....++++++... ..+    ..++++|+||||+|+|+..++|.|+++||++
T Consensus        76 C~sC--r~I~~G~h~DviEIDAas~--rgVDdIReLIe~a~-~~P----~~gr~KVIIIDEah~LT~~A~NALLKtLEEP  146 (830)
T PRK07003         76 CRAC--REIDEGRFVDYVEMDAASN--RGVDEMAALLERAV-YAP----VDARFKVYMIDEVHMLTNHAFNAMLKTLEEP  146 (830)
T ss_pred             cHHH--HHHhcCCCceEEEeccccc--ccHHHHHHHHHHHH-hcc----ccCCceEEEEeChhhCCHHHHHHHHHHHHhc
Confidence            6555  4444333   344444322  12234666665543 223    2567899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.+++||++|++..+++++|+|||+.++|.+++.+++.++|++++.++|+.++++++..|++.++||+|+++++++++..
T Consensus       147 P~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia  226 (830)
T PRK07003        147 PPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIA  226 (830)
T ss_pred             CCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887665


Q ss_pred             cC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h------
Q 017844          238 QQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R------  304 (365)
Q Consensus       238 ~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~------  304 (365)
                      ++ +.++.+.  .+.+......++++++.++.+    +..++...+.++...|.+...++.+|...+.+    .      
T Consensus       227 ~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~~----d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~  302 (830)
T PRK07003        227 YSANEVTETAVSGMLGALDQTYMVRLLDALAAG----DGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASV  302 (830)
T ss_pred             hccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            54 3444332  222333345688999998874    45677777888888999999998888887776    1      


Q ss_pred             CC-HHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844          305 LD-AEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP  360 (365)
Q Consensus       305 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  360 (365)
                      .+ .....++..++..++....|.+|++.+.... -++...+++. +||+||||++-.
T Consensus       303 ~~~~~e~~~~~~~a~~~s~~~l~~~~qi~l~g~~-el~~ap~~~~~~Em~llr~l~~~  359 (830)
T PRK07003        303 LDEWPEAADLRRFAELLSPEQVQLFYQIATVGRG-ELGLAPDEYAGFTMTLLRMLAFE  359 (830)
T ss_pred             ccccchHHHHHHHHHhCCHHHHHHHHHHHHhHHH-HhhcCCCHHHHHHHHHHHHhcCC
Confidence            11 1235688888999999889999988555544 4445555555 999999998653

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=100.00  E-value=2.4e-47  Score=358.35  Aligned_cols=336  Identities=22%  Similarity=0.310  Sum_probs=269.4

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      ..+||||++|++++||+.+.+.|++++..+++.| ++|+||.|+||||+||.+|+.++|.....         ..||+.|
T Consensus         6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~---------~ePC~~C   76 (515)
T COG2812           6 LARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPT---------AEPCGKC   76 (515)
T ss_pred             HHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCC---------CCcchhh
Confidence            5789999999999999999999999999999999 99999999999999999999999876421         5788888


Q ss_pred             eeccccccccccceecCCCCcCccc-hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                      ..|  ..+..+.++++..-|..... -..+|++.+.. .+.|    ..++++|+||||+|+|+.+++|+|||+|||||.+
T Consensus        77 ~~C--k~I~~g~~~DviEiDaASn~gVddiR~i~e~v-~y~P----~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~h  149 (515)
T COG2812          77 ISC--KEINEGSLIDVIEIDAASNTGVDDIREIIEKV-NYAP----SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSH  149 (515)
T ss_pred             hhh--HhhhcCCcccchhhhhhhccChHHHHHHHHHh-ccCC----ccccceEEEEecHHhhhHHHHHHHhcccccCccC
Confidence            777  66666666655543332221 12466666554 3333    4789999999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      +.|||+|+++.+++++++|||+.+.|..++.+++...|..++.++++.++++++..|++.++|++|+++++|+++...+.
T Consensus       150 V~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~  229 (515)
T COG2812         150 VKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE  229 (515)
T ss_pred             eEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887764


Q ss_pred             -CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh------------C
Q 017844          241 -PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR------------L  305 (365)
Q Consensus       241 -~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~------------~  305 (365)
                       .++.+.  .+.+......+.+++..++.+    +..++...+.++++.|.++..++.++..++.+.            +
T Consensus       230 ~~It~~~v~~~lG~~~~~~~~~~~~~i~~~----d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~  305 (515)
T COG2812         230 GEITLESVRDMLGLTDIEKLLSLLEAILKG----DAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQL  305 (515)
T ss_pred             CcccHHHHHHHhCCCCHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhc
Confidence             344433  334445567788889898874    456677778888899999999999999988651            1


Q ss_pred             CHHHHH-HHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          306 DAEIKH-EVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       306 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                      ...... .+...+..++....+.++++ ++.....++.+.++++ ++|+++|++..
T Consensus       306 ~~~~~~~~~~~~a~~~~~~~l~~~~~~-~~~~~~e~~~s~~~~~~~E~~lirl~~~  360 (515)
T COG2812         306 NTTEIEERTKELASQISVLNLQRLYQL-LLPGLKELKRSLSPRLGLEMTLIRLLEA  360 (515)
T ss_pred             cchhhhHHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhcCcchhHHHHHHHHHHHhh
Confidence            111112 35566666766656666665 3333444555555555 99999999865

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.3e-46  Score=354.96  Aligned_cols=335  Identities=19%  Similarity=0.263  Sum_probs=263.6

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      |.|++||||++|++++||+.+++.|++++..++.+| ++|+||+|+||||+|+.+|+.++|.....         ..||+
T Consensus         1 ~~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~---------~~pCg   71 (491)
T PRK14964          1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPT---------SDPCG   71 (491)
T ss_pred             CChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCC---------CCCcc
Confidence            889999999999999999999999999999999998 99999999999999999999998864321         35666


Q ss_pred             cceeccccccc---cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           80 RNIDLELTTLS---SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        80 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                      .|..|  ..+.   +.+.+++.+.+..  ....++++++... ..++    .++++|+||||+|+|+.+++++|+++||+
T Consensus        72 ~C~~C--~~i~~~~~~Dv~eidaas~~--~vddIR~Iie~~~-~~P~----~~~~KVvIIDEah~Ls~~A~NaLLK~LEe  142 (491)
T PRK14964         72 TCHNC--ISIKNSNHPDVIEIDAASNT--SVDDIKVILENSC-YLPI----SSKFKVYIIDEVHMLSNSAFNALLKTLEE  142 (491)
T ss_pred             ccHHH--HHHhccCCCCEEEEecccCC--CHHHHHHHHHHHH-hccc----cCCceEEEEeChHhCCHHHHHHHHHHHhC
Confidence            66555  4443   3445556554322  2335777766643 3443    56889999999999999999999999999


Q ss_pred             hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                      +++++.||++|++..+++++++|||+.+.|.+++.+++.+++.+++.++|+.+++++++.|++.++||+|.+++.|++++
T Consensus       143 Pp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli  222 (491)
T PRK14964        143 PAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAA  222 (491)
T ss_pred             CCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------
Q 017844          237 VQQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----------  303 (365)
Q Consensus       237 ~~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----------  303 (365)
                      .+++ .++.+.  .+.+...+..+++++++++.+    +..++...+.+++..+ +|..+++.+..++..          
T Consensus       223 ~y~~~~It~e~V~~llg~~~~~~If~L~~aI~~~----d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~  297 (491)
T PRK14964        223 IYSNNKISEKSVRDLLGCVDKHILEDLVEAILLG----DAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEI  297 (491)
T ss_pred             HhcCCCCCHHHHHHHHccCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccc
Confidence            7654 344333  222333456799999999985    4566777777887765 788888877765543          


Q ss_pred             --hCCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844          304 --RLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP  360 (365)
Q Consensus       304 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  360 (365)
                        .++++.+..+.+.+. ++....+.+++. +++.....+.+.+|+. +||.|||++..+
T Consensus       298 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~~e~~~~rl~~~~  355 (491)
T PRK14964        298 DFLLGEDLITRIKSLKI-GSTIFLSRLWQM-LLKGIQEVKSSTCVKQAAEMMIIRLCYLS  355 (491)
T ss_pred             cccCCHHHHHHHHHHhC-CCHHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence              123445566666655 665544444544 3444455667777777 999999998653

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=7.2e-47  Score=360.15  Aligned_cols=340  Identities=18%  Similarity=0.242  Sum_probs=263.1

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+++++.|++++..++.+| +||+||+|+||||+++.+++.++|......  .+  ....||+.
T Consensus         5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~--~g--~~~~PCG~   80 (700)
T PRK12323          5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE--GG--ITAQPCGQ   80 (700)
T ss_pred             hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--cc--CCCCCCcc
Confidence            48999999999999999999999999999999999 899999999999999999999998542110  00  01356777


Q ss_pred             ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.|   +++.+.+.  .....++++++.+... +    ..++++|+||||+|+|+..++|.||++||++
T Consensus        81 C~sC--~~I~aG~hpDviEIdAas~--~gVDdIReLie~~~~~-P----~~gr~KViIIDEah~Ls~~AaNALLKTLEEP  151 (700)
T PRK12323         81 CRAC--TEIDAGRFVDYIEMDAASN--RGVDEMAQLLDKAVYA-P----TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP  151 (700)
T ss_pred             cHHH--HHHHcCCCCcceEeccccc--CCHHHHHHHHHHHHhc-h----hcCCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence            6665  44444444   44444321  2223466766655432 2    2567899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.||++|+++.+++++|+|||+.+.|.+++.+++.++|++++.++|+.+++++++.|++.++|++|+++++++++..
T Consensus       152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia  231 (700)
T PRK12323        152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA  231 (700)
T ss_pred             CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987655


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----hC-----
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----RL-----  305 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~~-----  305 (365)
                      ++. .++.+.  .+.+......++++++.+..+    +.......+.++...|.++..++.++...+.+    +.     
T Consensus       232 ~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~----d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~  307 (700)
T PRK12323        232 YSAGNVSEEAVRGMLGAIDQSYLVRLLDALAAE----DGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAV  307 (700)
T ss_pred             hccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhc
Confidence            443 333222  122222345677888887753    34455555666778899988888888877665    11     


Q ss_pred             --CHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          306 --DAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       306 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                        +.....++.+++..++....|.+|++ +++-.+.++.+.+++. +||+||||++-
T Consensus       308 ~~~~~~~~~~~~~a~~~s~~~l~~~~q~-~~~~~~el~~a~~~~~~~Em~llrll~~  363 (700)
T PRK12323        308 QDDWPEADDIRRLAGRFDAQEVQLFYQI-ANLGRSELALAPDEYAGFTMTLLRMLAF  363 (700)
T ss_pred             ccccchHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence              11136778889999998888888987 4444455566666666 99999999875

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=100.00  E-value=3.1e-46  Score=320.92  Aligned_cols=291  Identities=29%  Similarity=0.424  Sum_probs=235.3

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +.|++||||++|++++||+.+++.|+..+.++..||++||||||||||+.+++++++++|+...            ||+-
T Consensus        24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~------------~~rv   91 (346)
T KOG0989|consen   24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLF------------PCRV   91 (346)
T ss_pred             cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCcccc------------ccch
Confidence            4699999999999999999999999999999888899999999999999999999999885532            2211


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCC----CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                                    .+.++++..+..  .+++.++.++......    ......++|+|+||+|.|+.++|++|+++||.
T Consensus        92 --------------l~lnaSderGis--vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~  155 (346)
T KOG0989|consen   92 --------------LELNASDERGIS--VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED  155 (346)
T ss_pred             --------------hhhccccccccc--chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc
Confidence                          122233222211  3445454444332211    11245679999999999999999999999999


Q ss_pred             hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                      ++.+++||++||..++++.++.|||+.++|+++..+.+...|+.|+.+||+.+++++++.|+..++||+|+|+..||+++
T Consensus       156 ~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls  235 (346)
T KOG0989|consen  156 FSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLS  235 (346)
T ss_pred             cccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCC---CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh--CCHHHHH
Q 017844          237 VQQYPFKDNQ---AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR--LDAEIKH  311 (365)
Q Consensus       237 ~~~~~~~~~~---~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~--~~~~~~~  311 (365)
                      ..+..++...   .+.+...+..+.++++.....++    .+....+.+++..|.+|..+++|++..+...  .++..+.
T Consensus       236 ~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~----~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~  311 (346)
T KOG0989|consen  236 LLGKRITTSLVNEELAGVVPDEKLLDLLELALSADT----PNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKA  311 (346)
T ss_pred             ccCcccchHHHHHHHhccCCHHHHHHHHHHHHccCh----HHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHH
Confidence            9777666322   34445566777888888777544    4555566788899999999999999999884  3456677


Q ss_pred             HHHHHHHHhhhh
Q 017844          312 EVCHWAAYYVSI  323 (365)
Q Consensus       312 ~~~~~~~~~~~~  323 (365)
                      .+...+..-+.+
T Consensus       312 ~~~~kl~~~~~~  323 (346)
T KOG0989|consen  312 QISLKLFTRDKR  323 (346)
T ss_pred             HHHHHHHhccch
Confidence            777776665554

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.4e-46  Score=361.15  Aligned_cols=342  Identities=20%  Similarity=0.260  Sum_probs=273.0

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+++++.|++++..++.+| +||+||+|+||||+++.+++.++|......  .+.  ...||+.
T Consensus         5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~--~~~--~~~pCg~   80 (618)
T PRK14951          5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ--GGI--TATPCGV   80 (618)
T ss_pred             HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--cCC--CCCCCCc
Confidence            49999999999999999999999999999999999 899999999999999999999998643211  010  0367888


Q ss_pred             ceeccccccccccceecCCCCcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844           81 NIDLELTTLSSANHVELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~  159 (365)
                      |..|  ..+..+.|.++..-+.. ......++++++.+. ..+.    .++++|+||||+|+|+..++|.|+++||+++.
T Consensus        81 C~~C--~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~-~~p~----~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~  153 (618)
T PRK14951         81 CQAC--RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAV-YKPV----QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPE  153 (618)
T ss_pred             cHHH--HHHHcCCCCceeecCcccccCHHHHHHHHHHHH-hCcc----cCCceEEEEEChhhCCHHHHHHHHHhcccCCC
Confidence            8777  66666665554433222 122235677776543 3332    56789999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      ++.||++|+++.+++++++|||..++|.+++.+++.++|++++.++|+.++++++..|++.++||+|.+++++++++.++
T Consensus       154 ~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~  233 (618)
T PRK14951        154 YLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFG  233 (618)
T ss_pred             CeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876654


Q ss_pred             C-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH------------h
Q 017844          240 Y-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------R  304 (365)
Q Consensus       240 ~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~------------~  304 (365)
                      . .++.+.  .+.+...++.++++++++..+    +...+...+.++...|.++..++..+...+.+            .
T Consensus       234 ~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~----d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~  309 (618)
T PRK14951        234 SGQLQEAAVRQMLGSVDRSHVFRLIDALAQG----DGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAA  309 (618)
T ss_pred             CCCcCHHHHHHHHcCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence            3 333222  233344567889999999874    44566677788888999999999999888765            1


Q ss_pred             CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          305 LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                      .+.....++..++..++....|.+|++.+.... -++...+++. +||+||||+.-
T Consensus       310 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~em~l~r~~~~  364 (618)
T PRK14951        310 ATDPEAAEVARLAALMPADETQLLYSICLHGRA-ELGLAPDEYAALTMVLLRLLAF  364 (618)
T ss_pred             cChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HhccCCCHHHHHHHHHHHHhhC
Confidence            233456778889988888888999988555544 3444445555 99999999854

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=6.9e-46  Score=346.03  Aligned_cols=340  Identities=17%  Similarity=0.157  Sum_probs=261.6

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|++||||++|++++||+++++.|+.++..++.+| ++|+||+|+||||+|+.+|+.++|.....         ..||+.
T Consensus         7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---------~~pCg~   77 (484)
T PRK14956          7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---------NEPCNE   77 (484)
T ss_pred             hhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---------ccccCC
Confidence            69999999999999999999999999999999998 99999999999999999999998864321         234444


Q ss_pred             ceecc-ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844           81 NIDLE-LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus        81 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~  159 (365)
                      |..|. +....+.+++++.+....  ....++++.+.+.. .+    ..++++|+||||+|+|+.+++++|+++||+++.
T Consensus        78 C~sC~~i~~g~~~dviEIdaas~~--gVd~IReL~e~l~~-~p----~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~  150 (484)
T PRK14956         78 CTSCLEITKGISSDVLEIDAASNR--GIENIRELRDNVKF-AP----MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPA  150 (484)
T ss_pred             CcHHHHHHccCCccceeechhhcc--cHHHHHHHHHHHHh-hh----hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence            43330 022233345555543221  12245666555432 22    245789999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      ++.||++|+++.+++++|+|||+.+.|.+++.+++.++|++++.++|+.++++++..|++.++||+|+|+++|+++....
T Consensus       151 ~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~  230 (484)
T PRK14956        151 HIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT  230 (484)
T ss_pred             ceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999865443


Q ss_pred             -CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------------
Q 017844          240 -YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------------  303 (365)
Q Consensus       240 -~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-------------  303 (365)
                       +.++.+.  .+.+.+..+.+.++++++...+.   ...+...+..++..|.+|..++..+.+++.+             
T Consensus       231 ~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~---~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~  307 (484)
T PRK14956        231 DSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDN---HSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRES  307 (484)
T ss_pred             CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhh
Confidence             3344333  22233455667788888876532   3456666778889999999999988887765             


Q ss_pred             -hCCHHHHHHHHHHHHHhhhhhHHHHhhh--c-ccCC-CCCccccccccc-cccchhcccCCC
Q 017844          304 -RLDAEIKHEVCHWAAYYVSISFQILFIV--P-LVDF-PSPLECSAQAAY-IQPPLIRANSDP  360 (365)
Q Consensus       304 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~  360 (365)
                       .+.++...++...+..++.........+  . ...+ +...+.+.+|+. +|+.++|++.+.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~~~  370 (484)
T PRK14956        308 VNFPKEDLQKMKSDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVEEL  370 (484)
T ss_pred             ccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhccc
Confidence             2346677888888888876633322111  0 1111 346788888888 999999998753

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4.2e-46  Score=355.76  Aligned_cols=335  Identities=17%  Similarity=0.267  Sum_probs=265.4

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+.+++.|+.++.+++.+| ++|+||+|+||||+|+++|+.++|.....         ..||+.
T Consensus         4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~---------~~pCg~   74 (702)
T PRK14960          4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVT---------STPCEV   74 (702)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC---------CCCCcc
Confidence            58999999999999999999999999999999999 89999999999999999999998864211         457777


Q ss_pred             ceeccccccccccce---ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.++   ++.+.+..  ....+++++..... .+    ..++++|+||||+|+|+..++++|+++||++
T Consensus        75 C~sC--~~I~~g~hpDviEIDAAs~~--~VddIReli~~~~y-~P----~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP  145 (702)
T PRK14960         75 CATC--KAVNEGRFIDLIEIDAASRT--KVEDTRELLDNVPY-AP----TQGRFKVYLIDEVHMLSTHSFNALLKTLEEP  145 (702)
T ss_pred             CHHH--HHHhcCCCCceEEecccccC--CHHHHHHHHHHHhh-hh----hcCCcEEEEEechHhcCHHHHHHHHHHHhcC
Confidence            7666  555555444   44443221  22346666655432 22    2467899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.||++|+++.+++++++|||..++|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.|++++++++.
T Consensus       146 P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIa  225 (702)
T PRK14960        146 PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIA  225 (702)
T ss_pred             CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             cC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h------
Q 017844          238 QQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R------  304 (365)
Q Consensus       238 ~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~------  304 (365)
                      ++ +.++.+.  .+.+...+..++++++++.+++    ...+...+.++...|.++..++..+...+.+    .      
T Consensus       226 yg~g~IT~edV~~lLG~~d~e~IfdLldAI~k~d----~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~  301 (702)
T PRK14960        226 YGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQ----REKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELG  301 (702)
T ss_pred             hcCCCcCHHHHHHHhccCCHHHHHHHHHHHHhcC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            54 3344333  2233344567999999999853    4556666777888899999888877766554    1      


Q ss_pred             --CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          305 --LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                        .+......+..++..++....+.++++ ++.-...++.+.+|++ +||+||||+.-
T Consensus       302 ~~~~~~~~~~~~~la~~~s~~~l~~~~qi-~l~~~~~l~~s~~~r~~lEm~llrl~~~  358 (702)
T PRK14960        302 LKYSEEINAKILQLSKLISAQDLQLYYQI-ACKGRSDLQLAVTQEQGFEMCVLRLLAF  358 (702)
T ss_pred             ccccHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhccCCChhHHHHHHHHHHHhC
Confidence              223456677788888887777777776 4444455666666666 99999999864

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=9.6e-45  Score=345.16  Aligned_cols=339  Identities=17%  Similarity=0.207  Sum_probs=265.5

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      .+|++||||++|++++||+.+++.|+.++..++.+| ++|+||+|+||||+|+++|+.++|.....-   +..  ..||+
T Consensus         9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~---~~~--~~~C~   83 (507)
T PRK06645          9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE---NTT--IKTCE   83 (507)
T ss_pred             cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccc---CcC--cCCCC
Confidence            379999999999999999999999999999999987 999999999999999999999988642110   000  34566


Q ss_pred             cceecccccccc---ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           80 RNIDLELTTLSS---ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        80 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                      .|..|  ..+..   .+.+++.+.+.  .....+++++.... ..++    .++++|+||||+|+|+..++++|+++||+
T Consensus        84 ~C~~C--~~i~~~~h~Dv~eidaas~--~~vd~Ir~iie~a~-~~P~----~~~~KVvIIDEa~~Ls~~a~naLLk~LEe  154 (507)
T PRK06645         84 QCTNC--ISFNNHNHPDIIEIDAASK--TSVDDIRRIIESAE-YKPL----QGKHKIFIIDEVHMLSKGAFNALLKTLEE  154 (507)
T ss_pred             CChHH--HHHhcCCCCcEEEeeccCC--CCHHHHHHHHHHHH-hccc----cCCcEEEEEEChhhcCHHHHHHHHHHHhh
Confidence            55554  33333   34444544322  22335677665543 3343    56789999999999999999999999999


Q ss_pred             hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                      ++.++.||++|+...+++++++|||+.++|.+++.+++.++++++++++|+.+++++++.|++.++||+|.|++.|++++
T Consensus       155 pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai  234 (507)
T PRK06645        155 PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAA  234 (507)
T ss_pred             cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             hcCC----CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------
Q 017844          237 VQQY----PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-------  303 (365)
Q Consensus       237 ~~~~----~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-------  303 (365)
                      .++.    .++.+.  .+.+...++.++++++++..+    +...+...+.+++..|.+|..++..+.+++..       
T Consensus       235 ~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~----d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~  310 (507)
T PRK06645        235 SMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHR----ETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKML  310 (507)
T ss_pred             HhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6543    344433  334556678999999999984    55777888899999999999998877765543       


Q ss_pred             -----hCCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844          304 -----RLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS  358 (365)
Q Consensus       304 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (365)
                           .+.+..+.++..++.+++.+..+.++++ ++.-....+.+.+|+. +||.|||++.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~e~~l~r~~~  370 (507)
T PRK06645        311 PNYSLPIYESFNDRTKSILDKISLPHLSILWQI-YNKGVGEIKISYNQLTETEMLVIKSIY  370 (507)
T ss_pred             cccccccchhHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHH
Confidence                 1223445677777777776655555554 3333445666666665 9999999874

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=4.1e-45  Score=352.24  Aligned_cols=335  Identities=19%  Similarity=0.249  Sum_probs=268.6

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+++++.|+.++..++.+| +||+||+|+||||+|+.+++.++|.....         ..||+.
T Consensus         5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---------~~pCg~   75 (709)
T PRK08691          5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---------GEPCGV   75 (709)
T ss_pred             hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---------CCCCcc
Confidence            58999999999999999999999999999999999 89999999999999999999998865321         346666


Q ss_pred             ceeccccccccccce---ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.++   ++...+.  .....+++++.... ..+.    .++++|+||||+|+|+..+++.|+++||++
T Consensus        76 C~sC--r~i~~g~~~DvlEidaAs~--~gVd~IRelle~a~-~~P~----~gk~KVIIIDEad~Ls~~A~NALLKtLEEP  146 (709)
T PRK08691         76 CQSC--TQIDAGRYVDLLEIDAASN--TGIDNIREVLENAQ-YAPT----AGKYKVYIIDEVHMLSKSAFNAMLKTLEEP  146 (709)
T ss_pred             cHHH--HHHhccCccceEEEecccc--CCHHHHHHHHHHHH-hhhh----hCCcEEEEEECccccCHHHHHHHHHHHHhC
Confidence            5554  444444443   3433221  12234666665432 2232    457899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.||++|++..+++++++|||..+.|.+++.+++.++|++++.++|+.++++++..|++.++||+|.++++|++++.
T Consensus       147 p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia  226 (709)
T PRK08691        147 PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIA  226 (709)
T ss_pred             CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             cC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h------
Q 017844          238 QQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R------  304 (365)
Q Consensus       238 ~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~------  304 (365)
                      ++ +.++.+.  .+.+...+..++++++++..+    +...+...+.+++..|.++..++.++..++.+    +      
T Consensus       227 ~g~g~It~e~V~~lLG~~d~~~If~LldAL~~~----d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~  302 (709)
T PRK08691        227 LGSGKVAENDVRQMIGAVDKQYLYELLTGIINQ----DGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSAL  302 (709)
T ss_pred             hcCCCcCHHHHHHHHcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhc
Confidence            54 2344332  223333467899999999984    45677778888999999999999999988776    1      


Q ss_pred             -CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          305 -LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       305 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                       .+......+..++..++....+.+|++.+... .-++.+..++. +||+||||+.-
T Consensus       303 ~~~~~~~~~~~~~a~~~~~~~l~~~~q~~l~~~-~~l~~a~~~~~~~Em~llrl~~~  358 (709)
T PRK08691        303 AHDDPDSDILHRLAQTISGEQIQLYYQIAVHGK-RDLSLAPDEYAGFMMTLLRMLAF  358 (709)
T ss_pred             cccchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHhc
Confidence             12234677888888898888888888744444 45555666666 99999999864

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2.4e-44  Score=347.26  Aligned_cols=337  Identities=14%  Similarity=0.162  Sum_probs=265.7

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      |.|.+||||++|++++||+++++.|+.++..++.+| ++|+||+|+||||+|+++|+.++|.....         ..||+
T Consensus         1 ~al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pCg   71 (584)
T PRK14952          1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---------ATPCG   71 (584)
T ss_pred             CcHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---------CCccc
Confidence            557799999999999999999999999999999999 89999999999999999999998864211         34677


Q ss_pred             cceeccccccc-----cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844           80 RNIDLELTTLS-----SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (365)
Q Consensus        80 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l  154 (365)
                      .|..|  ..+.     +.+.+++......  ....++++...+. ..+.    .++++|+||||+|+|+.+++|+|+++|
T Consensus        72 ~C~~C--~~i~~~~~~~~dvieidaas~~--gvd~iRel~~~~~-~~P~----~~~~KVvIIDEah~Lt~~A~NALLK~L  142 (584)
T PRK14952         72 VCESC--VALAPNGPGSIDVVELDAASHG--GVDDTRELRDRAF-YAPA----QSRYRIFIVDEAHMVTTAGFNALLKIV  142 (584)
T ss_pred             ccHHH--HHhhcccCCCceEEEecccccc--CHHHHHHHHHHHH-hhhh----cCCceEEEEECCCcCCHHHHHHHHHHH
Confidence            66555  3332     2334445443221  2234566555443 3332    567899999999999999999999999


Q ss_pred             hhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844          155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       155 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      |+++.++.||++|+++.+++++|+|||+.++|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.++++|++
T Consensus       143 EEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldq  222 (584)
T PRK14952        143 EEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQ  222 (584)
T ss_pred             hcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCC--CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh------
Q 017844          235 CRVQQY--PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR------  304 (365)
Q Consensus       235 ~~~~~~--~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~------  304 (365)
                      ++.+..  .++.+.  .+.+...+..++++++++..+    +...+...+.+++..|.++..++..+..++.+-      
T Consensus       223 l~~~~~~~~It~~~v~~llg~~~~~~i~~lv~al~~~----d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~  298 (584)
T PRK14952        223 LLAGAADTHVTYQRALGLLGATDVALIDDAVDALAAD----DAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAV  298 (584)
T ss_pred             HHhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            887642  344333  233444567888999988874    445666667788889999999999888887651      


Q ss_pred             ----------CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844          305 ----------LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP  360 (365)
Q Consensus       305 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  360 (365)
                                +.......+...+..|+.....-+++ .+.+-...++...+++. +|+.+++++.++
T Consensus       299 ~~~~~~~l~~~~~~~~~~l~~qa~~~s~~~L~~~i~-~l~~~~~~~~~~~~~rl~LE~llikl~~~~  364 (584)
T PRK14952        299 PDAAARGVVDAPEDVLERMREQAARIGLATLTRYAE-VVQAGLGEMRGATAPRLLLEVVCARLLLPS  364 (584)
T ss_pred             chhhhcccccCCHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHhccCCChHHHHHHHHHHHhccc
Confidence                      12345567778888887663333343 34445567778888887 999999998753

>PLN03025 replication factor C subunit; Provisional

Probab=100.00  E-value=1.4e-43  Score=325.01  Aligned_cols=292  Identities=25%  Similarity=0.384  Sum_probs=241.6

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +||++||||++|++++||+++++.|+.++..++.||++|+||||+||||+|+++|++++++....               
T Consensus         1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~---------------   65 (319)
T PLN03025          1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKE---------------   65 (319)
T ss_pred             CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCcc---------------
Confidence            58999999999999999999999999999999999999999999999999999999987643210               


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                                  .++++++++...  ...+++.++.++..... . ..++++|++|||+|.|+..++++|++++|+++..
T Consensus        66 ------------~~~eln~sd~~~--~~~vr~~i~~~~~~~~~-~-~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~  129 (319)
T PLN03025         66 ------------AVLELNASDDRG--IDVVRNKIKMFAQKKVT-L-PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNT  129 (319)
T ss_pred             ------------ceeeeccccccc--HHHHHHHHHHHHhcccc-C-CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCC
Confidence                        123444443322  22466777666554321 1 1246799999999999999999999999999888


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      ++||++||...++.++++|||..++|++++.+++..+|..++.++|+.+++++++.+++.++||+|.+++.||.++....
T Consensus       130 t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~  209 (319)
T PLN03025        130 TRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFG  209 (319)
T ss_pred             ceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997665433


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 017844          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWA  317 (365)
Q Consensus       241 ~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~~  317 (365)
                      .++.+.  .+........++++++++..    +++..++..+++++..|++|..|+..+...+.+ .+++..+.++...+
T Consensus       210 ~i~~~~v~~~~~~~~~~~i~~~i~~~~~----~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~~~~~~~~~~~~~~~  285 (319)
T PLN03025        210 FVNQENVFKVCDQPHPLHVKNIVRNCLK----GKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREI  285 (319)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            344332  23344556788888888776    567889999999999999999999999776654 45788889999999


Q ss_pred             HHhhhhhHHH
Q 017844          318 AYYVSISFQI  327 (365)
Q Consensus       318 ~~~~~~~~~~  327 (365)
                      +.+++|+...
T Consensus       286 ~~~~~~~~~g  295 (319)
T PLN03025        286 GFAHMRICDG  295 (319)
T ss_pred             HHHHHHHHCC
Confidence            9999987643

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=1.7e-44  Score=349.95  Aligned_cols=332  Identities=19%  Similarity=0.251  Sum_probs=260.6

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+.+++.|+..+..++.+| ++|+||+|+||||+|+.+++.++|....         ...||+.
T Consensus         5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~---------~~~pCg~   75 (647)
T PRK07994          5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI---------TATPCGE   75 (647)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC---------CCCCCCC
Confidence            58999999999999999999999999999999999 8999999999999999999999886321         1457777


Q ss_pred             ceecccccccccccee---cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANHVE---LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.|.+   +.+.+.  .....++++++.+.. .+    ..++++|+||||+|+|+..++|+||++||++
T Consensus        76 C~~C--~~i~~g~~~D~ieidaas~--~~VddiR~li~~~~~-~p----~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP  146 (647)
T PRK07994         76 CDNC--REIEQGRFVDLIEIDAASR--TKVEDTRELLDNVQY-AP----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEP  146 (647)
T ss_pred             CHHH--HHHHcCCCCCceeeccccc--CCHHHHHHHHHHHHh-hh----hcCCCEEEEEechHhCCHHHHHHHHHHHHcC
Confidence            7655  5555454443   433321  222346676665433 22    2567899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.+++||++|+++.+++++|+|||+.++|.+++.+++..+|++++.++|+.++++++..|++.++|++|+|+++++++..
T Consensus       147 p~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia  226 (647)
T PRK07994        147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIA  226 (647)
T ss_pred             CCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987665


Q ss_pred             cC-CCCCCCC--C-CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh---------
Q 017844          238 QQ-YPFKDNQ--A-IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR---------  304 (365)
Q Consensus       238 ~~-~~~~~~~--~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~---------  304 (365)
                      .+ +.++.+.  . +...+ ...++++++++..+    +...+...+.++...|.+++.++.++...+.+-         
T Consensus       227 ~~~~~it~~~v~~~lg~~d-~~~~~~ll~al~~~----d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~  301 (647)
T PRK07994        227 SGNGQVTTDDVSAMLGTLD-DDQALSLLEALVEG----DGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAA  301 (647)
T ss_pred             hcCCCcCHHHHHHHHccCC-HHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccch
Confidence            53 2333222  1 11222 34577888887763    345566667777888999999999888877651         


Q ss_pred             ---CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhccc
Q 017844          305 ---LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRAN  357 (365)
Q Consensus       305 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  357 (365)
                         ...+....+..++.+++....+.+|++ ++.-...++....++. +||.||||+
T Consensus       302 ~~~~~~d~~~~l~~la~~~s~~~l~~~~q~-~~~~~~~L~~n~n~~l~lE~~llr~~  357 (647)
T PRK07994        302 LDNDMADIELRLRELARTLPPEDVQLYYQT-LLIGRKDLPLAPDRRMGVEMTLLRML  357 (647)
T ss_pred             hcccchhHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence               112233478888888887767777775 5555555566666666 999999984

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.3e-43  Score=329.82  Aligned_cols=336  Identities=19%  Similarity=0.256  Sum_probs=261.0

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|++||||++|++++||+++++.++.++..++.+| ++|+||+|+||||+|+.+++.+.|.....         ..||+.
T Consensus         5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~pc~~   75 (363)
T PRK14961          5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNPCRK   75 (363)
T ss_pred             HHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCC
Confidence            48999999999999999999999999999999999 89999999999999999999998754211         356666


Q ss_pred             ceeccccccccccceecCCCCcCc-cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844           81 NIDLELTTLSSANHVELSPSDAGF-QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~  159 (365)
                      |..|  ..+..+.++++..-+... .....+++++..+. ..+    ..++++|+||||+|.++..++++|++++|+++.
T Consensus        76 c~~c--~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~-~~p----~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~  148 (363)
T PRK14961         76 CIIC--KEIEKGLCLDLIEIDAASRTKVEEMREILDNIY-YSP----SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQ  148 (363)
T ss_pred             CHHH--HHHhcCCCCceEEecccccCCHHHHHHHHHHHh-cCc----ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCC
Confidence            6555  444444443332111111 12223555554433 222    246779999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      ++.||++|++..++.++++|||..++|++++.+++.+++.++++++|+.+++++++.+++.++||+|.|++.+++++..+
T Consensus       149 ~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~  228 (363)
T PRK14961        149 HIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLG  228 (363)
T ss_pred             CeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876654


Q ss_pred             C-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h--------
Q 017844          240 Y-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R--------  304 (365)
Q Consensus       240 ~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~--------  304 (365)
                      . .++.+.  .+.....+..++++++++..+    +...+...+.+++..|.+|..++..+..++.+    +        
T Consensus       229 ~~~It~~~v~~~l~~~~~~~i~~l~~ai~~~----~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~  304 (363)
T PRK14961        229 KGNINIKNVTDMLGLLNEKQSFLLTDALLKK----DSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNT  304 (363)
T ss_pred             CCCCCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhc
Confidence            2 333332  233445677889999999874    34566666788888899999999988888775    1        


Q ss_pred             -CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844          305 -LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS  358 (365)
Q Consensus       305 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (365)
                       ..+.....+.+.+..++..-...+++. +......++....+++ +|+.|+|+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~e~~l~~~~~  359 (363)
T PRK14961        305 IFIKNYKNQIQKIAQNNKKTNIQLCYQI-LLNGRKELKFAPDQKIGVEMTLLRAIN  359 (363)
T ss_pred             ccchHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHccCCCchHHHHHHHHHHHh
Confidence             112256677778877776645544543 4455566777777777 9999999875

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=5.8e-44  Score=344.51  Aligned_cols=336  Identities=18%  Similarity=0.257  Sum_probs=265.7

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+++++.|..++..++.+| ++|+||+|+||||+|+.+++.++|.....         ..||+.
T Consensus         5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pcg~   75 (527)
T PRK14969          5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---------ATPCGV   75 (527)
T ss_pred             HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCC
Confidence            48999999999999999999999999999999999 89999999999999999999998864211         357777


Q ss_pred             ceeccccccccccceecCCCCcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844           81 NIDLELTTLSSANHVELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~  159 (365)
                      |..|  ..+..+.+.++..-+.. ......+++++.... ..+    ..++++|+||||+|+|+.+++|+|+++||+++.
T Consensus        76 C~~C--~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~-~~p----~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~  148 (527)
T PRK14969         76 CSAC--LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQ-YAP----TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE  148 (527)
T ss_pred             CHHH--HHHhcCCCCceeEeeccccCCHHHHHHHHHHHh-hCc----ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence            7666  44444444443222211 122234666665543 333    356789999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      ++.||++|+++.+++++++|||+.++|.+++.+++.+++.+++.++|+.++++++..|++.++||+|++++++++++.++
T Consensus       149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~  228 (527)
T PRK14969        149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYG  228 (527)
T ss_pred             CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877664


Q ss_pred             C-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h-------C
Q 017844          240 Y-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R-------L  305 (365)
Q Consensus       240 ~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~-------~  305 (365)
                      . .++.+.  .+.....++.++++++++..++    ...+...+.++...+.++..++..+...+.+    +       .
T Consensus       229 ~~~I~~~~v~~~~~~~~~~~i~~ll~al~~~~----~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~  304 (527)
T PRK14969        229 GGTVNESEVRAMLGAIDQDYLFALLEALLAQD----GAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIAD  304 (527)
T ss_pred             CCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence            3 333222  1222223567889999988643    4556666777888899999999988887765    1       1


Q ss_pred             CHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844          306 DAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS  358 (365)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (365)
                      +......+.+++..++....+.+|++ ++.-..-++.+.+|++ +||+||||+.
T Consensus       305 ~~~~~~~~~~~a~~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~r~~~  357 (527)
T PRK14969        305 DLPERDRLLDLAKRLSPEDIQLYYQI-ALHGRRDLGLAPDEYAGFTMTLLRMLA  357 (527)
T ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHhc
Confidence            22346778888988988877777775 5555556666667777 9999999984

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.3e-43  Score=347.96  Aligned_cols=335  Identities=20%  Similarity=0.271  Sum_probs=255.9

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|++||||++|++++||+++++.|++++..++++| ++|+||+|+||||+|+++++.++|....         ...||+.
T Consensus         5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~---------~~~pCg~   75 (944)
T PRK14949          5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGV---------TATPCGV   75 (944)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCC---------CCCCCCC
Confidence            68999999999999999999999999999999999 7999999999999999999999886321         0345555


Q ss_pred             ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.+   +++.+.+.  .....++++++.+.. .+    ..++++|+||||+|+|+.+++++|+++||++
T Consensus        76 C~sC--~~i~~g~~~DviEidAas~--~kVDdIReLie~v~~-~P----~~gk~KViIIDEAh~LT~eAqNALLKtLEEP  146 (944)
T PRK14949         76 CSSC--VEIAQGRFVDLIEVDAASR--TKVDDTRELLDNVQY-RP----SRGRFKVYLIDEVHMLSRSSFNALLKTLEEP  146 (944)
T ss_pred             chHH--HHHhcCCCceEEEeccccc--cCHHHHHHHHHHHHh-hh----hcCCcEEEEEechHhcCHHHHHHHHHHHhcc
Confidence            5444  33333333   44443321  222346676666543 22    2467899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.+++||++|++..+++++|+|||+.++|.+++.+++.++|++++..+++.++++++..|++.++|++|+|+++++++..
T Consensus       147 P~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala  226 (944)
T PRK14949        147 PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIA  226 (944)
T ss_pred             CCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987664


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----hCCHH--
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----RLDAE--  308 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~~~~~--  308 (365)
                      .+. .++...  .+.+......+..+++.+..    .+...+...+..++..|.++..|++.|..++.+    +....  
T Consensus       227 ~~~~~It~~~V~~llG~iD~~~V~~llksI~~----~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~  302 (944)
T PRK14949        227 FGGGQVMLTQVQTMLGSIDEQHVIALLKALTD----ADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAA  302 (944)
T ss_pred             hcCCcccHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchh
Confidence            432 222111  11111223446677777665    345666677778888999999999998888775    22111  


Q ss_pred             ----HHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          309 ----IKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       309 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                          ....+...+.+++..-.+.+++. ++...+.++....+++ +|+.||||++-
T Consensus       303 ~l~i~~e~i~~~a~~~s~~~L~~~ie~-l~~a~~~L~~n~n~rl~lE~~LLrl~~~  357 (944)
T PRK14949        303 QQSLYSEQIRAFAEQLSPEQVQLYYQI-LLTGRKDLPHAPDPKSGLEMALLRAVAF  357 (944)
T ss_pred             hccchHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhhCCChHHHHHHHHHHHHHc
Confidence                12456667777776655555554 5555666777777776 99999999763

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.6e-43  Score=338.50  Aligned_cols=335  Identities=18%  Similarity=0.238  Sum_probs=258.1

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|++||||++|++++||+.+++.|..++..++.+| ++|+||+|+||||+|+.+|+.++|.....         ..||+.
T Consensus         5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~pCg~   75 (546)
T PRK14957          5 ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVT---------AEPCNK   75 (546)
T ss_pred             hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcc
Confidence            59999999999999999999999999999999999 99999999999999999999998854321         345665


Q ss_pred             ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.+   +++.....  .....++++++.+.. .+    ..++++|+||||+|+|+.++++.|+++||++
T Consensus        76 C~sC--~~i~~~~~~dlieidaas~--~gvd~ir~ii~~~~~-~p----~~g~~kViIIDEa~~ls~~a~naLLK~LEep  146 (546)
T PRK14957         76 CENC--VAINNNSFIDLIEIDAASR--TGVEETKEILDNIQY-MP----SQGRYKVYLIDEVHMLSKQSFNALLKTLEEP  146 (546)
T ss_pred             cHHH--HHHhcCCCCceEEeecccc--cCHHHHHHHHHHHHh-hh----hcCCcEEEEEechhhccHHHHHHHHHHHhcC
Confidence            5554  33333333   33433211  112245666655543 22    2567899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.||++|++..+++++++|||..++|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.|+++|++++.
T Consensus       147 p~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~  226 (546)
T PRK14957        147 PEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAIS  226 (546)
T ss_pred             CCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----------
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----------  303 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-----------  303 (365)
                      +.. .++.+.  .+.....++.++++++++.+++    ...+...+.++...+.+...++..+.+.+.+           
T Consensus       227 ~~~~~It~~~V~~~l~~~~~~~v~~ll~Al~~~d----~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~  302 (546)
T PRK14957        227 FCGGELKQAQIKQMLGIIDSEEVYSIINAIIDND----PKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLD  302 (546)
T ss_pred             hccCCCCHHHHHHHHccCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            643 333221  1112234567899999988743    4445555667777889999998888754433           


Q ss_pred             hCCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          304 RLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                      .+..+....+..++.+++....+.+++. ++.-..-++....++. +||+||||++-
T Consensus       303 ~~~~~~~~~i~~~a~~~s~~~l~~~~~~-~~~~~~~l~~~~~~~~~~em~l~r~~~~  358 (546)
T PRK14957        303 AVNDIDVDIINNILAKISIEQAHFLYQL-TITAKKDIALAPNFETGVTMAILRLIAF  358 (546)
T ss_pred             ccchhhHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence            1223455778888888888877777775 4444444555555555 99999999864

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4e-43  Score=342.48  Aligned_cols=334  Identities=16%  Similarity=0.240  Sum_probs=263.9

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      |++||||++|++++||+++++.|+.++..++.+| +||+||+|+||||+++++++.++|.....         ..||+.|
T Consensus         6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~---------~~~c~~c   76 (576)
T PRK14965          6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT---------AEPCNVC   76 (576)
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC---------CCCCCcc
Confidence            7899999999999999999999999999999999 89999999999999999999998864321         3466665


Q ss_pred             eeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           82 IDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        82 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                      ..|  ..+..+   +++++...+.  .....+++++..+. ..+    ..++++|+||||+|+|+.+++|+|+++||+++
T Consensus        77 ~~c--~~i~~g~~~d~~eid~~s~--~~v~~ir~l~~~~~-~~p----~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp  147 (576)
T PRK14965         77 PPC--VEITEGRSVDVFEIDGASN--TGVDDIRELRENVK-YLP----SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP  147 (576)
T ss_pred             HHH--HHHhcCCCCCeeeeeccCc--cCHHHHHHHHHHHH-hcc----ccCCceEEEEEChhhCCHHHHHHHHHHHHcCC
Confidence            444  333333   3344433221  12224666655543 333    25688999999999999999999999999999


Q ss_pred             CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~  238 (365)
                      .++.||++|+++.+++++|+|||+.+.|.+++.+++..++..++.++|+.++++++..+++.++||+|.++++|+++..+
T Consensus       148 ~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay  227 (576)
T PRK14965        148 PHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAF  227 (576)
T ss_pred             CCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             CC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh-----------
Q 017844          239 QY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR-----------  304 (365)
Q Consensus       239 ~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~-----------  304 (365)
                      .+ .++.++  .+.+...+..++++++++..+    +...+...+.+++..|.++..++..+..++.+-           
T Consensus       228 ~g~~It~edV~~llG~~~~~~l~~ll~al~~~----d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~  303 (576)
T PRK14965        228 CGDAVGDDDVAELLGVVDRRLLLDISAAVFGR----DTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGD  303 (576)
T ss_pred             ccCCCCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            54 333332  222333455688999998874    456666777888889999999999888877651           


Q ss_pred             ---CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          305 ---LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       305 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                         +.+.....+.+.+..|+....+.+++. +++....++.+..+++ +|+.|+||+..
T Consensus       304 ~l~~~~~~~~~~~~~A~~~s~~~L~~~l~~-l~~~~~~lk~~~~~~l~lE~lllkl~~~  361 (576)
T PRK14965        304 LLDLSEAELAELRAQAAAADAADLQRHLTL-LLRAEGEMAHASFPRLVLEMALLKMATL  361 (576)
T ss_pred             hccCCHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHhcCCCcHHHHHHHHHHHhhc
Confidence               223344667788888887755555554 6666656666667777 99999999874

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=100.00  E-value=2.9e-42  Score=284.90  Aligned_cols=288  Identities=26%  Similarity=0.392  Sum_probs=241.0

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      +|++||||.-+.|++|+++.+..++...+.|..||++|.||||+||||.+.++|+++.++...                 
T Consensus        16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~k-----------------   78 (333)
T KOG0991|consen   16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYK-----------------   78 (333)
T ss_pred             hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhh-----------------
Confidence            699999999999999999999999999999999999999999999999999999999765421                 


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCce
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~  161 (365)
                                ...+++++++.+..+  .++..++.+++..-. . ..++.+|+|+||+|.|+..+|.+|.++||-++..+
T Consensus        79 ----------e~vLELNASdeRGID--vVRn~IK~FAQ~kv~-l-p~grhKIiILDEADSMT~gAQQAlRRtMEiyS~tt  144 (333)
T KOG0991|consen   79 ----------EAVLELNASDERGID--VVRNKIKMFAQKKVT-L-PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTT  144 (333)
T ss_pred             ----------hHhhhccCccccccH--HHHHHHHHHHHhhcc-C-CCCceeEEEeeccchhhhHHHHHHHHHHHHHcccc
Confidence                      112667777665544  688888988876532 1 23567999999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 017844          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP  241 (365)
Q Consensus       162 ~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~  241 (365)
                      +|.++||...++.+++.|||..++|..+++.++.+.|..+++.|++.++++.++.|+..++||+|+|+|.||.....-+.
T Consensus       145 RFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~  224 (333)
T KOG0991|consen  145 RFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGL  224 (333)
T ss_pred             hhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998766555


Q ss_pred             CCCCCC--CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Q 017844          242 FKDNQA--IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAA  318 (365)
Q Consensus       242 ~~~~~~--~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~~~  318 (365)
                      ++.+..  +........+.+++.....    .++.++.+.+.++...|.+|..|+..+++-..+ .+.+..+.++.+..+
T Consensus       225 Vn~enVfKv~d~PhP~~v~~ml~~~~~----~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~~~E~~rlE~ikeig  300 (333)
T KOG0991|consen  225 VNQENVFKVCDEPHPLLVKKMLQACLK----RNIDEALKILAELWKLGYSPEDIITTLFRVVKNMDVAESLRLEFIKEIG  300 (333)
T ss_pred             cchhhhhhccCCCChHHHHHHHHHHHh----ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            555542  2222233444555555444    678889999999999999999999999887765 234556777777777


Q ss_pred             Hhhhhh
Q 017844          319 YYVSIS  324 (365)
Q Consensus       319 ~~~~~~  324 (365)
                      .-+.|.
T Consensus       301 ~thmrI  306 (333)
T KOG0991|consen  301 LTHMRI  306 (333)
T ss_pred             hHHhHH
Confidence            666553

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=2.6e-42  Score=335.01  Aligned_cols=339  Identities=19%  Similarity=0.259  Sum_probs=263.4

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+.+++.|++++..++.+| ++|+||+|+||||+|+.+|+.++|.......  + .. ..||+.
T Consensus        13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~--~-~~-~~~cg~   88 (598)
T PRK09111         13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDG--G-PT-IDLCGV   88 (598)
T ss_pred             hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccC--C-Cc-cccCcc
Confidence            58999999999999999999999999999999998 9999999999999999999999986532100  0 00 356676


Q ss_pred             ceeccccccccccce---ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.|.   ++.+.+.  .....++++++.+ ...++    .++++|+||||+|+|+..+++.|+++||++
T Consensus        89 c~~C--~~i~~g~h~Dv~e~~a~s~--~gvd~IReIie~~-~~~P~----~a~~KVvIIDEad~Ls~~a~naLLKtLEeP  159 (598)
T PRK09111         89 GEHC--QAIMEGRHVDVLEMDAASH--TGVDDIREIIESV-RYRPV----SARYKVYIIDEVHMLSTAAFNALLKTLEEP  159 (598)
T ss_pred             cHHH--HHHhcCCCCceEEeccccc--CCHHHHHHHHHHH-Hhchh----cCCcEEEEEEChHhCCHHHHHHHHHHHHhC
Confidence            6666  555555544   4443321  2233577776654 33443    567899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.|||+|++..+++++++|||+.+.|.+++.+++..+|.+++.++|+.+++++++.|++.++||+|.+++.|++++.
T Consensus       160 p~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~  239 (598)
T PRK09111        160 PPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIA  239 (598)
T ss_pred             CCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----------
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----------  303 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-----------  303 (365)
                      ++. .++.+.  .+.....+..++++++++..+    +..++...+.+++..|.+|..++.++.+++..           
T Consensus       240 ~g~g~It~e~V~~llg~~~~~~if~L~~ai~~g----d~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a  315 (598)
T PRK09111        240 HGAGEVTAEAVRDMLGLADRARVIDLFEALMRG----DVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAA  315 (598)
T ss_pred             hcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchh
Confidence            642 333333  233344567889999998874    45666667778888999999999999977653           


Q ss_pred             ---hCCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844          304 ---RLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS  358 (365)
Q Consensus       304 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (365)
                         .+.+.....+...+.+|+.....-+++. +++.....|+...+++ +|+.|||++.
T Consensus       316 ~~~~~~p~~~~kl~~~A~~~s~~~L~r~~q~-Ll~~~~~vK~~~n~~lalE~lLlrl~~  373 (598)
T PRK09111        316 EDPSLSEAERTRGAEFAKKLSMRVLSRLWQM-LLKGIEEVQGAPRPLAAAEMVLIRLAY  373 (598)
T ss_pred             hcccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence               1223345567777777875533333332 3444434445677777 9999999874

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=4.9e-42  Score=342.92  Aligned_cols=336  Identities=16%  Similarity=0.177  Sum_probs=257.9

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      |.|.+||||++|++++||+.+++.|+.++..++++| |||+||+|+||||+++.|++.|+|.....         ..||+
T Consensus         3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~---------~~pCg   73 (824)
T PRK07764          3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPT---------STPCG   73 (824)
T ss_pred             hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCC---------CCCCc
Confidence            458899999999999999999999999999999999 99999999999999999999999864211         34666


Q ss_pred             cceecccccccc-----ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844           80 RNIDLELTTLSS-----ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (365)
Q Consensus        80 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l  154 (365)
                      .|..|  ..+..     .+++++...+.  .....++++.+.+. ..+    ..++++|+||||+|+|+..++|.|+++|
T Consensus        74 ~C~sC--~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~~-~~p----~~~~~KV~IIDEad~lt~~a~NaLLK~L  144 (824)
T PRK07764         74 ECDSC--VALAPGGPGSLDVTEIDAASH--GGVDDARELRERAF-FAP----AESRYKIFIIDEAHMVTPQGFNALLKIV  144 (824)
T ss_pred             ccHHH--HHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHHH-hch----hcCCceEEEEechhhcCHHHHHHHHHHH
Confidence            66555  33322     23344433221  12234566544432 233    2567899999999999999999999999


Q ss_pred             hhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844          155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       155 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      |+++.+++|||+|++.++++++|+|||+.+.|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.++++|++
T Consensus       145 EEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEK  224 (824)
T PRK07764        145 EEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQ  224 (824)
T ss_pred             hCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCC--CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----h-
Q 017844          235 CRVQQY--PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----R-  304 (365)
Q Consensus       235 ~~~~~~--~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-----~-  304 (365)
                      ++.+..  .++.+.  .+........++++++++..++    ...+...+..++..|.++..++..+.++|.+     . 
T Consensus       225 Lia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~~~D----~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~  300 (824)
T PRK07764        225 LLAGAGPEGVTYERAVALLGVTDSALIDEAVDALAAGD----GAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAV  300 (824)
T ss_pred             HHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            886632  333332  2334445677888999888643    4456666778888899999888888777654     1 


Q ss_pred             ----------CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          305 ----------LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       305 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                                +..+....+...+..|+..-..-+++. +++....++....+++ +|+.++|++-.
T Consensus       301 ~~~~~~~l~~~p~d~~~~L~~qA~~~s~~~L~r~ie~-l~ea~~~lrgn~nprL~LElLllrLll~  365 (824)
T PRK07764        301 PDAAERGLVDAPADQLDRMRAQAQRLGPAELTRAADV-VNDGLTEMRGATSPRLLLELLCARMLLP  365 (824)
T ss_pred             CcchhhhhccCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhhCCCcHHHHHHHHHHHHhh
Confidence                      113445566677777765533333332 5555556666667776 89888888753

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=1.3e-41  Score=330.47  Aligned_cols=333  Identities=19%  Similarity=0.276  Sum_probs=262.5

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      |.+||||++|++++||+++++.|++++..++.+| +||+||+|+|||++|+.+++.++|.....         ..||+.|
T Consensus         6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~~C   76 (559)
T PRK05563          6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCNEC   76 (559)
T ss_pred             HHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCcc
Confidence            7799999999999999999999999999999999 99999999999999999999999876422         4566766


Q ss_pred             eeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           82 IDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        82 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                      ..|  ..+..+   +.+++.+.+.  .....+++++..+. ..+    ..++++|+||||+|+|+.+++++|++++|+++
T Consensus        77 ~~C--~~i~~g~~~dv~eidaas~--~~vd~ir~i~~~v~-~~p----~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp  147 (559)
T PRK05563         77 EIC--KAITNGSLMDVIEIDAASN--NGVDEIRDIRDKVK-YAP----SEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP  147 (559)
T ss_pred             HHH--HHHhcCCCCCeEEeecccc--CCHHHHHHHHHHHh-hCc----ccCCeEEEEEECcccCCHHHHHHHHHHhcCCC
Confidence            555  444333   3444444321  12224666665543 333    35788999999999999999999999999999


Q ss_pred             CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~  238 (365)
                      .++.||++|+.+.+++++|+|||+.+.|.+++.+++..++..++.++|+.++++++..+++.++|++|.|++.|+++..+
T Consensus       148 ~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~  227 (559)
T PRK05563        148 AHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISF  227 (559)
T ss_pred             CCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             CC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----C------
Q 017844          239 QY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----L------  305 (365)
Q Consensus       239 ~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----~------  305 (365)
                      +. .++.++  .+.+......++++++++..+    +..++...+.+++..|.++..++.++..++.+-    .      
T Consensus       228 ~~~~It~~~V~~vlg~~~~~~i~~l~~al~~~----d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~  303 (559)
T PRK05563        228 GDGKVTYEDALEVTGSVSQEALDDLVDAIVEG----DVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEI  303 (559)
T ss_pred             ccCCCCHHHHHHHhCCCCHHHHHHHHHHHHcc----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence            42 333322  233444567788999998875    345666777888889999999999888877652    1      


Q ss_pred             ---CHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844          306 ---DAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS  358 (365)
Q Consensus       306 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (365)
                         +......+.+.+..|+......++.. +.+....+|.+.++++ +|+.|++++.
T Consensus       304 ~~~~~~~~~~~~~~a~~~s~~~L~~~i~~-L~~~~~~lk~~~~~~l~lE~lllkl~~  359 (559)
T PRK05563        304 LDESTENDELFKELSEKLDIERLYRMIDI-LNDAQQQIKWTNQPRIYLEVALVKLCE  359 (559)
T ss_pred             cccCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence               12334556666667765533333332 6666667777788887 9999999987

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2.8e-41  Score=324.61  Aligned_cols=337  Identities=17%  Similarity=0.247  Sum_probs=255.8

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|++||||++|++++||+.+++.|+.++..++.+| +||+||+|+||||+|+.+|+.++|.....         ..||+.
T Consensus         5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~   75 (624)
T PRK14959          5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNT   75 (624)
T ss_pred             hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcc
Confidence            69999999999999999999999999999999877 99999999999999999999998854211         346666


Q ss_pred             ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.+   +++.+...  .....++++.+.+.. .+.    .++++|+||||+|.|+.++++.|+++||++
T Consensus        76 C~sC--~~i~~g~hpDv~eId~a~~--~~Id~iR~L~~~~~~-~p~----~g~~kVIIIDEad~Lt~~a~naLLk~LEEP  146 (624)
T PRK14959         76 CEQC--RKVTQGMHVDVVEIDGASN--RGIDDAKRLKEAIGY-APM----EGRYKVFIIDEAHMLTREAFNALLKTLEEP  146 (624)
T ss_pred             cHHH--HHHhcCCCCceEEEecccc--cCHHHHHHHHHHHHh-hhh----cCCceEEEEEChHhCCHHHHHHHHHHhhcc
Confidence            6555  33333333   34433211  112245554444332 232    467799999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.||++|++..++.++|+|||+.++|++++.+++.++|+.++.++|+.+++++++.|++.++||+|+|+++|++++.
T Consensus       147 ~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~  226 (624)
T PRK14959        147 PARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLA  226 (624)
T ss_pred             CCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999998754


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----------
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----------  304 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----------  304 (365)
                      .+. .++.+.  .+........++++++++..+    +...+...+..++..+.++..++..+..++.+-          
T Consensus       227 ~g~~~It~d~V~~~lg~~~~e~vfeLl~AL~~~----D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~  302 (624)
T PRK14959        227 LGESRLTIDGARGVLGLAGQELFLRLMEALAAQ----DCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAA  302 (624)
T ss_pred             hcCCCcCHHHHHHHhCCCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccc
Confidence            332 233222  122223345688888888653    445566667777788999998888777766541          


Q ss_pred             -----CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCCc
Q 017844          305 -----LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDPV  361 (365)
Q Consensus       305 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  361 (365)
                           +..+....+..++.+|+......+++. +++....+++..++++ +|+.||+++..+.
T Consensus       303 ~~~l~i~~~~~~~~~~~A~~~s~~~L~~~l~~-il~~~~~l~~n~n~rl~lE~lLL~l~~~~~  364 (624)
T PRK14959        303 LASLDLPEDEARQWLGWAKRFEPAHIHACWQM-TLEGQRRVLTSLEPAMALELLLLNLAMLPR  364 (624)
T ss_pred             hhhcccCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence                 223344556677777775534443433 5555566778888888 9999999986553

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=5.6e-41  Score=319.41  Aligned_cols=278  Identities=21%  Similarity=0.306  Sum_probs=222.8

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+.+++.|+.+++.++.+| ++|+||+|+||||+|+++++.+.|.....         ..||+.
T Consensus         3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~---------~~pC~~   73 (535)
T PRK08451          3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPS---------STPCDT   73 (535)
T ss_pred             cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCC---------CCCCcc
Confidence            59999999999999999999999999999999999 89999999999999999999998865321         345666


Q ss_pred             ceecccccccccccee---cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANHVE---LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  .....+.+..   +.+.+.  .....+++.+..... .+    ..++++|+||||+|+|+.+++++|+++||++
T Consensus        74 C~~C--~~~~~~~h~dv~eldaas~--~gId~IRelie~~~~-~P----~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp  144 (535)
T PRK08451         74 CIQC--QSALENRHIDIIEMDAASN--RGIDDIRELIEQTKY-KP----SMARFKIFIIDEVHMLTKEAFNALLKTLEEP  144 (535)
T ss_pred             cHHH--HHHhhcCCCeEEEeccccc--cCHHHHHHHHHHHhh-Cc----ccCCeEEEEEECcccCCHHHHHHHHHHHhhc
Confidence            5555  4333444433   333221  122346666654332 22    2467899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.+++||++|+++.+++++++|||..++|.+++.+++.+++..++.++|+.++++++..|++.++||+|++++.|++++.
T Consensus       145 p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~  224 (535)
T PRK08451        145 PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAII  224 (535)
T ss_pred             CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK  303 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~  303 (365)
                      ++. .++.+.  .+.+......++++++++..++    ...+.+.+.++  .|.++..++..+..++..
T Consensus       225 ~~~~~It~~~V~~~lg~~~~~~I~~li~ai~~~d----~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~  287 (535)
T PRK08451        225 YCKNAITESKVADMLGLLDPSKLEDFFQAILNQD----KEKLFELLKEL--EDYEAEMVLDEMMLFLKE  287 (535)
T ss_pred             hcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHhcC----HHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
Confidence            653 344433  2233344678899999888743    34555555555  468999999998888864

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=7.9e-41  Score=326.99  Aligned_cols=336  Identities=18%  Similarity=0.232  Sum_probs=262.8

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||.+|++++||+++++.|..+++.++.+| +||+||+|+||||+|+.+++.++|.....   .     ..+|+.
T Consensus         6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~---~-----~~~Cg~   77 (614)
T PRK14971          6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTA---D-----GEACNE   77 (614)
T ss_pred             HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCC---C-----CCCCCc
Confidence            59999999999999999999999999999999999 99999999999999999999998865321   0     345666


Q ss_pred             ceeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+...   .+..+.+.+.  .....+++.++.+.. .++    .++++|+||||+|.|+.+++++|+++||++
T Consensus        78 C~sC--~~~~~~~~~n~~~ld~~~~--~~vd~Ir~li~~~~~-~P~----~~~~KVvIIdea~~Ls~~a~naLLK~LEep  148 (614)
T PRK14971         78 CESC--VAFNEQRSYNIHELDAASN--NSVDDIRNLIEQVRI-PPQ----IGKYKIYIIDEVHMLSQAAFNAFLKTLEEP  148 (614)
T ss_pred             chHH--HHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhh-Ccc----cCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence            6555  333333   3334433321  222346666655433 332    567899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.||++|+...++.++|+|||..++|.+++.+++..++.+++.++|+.+++++++.|+..++||+|+|++.|+.++.
T Consensus       149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~  228 (614)
T PRK14971        149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVS  228 (614)
T ss_pred             CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----------
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----------  304 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----------  304 (365)
                      +.+ .++.+.  ........+.+|++++++..+    +..++...+.+++..|.+|..|+..+..++..-          
T Consensus       229 y~~~~It~~~V~~~l~~~~~~~iF~L~dai~~~----~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~  304 (614)
T PRK14971        229 FTGGNITYKSVIENLNILDYDYYFRLTDALLAG----KVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQ  304 (614)
T ss_pred             hccCCccHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence            543 344322  111223346779999999874    456677778899999999999999988877651          


Q ss_pred             ---CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          305 ---LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       305 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                         +.......+.+.+.+|+.....-.+. .+.+....+|++..++. +|+.|++++..
T Consensus       305 ll~v~~~~~~~~~~qa~~~s~~~L~~~l~-~l~e~d~~lK~~~n~~l~lE~lllkL~~~  362 (614)
T PRK14971        305 LLEVGESIRQRYLEQAQKCPMSFLYRALK-LCNQCDLNYRASKNKRLLVELTLIQLAQL  362 (614)
T ss_pred             cccCCHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence               23445566777777887663333333 25555556666777777 99999998775

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.8e-40  Score=315.26  Aligned_cols=279  Identities=20%  Similarity=0.243  Sum_probs=228.9

Q ss_pred             ccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (365)
Q Consensus         4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~   82 (365)
                      .+||||++|++++||+++++.|+.++..++.+| ++|+||+|+||||+|+++++.+.|....          ..+|+.|.
T Consensus         5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~----------~~~cg~C~   74 (504)
T PRK14963          5 YQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGED----------PKPCGECE   74 (504)
T ss_pred             HHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCC----------CCCCCcCh
Confidence            399999999999999999999999999999999 7999999999999999999999875432          12333333


Q ss_pred             ecc-ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCce
Q 017844           83 DLE-LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (365)
Q Consensus        83 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~  161 (365)
                      .|. .....+.++.++.+.+.  .....++++...+.. .++    .++++|+||||+|.++..+++.|++.+++++.++
T Consensus        75 sc~~i~~~~h~dv~el~~~~~--~~vd~iR~l~~~~~~-~p~----~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t  147 (504)
T PRK14963         75 SCLAVRRGAHPDVLEIDAASN--NSVEDVRDLREKVLL-APL----RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHV  147 (504)
T ss_pred             hhHHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhh-ccc----cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCE
Confidence            330 02233444555555422  222346665444433 232    4678999999999999999999999999999899


Q ss_pred             eEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 017844          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP  241 (365)
Q Consensus       162 ~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~  241 (365)
                      .||++++++.++.++++|||..++|.+++.+++..++.+++.++|+.++++++..|++.++||+|++++.|++++.++..
T Consensus       148 ~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~  227 (504)
T PRK14963        148 IFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTP  227 (504)
T ss_pred             EEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877555


Q ss_pred             CCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 017844          242 FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK  303 (365)
Q Consensus       242 ~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~  303 (365)
                      ++.+.  .+....+++.++++++++..+    +..++...+.+++..|.+|..|+..+.+++..
T Consensus       228 It~~~V~~~l~~~~~~~if~Li~al~~~----d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~  287 (504)
T PRK14963        228 VTRKQVEEALGLPPQERLRGIAAALAQG----DAAEALSGAAQLYRDGFAARTLVEGLLEAFRA  287 (504)
T ss_pred             CCHHHHHHHHCCCcHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            66544  344556788999999999874    45677777888999999999999999998874

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=9.2e-41  Score=323.02  Aligned_cols=338  Identities=17%  Similarity=0.196  Sum_probs=257.5

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+.+++.|+.+++.++.+| ++|+||+|+||||+|+++++.+.|.....         ..||+.
T Consensus         5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---------~~pC~~   75 (563)
T PRK06647          5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---------PMPCGE   75 (563)
T ss_pred             HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---------CCCCcc
Confidence            37899999999999999999999999999999999 99999999999999999999998864221         346666


Q ss_pred             ceeccccccccccceecCCCCcCc-cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844           81 NIDLELTTLSSANHVELSPSDAGF-QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~  159 (365)
                      |..|  ..+....++++..-+... .....++++.+.+. ..+.    .++++|+||||+|.|+.+++++|++++|+++.
T Consensus        76 C~~C--~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~-~~p~----~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~  148 (563)
T PRK06647         76 CSSC--KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIM-FPPA----SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPP  148 (563)
T ss_pred             chHH--HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHH-hchh----cCCCEEEEEEChhhcCHHHHHHHHHhhccCCC
Confidence            6555  433333333322111111 11223555444433 3332    56789999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      ++.||++|+++.++.++|+|||+.++|.+++.+++.++|.+++.++|+.++++++..|++.++||+|.|+++|++++.+.
T Consensus       149 ~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~  228 (563)
T PRK06647        149 YIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFS  228 (563)
T ss_pred             CEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887664


Q ss_pred             C-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----C--CH---
Q 017844          240 Y-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----L--DA---  307 (365)
Q Consensus       240 ~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----~--~~---  307 (365)
                      . .++.+.  .+.....+..++++++++..+    +..++...+..++..|.++..++..+.+++.+-    .  .+   
T Consensus       229 ~~~It~e~V~~llg~~~~~~if~LidaI~~~----D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~  304 (563)
T PRK06647        229 DSDITLEQIRSKMGLTGDEFLEKLASSILNE----DAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAF  304 (563)
T ss_pred             CCCCCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhh
Confidence            3 333222  122333456788899988874    556777778888889999999999888877651    1  11   


Q ss_pred             --HHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844          308 --EIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP  360 (365)
Q Consensus       308 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  360 (365)
                        .....+.+.+..|+......++.. +.+....+|...++++ +|+.|++++...
T Consensus       305 l~~~~e~l~k~~~~~s~~~L~~~l~~-Llea~~~lK~n~~~~l~lE~llikl~~~~  359 (563)
T PRK06647        305 IGIKAERLPEKLREFDLSQIERAISV-LLETYRDLQFSVNPRYELEINFSKILRLK  359 (563)
T ss_pred             ccccHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence              112334555556765533333332 5556666777888888 999999998643

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1e-40  Score=318.29  Aligned_cols=334  Identities=19%  Similarity=0.203  Sum_probs=250.9

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|++||||++|++++||+.+++.|+.++..++.+| ++|+||+|+||||+|+.+|+.++|.....         ..||+.
T Consensus         5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~---------~~pc~~   75 (486)
T PRK14953          5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE---------GEPCGK   75 (486)
T ss_pred             HHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC---------CCCCCc
Confidence            79999999999999999999999999999999999 89999999999999999999998753221         246666


Q ss_pred             ceecccccccc---ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSS---ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..   .+.+++.+.+.  .....++++.+. ....|.    .++++|+||||+|.|+.+++++|+++++++
T Consensus        76 c~nc--~~i~~g~~~d~~eidaas~--~gvd~ir~I~~~-~~~~P~----~~~~KVvIIDEad~Lt~~a~naLLk~LEep  146 (486)
T PRK14953         76 CENC--VEIDKGSFPDLIEIDAASN--RGIDDIRALRDA-VSYTPI----KGKYKVYIIDEAHMLTKEAFNALLKTLEEP  146 (486)
T ss_pred             cHHH--HHHhcCCCCcEEEEeCccC--CCHHHHHHHHHH-HHhCcc----cCCeeEEEEEChhhcCHHHHHHHHHHHhcC
Confidence            5544  33333   33344433221  112235554443 334443    567899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.||++|++..+++++++|||+.+.|.+++.+++..++..++.++|+.+++++++.+++.++||+|.|++.|++++.
T Consensus       147 p~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~  226 (486)
T PRK14953        147 PPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQAST  226 (486)
T ss_pred             CCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999988999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----CC--HH
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----LD--AE  308 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----~~--~~  308 (365)
                      ++. .++.+.  .+.....+..++++++++..+    +...+...+.+++..|.++..++..+..++.+-    ..  ..
T Consensus       227 ~~~~~It~~~V~~~lg~~~~~~vf~Li~ai~~~----d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~  302 (486)
T PRK14953        227 YGEGKVTIKVVEEFLGIVSQESVRKFLNLLLES----DVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPE  302 (486)
T ss_pred             hcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChh
Confidence            643 233222  223344566789999999874    456677777888889999999999998877651    11  11


Q ss_pred             H-H--HHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844          309 I-K--HEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP  360 (365)
Q Consensus       309 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  360 (365)
                      . .  .+.... ..++..-...+.+ .+.+....++. .+|+. +|+.|||++..+
T Consensus       303 ~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~~~~~l~~-~~~~~~~E~~ll~l~~~~  355 (486)
T PRK14953        303 EVFQVEDFYRK-LEKPLEALLYLED-VINKAFSEART-RDPLRAYELAILKLLYVK  355 (486)
T ss_pred             hhcchHHHHHH-hcCCHHHHHHHHH-HHHHHHHHHhc-cChhHHHHHHHHHHHhhC
Confidence            0 0  011111 2232221222222 24445566777 77777 999999998543

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=6.6e-41  Score=326.29  Aligned_cols=333  Identities=20%  Similarity=0.275  Sum_probs=249.6

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+.+++.|+.++..++.+| +||+||+|+|||++|+.+|+.+.|......        ..||+.
T Consensus         7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~--------~~pC~~   78 (725)
T PRK07133          7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL--------LEPCQE   78 (725)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC--------CCchhH
Confidence            69999999999999999999999999999999999 899999999999999999999988653210        345555


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                      |..+  . ..+.+.+++.+.  +......++++++.+.. .|    ..++++|+||||+|.|+.+++++|+++||+|+.+
T Consensus        79 C~~~--~-~~~~Dvieidaa--sn~~vd~IReLie~~~~-~P----~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~  148 (725)
T PRK07133         79 CIEN--V-NNSLDIIEMDAA--SNNGVDEIRELIENVKN-LP----TQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKH  148 (725)
T ss_pred             HHHh--h-cCCCcEEEEecc--ccCCHHHHHHHHHHHHh-ch----hcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCc
Confidence            5433  1 122233333321  11222346777666543 33    2578899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      +.||++|+++.+++++|+|||+.++|.+++.+++.++|..++.++|+.++++++..+++.++|++|.|++++++++.++.
T Consensus       149 tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~  228 (725)
T PRK07133        149 VIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGN  228 (725)
T ss_pred             eEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876542


Q ss_pred             -CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC----CH-H----
Q 017844          241 -PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL----DA-E----  308 (365)
Q Consensus       241 -~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~----~~-~----  308 (365)
                       .++.+.  .+.+......++++++++..+    +...+...+.+++..|.+|..++..+...+.+-+    .+ .    
T Consensus       229 ~~It~e~V~ellg~~~~e~If~Ll~aI~~k----d~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~  304 (725)
T PRK07133        229 NKITLKNVEELFGLVSNENLINLLNLLYSK----DIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLE  304 (725)
T ss_pred             CCCCHHHHHHHHcCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhc
Confidence             222221  122233445688888888774    4566667778888899999999888877765511    11 1    


Q ss_pred             --HHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          309 --IKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       309 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                        ...++...  +++......+++ .+.+....++....+++ +|+.+|+++..
T Consensus       305 ~~d~~~l~~~--~~s~~~l~~~le-~i~~~~~~L~~n~n~~l~lE~lll~L~~~  355 (725)
T PRK07133        305 YYSEEDLEKL--KIDDDFAYKFIE-ILFDLLKDLKISDNPNDTLEILIIKLLAL  355 (725)
T ss_pred             cCCHHHHHHh--cCCHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence              11222221  233221222222 35555667777788877 99999998754

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=8.4e-41  Score=319.71  Aligned_cols=282  Identities=20%  Similarity=0.278  Sum_probs=227.1

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+.+++.|..++..++.+| ++|+||+|+||||+|+.+|+.+.|..+..         ..||+.
T Consensus         5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~---------~~~Cg~   75 (605)
T PRK05896          5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKD---------GDCCNS   75 (605)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCcc
Confidence            59999999999999999999999999999999998 99999999999999999999998866432         345666


Q ss_pred             ceecc-ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844           81 NIDLE-LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus        81 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~  159 (365)
                      |..|. .....+++.+++.+.+.  .....+++++..+.. .+.    .++++|+||||+|.|+.+++++|+++||+++.
T Consensus        76 C~sCr~i~~~~h~DiieIdaas~--igVd~IReIi~~~~~-~P~----~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~  148 (605)
T PRK05896         76 CSVCESINTNQSVDIVELDAASN--NGVDEIRNIIDNINY-LPT----TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPK  148 (605)
T ss_pred             cHHHHHHHcCCCCceEEeccccc--cCHHHHHHHHHHHHh-chh----hCCcEEEEEechHhCCHHHHHHHHHHHHhCCC
Confidence            54440 02223344445543321  122346666655543 232    45679999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      ++.||++|+.+.+++++++|||+.++|.+++.+++..+|..++.++|+.++++++..+++.++||+|.|++.|+.++.+.
T Consensus       149 ~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~  228 (605)
T PRK05896        149 HVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK  228 (605)
T ss_pred             cEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987765


Q ss_pred             CC-CCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 017844          240 YP-FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK  303 (365)
Q Consensus       240 ~~-~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~  303 (365)
                      +. ++.+.  .+.+......++++++++..+    +...+...+.+++..|.+|..+++.+...+.+
T Consensus       229 ~~~It~e~V~ellg~~~~~~Vf~Ll~AI~~k----d~~~al~~l~~Ll~~ge~~~~il~~L~~~~RD  291 (605)
T PRK05896        229 NSEIDIEDINKTFGLVDNNKKINLIELIQKN----DIEELRNLINELESKGINFEAFCRDLINLLID  291 (605)
T ss_pred             CCCCCHHHHHHHhccCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            42 33221  111222335678888888763    45667777888889999999999999888766

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2.1e-40  Score=321.99  Aligned_cols=344  Identities=17%  Similarity=0.208  Sum_probs=263.6

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .++||||++|++++||+.+++.|+.++..++.+| ++|+||+|+||||+|+.+|+.++|.....-....... ..||+.|
T Consensus         6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~-~~~Cg~C   84 (620)
T PRK14954          6 IARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV-TEPCGEC   84 (620)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc-CCCCccC
Confidence            4789999999999999999999999999999999 9999999999999999999999986421100000011 3577777


Q ss_pred             eeccccccccccceecCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           82 IDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                      ..|  ..+..+.++++..-+. .......++++.+.+.. .++    .++++|+||||+|.|+.++++.|+++||+++.+
T Consensus        85 ~sC--~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~-~P~----~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~  157 (620)
T PRK14954         85 ESC--RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRY-GPQ----KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPH  157 (620)
T ss_pred             HHH--HHHhccCCCCeEEecccccCCHHHHHHHHHHHHh-hhh----cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCC
Confidence            666  4444444444322121 11112345665555443 232    567899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-  239 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~-  239 (365)
                      +.||+++++..++.++|+|||+.++|.+++.+++..++.+++.++|+.+++++++.+++.++||+|.+++.+++++.+. 
T Consensus       158 tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~  237 (620)
T PRK14954        158 AIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSV  237 (620)
T ss_pred             eEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988775 


Q ss_pred             -----CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh-----C--
Q 017844          240 -----YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR-----L--  305 (365)
Q Consensus       240 -----~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~-----~--  305 (365)
                           ..++.+.  .+.....++.+|++++++..+    +..++...+.+++..|.+|..++..+.+++..-     +  
T Consensus       238 ~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~----d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~  313 (620)
T PRK14954        238 GSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAEN----DAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRS  313 (620)
T ss_pred             ccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence                 1233221  222334567889999999874    456677778888899999999999888877651     1  


Q ss_pred             ------CHHHHHHHHHHHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhcccCCC
Q 017844          306 ------DAEIKHEVCHWAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDP  360 (365)
Q Consensus       306 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  360 (365)
                            .+.....+.+.+.+|+.. +.+++-  .+.+....+|+...+++ +|+.|++++..+
T Consensus       314 ~~l~~~~~~v~~~l~~qA~~fs~~~L~~~l~--~l~e~d~~LKtn~n~~l~lEllLlkl~~~~  374 (620)
T PRK14954        314 TRLIERPESVKERYQQSAGGLTPAAVMQMTD--FLMKTQGELKFQFEYQFRFELALLRLIELV  374 (620)
T ss_pred             cccccCCHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence                  123356677888888866 444333  25555556677777777 999999987654

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.3e-39  Score=318.41  Aligned_cols=339  Identities=20%  Similarity=0.239  Sum_probs=260.3

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|.+||||++|++++||+.+++.|+.++..++.+| +||+||+|+||||+|+++|+.++|......      . ..||+.
T Consensus         5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~------~-~~~Cg~   77 (620)
T PRK14948          5 PLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP------T-PEPCGK   77 (620)
T ss_pred             hHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC------C-CCCCcc
Confidence            69999999999999999999999999999998876 999999999999999999999988642110      0 246666


Q ss_pred             ceeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.+   +++.+..  ......+++++.... ..++    .++++|+||||+|.|+.+++++|+++||++
T Consensus        78 C~~C--~~i~~g~h~D~~ei~~~~--~~~vd~IReii~~a~-~~p~----~~~~KViIIDEad~Lt~~a~naLLK~LEeP  148 (620)
T PRK14948         78 CELC--RAIAAGNALDVIEIDAAS--NTGVDNIRELIERAQ-FAPV----QARWKVYVIDECHMLSTAAFNALLKTLEEP  148 (620)
T ss_pred             cHHH--HHHhcCCCccEEEEeccc--cCCHHHHHHHHHHHh-hChh----cCCceEEEEECccccCHHHHHHHHHHHhcC
Confidence            5444  44444433   3443321  122235677765543 3332    567899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.||++|+++.++.++|+|||+.++|.+++.+++..++..++.++|+.++++++..+++.++||+|+|+++|+.++.
T Consensus       149 p~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL  228 (620)
T PRK14948        149 PPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSL  228 (620)
T ss_pred             CcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----C------
Q 017844          238 QQYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR----L------  305 (365)
Q Consensus       238 ~~~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~----~------  305 (365)
                      +.+.++.+.  .+.....+..++++++++..+    +...+...+.+++..|.++..++.++..++.+-    .      
T Consensus       229 ~~~~It~e~V~~lvg~~~e~~i~~Ll~ai~~~----d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~  304 (620)
T PRK14948        229 LPGPITPEAVWDLLGAVPEQDLLNLLKALASN----DPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPD  304 (620)
T ss_pred             ccCCCCHHHHHHHhcCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            765554333  122233456678888888864    344555666777888999999999888877651    1      


Q ss_pred             ----CHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCCCc
Q 017844          306 ----DAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDPV  361 (365)
Q Consensus       306 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  361 (365)
                          .......+...+..|+..-..-+.. .+.+....+|++.+++. +|..|+++...+.
T Consensus       305 l~~i~~d~~~~l~~~A~~~s~~~L~~~i~-~L~eae~~LK~n~nprL~LE~lLl~l~~~~~  364 (620)
T PRK14948        305 LVAVSQQTWDELCKLAKQINLERILQWQQ-HLKGSEYQLKNSTQPRLWLEVTLLGLLPSAF  364 (620)
T ss_pred             hhhcCHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHHHHhcCCCccHHHHHHHHHhhccCc
Confidence                1122334556666665442222222 35666677888889998 9999999987654

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=9.7e-40  Score=307.16  Aligned_cols=343  Identities=16%  Similarity=0.206  Sum_probs=258.7

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccc-eeccccceecCCC
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKV-KVENKTWKIDAGS   79 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i-~~~~~~~~~~~~~   79 (365)
                      ..++||||++|++++||+.+++.|+.++.+++.+| ++|+||+|+||||+|+++|+.++|.....- ... ... ..||+
T Consensus         5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~-~~~-~~~c~   82 (397)
T PRK14955          5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL-QEV-TEPCG   82 (397)
T ss_pred             HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc-ccC-CCCCC
Confidence            36799999999999999999999999999999999 999999999999999999999998642110 000 001 35777


Q ss_pred             cceeccccccccccceecCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           80 RNIDLELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                      .|..|  ..+..+.+.++..-+. .......+++....+.. .+.    .++++|+||||+|.|+.++++.|++++|+++
T Consensus        83 ~c~~c--~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~-~p~----~~~~kvvIIdea~~l~~~~~~~LLk~LEep~  155 (397)
T PRK14955         83 ECESC--RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRY-GPQ----KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP  155 (397)
T ss_pred             CCHHH--HHHhcCCCCCeEeecccccCCHHHHHHHHHHHhh-chh----cCCeEEEEEeChhhCCHHHHHHHHHHHhcCC
Confidence            77665  4444443333221111 11112345555544432 232    5678999999999999999999999999999


Q ss_pred             CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~  238 (365)
                      ..+.||+++++..++.++++|||..++|.+++.+++.+++..++.++|+.+++++++.+++.++||+|.+++.++++..+
T Consensus       156 ~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~  235 (397)
T PRK14955        156 PHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAF  235 (397)
T ss_pred             CCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999999998889999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             CC------CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----h-
Q 017844          239 QY------PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----R-  304 (365)
Q Consensus       239 ~~------~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-----~-  304 (365)
                      ..      .++.+.  .+.....+..+|++++++..+    +..++...+.+++..+.+|..++..+..++..     . 
T Consensus       236 ~~~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~----~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~  311 (397)
T PRK14955        236 SVESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADG----DAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNL  311 (397)
T ss_pred             ccccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            42      233221  223344567889999999874    45666677788888999999999988887765     1 


Q ss_pred             ------CCHH-HHHHHHHHHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          305 ------LDAE-IKHEVCHWAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       305 ------~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                            ..+. ....+.+.+.+|+.. +.++ +. .+.+....+|+...+++ +|+.+++++.-
T Consensus       312 ~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~-l~-~l~e~d~~lK~~~~~~l~lE~lll~l~~~  373 (397)
T PRK14955        312 RSTRLVERPDAVRERYERDAAKFSPEVIMQM-TD-LLLQTQKELKFQFEYQFRFELALLKLIEI  373 (397)
T ss_pred             cccccccCCHHHHHHHHHHHHhCCHHHHHHH-HH-HHHHHHHHHhcCCCccHHHHHHHHHHHhh
Confidence                  1111 234667778888766 4444 33 25555556666677777 88888887653

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=1.4e-39  Score=308.77  Aligned_cols=334  Identities=19%  Similarity=0.277  Sum_probs=248.9

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++||||++|++++||+.+++.|+.+++.++.+| ++|+||+|+||||+|+.+++.+.|.....        +..||+.
T Consensus         6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~--------~~~~c~~   77 (451)
T PRK06305          6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTE--------DQEPCNQ   77 (451)
T ss_pred             HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCccc--------CCCCCcc
Confidence            48999999999999999999999999999999998 99999999999999999999998864321        0345555


Q ss_pred             ceecccccccccc---ceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSAN---HVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.   ++++...+.  .....++++.+.+... +    ..++++|+||||+|.|+.++++.|+++||++
T Consensus        78 c~~C--~~i~~~~~~d~~~i~g~~~--~gid~ir~i~~~l~~~-~----~~~~~kvvIIdead~lt~~~~n~LLk~lEep  148 (451)
T PRK06305         78 CASC--KEISSGTSLDVLEIDGASH--RGIEDIRQINETVLFT-P----SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP  148 (451)
T ss_pred             cHHH--HHHhcCCCCceEEeecccc--CCHHHHHHHHHHHHhh-h----hcCCCEEEEEecHHhhCHHHHHHHHHHhhcC
Confidence            5444  3333332   333332211  1112344444333221 1    2457799999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.||++|++..++.++++|||..++|.+++.+++.+++..++.++|+.+++++++.|+..++||+|.|++.++.++.
T Consensus       149 ~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~  228 (451)
T PRK06305        149 PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVG  228 (451)
T ss_pred             CCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             cC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 017844          238 QQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVC  314 (365)
Q Consensus       238 ~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~  314 (365)
                      +. ..++.+.  .+.....++.++++++++..    ++..++...+.+++..|.+|..++..+.+++..-+.-+....+.
T Consensus       229 ~~~~~It~~~V~~l~~~~~~~~vf~L~~ai~~----~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~  304 (451)
T PRK06305        229 LFPKSLDPDSVAKALGLLSQDSLYTLDEAITT----QNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLS  304 (451)
T ss_pred             hccCCcCHHHHHHHHCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            52 2233222  22334456788999988876    34667777788888899999999988888776633222233456


Q ss_pred             HHHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844          315 HWAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS  358 (365)
Q Consensus       315 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (365)
                      +.+..|+.. +.+++-.  +.+....+|+...+.. +|..+++++.
T Consensus       305 ~~a~~~s~~~L~~ii~~--l~e~d~~lk~~~~~k~~lE~lll~l~~  348 (451)
T PRK06305        305 SVATKYSSEQLLEIIDF--LGESAKHIQLTIFEKTFLETVIIHLIR  348 (451)
T ss_pred             HHHHhCCHHHHHHHHHH--HHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            666677655 3333332  3444444444444443 7777777653

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=9e-39  Score=303.46  Aligned_cols=283  Identities=20%  Similarity=0.318  Sum_probs=227.2

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|.+||||++|++++||+++.+.|+..+..++.+| ++|+||||+||||+|+++|+.+.|.....         ..||+.
T Consensus         3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~---------~~pc~~   73 (472)
T PRK14962          3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG---------VEPCNE   73 (472)
T ss_pred             hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---------CCCCcc
Confidence            38899999999999999999999999999999998 89999999999999999999998754321         345555


Q ss_pred             ceeccccccc---cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLS---SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ....   ....+++.+....  ....++++.... ...+.    .++++|+||||+|.|+.++++.|++.++++
T Consensus        74 c~~c--~~i~~g~~~dv~el~aa~~~--gid~iR~i~~~~-~~~p~----~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p  144 (472)
T PRK14962         74 CRAC--RSIDEGTFMDVIELDAASNR--GIDEIRKIRDAV-GYRPM----EGKYKVYIIDEVHMLTKEAFNALLKTLEEP  144 (472)
T ss_pred             cHHH--HHHhcCCCCccEEEeCcccC--CHHHHHHHHHHH-hhChh----cCCeEEEEEEChHHhHHHHHHHHHHHHHhC
Confidence            5443  2222   2234455443221  122355544333 33332    457799999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.+|++|+++.++.++++|||..+.|.+++.+++..++++++..+|+.+++++++.|++.++||+|.+++.|+.++.
T Consensus       145 ~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~  224 (472)
T PRK14962        145 PSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWK  224 (472)
T ss_pred             CCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            99999999999888999999999999999999999999999999999999999999999999999999999999999776


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCC
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLD  306 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~  306 (365)
                      ++. .++.+.  .+.....++.++++++++..    ++...+...+.+++..|.+|..+++++.......+.
T Consensus       225 ~~~~~It~e~V~~~l~~~~~~~i~~li~si~~----~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~  292 (472)
T PRK14962        225 FSEGKITLETVHEALGLIPIEVVRDYINAIFN----GDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE  292 (472)
T ss_pred             hcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence            543 344333  12233445778889988877    456778888899999999999999999999887543

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=6.3e-39  Score=314.63  Aligned_cols=336  Identities=20%  Similarity=0.238  Sum_probs=261.0

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      |.+||||++|++++||+++++.|+.++..++.+| ++|+||+|+||||+++.+++.++|......        ..||+.|
T Consensus         6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--------~~~c~~c   77 (585)
T PRK14950          6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--------GRPCGTC   77 (585)
T ss_pred             HHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--------CCCCccC
Confidence            7799999999999999999999999999999998 899999999999999999999987543110        2455555


Q ss_pred             eeccccccccccc---eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           82 IDLELTTLSSANH---VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        82 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                      ..|  ..+..+.+   +++.+..  ......++++++.+. ..+    ..++++|+||||+|.|+.++++.|+++||+++
T Consensus        78 ~~c--~~i~~~~~~d~~~i~~~~--~~~vd~ir~ii~~~~-~~p----~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp  148 (585)
T PRK14950         78 EMC--RAIAEGSAVDVIEMDAAS--HTSVDDAREIIERVQ-FRP----ALARYKVYIIDEVHMLSTAAFNALLKTLEEPP  148 (585)
T ss_pred             HHH--HHHhcCCCCeEEEEeccc--cCCHHHHHHHHHHHh-hCc----ccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC
Confidence            444  33333333   3444321  122234566554433 233    24678999999999999999999999999999


Q ss_pred             CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~  238 (365)
                      .++.||+++++..++.++++|||..+.|.+++.+++..++..++.++|+.++++++..+++.++||+|.+++.|++++.+
T Consensus       149 ~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y  228 (585)
T PRK14950        149 PHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATT  228 (585)
T ss_pred             CCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998775


Q ss_pred             CC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH------------
Q 017844          239 QY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK------------  303 (365)
Q Consensus       239 ~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~------------  303 (365)
                      .. .++.+.  .+.....+..++++++++..+    +..++...+..++..|.++..++..+.+++..            
T Consensus       229 ~~~~It~e~V~~ll~~s~~~~vf~Lidal~~~----d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~  304 (585)
T PRK14950        229 YGGEISLSQVQSLLGISGDEEVKALAEALLAK----DLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSL  304 (585)
T ss_pred             cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence            33 333322  223334567889999999874    45667777888889999999999988887654            


Q ss_pred             -hCCHHHHHHHHHHHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhcccCCCc
Q 017844          304 -RLDAEIKHEVCHWAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDPV  361 (365)
Q Consensus       304 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  361 (365)
                       .+.+.....+.+.+..|+.. +.+.+-.  +.+....+|++..+.+ +|+.|++++-.++
T Consensus       305 l~i~p~~~~~~~~qa~~~s~~~L~~~l~~--l~~~D~~lK~~~~~~l~lE~~l~~~~~~~~  363 (585)
T PRK14950        305 LDLTADEKAALQKVSQIANLEALTKWVKA--FSQLDFQLRTTSYGQLPLELAVIEALLVPV  363 (585)
T ss_pred             ccCCHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHhcCCCchHHHHHHHHHHhcCCc
Confidence             12334456667777778766 4444333  4455557777777777 9999999987764

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=100.00  E-value=3e-38  Score=295.34  Aligned_cols=333  Identities=21%  Similarity=0.287  Sum_probs=254.6

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|++||||++|++++||+.+++.+..++..++.+| ++|+||+|+|||++++.+++.+.|+....         ..||+.
T Consensus         3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~---------~~~c~~   73 (355)
T TIGR02397         3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD---------GEPCNE   73 (355)
T ss_pred             cHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCC
Confidence            79999999999999999999999999999999998 99999999999999999999998764211         235555


Q ss_pred             ceeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+   .++.+.+.+.  .....+++++..+. ..+    ..++++|+||||++.++..+++.|++.++++
T Consensus        74 c~~c--~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-~~p----~~~~~~vviidea~~l~~~~~~~Ll~~le~~  144 (355)
T TIGR02397        74 CESC--KEINSGSSLDVIEIDAASN--NGVDDIREILDNVK-YAP----SSGKYKVYIIDEVHMLSKSAFNALLKTLEEP  144 (355)
T ss_pred             CHHH--HHHhcCCCCCEEEeecccc--CCHHHHHHHHHHHh-cCc----ccCCceEEEEeChhhcCHHHHHHHHHHHhCC
Confidence            5444  223222   2333333211  12223556665543 333    2567799999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.+|++++++.++.++++|||..+.|++++.+++.+++..++.++|+.++++++..+++.++||+|.+++.+++++.
T Consensus       145 ~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~  224 (355)
T TIGR02397       145 PEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLIS  224 (355)
T ss_pred             ccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence            98999999999988899999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h------
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R------  304 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~------  304 (365)
                      ++. .++.+.  .+.....+..++++++++..+    +..++...+.++...|.+|..++..+..++..    +      
T Consensus       225 ~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~~~----~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~  300 (355)
T TIGR02397       225 FGNGNITYEDVNELLGLVDDEKLIELLEAILNK----DTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNL  300 (355)
T ss_pred             hcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            653 223222  122233456788999998863    45666677788888899999999988887765    1      


Q ss_pred             --CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhccc
Q 017844          305 --LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRAN  357 (365)
Q Consensus       305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  357 (365)
                        +.+.....+.+.+..|+..-...++. .+.+.....|+...+++ ++..++++|
T Consensus       301 ~~i~~~~~~~l~~~a~~~s~~~L~~~l~-~l~~~~~~lk~~~~~~l~le~l~~~~~  355 (355)
T TIGR02397       301 LAVLESEQEFLKELALKLSLEFLLRLLD-ILLEALKDLRFSNDPRIWLEMTLLRLL  355 (355)
T ss_pred             cccCHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence              12223355566777777664444343 35666656666777777 888888875

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.9e-37  Score=288.30  Aligned_cols=328  Identities=20%  Similarity=0.256  Sum_probs=248.5

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      |+|++||||++|++++||+.+.+.+..+++.++.+| ++|+||+|+|||++++++++.+.++....   .+..+      
T Consensus         5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~~~~~------   75 (367)
T PRK14970          5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDD---PNEDF------   75 (367)
T ss_pred             HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---CCCCC------
Confidence            679999999999999999999999999999999887 99999999999999999999887743210   00000      


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~  159 (365)
                         .        ...+++...  .......+++.++.+.. .+    ..++++|++|||++.++..+++.|++.+++++.
T Consensus        76 ---~--------~~~~~l~~~--~~~~~~~i~~l~~~~~~-~p----~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~  137 (367)
T PRK14970         76 ---S--------FNIFELDAA--SNNSVDDIRNLIDQVRI-PP----QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPA  137 (367)
T ss_pred             ---C--------cceEEeccc--cCCCHHHHHHHHHHHhh-cc----ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCC
Confidence               0        001222211  11112345555555432 22    245779999999999999999999999999988


Q ss_pred             ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      ++.+|++++...++.++++|||..++|.+++.+++..++..++.++|+.+++++++.++..++||+|.+++.++.++.+.
T Consensus       138 ~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~  217 (367)
T PRK14970        138 HAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFC  217 (367)
T ss_pred             ceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999988764


Q ss_pred             C-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h--------
Q 017844          240 Y-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R--------  304 (365)
Q Consensus       240 ~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~--------  304 (365)
                      . .++.+.  .+.....+..++++++++..+    +..++...+.+++..|.+|..++..+.+++..    +        
T Consensus       218 ~~~it~~~v~~~~~~~~~~~if~l~~ai~~~----~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l  293 (367)
T PRK14970        218 GKNITRQAVTENLNILDYDTYINVTDLILEN----KIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALL  293 (367)
T ss_pred             CCCCCHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccc
Confidence            3 233221  122233456789999999874    44556666777888899999999999887665    1        


Q ss_pred             -CCHHHHHHHHHHHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhcccCCCc
Q 017844          305 -LDAEIKHEVCHWAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSDPV  361 (365)
Q Consensus       305 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  361 (365)
                       +.+.....+.+.+.+|+.. +.+.+-  .+.+....+|++..+.. +|+.|+++++.-.
T Consensus       294 ~~~~~~~~~~~~~a~~~s~~~L~~~l~--~l~~~d~~lK~~~~~~l~lE~~l~~l~~~~~  351 (367)
T PRK14970        294 EVGEQAKKRYEVQSQKVSQSFLLSGID--IANDCDLKYKLSKNQRLLVELALMQLASINF  351 (367)
T ss_pred             cCCHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHHhcCCChhHHHHHHHHHHhhccc
Confidence             1234455667777778766 444333  25555555566556665 9999999887543

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=100.00  E-value=1.4e-36  Score=282.23  Aligned_cols=311  Identities=27%  Similarity=0.425  Sum_probs=236.9

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC--ccceeccccceecCC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAG   78 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~i~~~~~~~~~~~~   78 (365)
                      |+|++||||++|++++|++.+++.|..++..+..+|++|+||+|+||||+++++++++.+...  ..+++++..+ .   
T Consensus         3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~-~---   78 (337)
T PRK12402          3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF-F---   78 (337)
T ss_pred             CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh-h---
Confidence            789999999999999999999999999999998889999999999999999999999876542  1233333221 0   


Q ss_pred             CcceeccccccccccceecCCCC--cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           79 SRNIDLELTTLSSANHVELSPSD--AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                      .....   .....+.+.......  .+......+++.++......+.    .+.++++||||++.++.+.++.|++++++
T Consensus        79 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vlilDe~~~l~~~~~~~L~~~le~  151 (337)
T PRK12402         79 DQGKK---YLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL----SADYKTILLDNAEALREDAQQALRRIMEQ  151 (337)
T ss_pred             hcchh---hhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC----CCCCcEEEEeCcccCCHHHHHHHHHHHHh
Confidence            00000   000000000000000  0001112344445555544443    45568999999999999999999999999


Q ss_pred             hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                      ++..++||++++.+.++.+++++||..+.|.+++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++.++
T Consensus       152 ~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~  231 (337)
T PRK12402        152 YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA  231 (337)
T ss_pred             ccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88888999999988889999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hcCCCCCCCC--C-CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 017844          237 VQQYPFKDNQ--A-IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLKRLDAEIKHE  312 (365)
Q Consensus       237 ~~~~~~~~~~--~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~~~~~~~~~~  312 (365)
                      .....++.+.  . +.....+..++++++++..+    +..+++..+++++ .+|.++..|++.+......+++.+...+
T Consensus       232 ~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~----~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~l~~  307 (337)
T PRK12402        232 LAAGEITMEAAYEALGDVGTDEVIESLLDAAEAG----DFTDARKTLDDLLIDEGLSGGEVLEELLRVARSRYRGDNLAR  307 (337)
T ss_pred             HcCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCHHHHHH
Confidence            6555555444  1 22224578899999998774    5677888888887 7899999999998877766678888888


Q ss_pred             HHHHHHHhhhhhHH
Q 017844          313 VCHWAAYYVSISFQ  326 (365)
Q Consensus       313 ~~~~~~~~~~~~~~  326 (365)
                      +.+.++.+|.++..
T Consensus       308 ~~~~l~~~d~~lk~  321 (337)
T PRK12402        308 LHRLAADADARLTD  321 (337)
T ss_pred             HHHHHHHHHHHHHc
Confidence            88888877776543

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=100.00  E-value=7.4e-36  Score=275.25  Aligned_cols=305  Identities=31%  Similarity=0.508  Sum_probs=241.4

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      +|++||||++|++++|++++++.++.+++.+..+|++|+||+|+||||+++.+++++.++....                
T Consensus         6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~----------------   69 (319)
T PRK00440          6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRE----------------   69 (319)
T ss_pred             ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc----------------
Confidence            6999999999999999999999999999998888999999999999999999999886543210                


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCce
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~  161 (365)
                                 .++++.+++...  ...+++.+..++...+.   ....+++++|||++.++...++.|+++++.++.++
T Consensus        70 -----------~~i~~~~~~~~~--~~~~~~~i~~~~~~~~~---~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~  133 (319)
T PRK00440         70 -----------NFLELNASDERG--IDVIRNKIKEFARTAPV---GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNT  133 (319)
T ss_pred             -----------ceEEeccccccc--hHHHHHHHHHHHhcCCC---CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCC
Confidence                       012222222111  11244555555554443   22457899999999999999999999999988889


Q ss_pred             eEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 017844          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP  241 (365)
Q Consensus       162 ~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~  241 (365)
                      .+|++++...++.+++++||.+++|++++.+++..+++.++.++|+.+++++++.+++.++||+|.+++.|+.++..+..
T Consensus       134 ~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~  213 (319)
T PRK00440        134 RFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKE  213 (319)
T ss_pred             eEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998887655


Q ss_pred             CCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 017844          242 FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWA  317 (365)
Q Consensus       242 ~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~~  317 (365)
                      ++.+.  .+.....+..++++++++..    ++..+++..+++++ ..|.++..|+..+..++.. .++.+...++.+.+
T Consensus       214 it~~~v~~~~~~~~~~~i~~l~~~~~~----~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~  289 (319)
T PRK00440        214 VTEEAVYKITGTARPEEIREMIELALN----GDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAI  289 (319)
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            55543  23344566788999999886    45677888889988 4899999999998876543 45666666666666


Q ss_pred             HHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844          318 AYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS  358 (365)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (365)
                      +.+++++                |++..+.+ +|..++++++
T Consensus       290 ~~~d~~~----------------k~g~~~~~~le~~i~~~~~  315 (319)
T PRK00440        290 GEADFRI----------------TEGANERIQLEALLAKLAL  315 (319)
T ss_pred             HHHHHHH----------------HCCCCHHHHHHHHHHHHHH
Confidence            6666553                34445555 7777777654

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=100.00  E-value=4.1e-34  Score=255.06  Aligned_cols=321  Identities=20%  Similarity=0.221  Sum_probs=227.1

Q ss_pred             CCcccccCCCCCCccccCHHHH---HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      ||.+++.||+++++++||++.+   +-|+.+++.+..++++|||||||||||+|+.|++...+.                
T Consensus        12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~----------------   75 (436)
T COG2256          12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA----------------   75 (436)
T ss_pred             cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc----------------
Confidence            5789999999999999999998   689999999999999999999999999999999965221                


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                                      +..+++...+.   ..++++++.......     .++..|+||||+|++++..|+.||..+|+.
T Consensus        76 ----------------f~~~sAv~~gv---kdlr~i~e~a~~~~~-----~gr~tiLflDEIHRfnK~QQD~lLp~vE~G  131 (436)
T COG2256          76 ----------------FEALSAVTSGV---KDLREIIEEARKNRL-----LGRRTILFLDEIHRFNKAQQDALLPHVENG  131 (436)
T ss_pred             ----------------eEEeccccccH---HHHHHHHHHHHHHHh-----cCCceEEEEehhhhcChhhhhhhhhhhcCC
Confidence                            12233322232   246677766644433     356789999999999999999999999953


Q ss_pred             cCceeEEEEecCCC--cccHHHhccceeEEecCCCHHHHHHHHHHHHHH--cCCC-----CCHHHHHHHHHHcCCCHHHH
Q 017844          158 SASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK--EGLQ-----LPSGFATRLAEKSNRSLRRA  228 (365)
Q Consensus       158 ~~~~~~Il~t~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~--~~~~-----i~~~~~~~i~~~~~g~lr~a  228 (365)
                        .+.+|.+|+...  .+.++|+|||+++.|.+++.+++.+.+++.+..  .|+.     +++++.+.++..++||.|.+
T Consensus       132 --~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a  209 (436)
T COG2256         132 --TIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA  209 (436)
T ss_pred             --eEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence              455666665544  588999999999999999999999999984443  3444     78999999999999999999


Q ss_pred             HHHHHHHHhcCCCCC---CCC--------CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHH
Q 017844          229 ILSFETCRVQQYPFK---DNQ--------AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRL  297 (365)
Q Consensus       229 i~~l~~~~~~~~~~~---~~~--------~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l  297 (365)
                      +|.|+.+......-.   .+.        ........+...+++++..++-+..+...+.=++-.+++.|.+|..|.+.+
T Consensus       210 LN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRl  289 (436)
T COG2256         210 LNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRL  289 (436)
T ss_pred             HHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHH
Confidence            999998876654211   000        011111224556777777776666667777777778889999999999888


Q ss_pred             HHHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhhhcccCC-CCCccccccccc--cccchhcccCCCcccC
Q 017844          298 LYELLKRLD---AEIKHEVCHWAAYYV----SISFQILFIVPLVDF-PSPLECSAQAAY--IQPPLIRANSDPVALH  364 (365)
Q Consensus       298 ~~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  364 (365)
                      ...-.+.+.   +....-....+.-++    .+-...|.+ +++++ .+||.|+.=-+|  ...-+=..-+-+|+.|
T Consensus       290 v~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~LAq-avvyLA~aPKSNavY~A~~~A~~d~~~~~~~~vP~H  365 (436)
T COG2256         290 VRIASEDIGLADPNALQVAVAALDAVERLGSPEARIALAQ-AVVYLALAPKSNAVYTAINAALADAKEGGSLEVPKH  365 (436)
T ss_pred             HHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHHHHH-HHHHHHhCCccHHHHHHHHHHHHHHHhcCCCCCChh
Confidence            887777442   332222222221111    222334444 34554 689999877666  2222222344455555

>PRK04195 replication factor C large subunit; Provisional

Probab=100.00  E-value=8.5e-34  Score=273.59  Aligned_cols=278  Identities=26%  Similarity=0.356  Sum_probs=210.4

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHc---CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~---~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      |+|++||||++|++++||+.+++.++.|+..   |. .++++|+||||+||||+|+++|+++...               
T Consensus         2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~---------------   66 (482)
T PRK04195          2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWE---------------   66 (482)
T ss_pred             CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---------------
Confidence            7999999999999999999999999999864   33 3449999999999999999999976211               


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----HHHHHHHH
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----EAQHSLRR  152 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----~~~~~Ll~  152 (365)
                                       .+++++++...  ...++..+.......++   ...+++||||||+|.+..    ...+.|++
T Consensus        67 -----------------~ielnasd~r~--~~~i~~~i~~~~~~~sl---~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~  124 (482)
T PRK04195         67 -----------------VIELNASDQRT--ADVIERVAGEAATSGSL---FGARRKLILLDEVDGIHGNEDRGGARAILE  124 (482)
T ss_pred             -----------------EEEEccccccc--HHHHHHHHHHhhccCcc---cCCCCeEEEEecCcccccccchhHHHHHHH
Confidence                             13333333221  22345555555444433   113678999999999976    56788999


Q ss_pred             HHhhhcCceeEEEEecCCCcccH-HHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 017844          153 TMEKYSASCRLILCCNSSSKVTE-AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS  231 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~~l~~-~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~  231 (365)
                      +++..  +..+|++||+...+.. ++++||..+.|++|+.+++..+|..++.++|+.+++++++.|++.++||+|.|++.
T Consensus       125 ~l~~~--~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~  202 (482)
T PRK04195        125 LIKKA--KQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAIND  202 (482)
T ss_pred             HHHcC--CCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            99853  5679999999888776 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCH-H
Q 017844          232 FETCRVQQYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDA-E  308 (365)
Q Consensus       232 l~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~~-~  308 (365)
                      |+.++.....++.+.  .+...+++..+|++++.++....   ...+...+++   ..++|+.++.++.+++...+.+ +
T Consensus       203 Lq~~a~~~~~it~~~v~~~~~~d~~~~if~~l~~i~~~k~---~~~a~~~~~~---~~~~~~~i~~~l~en~~~~~~~~~  276 (482)
T PRK04195        203 LQAIAEGYGKLTLEDVKTLGRRDREESIFDALDAVFKARN---ADQALEASYD---VDEDPDDLIEWIDENIPKEYDDPE  276 (482)
T ss_pred             HHHHhcCCCCCcHHHHHHhhcCCCCCCHHHHHHHHHCCCC---HHHHHHHHHc---ccCCHHHHHHHHHhccccccCCHH
Confidence            999665444444333  13335667788999999997533   3444444443   5689999999999999886543 3


Q ss_pred             HHH---HHHHHHHHhhhh
Q 017844          309 IKH---EVCHWAAYYVSI  323 (365)
Q Consensus       309 ~~~---~~~~~~~~~~~~  323 (365)
                      ...   ++...+..|.++
T Consensus       277 ~~~~a~~~ls~ad~~~~~  294 (482)
T PRK04195        277 DIARAYDALSRADIFLGR  294 (482)
T ss_pred             HHHHHHHHHhHHHHHHHH
Confidence            333   344444444444

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=100.00  E-value=1.1e-31  Score=246.79  Aligned_cols=276  Identities=24%  Similarity=0.341  Sum_probs=206.3

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      .+|++||||++|++++||+++.+.++.+++.++.+| ++++||+|+||||+++++++.+..+                  
T Consensus         9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~------------------   70 (316)
T PHA02544          9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE------------------   70 (316)
T ss_pred             CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc------------------
Confidence            379999999999999999999999999999999988 6669999999999999999865211                  


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHhhhc
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-SREAQHSLRRTMEKYS  158 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L-~~~~~~~Ll~~le~~~  158 (365)
                                    ...+++.+ +.  ...+++.+..+....+.    .++++++||||+|.+ ..++++.|..++++++
T Consensus        71 --------------~~~i~~~~-~~--~~~i~~~l~~~~~~~~~----~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~  129 (316)
T PHA02544         71 --------------VLFVNGSD-CR--IDFVRNRLTRFASTVSL----TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS  129 (316)
T ss_pred             --------------ceEeccCc-cc--HHHHHHHHHHHHHhhcc----cCCCeEEEEECcccccCHHHHHHHHHHHHhcC
Confidence                          01222222 11  12234444444443332    345689999999999 6777888888899998


Q ss_pred             CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLE-------FIAKKEGLQLPSGFATRLAEKSNRSLRRAILS  231 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~-------~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~  231 (365)
                      .++.||++|+...++.++++|||..+.|+.|+.++...++.       .++.++|+.++++++..+++.+.||+|++++.
T Consensus       130 ~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~  209 (316)
T PHA02544        130 KNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINE  209 (316)
T ss_pred             CCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence            89999999999999999999999999999999988775544       44556899999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHHH
Q 017844          232 FETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKH  311 (365)
Q Consensus       232 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~~~~~~  311 (365)
                      ++.++.. ..++... +.. .....++++++.+...    +....+. ....  .++++..++.++.+++...+......
T Consensus       210 l~~~~~~-~~i~~~~-l~~-~~~~~~~~l~~~l~~~----d~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~  279 (316)
T PHA02544        210 LQRYAST-GKIDAGI-LSE-VTNSDIDDVVEALKAK----DFKAVRA-LAPN--YANDYASFVGKLYDELYPQVTPPSII  279 (316)
T ss_pred             HHHHHcc-CCCCHHH-HHH-hhHHHHHHHHHHHHcC----CHHHHHH-HHHH--hccCHHHHHHHHHHHHHHhCCHHHHH
Confidence            9987643 2232211 111 1134556666665443    2333333 2222  26789999999999998888888888


Q ss_pred             HHHHHHHHhhhhhH
Q 017844          312 EVCHWAAYYVSISF  325 (365)
Q Consensus       312 ~~~~~~~~~~~~~~  325 (365)
                      ++.+.++.++.++.
T Consensus       280 ~~~~~l~~~~~~~~  293 (316)
T PHA02544        280 RLIEIIGENNQYHG  293 (316)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888887775533

>PRK13342 recombination factor protein RarA; Reviewed

Probab=100.00  E-value=4e-32  Score=257.29  Aligned_cols=321  Identities=21%  Similarity=0.249  Sum_probs=224.0

Q ss_pred             CcccccCCCCCCccccCHHHHHH---HHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQN---LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~---l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      ||++||||++|++++||++++..   +..++..+..++++|+||||+||||+|+.+++.+...           |     
T Consensus         1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-----------~-----   64 (413)
T PRK13342          1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-----------F-----   64 (413)
T ss_pred             ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----------E-----
Confidence            79999999999999999999766   9999999988889999999999999999999865211           1     


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                                      +.+.+...+.   ..+++.++.......     .++..|++|||+|.++...++.|+..+++. 
T Consensus        65 ----------------~~l~a~~~~~---~~ir~ii~~~~~~~~-----~g~~~vL~IDEi~~l~~~~q~~LL~~le~~-  119 (413)
T PRK13342         65 ----------------EALSAVTSGV---KDLREVIEEARQRRS-----AGRRTILFIDEIHRFNKAQQDALLPHVEDG-  119 (413)
T ss_pred             ----------------EEEecccccH---HHHHHHHHHHHHhhh-----cCCceEEEEechhhhCHHHHHHHHHHhhcC-
Confidence                            1112111111   124455544432211     235689999999999999999999999862 


Q ss_pred             CceeEEEEecCC--CcccHHHhccceeEEecCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          159 ASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE--GL-QLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       159 ~~~~~Il~t~~~--~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~--~~-~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                       .+.+|.+++..  ..+.++++|||..+.|.+++.+++..++++.+...  ++ .+++++++.+++.++||+|.+++.++
T Consensus       120 -~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le  198 (413)
T PRK13342        120 -TITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE  198 (413)
T ss_pred             -cEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence             44555554432  26889999999999999999999999999987653  54 89999999999999999999999999


Q ss_pred             HHHhcCCCCCCCCC---C-----CCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC
Q 017844          234 TCRVQQYPFKDNQA---I-----PAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL  305 (365)
Q Consensus       234 ~~~~~~~~~~~~~~---~-----~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~  305 (365)
                      .++.....++.+..   +     .........++++.++.+.....+...+..++..++..|.+|..|.+++.....+.+
T Consensus       199 ~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi  278 (413)
T PRK13342        199 LAALGVDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI  278 (413)
T ss_pred             HHHHccCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence            88665333332210   0     000011234556666555433355677888889999999999999999999887754


Q ss_pred             C---HHHHHHHHHHHHHhh----hhhHHHHhhhcccCCCCCccccccccc--cccchhcccCCCcccC
Q 017844          306 D---AEIKHEVCHWAAYYV----SISFQILFIVPLVDFPSPLECSAQAAY--IQPPLIRANSDPVALH  364 (365)
Q Consensus       306 ~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  364 (365)
                      .   +....-....+..++    .+-...|.++.+.-..+||.|++-.+|  ....+=.-...||++|
T Consensus       279 g~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~~~~~~~~~~vp~~  346 (413)
T PRK13342        279 GLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALADVREGGSLPVPLH  346 (413)
T ss_pred             cccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHhcCCCCCChh
Confidence            3   222222222222222    122445555544444799999998887  3333333356677777

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=100.00  E-value=1.7e-31  Score=264.47  Aligned_cols=322  Identities=19%  Similarity=0.213  Sum_probs=218.5

Q ss_pred             CCcccccCCCCCCccccCHHHH---HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      +||++||||++|++++||++++   ..++.++..++.+|++|+||||+||||+|+++++...+..               
T Consensus        16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f---------------   80 (725)
T PRK13341         16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF---------------   80 (725)
T ss_pred             CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcc---------------
Confidence            3899999999999999999988   4788899999999999999999999999999998652211               


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                                       +.+++...+..   .+++.+.........    .++..++||||+|.++...++.|+..+++.
T Consensus        81 -----------------~~lna~~~~i~---dir~~i~~a~~~l~~----~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g  136 (725)
T PRK13341         81 -----------------SSLNAVLAGVK---DLRAEVDRAKERLER----HGKRTILFIDEVHRFNKAQQDALLPWVENG  136 (725)
T ss_pred             -----------------eeehhhhhhhH---HHHHHHHHHHHHhhh----cCCceEEEEeChhhCCHHHHHHHHHHhcCc
Confidence                             11111111111   233444433222111    234579999999999999999999999852


Q ss_pred             cCceeEEEEecCC--CcccHHHhccceeEEecCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCCHHHH
Q 017844          158 SASCRLILCCNSS--SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-------KEGLQLPSGFATRLAEKSNRSLRRA  228 (365)
Q Consensus       158 ~~~~~~Il~t~~~--~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~-------~~~~~i~~~~~~~i~~~~~g~lr~a  228 (365)
                        .+.+|.+++..  ..+.+++.|||.++.|++++.+++..++++.+.       .+++.+++++++.|++.++||+|++
T Consensus       137 --~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l  214 (725)
T PRK13341        137 --TITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL  214 (725)
T ss_pred             --eEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence              34444444433  257899999999999999999999999999887       4678999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCC-CCCCCCCCHHH--------------HHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHH
Q 017844          229 ILSFETCRVQQYPFKD-NQAIPAMDWEE--------------FVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV  293 (365)
Q Consensus       229 i~~l~~~~~~~~~~~~-~~~~~~~~~~~--------------~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~i  293 (365)
                      ++.|+.++.....-.. ...++....++              .-.+.+.++.+.-...+.+.+...+-.+++.|.+|..|
T Consensus       215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I  294 (725)
T PRK13341        215 LNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFI  294 (725)
T ss_pred             HHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence            9999987643211000 00011111111              11234444444444456777888888999999999999


Q ss_pred             HHHHHHHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhhhcccCCCCCccccccccc-cccc-hhcccCCCcccC
Q 017844          294 LKRLLYELLKRLD---AEIKHEVCHWAAYYV----SISFQILFIVPLVDFPSPLECSAQAAY-IQPP-LIRANSDPVALH  364 (365)
Q Consensus       294 l~~l~~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~  364 (365)
                      ++.+.....+.+.   +....-....+..++    .+-...|.+..++-..+||.|++ .++ --+. +-...+.||++|
T Consensus       295 ~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKSns~-~a~~~a~~~~~~~~~~~vP~h  373 (725)
T PRK13341        295 FRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSV-LGFFDALKKVREEQVQDVPNH  373 (725)
T ss_pred             HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCccHH-HHHHHHHHHHHhcCCCCCChH
Confidence            9999998887543   222211111111111    11244555554555589999999 666 2222 333356788887

>PRK04132 replication factor C small subunit; Provisional

Probab=99.98  E-value=1.8e-30  Score=258.19  Aligned_cols=254  Identities=31%  Similarity=0.441  Sum_probs=211.3

Q ss_pred             EEEEC--CCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHH
Q 017844           37 LLFYG--PPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI  114 (365)
Q Consensus        37 lll~G--p~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  114 (365)
                      .+..|  |++.||||+|+++|+++++...+                           ..++++++++....  ..+++.+
T Consensus       567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~---------------------------~~~lElNASd~rgi--d~IR~iI  617 (846)
T PRK04132        567 NFIGGNLPTVLHNTTAALALARELFGENWR---------------------------HNFLELNASDERGI--NVIREKV  617 (846)
T ss_pred             hhhcCCCCCcccHHHHHHHHHHhhhccccc---------------------------CeEEEEeCCCcccH--HHHHHHH
Confidence            46778  99999999999999987553211                           22467777764322  2588888


Q ss_pred             HHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHH
Q 017844          115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQI  194 (365)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~  194 (365)
                      +.++...++   ...+++|+||||+|.|+.++|++|+++||+|+.+++||++||++.+++++|+|||+.++|++++.+++
T Consensus       618 k~~a~~~~~---~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i  694 (846)
T PRK04132        618 KEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI  694 (846)
T ss_pred             HHHHhcCCc---CCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHH
Confidence            888876665   22357999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhH
Q 017844          195 VKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKR  272 (365)
Q Consensus       195 ~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~  272 (365)
                      ..+|.+++.++|+.++++++..|+..++||+|.|++.||.++.....++.+.  .+........+++++..++.    .+
T Consensus       695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~----~~  770 (846)
T PRK04132        695 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALK----GN  770 (846)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhc----Cc
Confidence            9999999999999999999999999999999999999999877655555443  12233334567777776665    44


Q ss_pred             HHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhhhhhHH
Q 017844          273 LFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAYYVSISFQ  326 (365)
Q Consensus       273 ~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~  326 (365)
                      +.+++..+++++ ..|+++..++.+++..+.. .+++..+.++...++.++.++..
T Consensus       771 ~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~~~i~~~~k~~ll~~lae~e~rl~~  826 (846)
T PRK04132        771 FLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEPKKVELADKIGEYNFRLVE  826 (846)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhHHHHC
Confidence            788888899988 7899999999999999977 57889999999999999988653

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.97  E-value=8.4e-30  Score=233.32  Aligned_cols=295  Identities=17%  Similarity=0.265  Sum_probs=210.6

Q ss_pred             CCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (365)
                      +|++++||+.+++.+..+++.++.+| ++|+||+|+|||++|+.+++.+.|......                       
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~-----------------------   58 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE-----------------------   58 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-----------------------
Confidence            68999999999999999999999999 899999999999999999999987542210                       


Q ss_pred             ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~  169 (365)
                       .+++..+.+.+........+++..+.+.. .+.    .++++|+|||++|.|+.+++|+|+++||+||.++.||++|++
T Consensus        59 -h~D~~~~~~~~~~~i~v~~ir~~~~~~~~-~p~----~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~  132 (313)
T PRK05564         59 -YVDIIEFKPINKKSIGVDDIRNIIEEVNK-KPY----EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN  132 (313)
T ss_pred             -CCCeEEeccccCCCCCHHHHHHHHHHHhc-Ccc----cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence             01112222211122222346666655433 333    567899999999999999999999999999999999999999


Q ss_pred             CCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCCCC
Q 017844          170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIP  249 (365)
Q Consensus       170 ~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~~~~  249 (365)
                      +++++++|+|||+.++|.+++.+++..++.+...    .++++.++.++..++|++++|...+..-..            
T Consensus       133 ~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~~------------  196 (313)
T PRK05564        133 LEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDSL------------  196 (313)
T ss_pred             hHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccHH------------
Confidence            9999999999999999999999999999986542    467888999999999999999866532210            


Q ss_pred             CCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh------------CCHHHHHHHHHHH
Q 017844          250 AMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR------------LDAEIKHEVCHWA  317 (365)
Q Consensus       250 ~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~------------~~~~~~~~~~~~~  317 (365)
                       ...++.++++++.+..++    .....+.+..+...+.++..++.++...+.+-            ++.+....+...+
T Consensus       197 -~~~~~~~~~~~~~l~~~~----~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a  271 (313)
T PRK05564        197 -KNIRNMSLEILKDIKKSN----INILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHIS  271 (313)
T ss_pred             -HHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHH
Confidence             113456777777776532    23334445556667788888888888776651            2233345566666


Q ss_pred             HHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcc
Q 017844          318 AYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRA  356 (365)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  356 (365)
                      ..++......++. .+.+....+++...+.. ++..++++
T Consensus       272 ~~~s~~~L~~~~~-~l~~~~~~l~~n~n~~l~le~lll~~  310 (313)
T PRK05564        272 EKFSYKKLNKMIE-IINDTRDNLSSNVNPTLVFDSMLIKM  310 (313)
T ss_pred             hhCCHHHHHHHHH-HHHHHHHHHHHcCCccHHHHHHHHhh
Confidence            6666442333232 23343334444555555 77777765

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=99.97  E-value=4.2e-30  Score=222.64  Aligned_cols=213  Identities=31%  Similarity=0.452  Sum_probs=181.4

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      |+|++||||.++.++++|++++..+......++.||+|+|||||+|||+...+.++.+.++...                
T Consensus        29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~----------------   92 (360)
T KOG0990|consen   29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPT----------------   92 (360)
T ss_pred             CCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCc----------------
Confidence            6899999999999999999999999999989999999999999999999999999988764211                


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCC-CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI-DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~  159 (365)
                                .....++++++....+  .+++-+..++..... .++....++.+|+||+|.|+.++|++|.+.++.+..
T Consensus        93 ----------~~m~lelnaSd~rgid--~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~  160 (360)
T KOG0990|consen   93 ----------TSMLLELNASDDRGID--PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTA  160 (360)
T ss_pred             ----------hhHHHHhhccCccCCc--chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhcc
Confidence                      0112445555443333  455666666655432 122234789999999999999999999999999999


Q ss_pred             ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      +++|++++|.+.++.++++|||..++|.+++..+....+.++++.+....+++....+++.+.||+|.|+|.|+......
T Consensus       161 n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~  240 (360)
T KOG0990|consen  161 NTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKV  240 (360)
T ss_pred             ceEEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             CC
Q 017844          240 YP  241 (365)
Q Consensus       240 ~~  241 (365)
                      ..
T Consensus       241 ~~  242 (360)
T KOG0990|consen  241 ME  242 (360)
T ss_pred             CC
Confidence            43

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.97  E-value=1.7e-29  Score=234.96  Aligned_cols=200  Identities=23%  Similarity=0.379  Sum_probs=162.2

Q ss_pred             CCCccccCHHHHHHHHHHHHcCC---------CCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTEQD---------CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~~~---------~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .|++++||+.+++.|+.++..++         .+| ++|+||+|+|||++|+.+|+.++|....          ..||+.
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----------~~~Cg~   72 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----------EPGCGE   72 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----------CCCCCC
Confidence            58999999999999999999877         788 9999999999999999999999887532          235666


Q ss_pred             ceeccccccccccceec---CCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSANHVEL---SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..|  ..+..+.|.++   .+.. .......++++++.+... +    ..++++|+||||+|.|++.++|.|+++||++
T Consensus        73 C~~C--~~~~~~~hpD~~~i~~~~-~~i~i~~iR~l~~~~~~~-p----~~~~~kViiIDead~m~~~aanaLLk~LEep  144 (394)
T PRK07940         73 CRAC--RTVLAGTHPDVRVVAPEG-LSIGVDEVRELVTIAARR-P----STGRWRIVVIEDADRLTERAANALLKAVEEP  144 (394)
T ss_pred             CHHH--HHHhcCCCCCEEEecccc-ccCCHHHHHHHHHHHHhC-c----ccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence            6555  44444445443   2221 222233467766655432 2    2567899999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      +.++.||++|+++..++++|+|||+.++|++|+.+++.++|.+   +.+  ++++.+..++..++|+++.|+.+++
T Consensus       145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~  215 (394)
T PRK07940        145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLAT  215 (394)
T ss_pred             CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhc
Confidence            9999999999999999999999999999999999999999973   223  5688999999999999999987753

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=99.97  E-value=6.8e-31  Score=230.65  Aligned_cols=285  Identities=19%  Similarity=0.267  Sum_probs=196.6

Q ss_pred             CcccccCCCCCCccccCHHHH---HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844            2 LWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      |.+|+.||++++|.+||++++   ..|+..++++++|.++|+|||||||||+|+.|+..--                   
T Consensus       127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk-------------------  187 (554)
T KOG2028|consen  127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK-------------------  187 (554)
T ss_pred             ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC-------------------
Confidence            678999999999999999987   5788899999999999999999999999999987321                   


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                                -.+..++++.+...+..   .++++++.......+    ..++.|+||||+|++++..|+.|+..+|.. 
T Consensus       188 ----------~~SyrfvelSAt~a~t~---dvR~ife~aq~~~~l----~krkTilFiDEiHRFNksQQD~fLP~VE~G-  249 (554)
T KOG2028|consen  188 ----------KHSYRFVELSATNAKTN---DVRDIFEQAQNEKSL----TKRKTILFIDEIHRFNKSQQDTFLPHVENG-  249 (554)
T ss_pred             ----------CCceEEEEEeccccchH---HHHHHHHHHHHHHhh----hcceeEEEeHHhhhhhhhhhhcccceeccC-
Confidence                      11123455555444433   467777766555443    456789999999999999999999988853 


Q ss_pred             CceeEEEEecCCC--cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----c---------CCCCCHHHHHHHHHHcCC
Q 017844          159 ASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----E---------GLQLPSGFATRLAEKSNR  223 (365)
Q Consensus       159 ~~~~~Il~t~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~---------~~~i~~~~~~~i~~~~~g  223 (365)
                       .+.+|.+|+...  .+..++.|||.++.+.+++.+.+..+|.+-..-    +         .+.+++.++++++..+.|
T Consensus       250 -~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG  328 (554)
T KOG2028|consen  250 -DITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG  328 (554)
T ss_pred             -ceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence             566777666554  578999999999999999999999999884431    1         124778999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 017844          224 SLRRAILSFETCRVQQYP-FKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL  302 (365)
Q Consensus       224 ~lr~ai~~l~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~  302 (365)
                      |.|.|+|.|+........ -......     .-.+.++- ..++. +...++.+.+.+|+.+                  
T Consensus       329 DaR~aLN~Lems~~m~~tr~g~~~~~-----~lSidDvk-e~lq~-s~~~YDr~Ge~HYntI------------------  383 (554)
T KOG2028|consen  329 DARAALNALEMSLSMFCTRSGQSSRV-----LLSIDDVK-EGLQR-SHILYDRAGEEHYNTI------------------  383 (554)
T ss_pred             hHHHHHHHHHHHHHHHHhhcCCcccc-----eecHHHHH-HHHhh-ccceecccchhHHHHH------------------
Confidence            999999999976221111 0000100     01112222 22221 1122333334444332                  


Q ss_pred             HhCCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccccccchhcccCCCcccC
Q 017844          303 KRLDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLIRANSDPVALH  364 (365)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (365)
                                     +.+++.++-.=.+..++.+.-+++.+++|.|+-++|+|++|++++|-
T Consensus       384 ---------------SA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASEDIGla  430 (554)
T KOG2028|consen  384 ---------------SALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLA  430 (554)
T ss_pred             ---------------HHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhcccCcC
Confidence                           22222222221222333344467789999999999999999999973

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.97  E-value=3e-29  Score=230.34  Aligned_cols=217  Identities=22%  Similarity=0.367  Sum_probs=167.0

Q ss_pred             ccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844            6 KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus         6 k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      ...|+.+++++||+++.+.|...+.+|+.+| ++|+||+|+||||+++.+++.++|.........  .. ..||+.|..|
T Consensus        16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~--~~-~~~~~~c~~c   92 (351)
T PRK09112         16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE--TL-ADPDPASPVW   92 (351)
T ss_pred             CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc--cc-CCCCCCCHHH
Confidence            4689999999999999999999999999999 999999999999999999999998432111000  11 2344444333


Q ss_pred             cccccccc---cceecCCC-CcC------ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844           85 ELTTLSSA---NHVELSPS-DAG------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (365)
Q Consensus        85 ~~~~~~~~---~~~~~~~~-~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l  154 (365)
                        ..+..+   ++..+... +..      ......++++.+.+....     ..++++|+||||+|.|+..++|+|++++
T Consensus        93 --~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~-----~~g~~rVviIDeAd~l~~~aanaLLk~L  165 (351)
T PRK09112         93 --RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS-----GDGNWRIVIIDPADDMNRNAANAILKTL  165 (351)
T ss_pred             --HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc-----ccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence              333333   33333211 111      111123444444433322     3567899999999999999999999999


Q ss_pred             hhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844          155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       155 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      |+++.++.||++|+.+.+++++++|||+.++|++++.+++.++|.+.....+  ++++++..+++.++|++|.|+++++.
T Consensus       166 EEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~  243 (351)
T PRK09112        166 EEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY  243 (351)
T ss_pred             hcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999998554433  77999999999999999999999863

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=1.5e-28  Score=225.46  Aligned_cols=200  Identities=23%  Similarity=0.333  Sum_probs=159.4

Q ss_pred             CCCcccc-CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844           11 TLDQVIV-HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus        11 ~~~~iig-~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      .|+.++| |+.+++.|+..+..++.+| ++|+||+|+||+++|+.+++.++|+.+..         ..||+.|..|  ..
T Consensus         3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~---------~~~cg~C~~c--~~   71 (329)
T PRK08058          3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNG---------VEPCGTCTNC--KR   71 (329)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCC---------CCCCCcCHHH--HH
Confidence            4678888 9999999999999999999 89999999999999999999999875321         3467777666  55


Q ss_pred             cccccceecCCC--CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEE
Q 017844           89 LSSANHVELSPS--DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILC  166 (365)
Q Consensus        89 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~  166 (365)
                      +..+.|.++...  +........+++..+.+....     ..++++|+||||++.|+.+++|+|+++||+||.++.||++
T Consensus        72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~-----~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~  146 (329)
T PRK08058         72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSG-----VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILL  146 (329)
T ss_pred             HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCC-----cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEE
Confidence            555555443211  112222234666665554332     2567899999999999999999999999999999999999


Q ss_pred             ecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          167 CNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       167 t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      |+++.+++++|+|||+.++|.+++.+++.++|+.    +|  ++++....++.. .|++++|+.+++
T Consensus       147 t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~-~g~~~~A~~l~~  206 (329)
T PRK08058        147 TENKHQILPTILSRCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGL-TNSVEEALALSE  206 (329)
T ss_pred             eCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHH-cCCHHHHHHHhc
Confidence            9999999999999999999999999999888863    45  557766677766 479999998775

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=3.6e-28  Score=224.31  Aligned_cols=218  Identities=20%  Similarity=0.291  Sum_probs=163.3

Q ss_pred             cCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc-ccceecCCCcceec
Q 017844            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN-KTWKIDAGSRNIDL   84 (365)
Q Consensus         7 ~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~   84 (365)
                      .+|+++++++||+.+++.|..++.+++.+| ++|+||+|+||+++|+.+|+.++|.........+ ......+|+.|..|
T Consensus        13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c   92 (365)
T PRK07471         13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA   92 (365)
T ss_pred             CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence            689999999999999999999999999999 9999999999999999999999997632111000 00002223333333


Q ss_pred             c-ccccccccceecCCC--CcC-----ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           85 E-LTTLSSANHVELSPS--DAG-----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        85 ~-~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                      . +...++++...+.+.  +.+     ...-..++++.+.+...     +..++++|+||||+|.|+..++|+|++++|+
T Consensus        93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~-----~~~~~~kVviIDead~m~~~aanaLLK~LEe  167 (365)
T PRK07471         93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT-----AAEGGWRVVIVDTADEMNANAANALLKVLEE  167 (365)
T ss_pred             HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC-----cccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence            0 022233343334331  211     11112344444433222     2356789999999999999999999999999


Q ss_pred             hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      ++.++.||++|+++..+.++++|||+.+.|++++.+++.++|...    +...+++.+..+++.++|+++.|+.+++
T Consensus       168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~  240 (365)
T PRK07471        168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAG  240 (365)
T ss_pred             CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence            999999999999999999999999999999999999999999864    3344566668899999999999999886

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.96  E-value=1.6e-28  Score=206.10  Aligned_cols=193  Identities=23%  Similarity=0.346  Sum_probs=136.1

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHH-----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~-----~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      +++++.||++|++++||++++..++-+++     +...+|++||||||+||||+|+.||+++..+           +   
T Consensus        13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~-----------~---   78 (233)
T PF05496_consen   13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN-----------F---   78 (233)
T ss_dssp             -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------------E---
T ss_pred             hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC-----------e---
Confidence            46788999999999999999988877664     2456789999999999999999999986321           1   


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                                ..        .+...  .....   ++...+...        .+..|++|||+|++++..++.|+..||+
T Consensus        79 ----------~~--------~sg~~--i~k~~---dl~~il~~l--------~~~~ILFIDEIHRlnk~~qe~LlpamEd  127 (233)
T PF05496_consen   79 ----------KI--------TSGPA--IEKAG---DLAAILTNL--------KEGDILFIDEIHRLNKAQQEILLPAMED  127 (233)
T ss_dssp             ----------EE--------EECCC----SCH---HHHHHHHT----------TT-EEEECTCCC--HHHHHHHHHHHHC
T ss_pred             ----------Ee--------ccchh--hhhHH---HHHHHHHhc--------CCCcEEEEechhhccHHHHHHHHHHhcc
Confidence                      00        00000  01111   222222211        2347999999999999999999999997


Q ss_pred             hc------------------CceeEEEEecCCCcccHHHhcccee-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844          157 YS------------------ASCRLILCCNSSSKVTEAIRSRCLN-IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (365)
Q Consensus       157 ~~------------------~~~~~Il~t~~~~~l~~~l~sR~~~-i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i  217 (365)
                      ..                  +...+|.+|+....+..++++||.. .++..++.+++.+++++.+...++.++++++..|
T Consensus       128 ~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~I  207 (233)
T PF05496_consen  128 GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEI  207 (233)
T ss_dssp             SEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHH
T ss_pred             CeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence            42                  2345888888888899999999975 5899999999999999999899999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhcC
Q 017844          218 AEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       218 ~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      |+.|.|.+|-|.++|..+--++
T Consensus       208 a~rsrGtPRiAnrll~rvrD~a  229 (233)
T PF05496_consen  208 ARRSRGTPRIANRLLRRVRDFA  229 (233)
T ss_dssp             HHCTTTSHHHHHHHHHHHCCCC
T ss_pred             HHhcCCChHHHHHHHHHHHHHH
Confidence            9999999999999999875443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=9.2e-28  Score=217.66  Aligned_cols=202  Identities=23%  Similarity=0.317  Sum_probs=153.4

Q ss_pred             CCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (365)
                      .|++++||+.+++.|...+..++.+| +||+||+|+||+++|.++++.++|....              +.|..+.....
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c--------------~~c~~~~~~~~   67 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSP--------------SKNIRRRLEEG   67 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCC--------------CCcHhcccccC
Confidence            58899999999999999999999988 9999999999999999999999886521              11111100222


Q ss_pred             ccccceecCCC----C----------cC-------ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHH
Q 017844           90 SSANHVELSPS----D----------AG-------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQH  148 (365)
Q Consensus        90 ~~~~~~~~~~~----~----------~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~  148 (365)
                      .+++...+.+.    .          .+       ...-..++++.+.+ ...+.    .++++|+|||++|.|+..++|
T Consensus        68 ~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l-~~~p~----~~~~kVvII~~ae~m~~~aaN  142 (314)
T PRK07399         68 NHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFL-SRPPL----EAPRKVVVIEDAETMNEAAAN  142 (314)
T ss_pred             CCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHH-ccCcc----cCCceEEEEEchhhcCHHHHH
Confidence            22222222221    0          00       01112345544433 33333    568899999999999999999


Q ss_pred             HHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 017844          149 SLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA  228 (365)
Q Consensus       149 ~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~a  228 (365)
                      +|+++||+|+ ++.||++|++++++++||+|||+.++|++++.+++.++|.+....++..   .....++..++|++++|
T Consensus       143 aLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~a  218 (314)
T PRK07399        143 ALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAA  218 (314)
T ss_pred             HHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHH
Confidence            9999999999 8899999999999999999999999999999999999999875433322   23578889999999999


Q ss_pred             HHHHHHH
Q 017844          229 ILSFETC  235 (365)
Q Consensus       229 i~~l~~~  235 (365)
                      ++.++..
T Consensus       219 l~~l~~~  225 (314)
T PRK07399        219 IANIEQL  225 (314)
T ss_pred             HHHHHHH
Confidence            9988754

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=2.3e-26  Score=207.81  Aligned_cols=195  Identities=21%  Similarity=0.234  Sum_probs=157.6

Q ss_pred             CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (365)
                      +....+.+...+.+|+.+| ++|+||+|+||+++|+.+|+.++|.....         ..||+.|..|  ..+..+.|.+
T Consensus         7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~---------~~~Cg~C~sC--~~~~~g~HPD   75 (325)
T PRK06871          7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG---------DQPCGQCHSC--HLFQAGNHPD   75 (325)
T ss_pred             hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHH--HHHhcCCCCC
Confidence            6778899999999999999 99999999999999999999999976432         3567777666  5555555544


Q ss_pred             ---cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844           97 ---LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus        97 ---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l  173 (365)
                         +.+.+.....-..+|++.+.+.....     .++++|+|||++|.|+..++|+|||+||||++++.||++|++++++
T Consensus        76 ~~~i~p~~~~~I~id~iR~l~~~~~~~~~-----~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~l  150 (325)
T PRK06871         76 FHILEPIDNKDIGVDQVREINEKVSQHAQ-----QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAAL  150 (325)
T ss_pred             EEEEccccCCCCCHHHHHHHHHHHhhccc-----cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhC
Confidence               33322222333456776666554332     5678999999999999999999999999999999999999999999


Q ss_pred             cHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       174 ~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      ++||+|||+.+.|++++.+++.++|....     ..+++.+..++..++|++..|+..++
T Consensus       151 lpTI~SRC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~  205 (325)
T PRK06871        151 LPTIYSRCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLE  205 (325)
T ss_pred             chHHHhhceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence            99999999999999999999999998653     23445567778899999999987764

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=99.96  E-value=1.5e-27  Score=217.82  Aligned_cols=195  Identities=19%  Similarity=0.248  Sum_probs=159.7

Q ss_pred             CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (365)
                      +....+.+...+.+++.+| ++|+||+|+||+++|+.+|+.++|..+..         ..||+.|..|  ..+..+.|.+
T Consensus         7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~---------~~~Cg~C~sC--~~~~~g~HPD   75 (334)
T PRK07993          7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQG---------HKSCGHCRGC--QLMQAGTHPD   75 (334)
T ss_pred             ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHH--HHHHcCCCCC
Confidence            5678899999999999999 99999999999999999999999965432         3467777666  5555554444


Q ss_pred             ---cCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844           97 ---LSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus        97 ---~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                         +.+... ....-..++++.+.+.....     .++++|+|||++|.|+.+++|+|||+||||++++.||++|+++++
T Consensus        76 ~~~i~p~~~~~~I~idqiR~l~~~~~~~~~-----~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~  150 (334)
T PRK07993         76 YYTLTPEKGKSSLGVDAVREVTEKLYEHAR-----LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR  150 (334)
T ss_pred             EEEEecccccccCCHHHHHHHHHHHhhccc-----cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence               333322 12334457777666655433     578899999999999999999999999999999999999999999


Q ss_pred             ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       173 l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      +++||+|||+.+.|++++.+++..+|...     ..++++.+..+++.++|++++|+.+++
T Consensus       151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~  206 (334)
T PRK07993        151 LLATLRSRCRLHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQ  206 (334)
T ss_pred             ChHHHHhccccccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence            99999999999999999999999999742     236677788899999999999998875

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.95  E-value=1.1e-26  Score=211.58  Aligned_cols=189  Identities=22%  Similarity=0.307  Sum_probs=151.1

Q ss_pred             HHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee---cCCC
Q 017844           25 LKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE---LSPS  100 (365)
Q Consensus        25 l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  100 (365)
                      .+.++.+|+.+| ++|+||+|+|||++|+.+|+.++|..+..         ..||+.|..|  ..+..+.|.+   +.+.
T Consensus        12 ~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~---------~~~Cg~C~sC--~~~~~g~HPD~~~i~~~   80 (328)
T PRK05707         12 WQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQG---------GGACGSCKGC--QLLRAGSHPDNFVLEPE   80 (328)
T ss_pred             HHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHH--HHHhcCCCCCEEEEecc
Confidence            344566799999 99999999999999999999999976431         4577877777  5555555543   3343


Q ss_pred             CcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhc
Q 017844          101 DAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS  179 (365)
Q Consensus       101 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~s  179 (365)
                      ..+ ......++++.+.+.....     .++++|+||||+|.|+.+++|+|+++||||+.++.||++|++++.+++||+|
T Consensus        81 ~~~~~i~id~iR~l~~~~~~~~~-----~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S  155 (328)
T PRK05707         81 EADKTIKVDQVRELVSFVVQTAQ-----LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS  155 (328)
T ss_pred             CCCCCCCHHHHHHHHHHHhhccc-----cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh
Confidence            221 2333467777666554332     5678999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       180 R~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      ||+.+.|++++.+++.++|.....    ..+++....++..++|+++.|+.+++
T Consensus       156 Rc~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~  205 (328)
T PRK05707        156 RCQQQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHE  205 (328)
T ss_pred             hceeeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHC
Confidence            999999999999999999986431    24577777888999999999998764

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.94  E-value=1.6e-25  Score=212.38  Aligned_cols=267  Identities=23%  Similarity=0.344  Sum_probs=198.9

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHH--------------------------------cCCCCe--EEEECCCCCcH
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT--------------------------------EQDCPH--LLFYGPPGSGK   47 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~--------------------------------~~~~~~--lll~Gp~G~GK   47 (365)
                      +|++||+|+.|.|+.|.+.+-+.+..|++                                .++.+.  ++|+||||.||
T Consensus       260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK  339 (877)
T KOG1969|consen  260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK  339 (877)
T ss_pred             eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence            79999999999999998887777777764                                123333  89999999999


Q ss_pred             HHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCC
Q 017844           48 KTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKG  127 (365)
Q Consensus        48 Ttla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  127 (365)
                      ||+|+.+|+..           |           +.          .+++++++.....  .+++.+........+ +..
T Consensus       340 TTLAHViAkqa-----------G-----------Ys----------VvEINASDeRt~~--~v~~kI~~avq~~s~-l~a  384 (877)
T KOG1969|consen  340 TTLAHVIAKQA-----------G-----------YS----------VVEINASDERTAP--MVKEKIENAVQNHSV-LDA  384 (877)
T ss_pred             hHHHHHHHHhc-----------C-----------ce----------EEEecccccccHH--HHHHHHHHHHhhccc-ccc
Confidence            99999999953           1           11          2778888765433  466666666555544 234


Q ss_pred             CCCceEEEEeCCCCCCHHHHHHHHHHHhh------hcC---------------ceeEEEEecCCCc-ccHHHhccceeEE
Q 017844          128 KRGFKVLVLNEVDKLSREAQHSLRRTMEK------YSA---------------SCRLILCCNSSSK-VTEAIRSRCLNIR  185 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~~~~~~~Ll~~le~------~~~---------------~~~~Il~t~~~~~-l~~~l~sR~~~i~  185 (365)
                      .+++.++||||+|.-...+.+.++..++.      .+.               .-.+|++||+... -+..++--|+++.
T Consensus       385 dsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~  464 (877)
T KOG1969|consen  385 DSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIA  464 (877)
T ss_pred             CCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEE
Confidence            57889999999999888899999999872      111               1249999998763 4456677789999


Q ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--------CCCCCCHHHHH
Q 017844          186 INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--------AIPAMDWEEFV  257 (365)
Q Consensus       186 ~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~--------~~~~~~~~~~i  257 (365)
                      |.+|+...+.+.|+.+|.+||+.++..++..+++.+++|+|.+||.||.++..+.......        .....+....+
T Consensus       465 f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~sl  544 (877)
T KOG1969|consen  465 FVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSL  544 (877)
T ss_pred             ecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhhhcccccccch
Confidence            9999999999999999999999999999999999999999999999999988766421111        12233445667


Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHHHHHcC---CChHHHHHHHHHHHHH
Q 017844          258 FEIASDIMQEQSPKRLFQVRGKLYELLLNC---VPPVVVLKRLLYELLK  303 (365)
Q Consensus       258 ~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~---~~~~~il~~l~~~l~~  303 (365)
                      |.++..+++-...++...+.+.++++++..   -..+.++..++..|++
T Consensus       545 f~~w~ei~ql~k~~~~r~~~~~l~~l~~~~~l~~~servlqg~f~~~~~  593 (877)
T KOG1969|consen  545 FSWWKEIFQLRKKDRHRSIDEQLYGLLNQVELHGNSERVLQGCFSIFLR  593 (877)
T ss_pred             HHHHHHHHHHhhcccccchHHHhhhhhhhhhccCchHHHHhhhhccccc
Confidence            788887776544455556666777776432   2445577777766554

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=99.94  E-value=5.1e-26  Score=205.08  Aligned_cols=191  Identities=17%  Similarity=0.279  Sum_probs=152.6

Q ss_pred             CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (365)
                      +....+.+...+..++.+| ++|+||.|+||+++|+.+|+.++|....          ..||+.|..|  ..+..+.|.+
T Consensus         8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~----------~~~Cg~C~sC--~~~~~g~HPD   75 (319)
T PRK06090          8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ----------SEACGFCHSC--ELMQSGNHPD   75 (319)
T ss_pred             HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC----------CCCCCCCHHH--HHHHcCCCCC
Confidence            5778899999999999999 9999999999999999999999997642          3467777666  5555555544


Q ss_pred             ---cCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844           97 ---LSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus        97 ---~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                         +.+... .......++++.+.+....     ..++++|+|||++|.|+..++|+|+|+||||+.++.||++|+++++
T Consensus        76 ~~~i~p~~~~~~I~vdqiR~l~~~~~~~~-----~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~  150 (319)
T PRK06090         76 LHVIKPEKEGKSITVEQIRQCNRLAQESS-----QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKR  150 (319)
T ss_pred             EEEEecCcCCCcCCHHHHHHHHHHHhhCc-----ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence               344321 2223334666554443322     2567899999999999999999999999999999999999999999


Q ss_pred             ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       173 l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      ++|||+|||+.+.|++|+.+++.++|..    .|+.    ....+++.++|++..|+..++
T Consensus       151 lLpTI~SRCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~  203 (319)
T PRK06090        151 LLPTIVSRCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK  203 (319)
T ss_pred             ChHHHHhcceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence            9999999999999999999999999974    3443    235678899999999988764

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.94  E-value=5.7e-26  Score=205.04  Aligned_cols=194  Identities=21%  Similarity=0.291  Sum_probs=147.5

Q ss_pred             CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (365)
                      ++.+++.+...+.+++.+| ++|+||+|+||+++|..+|+.++|......          +++.++.. ....+++++..
T Consensus         9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~----------~~c~~c~~-~~~g~HPD~~~   77 (319)
T PRK08769          9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPA----------AAQRTRQL-IAAGTHPDLQL   77 (319)
T ss_pred             HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCC----------CcchHHHH-HhcCCCCCEEE
Confidence            6788999999999999999 999999999999999999999999653211          01111110 01222333333


Q ss_pred             c--CCCCcCc-----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844           97 L--SPSDAGF-----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (365)
Q Consensus        97 ~--~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~  169 (365)
                      +  .+++.+.     .....++++.+.+....     ..++++|+|||++|.|+..++|+|+|+||||+.++.||++|++
T Consensus        78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p-----~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~  152 (319)
T PRK08769         78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTP-----QYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQ  152 (319)
T ss_pred             EecCCCcccccccccccHHHHHHHHHHHhhCc-----ccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence            3  3332221     11234555555443332     2467899999999999999999999999999999999999999


Q ss_pred             CCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          170 SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       170 ~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      ++++++||+|||+.+.|.+|+.+++..+|..    .|  +++..+..++..++|++..|+..++
T Consensus       153 ~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~  210 (319)
T PRK08769        153 PARLPATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR  210 (319)
T ss_pred             hhhCchHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence            9999999999999999999999999999974    23  4566677789999999999988764

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.94  E-value=2.6e-25  Score=188.89  Aligned_cols=183  Identities=24%  Similarity=0.366  Sum_probs=142.1

Q ss_pred             HHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee---cC
Q 017844           23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE---LS   98 (365)
Q Consensus        23 ~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   98 (365)
                      +.|++.+..++.+| ++|+||+|+|||++++.+++.+.|.....         ..||+.|..|  ..+....+.+   +.
T Consensus         2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~---------~~~c~~~~~c--~~~~~~~~~d~~~~~   70 (188)
T TIGR00678         2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGG---------GEPCGECPSC--RLIEAGNHPDLHRLE   70 (188)
T ss_pred             hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHH--HHHHcCCCCcEEEec
Confidence            46788888999988 99999999999999999999998863221         3445554444  3333333322   22


Q ss_pred             CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHh
Q 017844           99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR  178 (365)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~  178 (365)
                      .. ........++++++.+.. .+    ..++++|+||||+|.++..+++.|++.||+++.++.||+++++..++.++++
T Consensus        71 ~~-~~~~~~~~i~~i~~~~~~-~~----~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~  144 (188)
T TIGR00678        71 PE-GQSIKVDQVRELVEFLSR-TP----QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR  144 (188)
T ss_pred             cc-cCcCCHHHHHHHHHHHcc-Cc----ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence            21 111222345555555433 22    2467899999999999999999999999999999999999998889999999


Q ss_pred             ccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 017844          179 SRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA  228 (365)
Q Consensus       179 sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~a  228 (365)
                      |||..+.|.+++.+++.++|.+.    |  +++++++.+++.++||+|+|
T Consensus       145 sr~~~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~  188 (188)
T TIGR00678       145 SRCQVLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA  188 (188)
T ss_pred             hhcEEeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence            99999999999999999999875    4  77999999999999999975

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.93  E-value=6.3e-25  Score=199.88  Aligned_cols=191  Identities=19%  Similarity=0.256  Sum_probs=144.3

Q ss_pred             CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (365)
                      +...++.+...  .++.+| ++|+||+|+||+++|+.+|+.++|..+...        ..||+.|..|  ..+..+.|.+
T Consensus         6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~--------~~~Cg~C~~C--~~~~~~~HPD   73 (342)
T PRK06964          6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPD--------GEPCGTCAAC--NWFAQGNHPD   73 (342)
T ss_pred             cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCCCHHH--HHHHcCCCCC
Confidence            45667777765  679999 999999999999999999999999764210        3467776666  4444444433


Q ss_pred             ---cCCCC-------------------cC--------ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH
Q 017844           97 ---LSPSD-------------------AG--------FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA  146 (365)
Q Consensus        97 ---~~~~~-------------------~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~  146 (365)
                         +.+..                   .+        ...-..++++.+.+.. .+    ..++++|+|||++|.|+.++
T Consensus        74 ~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~-~~----~~~~~kV~iI~~ae~m~~~A  148 (342)
T PRK06964         74 YRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGV-GT----HRGGARVVVLYPAEALNVAA  148 (342)
T ss_pred             EEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhcc-CC----ccCCceEEEEechhhcCHHH
Confidence               32221                   00        1122345555544432 22    35778999999999999999


Q ss_pred             HHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 017844          147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR  226 (365)
Q Consensus       147 ~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr  226 (365)
                      .|+|||+||||+.++.||++|++++++++||+|||+.+.|++|+.+++.++|...    ++  ++.  +.++..++|++.
T Consensus       149 aNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~~--~~~l~~~~Gsp~  220 (342)
T PRK06964        149 ANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--ADA--DALLAEAGGAPL  220 (342)
T ss_pred             HHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--ChH--HHHHHHcCCCHH
Confidence            9999999999999999999999999999999999999999999999999999753    33  332  335678899999


Q ss_pred             HHHHHHH
Q 017844          227 RAILSFE  233 (365)
Q Consensus       227 ~ai~~l~  233 (365)
                      .|+.+++
T Consensus       221 ~Al~~~~  227 (342)
T PRK06964        221 AALALAS  227 (342)
T ss_pred             HHHHHHC
Confidence            9987763

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.93  E-value=1.3e-25  Score=185.00  Aligned_cols=159  Identities=31%  Similarity=0.498  Sum_probs=111.6

Q ss_pred             cCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecc-ccccccccc
Q 017844           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE-LTTLSSANH   94 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   94 (365)
                      ||+.+++.|...++.++.+| ++|+||+|+||+++|+.+++.++|.....          .||+.|..+. .....++++
T Consensus         1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~----------~~c~~c~~c~~~~~~~~~d~   70 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNE----------DPCGECRSCRRIEEGNHPDF   70 (162)
T ss_dssp             S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CT----------T--SSSHHHHHHHTT-CTTE
T ss_pred             CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCC----------CCCCCCHHHHHHHhccCcce
Confidence            89999999999999999999 99999999999999999999999877542          1344443330 022233444


Q ss_pred             eecCCCCcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844           95 VELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus        95 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l  173 (365)
                      ..+.+.... ......++++...+.. .+    ..++++|+||||+|.|+.+++|+||++||+|+.++.||++|+++.++
T Consensus        71 ~~~~~~~~~~~i~i~~ir~i~~~~~~-~~----~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i  145 (162)
T PF13177_consen   71 IIIKPDKKKKSIKIDQIREIIEFLSL-SP----SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI  145 (162)
T ss_dssp             EEEETTTSSSSBSHHHHHHHHHHCTS-S-----TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred             EEEecccccchhhHHHHHHHHHHHHH-HH----hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence            444444331 2233345555444322 22    24678999999999999999999999999999999999999999999


Q ss_pred             cHHHhccceeEEecCCC
Q 017844          174 TEAIRSRCLNIRINSPT  190 (365)
Q Consensus       174 ~~~l~sR~~~i~~~~~~  190 (365)
                      +++|+|||+.++|++++
T Consensus       146 l~TI~SRc~~i~~~~ls  162 (162)
T PF13177_consen  146 LPTIRSRCQVIRFRPLS  162 (162)
T ss_dssp             -HHHHTTSEEEEE----
T ss_pred             hHHHHhhceEEecCCCC
Confidence            99999999999998864

...

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.92  E-value=1.6e-24  Score=200.24  Aligned_cols=204  Identities=28%  Similarity=0.445  Sum_probs=154.9

Q ss_pred             CccccCHHHHHHHHHHHH-cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc
Q 017844           13 DQVIVHQDIAQNLKKLVT-EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~-~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   90 (365)
                      +++++++.+...+..++. .++.+| ++|+||||+||||+|.++|+.++|.........+..      ..|..+  ....
T Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~------~~~~~~--~~~~   72 (325)
T COG0470           1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC------RSCKLI--PAGN   72 (325)
T ss_pred             CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch------hhhhHH--hhcC
Confidence            367888888888888877 688999 999999999999999999999998775432221100      011111  2334


Q ss_pred             cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCC
Q 017844           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS  170 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~  170 (365)
                      ..+++++.+++....+  ...+.++.+...... .+..++++|+||||+|.|+.++++++++++|+++.+++||++||.+
T Consensus        73 ~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~-~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~  149 (325)
T COG0470          73 HPDFLELNPSDLRKID--IIVEQVRELAEFLSE-SPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP  149 (325)
T ss_pred             CCceEEecccccCCCc--chHHHHHHHHHHhcc-CCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence            4556778888766543  233444554444332 1124678999999999999999999999999999999999999999


Q ss_pred             CcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844          171 SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       171 ~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~  238 (365)
                      .++.++|+|||+.++|++++......++      +     ++++..++..+.||+|.+++.++.++..
T Consensus       150 ~~il~tI~SRc~~i~f~~~~~~~~i~~~------e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~  206 (325)
T COG0470         150 SKILPTIRSRCQRIRFKPPSRLEAIAWL------E-----DQGLEEIAAVAEGDARKAINPLQALAAL  206 (325)
T ss_pred             hhccchhhhcceeeecCCchHHHHHHHh------h-----ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence            9999999999999999984443333322      2     6788999999999999999999988776

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.92  E-value=1e-23  Score=194.46  Aligned_cols=192  Identities=23%  Similarity=0.303  Sum_probs=149.2

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc----C-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      +|-.+|||++|++++|+++.++.+..++..    + ..+|++|+||||+|||++|+.+|+++.....   ...+      
T Consensus        14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~~------   84 (328)
T PRK00080         14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITSG------   84 (328)
T ss_pred             hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEec------
Confidence            477899999999999999999988877752    3 3346999999999999999999997632110   0000      


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                                             ...  .....+..++..           .....|++|||+|.++...++.|+..+++
T Consensus        85 -----------------------~~~--~~~~~l~~~l~~-----------l~~~~vl~IDEi~~l~~~~~e~l~~~~e~  128 (328)
T PRK00080         85 -----------------------PAL--EKPGDLAAILTN-----------LEEGDVLFIDEIHRLSPVVEEILYPAMED  128 (328)
T ss_pred             -----------------------ccc--cChHHHHHHHHh-----------cccCCEEEEecHhhcchHHHHHHHHHHHh
Confidence                                   000  000112222221           12347999999999998888888888876


Q ss_pred             hc------------------CceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844          157 YS------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (365)
Q Consensus       157 ~~------------------~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i  217 (365)
                      ..                  ....+|++|+....+.++++||| ..+.|++++.+++.+++++.+...++.++++++..|
T Consensus       129 ~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~i  208 (328)
T PRK00080        129 FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEI  208 (328)
T ss_pred             cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence            42                  23567888888888999999998 579999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhc
Q 017844          218 AEKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       218 ~~~~~g~lr~ai~~l~~~~~~  238 (365)
                      ++.++|++|.+.+.++.+...
T Consensus       209 a~~~~G~pR~a~~~l~~~~~~  229 (328)
T PRK00080        209 ARRSRGTPRIANRLLRRVRDF  229 (328)
T ss_pred             HHHcCCCchHHHHHHHHHHHH
Confidence            999999999999999976543

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=99.92  E-value=1.1e-23  Score=187.11  Aligned_cols=190  Identities=18%  Similarity=0.274  Sum_probs=148.7

Q ss_pred             cCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccce
Q 017844           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (365)
                      .|+.+++.++.++.+++.+| ++|+||  +||+++|+.+|+.++|.....         ..||+.|..|  ..+..+.|.
T Consensus         6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~---------~~~Cg~C~~C--~~i~~~~HP   72 (290)
T PRK07276          6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEG---------VLPCGHCRSC--RLIEQGEFS   72 (290)
T ss_pred             HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHH--HHHhcCCCC
Confidence            47889999999999999999 999996  689999999999999976432         3567777666  555555555


Q ss_pred             e---cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844           96 E---LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus        96 ~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      +   +.+. ........++++.+.+... +    ..++++|+|||++|.|+..+.|+|||+||||+.++.||++|+++++
T Consensus        73 D~~~i~p~-~~~I~idqIR~l~~~~~~~-p----~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~  146 (290)
T PRK07276         73 DVTVIEPQ-GQVIKTDTIRELVKNFSQS-G----YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENK  146 (290)
T ss_pred             CeeeecCC-CCcCCHHHHHHHHHHHhhC-c----ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence            4   3332 2223344677777766543 3    2567899999999999999999999999999999999999999999


Q ss_pred             ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       173 l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      ++|||+|||+.++|++ +.+++.+++.    ++|+  +++....++..+ |++++|+.+++
T Consensus       147 lLpTI~SRcq~i~f~~-~~~~~~~~L~----~~g~--~~~~a~~la~~~-~s~~~A~~l~~  199 (290)
T PRK07276        147 VLPTIKSRTQIFHFPK-NEAYLIQLLE----QKGL--LKTQAELLAKLA-QSTSEAEKLAQ  199 (290)
T ss_pred             CchHHHHcceeeeCCC-cHHHHHHHHH----HcCC--ChHHHHHHHHHC-CCHHHHHHHhC
Confidence            9999999999999976 7777777775    4554  355555556554 68999998873

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.92  E-value=2e-23  Score=178.57  Aligned_cols=189  Identities=23%  Similarity=0.333  Sum_probs=150.2

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHHc-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      ...||++|++++||+++++.++-.++.     ....|+||+||||.||||+|..+|+++...           +      
T Consensus        18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn-----------~------   80 (332)
T COG2255          18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN-----------L------   80 (332)
T ss_pred             cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC-----------e------
Confidence            467999999999999999999888753     345689999999999999999999987321           1      


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-  158 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-  158 (365)
                             .. +++..+         ..   ..++..-+..        -...+|+||||+|++++.+.+.|...||++. 
T Consensus        81 -------k~-tsGp~l---------eK---~gDlaaiLt~--------Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~l  132 (332)
T COG2255          81 -------KI-TSGPAL---------EK---PGDLAAILTN--------LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRL  132 (332)
T ss_pred             -------Ee-cccccc---------cC---hhhHHHHHhc--------CCcCCeEEEehhhhcChhHHHHhhhhhhheeE
Confidence                   00 000000         00   1122222222        2345899999999999999999999999753 


Q ss_pred             -----------------CceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017844          159 -----------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK  220 (365)
Q Consensus       159 -----------------~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~  220 (365)
                                       +...+|.+|+..-.+..++++||- ..++..++.+++.+++.+-+...++.++++++..||+.
T Consensus       133 DI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r  212 (332)
T COG2255         133 DIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARR  212 (332)
T ss_pred             EEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh
Confidence                             234588889998899999999995 78888999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhc
Q 017844          221 SNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       221 ~~g~lr~ai~~l~~~~~~  238 (365)
                      |.|-+|-|.++|.++--.
T Consensus       213 SRGTPRIAnRLLrRVRDf  230 (332)
T COG2255         213 SRGTPRIANRLLRRVRDF  230 (332)
T ss_pred             ccCCcHHHHHHHHHHHHH
Confidence            999999999999876443

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.91  E-value=1.5e-23  Score=203.43  Aligned_cols=222  Identities=23%  Similarity=0.321  Sum_probs=151.1

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC-------CCccceeccccce
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-------GAEKVKVENKTWK   74 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-------~~~~i~~~~~~~~   74 (365)
                      +|.+||||++|++++|++...+.++..+......|++|+||+|||||++|+++.......       ....+.++|....
T Consensus        54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~  133 (531)
T TIGR02902        54 PLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTAR  133 (531)
T ss_pred             hHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccccc
Confidence            699999999999999999999999988877777779999999999999999998743211       1111222221100


Q ss_pred             ecCCCcceeccccccccccce-ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 017844           75 IDAGSRNIDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRT  153 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~  153 (365)
                      .+.  +...-  ..+.+.... .......+...           ......+.-...+..+++|||++.|++..|+.|++.
T Consensus       134 ~~~--~~~~~--~li~~~~~p~~~~~~~~g~~g-----------~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~  198 (531)
T TIGR02902       134 FDE--RGIAD--PLIGSVHDPIYQGAGPLGIAG-----------IPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKV  198 (531)
T ss_pred             CCc--cccch--hhcCCcccchhccccccccCC-----------cccccCchhhccCCcEEEEechhhCCHHHHHHHHHH
Confidence            000  00000  000000000 00000000000           000000000123447999999999999999999999


Q ss_pred             Hhhh----------------------------cCceeEEEEec-CCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHH
Q 017844          154 MEKY----------------------------SASCRLILCCN-SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK  204 (365)
Q Consensus       154 le~~----------------------------~~~~~~Il~t~-~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~  204 (365)
                      |++.                            +.++++|++|+ +++.++++++|||..+.|++++.+++.+++++.+++
T Consensus       199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k  278 (531)
T TIGR02902       199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK  278 (531)
T ss_pred             HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH
Confidence            9762                            12346666655 567899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          205 EGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       205 ~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      .++.+++++++.|+..+. |.|++.++++.++..+
T Consensus       279 ~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A  312 (531)
T TIGR02902       279 IGINLEKHALELIVKYAS-NGREAVNIVQLAAGIA  312 (531)
T ss_pred             cCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            999999999999988765 9999999999876543

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=99.90  E-value=1.4e-22  Score=179.23  Aligned_cols=172  Identities=16%  Similarity=0.219  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceec
Q 017844           19 QDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL   97 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (365)
                      ...++.|...++.++.+| ++|+||+|+||+++|..+|+.++|.....   .|..+             ....+++...+
T Consensus         3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~-------------~~~~HPD~~~i   66 (290)
T PRK05917          3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPE---AAYKI-------------SQKIHPDIHEF   66 (290)
T ss_pred             cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHH-------------hcCCCCCEEEE
Confidence            356788999999999999 99999999999999999999999864221   12111             22223333333


Q ss_pred             CCCCcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHH
Q 017844           98 SPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA  176 (365)
Q Consensus        98 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~  176 (365)
                      .+...+ ...-..++++.+.+... +    ..++++|+|||++|.|+.+++|+|+|+|||||.++.||++|++++.+++|
T Consensus        67 ~p~~~~~~I~idqiR~l~~~~~~~-p----~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T  141 (290)
T PRK05917         67 SPQGKGRLHSIETPRAIKKQIWIH-P----YESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT  141 (290)
T ss_pred             ecCCCCCcCcHHHHHHHHHHHhhC-c----cCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence            333221 12233566666665443 2    35788999999999999999999999999999999999999999999999


Q ss_pred             HhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 017844          177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR  226 (365)
Q Consensus       177 l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr  226 (365)
                      |+|||+.+.|+++.               ...++++.+..++..++|+++
T Consensus       142 I~SRcq~~~~~~~~---------------~~~i~~~~~~~l~~~~~g~~~  176 (290)
T PRK05917        142 IRSRSLSIHIPMEE---------------KTLVSKEDIAYLIGYAQGKES  176 (290)
T ss_pred             HHhcceEEEccchh---------------ccCCCHHHHHHHHHHhCCChh
Confidence            99999999998861               124678899999999999885

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=99.90  E-value=9.9e-22  Score=179.00  Aligned_cols=166  Identities=19%  Similarity=0.335  Sum_probs=128.4

Q ss_pred             CHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccc---
Q 017844           18 HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN---   93 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---   93 (365)
                      +...++.+...  .++.+| ++|+||+|+|||++|+.+|+.++|..+..-        ..||+.|..|  ..+..+.   
T Consensus         6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~--------~~~Cg~C~~C--~~~~~~~HpD   73 (325)
T PRK08699          6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPG--------HKPCGECMSC--HLFGQGSHPD   73 (325)
T ss_pred             cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCcCHHH--HHHhcCCCCC
Confidence            55667776655  579999 999999999999999999999998654210        3467777666  4444444   


Q ss_pred             ceecCCCC----cC----ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEE
Q 017844           94 HVELSPSD----AG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLIL  165 (365)
Q Consensus        94 ~~~~~~~~----~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il  165 (365)
                      +..+.+..    .+    ...-..+|++.+.+.. .+.    .++++|+++|+++.|+..+++.|+++||+++.++.||+
T Consensus        74 ~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~-~p~----~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Il  148 (325)
T PRK08699         74 FYEITPLSDEPENGRKLLQIKIDAVREIIDNVYL-TSV----RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLL  148 (325)
T ss_pred             EEEEecccccccccccCCCcCHHHHHHHHHHHhh-Ccc----cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEE
Confidence            44454432    11    1123356776655443 332    56789999999999999999999999999988889999


Q ss_pred             EecCCCcccHHHhccceeEEecCCCHHHHHHHHHH
Q 017844          166 CCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEF  200 (365)
Q Consensus       166 ~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~  200 (365)
                      +|+++..++++++|||+.+.|++++.+++..+|..
T Consensus       149 vth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~  183 (325)
T PRK08699        149 VSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE  183 (325)
T ss_pred             EeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999974

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=99.90  E-value=4.3e-22  Score=172.24  Aligned_cols=176  Identities=16%  Similarity=0.200  Sum_probs=133.5

Q ss_pred             CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceec---CCCCcCccchh
Q 017844           33 DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL---SPSDAGFQDRY  108 (365)
Q Consensus        33 ~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  108 (365)
                      ..+| ++|+||.|+||..+|..+|+.+.|...           ..||+.|..|  ..+..+.|.++   .+.. ......
T Consensus         5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~-----------~~~Cg~C~sC--~~i~~~~HPDl~~i~p~~-~~I~id   70 (261)
T PRK05818          5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA-----------NGFCKTCESC--LKILNGKYNDFYLIFDQK-NPIKKE   70 (261)
T ss_pred             CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC-----------CCCCCCCHHH--HHHhcCCCCCEEEecCCc-ccCCHH
Confidence            3467 999999999999999999999998753           2366776666  55555555443   2322 223334


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecC
Q 017844          109 VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS  188 (365)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~  188 (365)
                      .++++.+.+.... .   ..++++|+|||+++.|+.++.|+||++|||||.++.||++|++++.+++||+|||+.+.|++
T Consensus        71 ~ir~l~~~l~~~s-~---e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~  146 (261)
T PRK05818         71 DALSIINKLNRPS-V---ESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLS  146 (261)
T ss_pred             HHHHHHHHHccCc-h---hcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCC
Confidence            5666666554322 1   13568999999999999999999999999999999999999999999999999999999988


Q ss_pred             C----------CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 017844          189 P----------TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (365)
Q Consensus       189 ~----------~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~  235 (365)
                      +          +..++.+.+...   .+  +++    .++..++|++.+|+.+++.+
T Consensus       147 ~~~~~~~~~~~~~~~i~~~L~~~---~~--~d~----~i~~~a~g~~~~a~~l~~~l  194 (261)
T PRK05818        147 KEKKVPFKVESNDRYFQYILLSF---YS--VDE----QLQAYNNGSFSKLKNIIETL  194 (261)
T ss_pred             hhhhcccccccChHHHHHHHHHc---cC--ccH----HHHHHcCCCHHHHHHHHHHH
Confidence            8          555555555432   12  334    77778999999999999954

>TIGR00602 rad24 checkpoint protein rad24

Probab=99.89  E-value=3e-22  Score=195.07  Aligned_cols=222  Identities=20%  Similarity=0.258  Sum_probs=140.6

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCC----e-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCP----H-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~----~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      +|++||||+++++++||++.++.++.++.....+    . ++|+||+|+||||+++++++.+....        .+| .+
T Consensus        73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~--------~Ew-~n  143 (637)
T TIGR00602        73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQV--------QEW-SN  143 (637)
T ss_pred             chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH--------HHH-hh
Confidence            6999999999999999999999999999764332    2 99999999999999999999763211        011 00


Q ss_pred             CCCcceeccccccccccc-eecCCCCcC--ccchhHHHHHHHHHHhcC-CCCCCCCCCceEEEEeCCCCCCHH---HHHH
Q 017844           77 AGSRNIDLELTTLSSANH-VELSPSDAG--FQDRYVVQEVIKEMAKNR-PIDTKGKRGFKVLVLNEVDKLSRE---AQHS  149 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~vliiDE~~~L~~~---~~~~  149 (365)
                      |..    +  ........ .........  ......+.+++....... ..+....++.+||+|||++.+...   ++..
T Consensus       144 pv~----~--~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~  217 (637)
T TIGR00602       144 PTL----P--DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHE  217 (637)
T ss_pred             hhh----h--cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHH
Confidence            100    0  00000000 000000000  011112334443332111 110011346789999999766432   3333


Q ss_pred             HHH-HHhhhcCceeEEEEecCCCc---------------ccHHHhc--cceeEEecCCCHHHHHHHHHHHHHHcCCC---
Q 017844          150 LRR-TMEKYSASCRLILCCNSSSK---------------VTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQ---  208 (365)
Q Consensus       150 Ll~-~le~~~~~~~~Il~t~~~~~---------------l~~~l~s--R~~~i~~~~~~~~~~~~iL~~~~~~~~~~---  208 (365)
                      ++. ...+ ...+.+|+++++...               +.+++++  |+..|.|+|++..++.+.|.+++.+++..   
T Consensus       218 lLr~~~~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~  296 (637)
T TIGR00602       218 ILRWKYVS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGE  296 (637)
T ss_pred             HHHHHhhc-CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence            433 2212 234567777774221               2268887  56789999999999999999999986532   


Q ss_pred             ---C-CHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          209 ---L-PSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       209 ---i-~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                         + +++++..|+..++||+|.||+.||.++..+
T Consensus       297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~  331 (637)
T TIGR00602       297 KIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKS  331 (637)
T ss_pred             ccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence               2 468999999999999999999999987654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.89  E-value=6.9e-22  Score=180.92  Aligned_cols=184  Identities=22%  Similarity=0.296  Sum_probs=142.3

Q ss_pred             CCCCccccCHHHHHHHHHHHH-----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~-----~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      ++|++++|++++++.+..++.     .+..+|++|+||||+|||++++.+++++..+.    ..                
T Consensus         1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~----~~----------------   60 (305)
T TIGR00635         1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL----KI----------------   60 (305)
T ss_pred             CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----EE----------------
Confidence            579999999999999998886     24456699999999999999999999763210    00                


Q ss_pred             cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc------
Q 017844           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~------  158 (365)
                                  ......  ..   ..++...+..        .+...+++|||++.+++..++.|+..+++..      
T Consensus        61 ------------~~~~~~--~~---~~~l~~~l~~--------~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~  115 (305)
T TIGR00635        61 ------------TSGPAL--EK---PGDLAAILTN--------LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIG  115 (305)
T ss_pred             ------------eccchh--cC---chhHHHHHHh--------cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeec
Confidence                        000000  00   0111122211        1234799999999999999988988887533      


Q ss_pred             ------------CceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q 017844          159 ------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL  225 (365)
Q Consensus       159 ------------~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~l  225 (365)
                                  ....+|.+++....+.++++|||. .+.|.+++.+++.+++++.+...++.+++++++.|++.++|++
T Consensus       116 ~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p  195 (305)
T TIGR00635       116 KGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP  195 (305)
T ss_pred             cCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence                        235678888888889999999994 6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 017844          226 RRAILSFETCRVQ  238 (365)
Q Consensus       226 r~ai~~l~~~~~~  238 (365)
                      |.++++++.+...
T Consensus       196 R~~~~ll~~~~~~  208 (305)
T TIGR00635       196 RIANRLLRRVRDF  208 (305)
T ss_pred             chHHHHHHHHHHH
Confidence            9999999876544

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.89  E-value=3.6e-21  Score=182.48  Aligned_cols=277  Identities=13%  Similarity=0.181  Sum_probs=182.7

Q ss_pred             CCCccc-c--CHHHHHHHHHHHHc-----CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844           11 TLDQVI-V--HQDIAQNLKKLVTE-----QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus        11 ~~~~ii-g--~~~~~~~l~~~l~~-----~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      +|+.++ |  +..+...++.+.+.     +. ..+++|+||+|+|||||++++++++.......+++....+        
T Consensus       109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f--------  180 (445)
T PRK12422        109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF--------  180 (445)
T ss_pred             cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH--------
Confidence            788887 4  34444566666542     22 2349999999999999999999987543322222222111        


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhh-c
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKY-S  158 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~-~  158 (365)
                                   ...........   .... ++..          ....++++|||++.+..  ..++.|+.+++.. .
T Consensus       181 -------------~~~~~~~l~~~---~~~~-f~~~----------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~  233 (445)
T PRK12422        181 -------------TEHLVSAIRSG---EMQR-FRQF----------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT  233 (445)
T ss_pred             -------------HHHHHHHHhcc---hHHH-HHHH----------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH
Confidence                         00000000000   0001 1110          12457999999998853  4677788887654 2


Q ss_pred             CceeEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q 017844          159 ASCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS  231 (365)
Q Consensus       159 ~~~~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~  231 (365)
                      .+..+|++++...    .+.+.++||+   ..+.+.+|+.+++..+|++.+...|+.++++++++|+....||+|++++.
T Consensus       234 ~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~  313 (445)
T PRK12422        234 EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHA  313 (445)
T ss_pred             CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence            3457888887653    4678999999   59999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---hcCCCCCCCCCCCCCCHHHHHHHHHHHHHh-ccChhHHHHHHHHHHHHH-----HcCCChHH-HHHHHHHHH
Q 017844          232 FETCR---VQQYPFKDNQAIPAMDWEEFVFEIASDIMQ-EQSPKRLFQVRGKLYELL-----LNCVPPVV-VLKRLLYEL  301 (365)
Q Consensus       232 l~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~~~~~~~l~~l~-----~~~~~~~~-il~~l~~~l  301 (365)
                      |+.++   ++... . ...+.....+..+.+++..--. ..+++.+.++...+|.+-     ...-.... ..+++++||
T Consensus       314 l~~l~~~~a~~~~-~-~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~Va~~~~v~~~dl~s~~R~~~i~~~Rqiamyl  391 (445)
T PRK12422        314 LTLLAKRVAYKKL-S-HQLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYL  391 (445)
T ss_pred             HHHHHHHHHHHHh-h-CCCCCHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHhCCCHHHHhcCCCCcccccHHHHHHHH
Confidence            99885   33221 1 1223333333333333221101 246677888888877532     22122222 377999999


Q ss_pred             HHhCCHHHHHHHHHHHHHhhhhhH
Q 017844          302 LKRLDAEIKHEVCHWAAYYVSISF  325 (365)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~  325 (365)
                      .+.+++.+.+++++.++ .||...
T Consensus       392 ~r~~t~~s~~~IG~~fg-rdHsTV  414 (445)
T PRK12422        392 CRQKLSLSYVKIGDVFS-RDHSTV  414 (445)
T ss_pred             HHHhcCCCHHHHHHHhC-CChHHH
Confidence            99999999999999998 888743

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.88  E-value=5.8e-21  Score=181.70  Aligned_cols=284  Identities=11%  Similarity=0.117  Sum_probs=184.1

Q ss_pred             CCCCCccc-c--CHHHHHHHHHHHHc-CC-CCeEEEECCCCCcHHHHHHHHHHHhcCC--CCccceeccccceecCCCcc
Q 017844            9 PKTLDQVI-V--HQDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         9 P~~~~~ii-g--~~~~~~~l~~~l~~-~~-~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~i~~~~~~~~~~~~~~~   81 (365)
                      +-+|+.++ |  +..+...++.+... +. .++++|+|++|+|||+|++++++++...  ....+++....+        
T Consensus       111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f--------  182 (450)
T PRK14087        111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF--------  182 (450)
T ss_pred             ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--------
Confidence            45788887 3  33355566666543 22 2349999999999999999999977532  221122222111        


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhcC
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA  159 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~  159 (365)
                                   ........+. .    .+.+..+...       ....++++|||++.+.  ...++.|+.+++....
T Consensus       183 -------------~~~~~~~l~~-~----~~~~~~~~~~-------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~  237 (450)
T PRK14087        183 -------------ARKAVDILQK-T----HKEIEQFKNE-------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE  237 (450)
T ss_pred             -------------HHHHHHHHHH-h----hhHHHHHHHH-------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHH
Confidence                         0000000000 0    0011111110       1245799999999886  5678888888876543


Q ss_pred             -ceeEEEEecCCC----cccHHHhccce---eEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Q 017844          160 -SCRLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGL--QLPSGFATRLAEKSNRSLRRAI  229 (365)
Q Consensus       160 -~~~~Il~t~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~iL~~~~~~~~~--~i~~~~~~~i~~~~~g~lr~ai  229 (365)
                       +..+|++++.+.    .+.+.++||+.   ++.+.+|+.+++.++|++.+...|+  .++++++++|++.++||+|.+.
T Consensus       238 ~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~  317 (450)
T PRK14087        238 NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIK  317 (450)
T ss_pred             cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHH
Confidence             345788877665    35689999984   8999999999999999999998885  6999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHH-----HHcCCChHH-HHHHHHHHHHH
Q 017844          230 LSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEL-----LLNCVPPVV-VLKRLLYELLK  303 (365)
Q Consensus       230 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l-----~~~~~~~~~-il~~l~~~l~~  303 (365)
                      +.|..+...+..-.....++.......+.++...--...+++.+.++...+|.+     ....-.... ..+++++||++
T Consensus       318 gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~~~~~~t~~~I~~~Va~~~~i~~~dl~s~~R~~~i~~~RqiamyL~r  397 (450)
T PRK14087        318 GSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTK  397 (450)
T ss_pred             HHHHHHHHHHhcccCCCCCCHHHHHHHHhhccccccCCCCHHHHHHHHHHHcCCCHHHHhCCCCCccccHHHHHHHHHHH
Confidence            999988654332101122333333333332211001124667788888877742     222222222 37899999999


Q ss_pred             hCCHHHHHHHHHHHHHhhhhhH
Q 017844          304 RLDAEIKHEVCHWAAYYVSISF  325 (365)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~  325 (365)
                      .+++.+.+++++.+++.+|...
T Consensus       398 ~~t~~sl~~IG~~FggrdHsTV  419 (450)
T PRK14087        398 EILNHTLAQIGEEFGGRDHTTV  419 (450)
T ss_pred             HHcCCCHHHHHHHhCCCChHHH
Confidence            9999999999999999998743

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.87  E-value=1.6e-20  Score=172.59  Aligned_cols=270  Identities=17%  Similarity=0.265  Sum_probs=191.5

Q ss_pred             CCCcccc---CHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCcc--ceeccccceecCCCccee
Q 017844           11 TLDQVIV---HQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEK--VKVENKTWKIDAGSRNID   83 (365)
Q Consensus        11 ~~~~iig---~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~--i~~~~~~~~~~~~~~~~~   83 (365)
                      +|+.++.   +..+......+.+..  ..++++|+||.|+|||+|+++++++.....+..  +++....|          
T Consensus        85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f----------  154 (408)
T COG0593          85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF----------  154 (408)
T ss_pred             chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH----------
Confidence            6777763   455555656665542  234499999999999999999999876544322  11111111          


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHh-----cCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhh
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEK  156 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~  156 (365)
                                                ..+++..+..     .+.    .. ..++++||+++.+..  ..++.|+.+++.
T Consensus       155 --------------------------~~~~v~a~~~~~~~~Fk~----~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~  203 (408)
T COG0593         155 --------------------------TNDFVKALRDNEMEKFKE----KY-SLDLLLIDDIQFLAGKERTQEEFFHTFNA  203 (408)
T ss_pred             --------------------------HHHHHHHHHhhhHHHHHH----hh-ccCeeeechHhHhcCChhHHHHHHHHHHH
Confidence                                      0111111110     000    01 347999999998864  458888888887


Q ss_pred             hcCce-eEEEEecCCCc----ccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q 017844          157 YSASC-RLILCCNSSSK----VTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRA  228 (365)
Q Consensus       157 ~~~~~-~~Il~t~~~~~----l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~a  228 (365)
                      ...+. .+|+++..+++    +.+.++||+   ..+.+.+|+.+....+|.+.+...++.++++++.+++.....|+|.+
T Consensus       204 l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReL  283 (408)
T COG0593         204 LLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVREL  283 (408)
T ss_pred             HHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHH
Confidence            65444 67777766653    668999997   48999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHH-----HHcCCChHHH-HHHHHHHHH
Q 017844          229 ILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEL-----LLNCVPPVVV-LKRLLYELL  302 (365)
Q Consensus       229 i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l-----~~~~~~~~~i-l~~l~~~l~  302 (365)
                      ...|+++..++...  ...++.+...+.+.++...-.+ .++.++.+....+|.+     +.+.-..... .+++++||.
T Consensus       284 egaL~~l~~~a~~~--~~~iTi~~v~e~L~~~~~~~~~-itie~I~~~Va~~y~v~~~dl~s~~R~~~i~~~RqiamyL~  360 (408)
T COG0593         284 EGALNRLDAFALFT--KRAITIDLVKEILKDLLRAGEK-ITIEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLA  360 (408)
T ss_pred             HHHHHHHHHHHHhc--CccCcHHHHHHHHHHhhccccc-CCHHHHHHHHHHHhCCCHHHhhccccccccchHHHHHHHHH
Confidence            99999887775421  1234444555555555554444 7888888888888843     2333333333 679999999


Q ss_pred             HhCCHHHHHHHHHHHHHhhhhhH
Q 017844          303 KRLDAEIKHEVCHWAAYYVSISF  325 (365)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~  325 (365)
                      +.+++.+.+++++.++ .||...
T Consensus       361 r~lt~~Slp~IG~~Fg-rdHtTV  382 (408)
T COG0593         361 RELTNLSLPEIGKAFG-RDHTTV  382 (408)
T ss_pred             HHHccCcHHHHHHHhC-CCccHH
Confidence            9999999999999999 998843

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=99.87  E-value=2.7e-20  Score=166.93  Aligned_cols=184  Identities=14%  Similarity=0.156  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceec
Q 017844           19 QDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL   97 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (365)
                      ..+++.+++.++.++.+| ++|+|+.|+||+++++.+++.++|...+.+.-..     .|.    +          ...+
T Consensus         2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~-----~p~----n----------~~~~   62 (299)
T PRK07132          2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE-----LPA----N----------IILF   62 (299)
T ss_pred             chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC-----CCc----c----------eEEe
Confidence            356788999999999999 9999999999999999999999885432110000     000    0          0111


Q ss_pred             CCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHH
Q 017844           98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI  177 (365)
Q Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l  177 (365)
                      .+. ........+++..+.+... +.   ..++++|+|||+++.++..++|+|+++||+||+++.||++|+++.++.+++
T Consensus        63 d~~-g~~i~vd~Ir~l~~~~~~~-~~---~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI  137 (299)
T PRK07132         63 DIF-DKDLSKSEFLSAINKLYFS-SF---VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTI  137 (299)
T ss_pred             ccC-CCcCCHHHHHHHHHHhccC-Cc---ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHH
Confidence            110 1111112344443333211 11   235889999999999999999999999999999999999999999999999


Q ss_pred             hccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       178 ~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      +|||++++|.+++.+++..+|...    +  ++++....++..++ ++++|+.+++
T Consensus       138 ~SRc~~~~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~  186 (299)
T PRK07132        138 VSRCQVFNVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYIN  186 (299)
T ss_pred             HhCeEEEECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHh
Confidence            999999999999999999998742    3  66777888887777 5999998854

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.87  E-value=2.4e-20  Score=163.52  Aligned_cols=182  Identities=14%  Similarity=0.298  Sum_probs=135.2

Q ss_pred             CCCccc--cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844           11 TLDQVI--VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus        11 ~~~~ii--g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      +|++++  ++..+...++.+......++++|+||+|+||||+++++++.+........+++                   
T Consensus        20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-------------------   80 (235)
T PRK08084         20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-------------------   80 (235)
T ss_pred             CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-------------------
Confidence            788887  47778888888876665566999999999999999999987643211111100                   


Q ss_pred             cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhcC--ceeEE
Q 017844           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA--SCRLI  164 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~--~~~~I  164 (365)
                              .  .....    ...+.++.+.           ..++++|||++.+.  ...+..|+.+++....  +..+|
T Consensus        81 --------~--~~~~~----~~~~~~~~~~-----------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li  135 (235)
T PRK08084         81 --------L--DKRAW----FVPEVLEGME-----------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLL  135 (235)
T ss_pred             --------H--HHHhh----hhHHHHHHhh-----------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEE
Confidence                    0  00000    0112222221           23689999999885  4456667777765432  34688


Q ss_pred             EEecCCCc----ccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          165 LCCNSSSK----VTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       165 l~t~~~~~----l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                      ++++.+..    +.+.++|||   .++.+.+|+.+++.+++++.+...|+.++++++++|++.++||+|.+++.++.+.
T Consensus       136 ~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~  214 (235)
T PRK08084        136 ITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD  214 (235)
T ss_pred             EeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            88886642    579999999   7999999999999999999898899999999999999999999999999999864

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.86  E-value=7.8e-21  Score=182.37  Aligned_cols=278  Identities=16%  Similarity=0.212  Sum_probs=181.2

Q ss_pred             CCCccc-c--CHHHHHHHHHHHHcC-C-CCeEEEECCCCCcHHHHHHHHHHHhcCCCC--ccceeccccceecCCCccee
Q 017844           11 TLDQVI-V--HQDIAQNLKKLVTEQ-D-CPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        11 ~~~~ii-g--~~~~~~~l~~~l~~~-~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~i~~~~~~~~~~~~~~~~~   83 (365)
                      +|++++ |  +..+...++.+.... . ..+++|+||+|+|||++++++++++....+  ..+++++..+          
T Consensus       120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~----------  189 (450)
T PRK00149        120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF----------  189 (450)
T ss_pred             cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH----------
Confidence            788865 3  455667777766542 2 234999999999999999999998754321  1222222111          


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhhcC-c
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSA-S  160 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~-~  160 (365)
                            . ......    ...   ....++.+.+           ...++++|||++.+..  ..+..|+.+++.... +
T Consensus       190 ------~-~~~~~~----~~~---~~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~  244 (450)
T PRK00149        190 ------T-NDFVNA----LRN---NTMEEFKEKY-----------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG  244 (450)
T ss_pred             ------H-HHHHHH----HHc---CcHHHHHHHH-----------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC
Confidence                  0 000000    000   0011222211           1347999999998753  356778888776433 3


Q ss_pred             eeEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          161 CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       161 ~~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      ..+|++++.+.    .+.+.++||+   .++.|.+|+.+++.++|++.+...++.++++++++|++.+.||+|.+.+.|+
T Consensus       245 ~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~  324 (450)
T PRK00149        245 KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN  324 (450)
T ss_pred             CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence            45777777654    2668899998   4899999999999999999999999999999999999999999999999998


Q ss_pred             HHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHH-----HHcCCChHH-HHHHHHHHHHHhCCH
Q 017844          234 TCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEL-----LLNCVPPVV-VLKRLLYELLKRLDA  307 (365)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l-----~~~~~~~~~-il~~l~~~l~~~~~~  307 (365)
                      .+...+...  ...++....+..+.++...--+..+.+.+.++...+|.+     ...+-.... ..+++++||.+.+.+
T Consensus       325 ~l~~~~~~~--~~~it~~~~~~~l~~~~~~~~~~~~~~~i~~~v~~~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~  402 (450)
T PRK00149        325 RLIAYASLT--GKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTD  402 (450)
T ss_pred             HHHHHHHhh--CCCCCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccChHHHHHHHHHHHhcC
Confidence            876654321  122333333333333221111123456666666666632     112122112 377999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhH
Q 017844          308 EIKHEVCHWAAYYVSISF  325 (365)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~  325 (365)
                      .+.+++++.+++.+|...
T Consensus       403 ~s~~~Ig~~fg~rdhstV  420 (450)
T PRK00149        403 LSLPEIGRAFGGRDHTTV  420 (450)
T ss_pred             CCHHHHHHHcCCCCHhHH
Confidence            999999999998888743

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.86  E-value=1.9e-20  Score=180.18  Aligned_cols=276  Identities=15%  Similarity=0.189  Sum_probs=180.5

Q ss_pred             CCCcccc---CHHHHHHHHHHHHc-CCCCe-EEEECCCCCcHHHHHHHHHHHhcCC--CCccceeccccceecCCCccee
Q 017844           11 TLDQVIV---HQDIAQNLKKLVTE-QDCPH-LLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        11 ~~~~iig---~~~~~~~l~~~l~~-~~~~~-lll~Gp~G~GKTtla~~la~~l~~~--~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      +|++++.   +..+...+..++.. +...+ ++|||++|+|||+|++++++++...  ....+++.+..|          
T Consensus       286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef----------  355 (617)
T PRK14086        286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF----------  355 (617)
T ss_pred             CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH----------
Confidence            7899873   23344455555543 22223 9999999999999999999987432  212222222111          


Q ss_pred             ccccccccccce-ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhhcC-
Q 017844           84 LELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSA-  159 (365)
Q Consensus        84 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~-  159 (365)
                                 + ++... .  .+ ....++.+.           ....++|+|||++.+..  ..+..|+.+++.... 
T Consensus       356 -----------~~el~~a-l--~~-~~~~~f~~~-----------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~  409 (617)
T PRK14086        356 -----------TNEFINS-I--RD-GKGDSFRRR-----------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA  409 (617)
T ss_pred             -----------HHHHHHH-H--Hh-ccHHHHHHH-----------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc
Confidence                       0 00000 0  00 001111111           12358999999998843  456788888887644 


Q ss_pred             ceeEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 017844          160 SCRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSF  232 (365)
Q Consensus       160 ~~~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l  232 (365)
                      +..+|++++...    .+.+.|+||+   .++.+.+|+.+.+.++|++.+...++.++++++++|++...+|+|.+...|
T Consensus       410 gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL  489 (617)
T PRK14086        410 NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGAL  489 (617)
T ss_pred             CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence            356777777654    4678999998   489999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHH-HhccChhHHHHHHHHHHHH-----HHcCCChHH-HHHHHHHHHHHhC
Q 017844          233 ETCRVQQYPFKDNQAIPAMDWEEFVFEIASDI-MQEQSPKRLFQVRGKLYEL-----LLNCVPPVV-VLKRLLYELLKRL  305 (365)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i-~~~~~~~~~~~~~~~l~~l-----~~~~~~~~~-il~~l~~~l~~~~  305 (365)
                      +++...+...  ...++....+..+.+++..- ....+.+.+.++...+|.+     ...+-.... ..+++++||++.+
T Consensus       490 ~rL~a~a~~~--~~~itl~la~~vL~~~~~~~~~~~it~d~I~~~Va~~f~v~~~dl~s~~R~~~i~~aRqiAMYL~r~l  567 (617)
T PRK14086        490 IRVTAFASLN--RQPVDLGLTEIVLRDLIPEDSAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCREL  567 (617)
T ss_pred             HHHHHHHHhh--CCCCCHHHHHHHHHHhhccccCCcCCHHHHHHHHHHHhCCCHHHHhCCCCCcccchHHHHHHHHHHHH
Confidence            9886654321  12233322333332222210 1123566777777777742     222222112 3779999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhH
Q 017844          306 DAEIKHEVCHWAAYYVSISF  325 (365)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~  325 (365)
                      .+.+..+|+..++ .+|...
T Consensus       568 t~~Sl~~IG~~Fg-RdHSTV  586 (617)
T PRK14086        568 TDLSLPKIGQQFG-RDHTTV  586 (617)
T ss_pred             cCCCHHHHHHHhC-CChhHH
Confidence            9999999999998 888733

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.86  E-value=9.5e-21  Score=179.69  Aligned_cols=275  Identities=17%  Similarity=0.206  Sum_probs=176.8

Q ss_pred             CCCccc-cC--HHHHHHHHHHHHc-CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCC--CccceeccccceecCCCccee
Q 017844           11 TLDQVI-VH--QDIAQNLKKLVTE-QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        11 ~~~~ii-g~--~~~~~~l~~~l~~-~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~--~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      +|++++ |.  ..+...++.+... +. ..+++|+||+|+|||++++++++++....  ...+++++..+          
T Consensus       108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~----------  177 (405)
T TIGR00362       108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF----------  177 (405)
T ss_pred             cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH----------
Confidence            677854 53  3345566665554 22 23389999999999999999999875432  12222222111          


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhhc-Cc
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYS-AS  160 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~-~~  160 (365)
                            .    -.+... ....   ...++.+.+           ...++++|||++.+..  ..+..|+.+++... .+
T Consensus       178 ------~----~~~~~~-~~~~---~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~  232 (405)
T TIGR00362       178 ------T----NDFVNA-LRNN---KMEEFKEKY-----------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENG  232 (405)
T ss_pred             ------H----HHHHHH-HHcC---CHHHHHHHH-----------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC
Confidence                  0    000000 0000   011222211           1237999999998753  45677888887643 34


Q ss_pred             eeEEEEecCCC----cccHHHhccce---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          161 CRLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       161 ~~~Il~t~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      ..+|++++...    .+.+.++||+.   .+.|++|+.+++..+|++.+...++.++++++++|++...||+|.+.+.++
T Consensus       233 ~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~  312 (405)
T TIGR00362       233 KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALN  312 (405)
T ss_pred             CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence            56777777544    36678999984   799999999999999999999999999999999999999999999999988


Q ss_pred             HHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHH-----HHcCCChHH-HHHHHHHHHHHhCCH
Q 017844          234 TCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEL-----LLNCVPPVV-VLKRLLYELLKRLDA  307 (365)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l-----~~~~~~~~~-il~~l~~~l~~~~~~  307 (365)
                      .+...+..  ....++....+..+.+.+..-.+..+.+.+.++....|.+     ...+-.... ..+++++|+.+.+.+
T Consensus       313 ~l~~~a~~--~~~~it~~~~~~~L~~~~~~~~~~it~~~I~~~Va~~~~v~~~~l~~~~r~~~~~~~R~~amyl~~~~~~  390 (405)
T TIGR00362       313 RLLAYASL--TGKPITLELAKEALKDLLRAKKKEITIENIQEVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTD  390 (405)
T ss_pred             HHHHHHHH--hCCCCCHHHHHHHHHHhccccCCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccchHHHHHHHHHHHHcC
Confidence            87665432  1122333333333332221111223556666666666532     222222222 378999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 017844          308 EIKHEVCHWAAYYVS  322 (365)
Q Consensus       308 ~~~~~~~~~~~~~~~  322 (365)
                      .+.+++++.+++.+|
T Consensus       391 ~s~~~ig~~fg~rdH  405 (405)
T TIGR00362       391 LSLPEIGRAFGGRDH  405 (405)
T ss_pred             CCHHHHHHHhCCCCC
Confidence            999999999987776

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.86  E-value=1.7e-20  Score=167.44  Aligned_cols=191  Identities=23%  Similarity=0.278  Sum_probs=132.5

Q ss_pred             CCCccccCHHHHHHHHHHHH----------c-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844           11 TLDQVIVHQDIAQNLKKLVT----------E-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~----------~-----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~   75 (365)
                      .+++++|.+.+++.++..+.          .     +..+|++|+|||||||||+|+++++.+.....            
T Consensus         4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~------------   71 (261)
T TIGR02881         4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV------------   71 (261)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc------------
Confidence            35789999999887765431          1     23456999999999999999999997643210            


Q ss_pred             cCCCcceeccccccccccceecCCCCc----CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------
Q 017844           76 DAGSRNIDLELTTLSSANHVELSPSDA----GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (365)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--------  143 (365)
                      .+.+             .++...+++.    -......+++.+...            ...|+||||+|.|.        
T Consensus        72 ~~~~-------------~~v~~~~~~l~~~~~g~~~~~~~~~~~~a------------~~~VL~IDE~~~L~~~~~~~~~  126 (261)
T TIGR02881        72 LSKG-------------HLIEVERADLVGEYIGHTAQKTREVIKKA------------LGGVLFIDEAYSLARGGEKDFG  126 (261)
T ss_pred             ccCC-------------ceEEecHHHhhhhhccchHHHHHHHHHhc------------cCCEEEEechhhhccCCccchH
Confidence            0000             0111111110    000111122322211            12599999999875        


Q ss_pred             HHHHHHHHHHHhhhcCceeEEEEecCCC-----cccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844          144 REAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (365)
Q Consensus       144 ~~~~~~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i  217 (365)
                      .+.++.|++.+++...+..+|+++...+     .+.++++||| ..+.|++++.+++.+++++.+...+..++++++..+
T Consensus       127 ~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l  206 (261)
T TIGR02881       127 KEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL  206 (261)
T ss_pred             HHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence            4567889999998776777777655432     3678999999 579999999999999999999999999999999988


Q ss_pred             HHH----------cCCCHHHHHHHHHHHHhc
Q 017844          218 AEK----------SNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       218 ~~~----------~~g~lr~ai~~l~~~~~~  238 (365)
                      ++.          +.||.|.+.|+++.+...
T Consensus       207 ~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~  237 (261)
T TIGR02881       207 REHLYKVDQLSSREFSNARYVRNIIEKAIRR  237 (261)
T ss_pred             HHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence            653          359999999999987654

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.85  E-value=6.8e-20  Score=174.24  Aligned_cols=277  Identities=14%  Similarity=0.153  Sum_probs=176.1

Q ss_pred             CCCccc-cC--HHHHHHHHHHHHc-CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC--ccceeccccceecCCCcceec
Q 017844           11 TLDQVI-VH--QDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus        11 ~~~~ii-g~--~~~~~~l~~~l~~-~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      +|++++ |.  ..+......+... +...+++||||+|+|||+|++++++++....+  ..+++++..|           
T Consensus       103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f-----------  171 (440)
T PRK14088        103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF-----------  171 (440)
T ss_pred             cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH-----------
Confidence            688887 43  3444555555543 33345999999999999999999998754322  1222222111           


Q ss_pred             cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhcC-ce
Q 017844           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SC  161 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~-~~  161 (365)
                                ..-......   .....++...+.          ...++++|||++.+.  ...+..|+.+++.... +.
T Consensus       172 ----------~~~~~~~~~---~~~~~~f~~~~~----------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k  228 (440)
T PRK14088        172 ----------LNDLVDSMK---EGKLNEFREKYR----------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK  228 (440)
T ss_pred             ----------HHHHHHHHh---cccHHHHHHHHH----------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC
Confidence                      000000000   000112211111          134799999999774  3356778888876543 34


Q ss_pred             eEEEEecCCC----cccHHHhccce---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844          162 RLILCCNSSS----KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       162 ~~Il~t~~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      .+|+++++..    .+.+.++||+.   ++.+.+|+.+.+.+++++.+...++.++++++++|++...||+|.+...+..
T Consensus       229 ~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~  308 (440)
T PRK14088        229 QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIK  308 (440)
T ss_pred             eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHH
Confidence            5666666443    36678999985   8999999999999999999999999999999999999999999999999998


Q ss_pred             HHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHh--ccChhHHHHHHHHHHHH-----HHcCCChHH-HHHHHHHHHHHhCC
Q 017844          235 CRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQ--EQSPKRLFQVRGKLYEL-----LLNCVPPVV-VLKRLLYELLKRLD  306 (365)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~--~~~~~~~~~~~~~l~~l-----~~~~~~~~~-il~~l~~~l~~~~~  306 (365)
                      +...+...  ...++.....+.+.+++..-..  ..+.+.+.++...+|.+     ...+-.... ..+++++++.+.+.
T Consensus       309 l~~~~~~~--~~~it~~~a~~~L~~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~aR~iamyl~r~~~  386 (440)
T PRK14088        309 LLVYKETT--GEEVDLKEAILLLKDFIKPNRVKAMDPIDELIEIVAKVTGVSREEILSNSRNVKALLARRIGMYVAKNYL  386 (440)
T ss_pred             HHHHHHHh--CCCCCHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHcCCcHHHHhCCCCCccccHHHHHHHHHHHHHh
Confidence            76554321  1223333333333333211011  12445556666665532     112222122 37799999999988


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 017844          307 AEIKHEVCHWAAYYVSIS  324 (365)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~  324 (365)
                      +.+.+++++.++ .+|..
T Consensus       387 ~~s~~~Ig~~fg-r~hst  403 (440)
T PRK14088        387 GSSLRTIAEKFN-RSHPV  403 (440)
T ss_pred             CCCHHHHHHHhC-CCHHH
Confidence            889999999997 78773

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=99.85  E-value=6.8e-20  Score=175.73  Aligned_cols=222  Identities=24%  Similarity=0.392  Sum_probs=133.1

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc---CCC--CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE---QDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~---~~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      +|++||+|++.+++..|++.++.++.|++.   +..  ..++|+||+||||||+++++|+++...-        .+| .+
T Consensus         8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v--------~Ew-~n   78 (519)
T PF03215_consen    8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEV--------QEW-IN   78 (519)
T ss_pred             ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCee--------EEe-cC
Confidence            799999999999999999999999999975   222  2289999999999999999999873211        122 11


Q ss_pred             CCCcceeccccccccccceecCCCCcC-ccc-hhHHHHHHHHHHhcCCCC---CCCCCCceEEEEeCCCCCCHHHHHHHH
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAG-FQD-RYVVQEVIKEMAKNRPID---TKGKRGFKVLVLNEVDKLSREAQHSLR  151 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~---~~~~~~~~vliiDE~~~L~~~~~~~Ll  151 (365)
                      |.... +   ......++..... ... +.. .....++.-.......+.   .....+.+||+|||+..+.......|.
T Consensus        79 p~~~~-~---~~~~~~d~~s~~~-~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~  153 (519)
T PF03215_consen   79 PVSFR-E---SDNQEDDFESDFN-KFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFR  153 (519)
T ss_pred             CCCcc-c---ccccccccccccc-ccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHH
Confidence            21100 0   0000000000000 000 000 000111100111111110   012346789999998765433225555


Q ss_pred             HHHhhh--cCce-eEEEEecCC---C--------------cccHHHhcc--ceeEEecCCCHHHHHHHHHHHHHHc----
Q 017844          152 RTMEKY--SASC-RLILCCNSS---S--------------KVTEAIRSR--CLNIRINSPTEEQIVKVLEFIAKKE----  205 (365)
Q Consensus       152 ~~le~~--~~~~-~~Il~t~~~---~--------------~l~~~l~sR--~~~i~~~~~~~~~~~~iL~~~~~~~----  205 (365)
                      ..|.++  .... .+|++.++.   .              -+.+.+...  +..|.|+|.+..-+.+.|.+++..|    
T Consensus       154 ~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~  233 (519)
T PF03215_consen  154 EALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS  233 (519)
T ss_pred             HHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence            555543  1122 334333311   0              134555553  5689999999999999999999987    


Q ss_pred             -CC-CCC--HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          206 -GL-QLP--SGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       206 -~~-~i~--~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                       +. ..+  .+.++.|+..++||+|.||+.||.++.
T Consensus       234 ~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~  269 (519)
T PF03215_consen  234 SGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL  269 (519)
T ss_pred             cCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence             32 333  456999999999999999999999988

>PRK08727 hypothetical protein; Validated

Probab=99.85  E-value=1.7e-19  Score=157.94  Aligned_cols=183  Identities=21%  Similarity=0.330  Sum_probs=130.6

Q ss_pred             CCCCccccC-HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844           10 KTLDQVIVH-QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus        10 ~~~~~iig~-~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      .+|+++++. ......+.....+.....++|+||+|+|||+++++++..+.......++++.                  
T Consensus        16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~------------------   77 (233)
T PRK08727         16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL------------------   77 (233)
T ss_pred             CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH------------------
Confidence            389998754 4444444444433322339999999999999999999876433211111110                  


Q ss_pred             cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhc-CceeEEE
Q 017844           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYS-ASCRLIL  165 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~-~~~~~Il  165 (365)
                                 .+..  .  ...+.++.+           .+..+++|||++.+.  ...+..++.+++... .+..+|+
T Consensus        78 -----------~~~~--~--~~~~~~~~l-----------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~  131 (233)
T PRK08727         78 -----------QAAA--G--RLRDALEAL-----------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLY  131 (233)
T ss_pred             -----------HHhh--h--hHHHHHHHH-----------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEE
Confidence                       0000  0  011222221           234799999999885  445667788877643 3456888


Q ss_pred             EecCCCc----ccHHHhcc---ceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          166 CCNSSSK----VTEAIRSR---CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       166 ~t~~~~~----l~~~l~sR---~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                      +++.+..    +.+.++||   |..+.|++|+.+++.+++++++..+++.++++++++|++.++||+|.+++.|+.+.
T Consensus       132 ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~  209 (233)
T PRK08727        132 TARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD  209 (233)
T ss_pred             ECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8886553    56999999   77999999999999999999999999999999999999999999999999998765

>PRK06893 DNA replication initiation factor; Validated

Probab=99.85  E-value=1.2e-19  Score=158.56  Aligned_cols=185  Identities=18%  Similarity=0.275  Sum_probs=128.3

Q ss_pred             CCCCCCccccCHHHH--HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecc
Q 017844            8 RPKTLDQVIVHQDIA--QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (365)
Q Consensus         8 rP~~~~~iig~~~~~--~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~   85 (365)
                      +|.+|+++++++...  ..+.........+.++|+||+|+||||+++++++++........++.                
T Consensus        11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----------------   74 (229)
T PRK06893         11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----------------   74 (229)
T ss_pred             CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----------------
Confidence            456999999765432  23333333333344899999999999999999998644322111111                


Q ss_pred             ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhcC-cee
Q 017844           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SCR  162 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~-~~~  162 (365)
                                 ......      ...+.++.           ..+.++++|||++.+.  ...+..|+.+++.... +..
T Consensus        75 -----------~~~~~~------~~~~~~~~-----------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~  126 (229)
T PRK06893         75 -----------LSKSQY------FSPAVLEN-----------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKT  126 (229)
T ss_pred             -----------HHHhhh------hhHHHHhh-----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCc
Confidence                       100000      00111211           1234799999999874  4445678888876543 233


Q ss_pred             E-EEEecCCCc----ccHHHhccce---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844          163 L-ILCCNSSSK----VTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       163 ~-Il~t~~~~~----l~~~l~sR~~---~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      + |++++....    ..+.++||+.   .+.+++|+.+++.+++++.+...++.++++++++|++.++||+|.+++.++.
T Consensus       127 illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~  206 (229)
T PRK06893        127 LLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDL  206 (229)
T ss_pred             EEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence            4 455555432    4489999985   8999999999999999999999999999999999999999999999999998


Q ss_pred             HH
Q 017844          235 CR  236 (365)
Q Consensus       235 ~~  236 (365)
                      +.
T Consensus       207 l~  208 (229)
T PRK06893        207 LD  208 (229)
T ss_pred             HH
Confidence            74

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.83  E-value=3.1e-19  Score=156.29  Aligned_cols=183  Identities=17%  Similarity=0.289  Sum_probs=135.6

Q ss_pred             CCCCCCccc--cCHHHHHHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844            8 RPKTLDQVI--VHQDIAQNLKKLVTEQ-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus         8 rP~~~~~ii--g~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      +|.+|++++  ++..+...++.+.... ...+++|+||+|+|||++++++++.........+++++..            
T Consensus        13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~------------   80 (227)
T PRK08903         13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS------------   80 (227)
T ss_pred             ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH------------
Confidence            456899988  3577788888887643 3345999999999999999999997644332222211100            


Q ss_pred             cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCce--e
Q 017844           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC--R  162 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~--~  162 (365)
                                                  ......        .....++++|||++.++...+..|+..++....+.  .
T Consensus        81 ----------------------------~~~~~~--------~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~  124 (227)
T PRK08903         81 ----------------------------PLLAFD--------FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGA  124 (227)
T ss_pred             ----------------------------hHHHHh--------hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcE
Confidence                                        000000        01234799999999999888899999997754333  3


Q ss_pred             EEEEecCCC---cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          163 LILCCNSSS---KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       163 ~Il~t~~~~---~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                      ++++++...   .+.+.+.||+   ..+++++|+.++...++.+.+...++.+++++++.+++.+.||+|.+.+.++.+.
T Consensus       125 vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~  204 (227)
T PRK08903        125 LLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALD  204 (227)
T ss_pred             EEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            455554332   3557888896   6999999999999999999998999999999999999999999999999999865


Q ss_pred             hc
Q 017844          237 VQ  238 (365)
Q Consensus       237 ~~  238 (365)
                      .+
T Consensus       205 ~~  206 (227)
T PRK08903        205 RY  206 (227)
T ss_pred             HH
Confidence            43

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.83  E-value=3.5e-19  Score=164.97  Aligned_cols=219  Identities=20%  Similarity=0.305  Sum_probs=138.3

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHH-----cCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT-----EQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~-----~~~~~~--lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~   74 (365)
                      +|++||+|.+.+++..|+..+..++.|++     ....++  +||+||+||||||.++.+++++.-.        -.+| 
T Consensus        71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~--------~~Ew-  141 (634)
T KOG1970|consen   71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ--------LIEW-  141 (634)
T ss_pred             hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCce--------eeee-
Confidence            69999999999999999999999999998     555554  9999999999999999999987321        1122 


Q ss_pred             ecCCCcceeccccccccccceecCCCCcC--ccchh-HHHHHHHHHHhcCCC---CCCCCCCceEEEEeCCCCCCH-HHH
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAG--FQDRY-VVQEVIKEMAKNRPI---DTKGKRGFKVLVLNEVDKLSR-EAQ  147 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~---~~~~~~~~~vliiDE~~~L~~-~~~  147 (365)
                      .+|...  ..       +.+..-.....+  ..... ..+.++........+   +......+++|+|||+..... +..
T Consensus       142 ~Npi~~--~~-------~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~  212 (634)
T KOG1970|consen  142 SNPINL--KE-------PENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDS  212 (634)
T ss_pred             cCCccc--cc-------cccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhH
Confidence            111110  00       000000000001  00000 112222222111111   112345668999999855432 233


Q ss_pred             HHHHHHHhhh---cCceeEEEEecCCC--------cccHH--HhccceeEEecCCCHHHHHHHHHHHHHHcCCCCC----
Q 017844          148 HSLRRTMEKY---SASCRLILCCNSSS--------KVTEA--IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP----  210 (365)
Q Consensus       148 ~~Ll~~le~~---~~~~~~Il~t~~~~--------~l~~~--l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~----  210 (365)
                      ..+...|..+   +....+|++|+...        ..+..  ..-|...|.|+|....-+.+.|+++|..++...+    
T Consensus       213 ~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~  292 (634)
T KOG1970|consen  213 ETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKV  292 (634)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence            3444444433   22334555555433        12233  3445579999999999999999999998877666    


Q ss_pred             --HHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844          211 --SGFATRLAEKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       211 --~~~~~~i~~~~~g~lr~ai~~l~~~~~~  238 (365)
                        ...++.++..++||+|.||+.||..+..
T Consensus       293 ~~~~~v~~i~~~s~GDIRsAInsLQlsssk  322 (634)
T KOG1970|consen  293 PDTAEVELICQGSGGDIRSAINSLQLSSSK  322 (634)
T ss_pred             chhHHHHHHHHhcCccHHHHHhHhhhhccc
Confidence              6779999999999999999999988543

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.83  E-value=7.7e-20  Score=154.54  Aligned_cols=183  Identities=25%  Similarity=0.370  Sum_probs=126.9

Q ss_pred             CCCCCCccccCHHHHHHHHHHH---Hc----C--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLV---TE----Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l---~~----~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      +--+|+|++||+++++..+-..   ++    |  ...++|||||||||||.+|+++|++..-|-                
T Consensus       116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----------------  179 (368)
T COG1223         116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----------------  179 (368)
T ss_pred             ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----------------
Confidence            3458999999999987665544   32    2  234599999999999999999998652111                


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC------------HHH
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------REA  146 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------------~~~  146 (365)
                              -...+...+.   ...| .....+.++.......         .+.|++|||+|.+.            .+.
T Consensus       180 --------l~vkat~liG---ehVG-dgar~Ihely~rA~~~---------aPcivFiDE~DAiaLdRryQelRGDVsEi  238 (368)
T COG1223         180 --------LLVKATELIG---EHVG-DGARRIHELYERARKA---------APCIVFIDELDAIALDRRYQELRGDVSEI  238 (368)
T ss_pred             --------EEechHHHHH---HHhh-hHHHHHHHHHHHHHhc---------CCeEEEehhhhhhhhhhhHHHhcccHHHH
Confidence                    0011111111   0001 1112344555444433         34799999998763            346


Q ss_pred             HHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017844          147 QHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR  223 (365)
Q Consensus       147 ~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g  223 (365)
                      .|+||.-|+...  ..+.+|.+||+++-++++++||+. .|+|.-|+.+++..+++..+++-.+.++.. ++.++..+.|
T Consensus       239 VNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g  317 (368)
T COG1223         239 VNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKG  317 (368)
T ss_pred             HHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCC
Confidence            678888887543  357899999999999999999996 899999999999999999998877766655 7777777665


Q ss_pred             -CHHHH
Q 017844          224 -SLRRA  228 (365)
Q Consensus       224 -~lr~a  228 (365)
                       +-|+.
T Consensus       318 ~SgRdi  323 (368)
T COG1223         318 MSGRDI  323 (368)
T ss_pred             CCchhH
Confidence             33433

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.81  E-value=1.1e-18  Score=172.23  Aligned_cols=216  Identities=22%  Similarity=0.310  Sum_probs=143.2

Q ss_pred             ccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC-------CCccceeccccceec
Q 017844            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-------GAEKVKVENKTWKID   76 (365)
Q Consensus         4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-------~~~~i~~~~~~~~~~   76 (365)
                      .+.+||++|++++|++..++.+...+..+...+++|+|||||||||+|+.+.+.....       ....+.++|..+.. 
T Consensus       145 ~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-  223 (615)
T TIGR02903       145 QSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-  223 (615)
T ss_pred             hhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-
Confidence            5679999999999999999988888876766679999999999999999998754221       11122333221100 


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcC---CC-CCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR---PI-DTKGKRGFKVLVLNEVDKLSREAQHSLRR  152 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-~~~~~~~~~vliiDE~~~L~~~~~~~Ll~  152 (365)
                            +        ...+  ...-.+..........-+.+....   +. .........+++|||++.|+...++.|++
T Consensus       224 ------d--------~~~i--~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~  287 (615)
T TIGR02903       224 ------D--------PREV--TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLK  287 (615)
T ss_pred             ------C--------HHHH--hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHH
Confidence                  0        0000  000000000000000001111100   00 00011223599999999999999999999


Q ss_pred             HHhhhc--------------------------CceeEEEE--ec-CCCcccHHHhccceeEEecCCCHHHHHHHHHHHHH
Q 017844          153 TMEKYS--------------------------ASCRLILC--CN-SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK  203 (365)
Q Consensus       153 ~le~~~--------------------------~~~~~Il~--t~-~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~  203 (365)
                      .|++..                          ....++++  |+ ++..+.++++|||..+.|++++.+++..++++.+.
T Consensus       288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~  367 (615)
T TIGR02903       288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE  367 (615)
T ss_pred             HHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence            998631                          11223443  33 45578899999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          204 KEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       204 ~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.+++++++.|++.+. +.|++++.|+.++.
T Consensus       368 ~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~~  400 (615)
T TIGR02903       368 KINVHLAAGVEELIARYTI-EGRKAVNILADVYG  400 (615)
T ss_pred             HcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            8888899999999998754 78999999986643

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.81  E-value=1.5e-18  Score=151.99  Aligned_cols=185  Identities=19%  Similarity=0.330  Sum_probs=134.5

Q ss_pred             CCCCCcccc--CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844            9 PKTLDQVIV--HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus         9 P~~~~~iig--~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      |.+|+++++  +..+++.++.++......+++|+||+|||||++++.+++.........+++++..+             
T Consensus        11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~-------------   77 (226)
T TIGR03420        11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL-------------   77 (226)
T ss_pred             chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH-------------
Confidence            457888873  67788999998766555669999999999999999999876433222222222111             


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhhc-CceeE
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--QHSLRRTMEKYS-ASCRL  163 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~--~~~Ll~~le~~~-~~~~~  163 (365)
                                      .  .  ...+.+..           ..+.++++|||++.++...  ++.|...++... .+..+
T Consensus        78 ----------------~--~--~~~~~~~~-----------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~i  126 (226)
T TIGR03420        78 ----------------A--Q--ADPEVLEG-----------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRL  126 (226)
T ss_pred             ----------------H--H--hHHHHHhh-----------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeE
Confidence                            0  0  00111111           1233699999999987643  778888877642 23467


Q ss_pred             EEEecCCC-c--cc-HHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          164 ILCCNSSS-K--VT-EAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       164 Il~t~~~~-~--l~-~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                      |++++... .  .. +.+.+|+   ..+.+++++.++...+++..+.+.++.+++++++.|++.++||+|.+.+.++.+.
T Consensus       127 Iits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~  206 (226)
T TIGR03420       127 LIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALD  206 (226)
T ss_pred             EEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            77776543 2  22 7788887   4899999999999999999888889999999999999999999999999988754


Q ss_pred             h
Q 017844          237 V  237 (365)
Q Consensus       237 ~  237 (365)
                      .
T Consensus       207 ~  207 (226)
T TIGR03420       207 R  207 (226)
T ss_pred             H
Confidence            3

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>CHL00181 cbbX CbbX; Provisional

Probab=99.80  E-value=1.7e-18  Score=155.53  Aligned_cols=189  Identities=18%  Similarity=0.284  Sum_probs=130.0

Q ss_pred             CccccCHHHHHHHHHHHH--------c-------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844           13 DQVIVHQDIAQNLKKLVT--------E-------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~--------~-------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      ++++|.+.+++.+++++.        .       +...|++|+|||||||||+|+++++.+......            +
T Consensus        23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~------------~   90 (287)
T CHL00181         23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI------------K   90 (287)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC------------C
Confidence            368999999887776542        0       123459999999999999999999976422110            0


Q ss_pred             CCcceeccccccccccceecCCCC-----cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---------C
Q 017844           78 GSRNIDLELTTLSSANHVELSPSD-----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------S  143 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L---------~  143 (365)
                      .             ..++.+...+     .+... ...++.++.            ....|+||||++.+         .
T Consensus        91 ~-------------~~~~~v~~~~l~~~~~g~~~-~~~~~~l~~------------a~ggVLfIDE~~~l~~~~~~~~~~  144 (287)
T CHL00181         91 K-------------GHLLTVTRDDLVGQYIGHTA-PKTKEVLKK------------AMGGVLFIDEAYYLYKPDNERDYG  144 (287)
T ss_pred             C-------------CceEEecHHHHHHHHhccch-HHHHHHHHH------------ccCCEEEEEccchhccCCCccchH
Confidence            0             0011111110     01000 011222221            12269999999986         4


Q ss_pred             HHHHHHHHHHHhhhcCceeEEEEecCCC-----cccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844          144 REAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (365)
Q Consensus       144 ~~~~~~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i  217 (365)
                      .++++.|++.|++...++++|++++...     ...|+++|||. .+.|++++.+++.+++...+.+.+..+++++...+
T Consensus       145 ~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L  224 (287)
T CHL00181        145 SEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKAL  224 (287)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHH
Confidence            5678899999998777777777765322     23589999996 89999999999999999999999999999887766


Q ss_pred             HHH--------cCCCHHHHHHHHHHHHhcC
Q 017844          218 AEK--------SNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       218 ~~~--------~~g~lr~ai~~l~~~~~~~  239 (365)
                      ...        .-||.|.+.++++.+....
T Consensus       225 ~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~  254 (287)
T CHL00181        225 LDYIKKRMEQPLFANARSVRNALDRARMRQ  254 (287)
T ss_pred             HHHHHHhCCCCCCccHHHHHHHHHHHHHHH
Confidence            663        3489999999999876553

>PRK06620 hypothetical protein; Validated

Probab=99.80  E-value=3e-18  Score=147.57  Aligned_cols=168  Identities=17%  Similarity=0.178  Sum_probs=119.4

Q ss_pred             CCCccc---cCHHHHHHHHHHHHc-CCC---CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           11 TLDQVI---VHQDIAQNLKKLVTE-QDC---PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        11 ~~~~ii---g~~~~~~~l~~~l~~-~~~---~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      +|++++   .+..+...++.+.+. +..   +.++|+||+|+||||+++++++....           .+          
T Consensus        14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----------~~----------   72 (214)
T PRK06620         14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----------YI----------   72 (214)
T ss_pred             CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----------EE----------
Confidence            566665   356788888888763 222   33999999999999999998774210           00          


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC-cee
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-SCR  162 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~-~~~  162 (365)
                                    .... ..     ..+    .          ....++++|||+|.+...   .|+.+++.... +..
T Consensus        73 --------------~~~~-~~-----~~~----~----------~~~~d~lliDdi~~~~~~---~lf~l~N~~~e~g~~  115 (214)
T PRK06620         73 --------------IKDI-FF-----NEE----I----------LEKYNAFIIEDIENWQEP---ALLHIFNIINEKQKY  115 (214)
T ss_pred             --------------cchh-hh-----chh----H----------HhcCCEEEEeccccchHH---HHHHHHHHHHhcCCE
Confidence                          0000 00     001    0          012378999999977433   44444443322 235


Q ss_pred             EEEEecCCC---cccHHHhccce---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          163 LILCCNSSS---KVTEAIRSRCL---NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       163 ~Il~t~~~~---~l~~~l~sR~~---~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                      ++++++.+.   .+ +.++||+.   ++.+++|+.+++..++++.+...|+.++++++++|++.++||+|.+++.|+.+.
T Consensus       116 ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~  194 (214)
T PRK06620        116 LLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENIN  194 (214)
T ss_pred             EEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            666665444   25 89999997   999999999999999999999899999999999999999999999999999865


Q ss_pred             h
Q 017844          237 V  237 (365)
Q Consensus       237 ~  237 (365)
                      .
T Consensus       195 ~  195 (214)
T PRK06620        195 Y  195 (214)
T ss_pred             H
Confidence            3

>PRK05642 DNA replication initiation factor; Validated

Probab=99.80  E-value=6.3e-18  Score=148.01  Aligned_cols=184  Identities=16%  Similarity=0.281  Sum_probs=129.6

Q ss_pred             CCCCccc-c-CHHHHHHHHHHHHc-CC--CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844           10 KTLDQVI-V-HQDIAQNLKKLVTE-QD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus        10 ~~~~~ii-g-~~~~~~~l~~~l~~-~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      -+|++++ | +..+.+.++.+... +.  .++++|+||+|+|||+|++++++++.......++++...+           
T Consensus        16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~-----------   84 (234)
T PRK05642         16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL-----------   84 (234)
T ss_pred             ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH-----------
Confidence            3799987 3 34444555555432 11  2348999999999999999999876433222222211111           


Q ss_pred             cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhhcC-ce
Q 017844           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKYSA-SC  161 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~-~~  161 (365)
                                ..        .    ..++++.+           .+.++++|||++.+.  +..+..|+.+++.... +.
T Consensus        85 ----------~~--------~----~~~~~~~~-----------~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~  131 (234)
T PRK05642         85 ----------LD--------R----GPELLDNL-----------EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGR  131 (234)
T ss_pred             ----------Hh--------h----hHHHHHhh-----------hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCC
Confidence                      00        0    01222222           123699999999774  3556778999887544 45


Q ss_pred             eEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844          162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       162 ~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      .+|++++...    ...+.++||+   .++.+.+|+.+++.++++..+...|+.++++++++|++.++||+|.+++.++.
T Consensus       132 ~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~  211 (234)
T PRK05642        132 RLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLER  211 (234)
T ss_pred             EEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            6677766543    2468999999   78999999999999999988888899999999999999999999999999987


Q ss_pred             HHh
Q 017844          235 CRV  237 (365)
Q Consensus       235 ~~~  237 (365)
                      +..
T Consensus       212 l~~  214 (234)
T PRK05642        212 LDQ  214 (234)
T ss_pred             HHH
Confidence            753

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.80  E-value=7.1e-18  Score=145.96  Aligned_cols=194  Identities=21%  Similarity=0.351  Sum_probs=129.5

Q ss_pred             CCCccc-c--CHHHHHHHHHHHHcCC--CCeEEEECCCCCcHHHHHHHHHHHhcC--CCCccceeccccceecCCCccee
Q 017844           11 TLDQVI-V--HQDIAQNLKKLVTEQD--CPHLLFYGPPGSGKKTLIMALLRQVFG--PGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        11 ~~~~ii-g--~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~--~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      +|+.++ |  ++.+....+.......  ..+++|+||+|+|||+|++++++++..  +....++++...|          
T Consensus         6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f----------   75 (219)
T PF00308_consen    6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF----------   75 (219)
T ss_dssp             SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH----------
T ss_pred             ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH----------
Confidence            788886 4  5666777766665432  234999999999999999999998753  2222223332222          


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhhc-Cc
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHSLRRTMEKYS-AS  160 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~--~~~~Ll~~le~~~-~~  160 (365)
                                 ..-......   .....++...+           ...++++||+++.+...  .+..|+.+++... .+
T Consensus        76 -----------~~~~~~~~~---~~~~~~~~~~~-----------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~  130 (219)
T PF00308_consen   76 -----------IREFADALR---DGEIEEFKDRL-----------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG  130 (219)
T ss_dssp             -----------HHHHHHHHH---TTSHHHHHHHH-----------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT
T ss_pred             -----------HHHHHHHHH---cccchhhhhhh-----------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC
Confidence                       000000000   00011222221           23489999999998754  4888999988753 34


Q ss_pred             eeEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          161 CRLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       161 ~~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      ..+|++++.+.    .+.+.++||+   .++.+.+|+.++..+++++.+...|+.++++++++|++...+|+|.+...|+
T Consensus       131 k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~  210 (219)
T PF00308_consen  131 KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALN  210 (219)
T ss_dssp             SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred             CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence            57888886554    3678899997   4899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC
Q 017844          234 TCRVQQ  239 (365)
Q Consensus       234 ~~~~~~  239 (365)
                      ++.+++
T Consensus       211 ~l~~~~  216 (219)
T PF00308_consen  211 RLDAYA  216 (219)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887653

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.79  E-value=6.7e-18  Score=165.20  Aligned_cols=216  Identities=13%  Similarity=0.184  Sum_probs=139.2

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHHc---CCCC-e-EEEECCCCCcHHHHHHHHHHHhcCC-------CCccceecccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE---QDCP-H-LLFYGPPGSGKKTLIMALLRQVFGP-------GAEKVKVENKT   72 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~~---~~~~-~-lll~Gp~G~GKTtla~~la~~l~~~-------~~~~i~~~~~~   72 (365)
                      ..|.|   +.+.|.++..+.|...+..   +..+ + ++|+|+||||||++++.+++++...       ....++++|..
T Consensus       750 ~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~  826 (1164)
T PTZ00112        750 LDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN  826 (1164)
T ss_pred             cccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence            34666   5677887777666665542   3333 4 5799999999999999998877421       12335566643


Q ss_pred             ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 017844           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR  152 (365)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~  152 (365)
                      + ..|......+     . .......+ ..+..    ..+.+..+.....-   ......||||||+|.|....+..|+.
T Consensus       827 L-stp~sIYqvI-----~-qqL~g~~P-~~Gls----S~evLerLF~~L~k---~~r~v~IIILDEID~L~kK~QDVLYn  891 (1164)
T PTZ00112        827 V-VHPNAAYQVL-----Y-KQLFNKKP-PNALN----SFKILDRLFNQNKK---DNRNVSILIIDEIDYLITKTQKVLFT  891 (1164)
T ss_pred             c-CCHHHHHHHH-----H-HHHcCCCC-Ccccc----HHHHHHHHHhhhhc---ccccceEEEeehHhhhCccHHHHHHH
Confidence            3 1111100000     0 00000011 11111    11222222221100   12234699999999998777778887


Q ss_pred             HHhhh---cCceeEEEEecCC---CcccHHHhccce--eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---Hc
Q 017844          153 TMEKY---SASCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE---KS  221 (365)
Q Consensus       153 ~le~~---~~~~~~Il~t~~~---~~l~~~l~sR~~--~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~---~~  221 (365)
                      +++.+   ...+.+|+++|..   +.+.+.++||+.  .+.|+|++.+++.+||..++......+++++++.+|+   ..
T Consensus       892 LFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~  971 (1164)
T PTZ00112        892 LFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV  971 (1164)
T ss_pred             HHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Confidence            87754   2346677778763   367789999986  5999999999999999999886555689999999998   66


Q ss_pred             CCCHHHHHHHHHHHHhc
Q 017844          222 NRSLRRAILSFETCRVQ  238 (365)
Q Consensus       222 ~g~lr~ai~~l~~~~~~  238 (365)
                      .||+|+|+.+|..++..
T Consensus       972 SGDARKALDILRrAgEi  988 (1164)
T PTZ00112        972 SGDIRKALQICRKAFEN  988 (1164)
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            79999999999988754

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=99.78  E-value=3.2e-17  Score=138.75  Aligned_cols=182  Identities=12%  Similarity=0.122  Sum_probs=136.6

Q ss_pred             HHHHHHHHHcCCCCe-EEEECCCC-CcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCC
Q 017844           22 AQNLKKLVTEQDCPH-LLFYGPPG-SGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~-lll~Gp~G-~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (365)
                      ...+...++.++..| ++|.|.++ +||..++..+++.+.|...                       ....+++...+.+
T Consensus         2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i-----------------------~~~~HPD~~~I~p   58 (263)
T PRK06581          2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSI-----------------------PLENNPDYHFIAR   58 (263)
T ss_pred             hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCc-----------------------ccCCCCCEEEEec
Confidence            356788899999999 99999998 9999999999987766421                       0111122222222


Q ss_pred             CC-----cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCccc
Q 017844          100 SD-----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT  174 (365)
Q Consensus       100 ~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~  174 (365)
                      +.     ........+|++.+.+....     ..++++|++|++++.|+.++.|+||++|||||.++.||++|+++..++
T Consensus        59 e~~~~~~~~~I~IdqIReL~~~l~~~p-----~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LL  133 (263)
T PRK06581         59 ETSATSNAKNISIEQIRKLQDFLSKTS-----AISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASII  133 (263)
T ss_pred             cccccccCCcccHHHHHHHHHHHhhCc-----ccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCc
Confidence            21     11223345777666554433     357889999999999999999999999999999999999999999999


Q ss_pred             HHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844          175 EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       175 ~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      +|++|||+.+.|+.|......++....+..   ..+...++.|.+...-|........+.
T Consensus       134 pTIrSRCq~i~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~~  190 (263)
T PRK06581        134 STIRSRCFKINVRSSILHAYNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFIDN  190 (263)
T ss_pred             hhHhhceEEEeCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHHH
Confidence            999999999999999998888877765433   234566888888777666665555554

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.78  E-value=1.3e-17  Score=149.89  Aligned_cols=193  Identities=17%  Similarity=0.267  Sum_probs=131.2

Q ss_pred             ccccCHHHHHHHHHHHH----------cC-----CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844           14 QVIVHQDIAQNLKKLVT----------EQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~----------~~-----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      +++|.+.+++.+..++.          .|     ...|++|+||||||||++|+++++.+.......   .+ .+     
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~---~~-~~-----   93 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR---KG-HL-----   93 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc---cc-eE-----
Confidence            58999888887766532          11     112599999999999999999999764322100   00 00     


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---------CHHHHHH
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SREAQHS  149 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L---------~~~~~~~  149 (365)
                         ..+     +....+.   .-.+ .....+++.++..            ...+++|||++.|         ..+.++.
T Consensus        94 ---v~v-----~~~~l~~---~~~g-~~~~~~~~~~~~a------------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~  149 (284)
T TIGR02880        94 ---VSV-----TRDDLVG---QYIG-HTAPKTKEILKRA------------MGGVLFIDEAYYLYRPDNERDYGQEAIEI  149 (284)
T ss_pred             ---EEe-----cHHHHhH---hhcc-cchHHHHHHHHHc------------cCcEEEEechhhhccCCCccchHHHHHHH
Confidence               000     0000000   0001 1111122222221            1269999999977         3567789


Q ss_pred             HHHHHhhhcCceeEEEEecCCC-----cccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---
Q 017844          150 LRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK---  220 (365)
Q Consensus       150 Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~---  220 (365)
                      |++.|++...++++|++++...     .+.++++|||. .++|++++.+++..++...+.+.+..+++++...+...   
T Consensus       150 Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~  229 (284)
T TIGR02880       150 LLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIAL  229 (284)
T ss_pred             HHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHH
Confidence            9999998776777777665432     24689999995 89999999999999999999998889999999888775   


Q ss_pred             -----cCCCHHHHHHHHHHHHhcC
Q 017844          221 -----SNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       221 -----~~g~lr~ai~~l~~~~~~~  239 (365)
                           +.||.|.+.|.++.+....
T Consensus       230 ~~~~~~~GN~R~lrn~ve~~~~~~  253 (284)
T TIGR02880       230 RRTQPHFANARSIRNAIDRARLRQ  253 (284)
T ss_pred             hCCCCCCChHHHHHHHHHHHHHHH
Confidence                 5699999999999876654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK09087 hypothetical protein; Validated

Probab=99.77  E-value=1.1e-17  Score=145.20  Aligned_cols=172  Identities=14%  Similarity=0.186  Sum_probs=124.7

Q ss_pred             CCCcccc---CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844           11 TLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus        11 ~~~~iig---~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      +|++++.   +..+...+..+. ....+.++|+||+|+||||++++++...     +..+++..                
T Consensus        19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~----------------   76 (226)
T PRK09087         19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS-----DALLIHPN----------------   76 (226)
T ss_pred             ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc-----CCEEecHH----------------
Confidence            7999884   555667666654 2223449999999999999999988742     10011100                


Q ss_pred             ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC-ceeEEEE
Q 017844           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-SCRLILC  166 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~-~~~~Il~  166 (365)
                                   +.       ..+.+..+            ...+++|||++.+. ..+..|+.+++.... +..+|++
T Consensus        77 -------------~~-------~~~~~~~~------------~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilit  123 (226)
T PRK09087         77 -------------EI-------GSDAANAA------------AEGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMT  123 (226)
T ss_pred             -------------Hc-------chHHHHhh------------hcCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEE
Confidence                         00       00111111            11589999999874 335668888876544 4566777


Q ss_pred             ecCCCc----ccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          167 CNSSSK----VTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       167 t~~~~~----l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      ++.+..    ..+.++||+   .++++.+|+.+++.+++++.++..++.++++++++|++.+.||+|.++..++.+..
T Consensus       124 s~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~  201 (226)
T PRK09087        124 SRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDR  201 (226)
T ss_pred             CCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            765442    468899999   79999999999999999999999999999999999999999999999998777643

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.77  E-value=2.1e-17  Score=167.16  Aligned_cols=204  Identities=18%  Similarity=0.219  Sum_probs=145.5

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .++++.||.++++++|+++.+..+...+.....++++|+||||+|||++++.+|+.+.......... +           
T Consensus       171 ~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~-~-----------  238 (731)
T TIGR02639       171 DLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK-N-----------  238 (731)
T ss_pred             hHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc-C-----------
Confidence            3567889999999999999999888888887777899999999999999999999874332111000 0           


Q ss_pred             eeccccccccccceecCCCC------cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHH
Q 017844           82 IDLELTTLSSANHVELSPSD------AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REA  146 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~  146 (365)
                                ...+.+....      ........++++++.+..         ..+.|+||||+|.+.         .++
T Consensus       239 ----------~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~---------~~~~ILfiDEih~l~~~g~~~~~~~~~  299 (731)
T TIGR02639       239 ----------AKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK---------EPNAILFIDEIHTIVGAGATSGGSMDA  299 (731)
T ss_pred             ----------CeEEEecHHHHhhhccccchHHHHHHHHHHHHhc---------cCCeEEEEecHHHHhccCCCCCccHHH
Confidence                      0011111110      001111133444444322         134799999999884         234


Q ss_pred             HHHHHHHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHH
Q 017844          147 QHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRL  217 (365)
Q Consensus       147 ~~~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i  217 (365)
                      ++.|...++.  ..+.+|.+||..+     ..++++.+||+.+.+++|+.++..++|+.....    .++.++++++..+
T Consensus       300 ~~~L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~  377 (731)
T TIGR02639       300 SNLLKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAA  377 (731)
T ss_pred             HHHHHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHH
Confidence            6667777763  4677888888632     468899999999999999999999999977654    4678999999999


Q ss_pred             HHHcCC------CHHHHHHHHHHHHhc
Q 017844          218 AEKSNR------SLRRAILSFETCRVQ  238 (365)
Q Consensus       218 ~~~~~g------~lr~ai~~l~~~~~~  238 (365)
                      ++.+.+      -+++|+.+++.++..
T Consensus       378 ~~ls~ryi~~r~~P~kai~lld~a~a~  404 (731)
T TIGR02639       378 VELSARYINDRFLPDKAIDVIDEAGAS  404 (731)
T ss_pred             HHhhhcccccccCCHHHHHHHHHhhhh
Confidence            998754      378899999977654

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.2e-17  Score=146.04  Aligned_cols=180  Identities=21%  Similarity=0.324  Sum_probs=129.1

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      ++-.-.+++++-|-++.++.+++.+.-           | ..|. +|||||||||||.+|+++|++..+   ..+.+.+.
T Consensus       143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A---tFIrvvgS  219 (406)
T COG1222         143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA---TFIRVVGS  219 (406)
T ss_pred             ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc---eEEEeccH
Confidence            444445899999999999999998852           2 2233 999999999999999999986422   12222221


Q ss_pred             cceecCCCcceecccccccccccee-cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC--------
Q 017844           72 TWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--------  142 (365)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L--------  142 (365)
                      ++                     +. |..     .....+++++.....         ..+.|+||||+|.+        
T Consensus       220 El---------------------VqKYiG-----EGaRlVRelF~lAre---------kaPsIIFiDEIDAIg~kR~d~~  264 (406)
T COG1222         220 EL---------------------VQKYIG-----EGARLVRELFELARE---------KAPSIIFIDEIDAIGAKRFDSG  264 (406)
T ss_pred             HH---------------------HHHHhc-----cchHHHHHHHHHHhh---------cCCeEEEEechhhhhcccccCC
Confidence            11                     11 111     112246676665443         34589999999987        


Q ss_pred             ---CHHHHHHHHHHHhh-----hcCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844          143 ---SREAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (365)
Q Consensus       143 ---~~~~~~~Ll~~le~-----~~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~  211 (365)
                         +.+.|..++++|.+     +..++++|++||.++-++|++.+-.   ..|+|+.|+.+...+|++-+..+-++. ++
T Consensus       265 t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~d  343 (406)
T COG1222         265 TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DD  343 (406)
T ss_pred             CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cC
Confidence               34678888888875     4578999999999999999998754   379999999999999999888765543 23


Q ss_pred             HHHHHHHHHcCC
Q 017844          212 GFATRLAEKSNR  223 (365)
Q Consensus       212 ~~~~~i~~~~~g  223 (365)
                      -.++.+++.++|
T Consensus       344 vd~e~la~~~~g  355 (406)
T COG1222         344 VDLELLARLTEG  355 (406)
T ss_pred             cCHHHHHHhcCC
Confidence            347777877665

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.76  E-value=1.6e-16  Score=149.25  Aligned_cols=221  Identities=18%  Similarity=0.234  Sum_probs=132.8

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCC------Cccceecccc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPG------AEKVKVENKT   72 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~------~~~i~~~~~~   72 (365)
                      +...|.|.   +++|++..++.|..++..    +..++++|+||||+|||++++.+++.+....      ...++++|..
T Consensus         8 l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~   84 (365)
T TIGR02928         8 LEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI   84 (365)
T ss_pred             CCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence            34678885   678999888877777653    3444599999999999999999998774321      1223333322


Q ss_pred             ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH---HHH
Q 017844           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA---QHS  149 (365)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~---~~~  149 (365)
                      . .++..-...+. ..+..   ........+.........+.+.+..        .+++.|++|||+|.+....   ...
T Consensus        85 ~-~~~~~~~~~i~-~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vlvIDE~d~L~~~~~~~L~~  151 (365)
T TIGR02928        85 L-DTLYQVLVELA-NQLRG---SGEEVPTTGLSTSEVFRRLYKELNE--------RGDSLIIVLDEIDYLVGDDDDLLYQ  151 (365)
T ss_pred             C-CCHHHHHHHHH-HHHhh---cCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEECchhhhccCCcHHHHh
Confidence            1 00000000000 00000   0000000111111111222222211        2345799999999995322   233


Q ss_pred             HHHH--Hhhhc-CceeEEEEecCCC---cccHHHhccce--eEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH
Q 017844          150 LRRT--MEKYS-ASCRLILCCNSSS---KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAE  219 (365)
Q Consensus       150 Ll~~--le~~~-~~~~~Il~t~~~~---~l~~~l~sR~~--~i~~~~~~~~~~~~iL~~~~~~--~~~~i~~~~~~~i~~  219 (365)
                      |++.  ..+.+ .++.+|+++|.+.   .+.+.+.+|+.  .+.|++++.+++.++++.++..  .+..+++++++.+++
T Consensus       152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~  231 (365)
T TIGR02928       152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAA  231 (365)
T ss_pred             HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHH
Confidence            3333  12222 4678899998875   57788889984  7999999999999999998863  233578888777655


Q ss_pred             ---HcCCCHHHHHHHHHHHHhcC
Q 017844          220 ---KSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       220 ---~~~g~lr~ai~~l~~~~~~~  239 (365)
                         .+.||+|.++++++.++..+
T Consensus       232 ~~~~~~Gd~R~al~~l~~a~~~a  254 (365)
T TIGR02928       232 LAAQEHGDARKAIDLLRVAGEIA  254 (365)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHH
Confidence               45799999999999876543

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.75  E-value=5.8e-16  Score=146.90  Aligned_cols=211  Identities=15%  Similarity=0.198  Sum_probs=132.4

Q ss_pred             CccccCHHHHHHHHHHHH----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCC--CccceeccccceecCCCcceeccc
Q 017844           13 DQVIVHQDIAQNLKKLVT----EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~----~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      +.++|.+...+.+...+.    ++..++++|+||||+|||++++.+++.+....  ...+++++... .++..-...+  
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~-~~~~~~~~~i--  106 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID-RTRYAIFSEI--  106 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC-CCHHHHHHHH--
Confidence            457888887777776653    33445599999999999999999998775432  33344444322 0000000000  


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC----HHHHHHHHHHHhhhcC-ce
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLRRTMEKYSA-SC  161 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~----~~~~~~Ll~~le~~~~-~~  161 (365)
                        ..  ..........+.    ...+.+..+.....    ..+++.||+|||+|.+.    .+....|++.+++.+. ++
T Consensus       107 --~~--~l~~~~~~~~~~----~~~~~~~~~~~~l~----~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v  174 (394)
T PRK00411        107 --AR--QLFGHPPPSSGL----SFDELFDKIAEYLD----ERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARI  174 (394)
T ss_pred             --HH--HhcCCCCCCCCC----CHHHHHHHHHHHHH----hcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeE
Confidence              00  000000000111    12222222221111    12345799999999885    3445556666555433 56


Q ss_pred             eEEEEecCCC---cccHHHhccc--eeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHH
Q 017844          162 RLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS---NRSLRRAILS  231 (365)
Q Consensus       162 ~~Il~t~~~~---~l~~~l~sR~--~~i~~~~~~~~~~~~iL~~~~~~~--~~~i~~~~~~~i~~~~---~g~lr~ai~~  231 (365)
                      .+|++++...   .+.+.+.+|+  ..+.|++++.+++.++++.++...  ...+++++++.+++.+   .||+|.|+++
T Consensus       175 ~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~l  254 (394)
T PRK00411        175 GVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDL  254 (394)
T ss_pred             EEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHH
Confidence            7888888764   4667788887  478999999999999999988643  3368899999999877   8999999999


Q ss_pred             HHHHHhc
Q 017844          232 FETCRVQ  238 (365)
Q Consensus       232 l~~~~~~  238 (365)
                      +..++..
T Consensus       255 l~~a~~~  261 (394)
T PRK00411        255 LRRAGLI  261 (394)
T ss_pred             HHHHHHH
Confidence            9876544

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.74  E-value=5.9e-17  Score=165.06  Aligned_cols=205  Identities=17%  Similarity=0.237  Sum_probs=144.7

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~   82 (365)
                      .+++.||.++++++|+++.++.+...+.++..++.+|+||||||||++++.+++.+...... ..+.+            
T Consensus       177 L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~-~~l~~------------  243 (852)
T TIGR03345       177 LTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP-PALRN------------  243 (852)
T ss_pred             HHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCC-ccccC------------
Confidence            45678999999999999999988888888887889999999999999999999987432211 00000            


Q ss_pred             eccccccccccceecCCC------CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------HHHH
Q 017844           83 DLELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQH  148 (365)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------~~~~  148 (365)
                               ...+.+...      .....-...++++++.+..        .+...|+||||+|.+..        ++.+
T Consensus       244 ---------~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~--------~~~~~ILfIDEih~l~~~g~~~~~~d~~n  306 (852)
T TIGR03345       244 ---------VRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA--------SPQPIILFIDEAHTLIGAGGQAGQGDAAN  306 (852)
T ss_pred             ---------CeEEEeehhhhhcccccchHHHHHHHHHHHHHHh--------cCCCeEEEEeChHHhccCCCccccccHHH
Confidence                     111111111      1111111234455555432        12347999999999853        2234


Q ss_pred             HHHHHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 017844          149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE  219 (365)
Q Consensus       149 ~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~  219 (365)
                      .|...++.  +...+|.+|+..+     ..++++.+||+.|.+++|+.++...+|+.....    .++.++++++..++.
T Consensus       307 ~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~  384 (852)
T TIGR03345       307 LLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVE  384 (852)
T ss_pred             HhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHH
Confidence            56666653  4677888887642     478999999999999999999999997655542    468899999999999


Q ss_pred             HcCC------CHHHHHHHHHHHHhcC
Q 017844          220 KSNR------SLRRAILSFETCRVQQ  239 (365)
Q Consensus       220 ~~~g------~lr~ai~~l~~~~~~~  239 (365)
                      .+.+      -+.+|+.+|+.++...
T Consensus       385 ls~ryi~~r~LPDKAIdlldea~a~~  410 (852)
T TIGR03345       385 LSHRYIPGRQLPDKAVSLLDTACARV  410 (852)
T ss_pred             HcccccccccCccHHHHHHHHHHHHH
Confidence            8864      3578999999876543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.70  E-value=5e-16  Score=150.90  Aligned_cols=193  Identities=19%  Similarity=0.290  Sum_probs=126.2

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~-----------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~   72 (365)
                      +.....+|++++|+++++..++.++.           ....+. ++|+||||||||++++++|++...+.   +.+++..
T Consensus        47 ~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~---~~i~~~~  123 (495)
T TIGR01241        47 EEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF---FSISGSD  123 (495)
T ss_pred             CCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe---eeccHHH
Confidence            34445689999999999887777654           133333 99999999999999999999753221   1111111


Q ss_pred             ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------
Q 017844           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------  144 (365)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------  144 (365)
                      +                     .....   + .....+++.+.....         ..+.|++|||+|.+..        
T Consensus       124 ~---------------------~~~~~---g-~~~~~l~~~f~~a~~---------~~p~Il~iDEid~l~~~r~~~~~~  169 (495)
T TIGR01241       124 F---------------------VEMFV---G-VGASRVRDLFEQAKK---------NAPCIIFIDEIDAVGRQRGAGLGG  169 (495)
T ss_pred             H---------------------HHHHh---c-ccHHHHHHHHHHHHh---------cCCCEEEEechhhhhhccccCcCC
Confidence            1                     00000   0 011234455544332         2347999999988742        


Q ss_pred             ------HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 017844          145 ------EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (365)
Q Consensus       145 ------~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~  213 (365)
                            ...+.|+..|+...  .++.+|.+||.++.+++++++  |+ ..+.++.|+.+++.++++..+...+.. ++..
T Consensus       170 ~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~  248 (495)
T TIGR01241       170 GNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVD  248 (495)
T ss_pred             ccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchh
Confidence                  23345666665432  346788888888999999987  55 379999999999999999888765443 3456


Q ss_pred             HHHHHHHcCC-CHHHHHHHHHHH
Q 017844          214 ATRLAEKSNR-SLRRAILSFETC  235 (365)
Q Consensus       214 ~~~i~~~~~g-~lr~ai~~l~~~  235 (365)
                      +..+++.+.| +.++..++++.+
T Consensus       249 l~~la~~t~G~sgadl~~l~~eA  271 (495)
T TIGR01241       249 LKAVARRTPGFSGADLANLLNEA  271 (495)
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHH
Confidence            7788887766 445555555544

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.69  E-value=5.4e-16  Score=145.97  Aligned_cols=196  Identities=17%  Similarity=0.252  Sum_probs=125.0

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCcccee
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV   68 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~   68 (365)
                      ++++++.+.+|+++.|.+..++.++.++..           | ..+ +++|+||||||||++|+++|+++..+   .+.+
T Consensus       172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~---fi~V  248 (438)
T PTZ00361        172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT---FLRV  248 (438)
T ss_pred             cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC---EEEE
Confidence            578888889999999999999988887741           1 222 39999999999999999999976321   1111


Q ss_pred             ccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----
Q 017844           69 ENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----  143 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----  143 (365)
                      .+..+                     +.    .........+++++.....         ..+.|++|||+|.+.     
T Consensus       249 ~~seL---------------------~~----k~~Ge~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~kR~~  294 (438)
T PTZ00361        249 VGSEL---------------------IQ----KYLGDGPKLVRELFRVAEE---------NAPSIVFIDEIDAIGTKRYD  294 (438)
T ss_pred             ecchh---------------------hh----hhcchHHHHHHHHHHHHHh---------CCCcEEeHHHHHHHhccCCC
Confidence            11110                     00    0001111224444443322         245799999998663     


Q ss_pred             ------HHHHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCC
Q 017844          144 ------REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQL  209 (365)
Q Consensus       144 ------~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i  209 (365)
                            .+.+..++.++.+.     ..++.+|++||.++.+++++.+  |+. .|.|++|+.++..++++.++.+..+. 
T Consensus       295 ~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-  373 (438)
T PTZ00361        295 ATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-  373 (438)
T ss_pred             CCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-
Confidence                  22344455555432     3467899999999999999875  664 89999999999999999887655442 


Q ss_pred             CHHHHHHHHHHcCC-CHHHHHHHHHHH
Q 017844          210 PSGFATRLAEKSNR-SLRRAILSFETC  235 (365)
Q Consensus       210 ~~~~~~~i~~~~~g-~lr~ai~~l~~~  235 (365)
                      ++..++.++..+.| +..+..+++..+
T Consensus       374 ~dvdl~~la~~t~g~sgAdI~~i~~eA  400 (438)
T PTZ00361        374 EDVDLEEFIMAKDELSGADIKAICTEA  400 (438)
T ss_pred             cCcCHHHHHHhcCCCCHHHHHHHHHHH
Confidence            12235556654443 333333444433

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=5.5e-16  Score=146.99  Aligned_cols=193  Identities=19%  Similarity=0.241  Sum_probs=134.3

Q ss_pred             CCCCCCccccCHHHHHHHHHHHH-----------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~   74 (365)
                      ...+|+++-|+++++..+++.+.           -| ..|. +|||||||||||++|+++|.+-.+           +| 
T Consensus       429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~-----------nF-  496 (693)
T KOG0730|consen  429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM-----------NF-  496 (693)
T ss_pred             CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-----------Ce-
Confidence            34689999999999999998774           13 2333 999999999999999999996422           11 


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH---------
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE---------  145 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~---------  145 (365)
                                  -..+.+..+.    .+.......+++.++...+..         +.|+++||+|.+..+         
T Consensus       497 ------------lsvkgpEL~s----k~vGeSEr~ir~iF~kAR~~a---------P~IiFfDEiDsi~~~R~g~~~~v~  551 (693)
T KOG0730|consen  497 ------------LSVKGPELFS----KYVGESERAIREVFRKARQVA---------PCIIFFDEIDALAGSRGGSSSGVT  551 (693)
T ss_pred             ------------eeccCHHHHH----HhcCchHHHHHHHHHHHhhcC---------CeEEehhhHHhHhhccCCCccchH
Confidence                        1111111111    111122335667776655433         379999999987432         


Q ss_pred             --HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 017844          146 --AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRL  217 (365)
Q Consensus       146 --~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~-~~~~i  217 (365)
                        ..+.||.-|+..  ..++.+|.+||.++.+++++.+  |+ ..++++.|+.+...++++..+++-  .++++ .++.|
T Consensus       552 ~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~vdl~~L  629 (693)
T KOG0730|consen  552 DRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM--PFSEDVDLEEL  629 (693)
T ss_pred             HHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC--CCCccccHHHH
Confidence              234555555533  3567888889999999999999  77 489999999999999999887654  44455 68899


Q ss_pred             HHHcCC-CHHHHHHHHHHHHhcC
Q 017844          218 AEKSNR-SLRRAILSFETCRVQQ  239 (365)
Q Consensus       218 ~~~~~g-~lr~ai~~l~~~~~~~  239 (365)
                      ++.++| +-.+...+++.++..+
T Consensus       630 a~~T~g~SGAel~~lCq~A~~~a  652 (693)
T KOG0730|consen  630 AQATEGYSGAEIVAVCQEAALLA  652 (693)
T ss_pred             HHHhccCChHHHHHHHHHHHHHH
Confidence            997766 5566667777665543

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.69  E-value=9.9e-16  Score=137.44  Aligned_cols=105  Identities=29%  Similarity=0.309  Sum_probs=80.7

Q ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCC------------CcccHHHhccceeEEecCCCHHHHHHHH
Q 017844          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS------------SKVTEAIRSRCLNIRINSPTEEQIVKVL  198 (365)
Q Consensus       131 ~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~------------~~l~~~l~sR~~~i~~~~~~~~~~~~iL  198 (365)
                      +.|+||||+|+|+.+++..|.+.+|..- ...+|++||..            ..++..+.+||..++..|++.+++.+++
T Consensus       279 pGVLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il  357 (398)
T PF06068_consen  279 PGVLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL  357 (398)
T ss_dssp             E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred             cceEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence            4699999999999999999999999643 34577777743            2478899999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHH
Q 017844          199 EFIAKKEGLQLPSGFATRLAEK-SNRSLRRAILSFETCR  236 (365)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~i~~~-~~g~lr~ai~~l~~~~  236 (365)
                      +-+|+.+++.+++++++.+.+. .+.++|.|++++..+.
T Consensus       358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~  396 (398)
T PF06068_consen  358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS  396 (398)
T ss_dssp             HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred             HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence            9999999999999999999995 4689999999997654

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.69  E-value=3.1e-15  Score=132.19  Aligned_cols=107  Identities=24%  Similarity=0.287  Sum_probs=92.6

Q ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCC------------CcccHHHhccceeEEecCCCHHHHHHHH
Q 017844          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS------------SKVTEAIRSRCLNIRINSPTEEQIVKVL  198 (365)
Q Consensus       131 ~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~------------~~l~~~l~sR~~~i~~~~~~~~~~~~iL  198 (365)
                      +.|+||||+|+|+-+++..|.+.||+.- ...+|++||.-            ..++..+.+|..++.-.|++.+++.+++
T Consensus       292 pGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi  370 (450)
T COG1224         292 PGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII  370 (450)
T ss_pred             cceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence            5699999999999999999999999753 23567777742            3588899999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 017844          199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ  238 (365)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~  238 (365)
                      +.+++.+++.++++++++++... ..++|.|+++|.-+...
T Consensus       371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~ii  411 (450)
T COG1224         371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASII  411 (450)
T ss_pred             HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHH
Confidence            99999999999999999999964 57999999999854433

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=6.7e-15  Score=136.07  Aligned_cols=215  Identities=16%  Similarity=0.204  Sum_probs=138.4

Q ss_pred             ccCCCCCCccccCHHHHHHHHH----HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCc--cceeccccceecCCC
Q 017844            6 KYRPKTLDQVIVHQDIAQNLKK----LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGS   79 (365)
Q Consensus         6 k~rP~~~~~iig~~~~~~~l~~----~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~--~i~~~~~~~~~~~~~   79 (365)
                      -|-|..   +.+.+..++.+..    ++.++...+++++||+|||||++++.+++++......  .++++|..+ .+|..
T Consensus        13 ~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~-~t~~~   88 (366)
T COG1474          13 DYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL-RTPYQ   88 (366)
T ss_pred             CCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC-CCHHH
Confidence            455544   6666666655554    4445555569999999999999999999998776443  477777655 22211


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh--
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY--  157 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~--  157 (365)
                      -...+    +.   .+. .....+...    .+.++.+.....    .....-|+++||+|.|.....+.|..++..+  
T Consensus        89 i~~~i----~~---~~~-~~p~~g~~~----~~~~~~l~~~~~----~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~  152 (366)
T COG1474          89 VLSKI----LN---KLG-KVPLTGDSS----LEILKRLYDNLS----KKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE  152 (366)
T ss_pred             HHHHH----HH---HcC-CCCCCCCch----HHHHHHHHHHHH----hcCCeEEEEEcchhhhccccchHHHHHHhhccc
Confidence            00000    00   000 111112211    122222222211    1345689999999999766545555555433  


Q ss_pred             -cCceeEEEEecCCC---cccHHHhccce--eEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH---HcCCCHH
Q 017844          158 -SASCRLILCCNSSS---KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAE---KSNRSLR  226 (365)
Q Consensus       158 -~~~~~~Il~t~~~~---~l~~~l~sR~~--~i~~~~~~~~~~~~iL~~~~~~--~~~~i~~~~~~~i~~---~~~g~lr  226 (365)
                       ..++.+|+++|+..   .+.+.++|++.  .|.|+|++.+|+..+|..+++.  ....+++++++.++.   ..+||+|
T Consensus       153 ~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR  232 (366)
T COG1474         153 NKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDAR  232 (366)
T ss_pred             cceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHH
Confidence             23356777777764   57788888874  6889999999999999998864  234688888888875   4578999


Q ss_pred             HHHHHHHHHHhcCC
Q 017844          227 RAILSFETCRVQQY  240 (365)
Q Consensus       227 ~ai~~l~~~~~~~~  240 (365)
                      .|+.+|..++..+.
T Consensus       233 ~aidilr~A~eiAe  246 (366)
T COG1474         233 KAIDILRRAGEIAE  246 (366)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998776654

>CHL00176 ftsH cell division protein; Validated

Probab=99.68  E-value=4.5e-15  Score=146.24  Aligned_cols=190  Identities=18%  Similarity=0.309  Sum_probs=125.5

Q ss_pred             CCCCccccCHHHHHHHHHHHH---c--------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844           10 KTLDQVIVHQDIAQNLKKLVT---E--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~---~--------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      .+|++++|.+++++.+...+.   .        ...+ +++|+||||||||++|+++|++...+   .+.+++..+    
T Consensus       180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p---~i~is~s~f----  252 (638)
T CHL00176        180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP---FFSISGSEF----  252 (638)
T ss_pred             CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eeeccHHHH----
Confidence            579999999988887777652   1        1223 39999999999999999999976322   112222111    


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HHH
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------REA  146 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~~  146 (365)
                                       .+..   .+ .....+++.+.....         ..+.|++|||+|.+.           ...
T Consensus       253 -----------------~~~~---~g-~~~~~vr~lF~~A~~---------~~P~ILfIDEID~l~~~r~~~~~~~~~e~  302 (638)
T CHL00176        253 -----------------VEMF---VG-VGAARVRDLFKKAKE---------NSPCIVFIDEIDAVGRQRGAGIGGGNDER  302 (638)
T ss_pred             -----------------HHHh---hh-hhHHHHHHHHHHHhc---------CCCcEEEEecchhhhhcccCCCCCCcHHH
Confidence                             0000   00 011124444444322         345799999999873           222


Q ss_pred             H---HHHHHHHhhh--cCceeEEEEecCCCcccHHHhcc--c-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017844          147 Q---HSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (365)
Q Consensus       147 ~---~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~  218 (365)
                      +   +.|+..++..  ..++.+|.+||+++.++++++++  + ..+.|+.|+.+++.++++.++.+... .++..+..++
T Consensus       303 ~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA  381 (638)
T CHL00176        303 EQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIA  381 (638)
T ss_pred             HHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHH
Confidence            3   3344444433  23567888888888899999874  4 48999999999999999998877433 3466788999


Q ss_pred             HHcCC-CHHHHHHHHHHHHh
Q 017844          219 EKSNR-SLRRAILSFETCRV  237 (365)
Q Consensus       219 ~~~~g-~lr~ai~~l~~~~~  237 (365)
                      +.+.| +.+++.++++.++.
T Consensus       382 ~~t~G~sgaDL~~lvneAal  401 (638)
T CHL00176        382 RRTPGFSGADLANLLNEAAI  401 (638)
T ss_pred             hcCCCCCHHHHHHHHHHHHH
Confidence            98887 66666666665544

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.67  E-value=5.5e-15  Score=138.33  Aligned_cols=193  Identities=20%  Similarity=0.291  Sum_probs=124.2

Q ss_pred             CCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~   74 (365)
                      ...+|+++.|.+.+++.++..+..           | ..| .++|+||||||||++++++|+++..+.   +.+.+..+ 
T Consensus       140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~~s~l-  215 (398)
T PTZ00454        140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVVGSEF-  215 (398)
T ss_pred             CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEehHHH-
Confidence            445899999999999888887631           2 122 399999999999999999999653211   11111000 


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------  143 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------  143 (365)
                                          ..    .........+++.+.....         ..+.|++|||+|.+.           
T Consensus       216 --------------------~~----k~~ge~~~~lr~lf~~A~~---------~~P~ILfIDEID~i~~~r~~~~~~~d  262 (398)
T PTZ00454        216 --------------------VQ----KYLGEGPRMVRDVFRLARE---------NAPSIIFIDEVDSIATKRFDAQTGAD  262 (398)
T ss_pred             --------------------HH----HhcchhHHHHHHHHHHHHh---------cCCeEEEEECHhhhccccccccCCcc
Confidence                                00    0000111234444443322         345799999998763           


Q ss_pred             HHHHHHHHHHHhh---h--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017844          144 REAQHSLRRTMEK---Y--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (365)
Q Consensus       144 ~~~~~~Ll~~le~---~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~  215 (365)
                      ...+..+..++..   .  ..++.+|++||+++.+++++.+  |+. .|.|+.|+.++...+++.++.+.++. ++-.+.
T Consensus       263 ~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~  341 (398)
T PTZ00454        263 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLE  341 (398)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHH
Confidence            2333444444433   2  2467899999999999999886  663 79999999999999999888766554 233466


Q ss_pred             HHHHHcCC-CHHHHHHHHHHHHhc
Q 017844          216 RLAEKSNR-SLRRAILSFETCRVQ  238 (365)
Q Consensus       216 ~i~~~~~g-~lr~ai~~l~~~~~~  238 (365)
                      .++..+.| +.++..++++.+...
T Consensus       342 ~la~~t~g~sgaDI~~l~~eA~~~  365 (398)
T PTZ00454        342 DFVSRPEKISAADIAAICQEAGMQ  365 (398)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHH
Confidence            77776655 555555666555443

>TIGR00763 lon ATP-dependent protease La

Probab=99.66  E-value=1.6e-15  Score=154.29  Aligned_cols=194  Identities=15%  Similarity=0.187  Sum_probs=124.4

Q ss_pred             ccccCHHHHHHHHHHHHc------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844           14 QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      +++|++++++.+..++..      .+.++++|+||||||||++|+++|+.+..+. ..+...+  .        .+.  .
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~-~~i~~~~--~--------~~~--~  387 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF-VRFSLGG--V--------RDE--A  387 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe-EEEeCCC--c--------ccH--H
Confidence            478999999998886642      2334599999999999999999999874321 1111110  0        000  0


Q ss_pred             ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH----HHHHHHHHhhh------
Q 017844           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA----QHSLRRTMEKY------  157 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~----~~~Ll~~le~~------  157 (365)
                      .+.. ..-.+.    +...+ .+.+.+...          .....|++|||+|.+....    .++|++.|+..      
T Consensus       388 ~i~g-~~~~~~----g~~~g-~i~~~l~~~----------~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~  451 (775)
T TIGR00763       388 EIRG-HRRTYV----GAMPG-RIIQGLKKA----------KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFS  451 (775)
T ss_pred             HHcC-CCCcee----CCCCc-hHHHHHHHh----------CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccc
Confidence            0000 000001    10011 122222221          1123599999999996532    47788888631      


Q ss_pred             ---------cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHH
Q 017844          158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-----KE-----GLQLPSGFATRLA  218 (365)
Q Consensus       158 ---------~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~-----~~-----~~~i~~~~~~~i~  218 (365)
                               ..++.||++||....+++++++||.++.|++++.++...+++..+.     ..     ++.++++++..|+
T Consensus       452 d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~  531 (775)
T TIGR00763       452 DHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLI  531 (775)
T ss_pred             cccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHH
Confidence                     1357788899998899999999999999999999999999877552     22     4578999999999


Q ss_pred             HHcC--CCHHHHHHHHHHHH
Q 017844          219 EKSN--RSLRRAILSFETCR  236 (365)
Q Consensus       219 ~~~~--g~lr~ai~~l~~~~  236 (365)
                      +...  ..+|.....++.++
T Consensus       532 ~~~~~e~g~R~l~r~i~~~~  551 (775)
T TIGR00763       532 KYYTREAGVRNLERQIEKIC  551 (775)
T ss_pred             HhcChhcCChHHHHHHHHHH
Confidence            8543  35566555555444

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.66  E-value=5e-15  Score=141.55  Aligned_cols=177  Identities=16%  Similarity=0.135  Sum_probs=119.1

Q ss_pred             CCCCccccCHHHHHHHHHHHH--------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844           10 KTLDQVIVHQDIAQNLKKLVT--------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~--------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      .+|+++.|.+.+++.+.....        .| ..|. +||+||||||||++|+++|+++..+-   +.+++..+      
T Consensus       225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~~~~l------  295 (489)
T CHL00195        225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLDVGKL------  295 (489)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEEhHHh------
Confidence            579999999888877765321        12 2233 99999999999999999999763221   11111000      


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------------HHH
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------EAQ  147 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------------~~~  147 (365)
                                     +   . .........+++.+......         .+.|++|||+|.+..            ...
T Consensus       296 ---------------~---~-~~vGese~~l~~~f~~A~~~---------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl  347 (489)
T CHL00195        296 ---------------F---G-GIVGESESRMRQMIRIAEAL---------SPCILWIDEIDKAFSNSESKGDSGTTNRVL  347 (489)
T ss_pred             ---------------c---c-cccChHHHHHHHHHHHHHhc---------CCcEEEehhhhhhhccccCCCCchHHHHHH
Confidence                           0   0 00111122355555543322         347999999986532            123


Q ss_pred             HHHHHHHhhhcCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCC
Q 017844          148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRLAEKSNR  223 (365)
Q Consensus       148 ~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~-i~~~~~~~i~~~~~g  223 (365)
                      ..|+..|.+....+.+|.+||+++.+++++.+  |+. .+.++.|+.+++.++++.++.+.+.. .++..++.+++.+.|
T Consensus       348 ~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~G  427 (489)
T CHL00195        348 ATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNK  427 (489)
T ss_pred             HHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCC
Confidence            45667777666667788899999999999976  774 79999999999999999988875432 345668888887765

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.65  E-value=7.3e-15  Score=149.85  Aligned_cols=199  Identities=16%  Similarity=0.293  Sum_probs=137.0

Q ss_pred             CccccCHHHHHHHHHHHHc-------CCCC--eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           13 DQVIVHQDIAQNLKKLVTE-------QDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~-------~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      +.++||+.++..+...+..       ...|  .++|+||+|+|||.+|++++..++......+.+++..| ..+.     
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~-~~~~-----  639 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEF-QEAH-----  639 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHh-hhhh-----
Confidence            3578999999988888743       1122  28999999999999999999988765444445554433 1000     


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----  158 (365)
                            +....+.-.+...+......+.+   .+.         ..++.||++||++.++++.++.|++++++..     
T Consensus       640 ------~~~~l~g~~~gyvg~~~~g~L~~---~v~---------~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~  701 (852)
T TIGR03345       640 ------TVSRLKGSPPGYVGYGEGGVLTE---AVR---------RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGE  701 (852)
T ss_pred             ------hhccccCCCCCcccccccchHHH---HHH---------hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCC
Confidence                  00011111111112111111222   222         1245799999999999999999999998753     


Q ss_pred             ------CceeEEEEecCCC-----------------------------cccHHHhccceeEEecCCCHHHHHHHHHHHHH
Q 017844          159 ------ASCRLILCCNSSS-----------------------------KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK  203 (365)
Q Consensus       159 ------~~~~~Il~t~~~~-----------------------------~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~  203 (365)
                            .++.||++||-..                             .+.|++.+||.++.|.+++.+++.+++...+.
T Consensus       702 Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~  781 (852)
T TIGR03345       702 GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLD  781 (852)
T ss_pred             CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHH
Confidence                  5677888877311                             15688899999999999999999999877654


Q ss_pred             H-------c-CC--CCCHHHHHHHHHHcCC---CHHHHHHHHHHH
Q 017844          204 K-------E-GL--QLPSGFATRLAEKSNR---SLRRAILSFETC  235 (365)
Q Consensus       204 ~-------~-~~--~i~~~~~~~i~~~~~g---~lr~ai~~l~~~  235 (365)
                      .       . |+  .++++++++|++.+.+   +.|.+.+.++..
T Consensus       782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~  826 (852)
T TIGR03345       782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT  826 (852)
T ss_pred             HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence            3       1 43  6899999999998876   789888888764

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=6.6e-15  Score=138.17  Aligned_cols=184  Identities=18%  Similarity=0.272  Sum_probs=127.7

Q ss_pred             CCCccccCHHHHHHHHHHHHc----------CCCCe--EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844           11 TLDQVIVHQDIAQNLKKLVTE----------QDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~----------~~~~~--lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      +|.++-|.+..+..|...+..          |-.|+  +||+||||||||.+|+++|+++.-|           |     
T Consensus       188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-----------f-----  251 (802)
T KOG0733|consen  188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-----------F-----  251 (802)
T ss_pred             chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-----------e-----
Confidence            489999999888887776631          32233  9999999999999999999987221           1     


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-----------HH
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------AQ  147 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-----------~~  147 (365)
                              -.++.+..+   . .........++++++......         +.|+||||+|.+.+.           ..
T Consensus       252 --------~~isApeiv---S-GvSGESEkkiRelF~~A~~~a---------PcivFiDeIDAI~pkRe~aqreMErRiV  310 (802)
T KOG0733|consen  252 --------LSISAPEIV---S-GVSGESEKKIRELFDQAKSNA---------PCIVFIDEIDAITPKREEAQREMERRIV  310 (802)
T ss_pred             --------Eeecchhhh---c-ccCcccHHHHHHHHHHHhccC---------CeEEEeecccccccchhhHHHHHHHHHH
Confidence                    111111111   1 111223345777777765443         479999999999753           22


Q ss_pred             HHHHHHHhhhc------CceeEEEEecCCCcccHHHhcc--c-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017844          148 HSLRRTMEKYS------ASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (365)
Q Consensus       148 ~~Ll~~le~~~------~~~~~Il~t~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~  218 (365)
                      ..|+..|++..      ..+.+|.+||.++.+++++++-  + ..|.+.-|+..+..+||+.+|+...+.- +-.+..||
T Consensus       311 aQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA  389 (802)
T KOG0733|consen  311 AQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLA  389 (802)
T ss_pred             HHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHH
Confidence            35777777653      3477888999999999999874  4 3799999999999999999998554432 33477888


Q ss_pred             HHcCCCHHHHHHHH
Q 017844          219 EKSNRSLRRAILSF  232 (365)
Q Consensus       219 ~~~~g~lr~ai~~l  232 (365)
                      +.+.|-++.=+..|
T Consensus       390 ~lTPGfVGADL~AL  403 (802)
T KOG0733|consen  390 KLTPGFVGADLMAL  403 (802)
T ss_pred             hcCCCccchhHHHH
Confidence            88888665544433

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.65  E-value=6.4e-15  Score=138.49  Aligned_cols=189  Identities=21%  Similarity=0.283  Sum_probs=121.1

Q ss_pred             CCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      .+|+++.|.+..++.++..+..           | ..| +++|+||||||||++|+++|+++..+   .+.+.+..+   
T Consensus       128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~---~i~v~~~~l---  201 (389)
T PRK03992        128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT---FIRVVGSEL---  201 (389)
T ss_pred             CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC---EEEeehHHH---
Confidence            4788999999999888887631           1 223 39999999999999999999976321   111111111   


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HH
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE  145 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~  145 (365)
                                        ..    .........+++.+.....         ..+.||+|||+|.+.           .+
T Consensus       202 ------------------~~----~~~g~~~~~i~~~f~~a~~---------~~p~IlfiDEiD~l~~~r~~~~~~~~~~  250 (389)
T PRK03992        202 ------------------VQ----KFIGEGARLVRELFELARE---------KAPSIIFIDEIDAIAAKRTDSGTSGDRE  250 (389)
T ss_pred             ------------------hH----hhccchHHHHHHHHHHHHh---------cCCeEEEEechhhhhcccccCCCCccHH
Confidence                              00    0000111123444433322         234799999999872           34


Q ss_pred             HHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844          146 AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (365)
Q Consensus       146 ~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i  217 (365)
                      .+..+..++.+.     ..++.+|++||.++.+++++.+  |+. .++|++|+.++..++++.++....+. .+..+..+
T Consensus       251 ~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~l  329 (389)
T PRK03992        251 VQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEEL  329 (389)
T ss_pred             HHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHH
Confidence            455566665432     2467899999999999999986  664 79999999999999999887654432 12346777


Q ss_pred             HHHcCC-CHHHHHHHHHHHH
Q 017844          218 AEKSNR-SLRRAILSFETCR  236 (365)
Q Consensus       218 ~~~~~g-~lr~ai~~l~~~~  236 (365)
                      ++.+.| +.++...++..++
T Consensus       330 a~~t~g~sgadl~~l~~eA~  349 (389)
T PRK03992        330 AELTEGASGADLKAICTEAG  349 (389)
T ss_pred             HHHcCCCCHHHHHHHHHHHH
Confidence            777665 3344444444433

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.64  E-value=9.3e-15  Score=139.51  Aligned_cols=185  Identities=15%  Similarity=0.248  Sum_probs=116.0

Q ss_pred             ccccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus         4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      .+++.+.+|+++.|.+..++.++..+..           | ..+. ++||||||||||++++++++++..+...... ..
T Consensus       173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~-~~  251 (512)
T TIGR03689       173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETG-DK  251 (512)
T ss_pred             eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccC-Cc
Confidence            3667788999999999999888887631           2 2233 9999999999999999999987433111000 00


Q ss_pred             ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-----
Q 017844           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----  145 (365)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-----  145 (365)
                      ..|        ..+     .....+.    .........++.++.......     ..+.+.|++|||+|.+...     
T Consensus       252 ~~f--------l~v-----~~~eLl~----kyvGete~~ir~iF~~Ar~~a-----~~g~p~IIfIDEiD~L~~~R~~~~  309 (512)
T TIGR03689       252 SYF--------LNI-----KGPELLN----KYVGETERQIRLIFQRAREKA-----SDGRPVIVFFDEMDSIFRTRGSGV  309 (512)
T ss_pred             eeE--------Eec-----cchhhcc----cccchHHHHHHHHHHHHHHHh-----hcCCCceEEEehhhhhhcccCCCc
Confidence            000        000     0000000    000011112344444333221     1235679999999977321     


Q ss_pred             -------HHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844          146 -------AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       146 -------~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~  212 (365)
                             ..+.|+..|+...  .++.+|.+||+++.+++++++  |+. .|+|++|+.++..++++.++.. .+.++++
T Consensus       310 s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~  387 (512)
T TIGR03689       310 SSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDAD  387 (512)
T ss_pred             cchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHH
Confidence                   2345666666433  467888999999999999998  774 6999999999999999988754 3444333

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.64  E-value=4.1e-15  Score=152.66  Aligned_cols=205  Identities=18%  Similarity=0.275  Sum_probs=143.2

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~   82 (365)
                      ++++.||..++.++|+++.++.+...+.++..++.+|+||||+|||++++.++..+...... ....+..          
T Consensus       163 l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p-~~l~~~~----------  231 (852)
T TIGR03346       163 LTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVP-ESLKNKR----------  231 (852)
T ss_pred             HHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCc-hhhcCCe----------
Confidence            56788999999999999999999888877777779999999999999999999976432110 0000100          


Q ss_pred             eccccccccccceecCCC------CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------HHHH
Q 017844           83 DLELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQH  148 (365)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------~~~~  148 (365)
                                 .+.+...      .........++.+++.+..        ..++.|+||||+|.+..        ++.+
T Consensus       232 -----------~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~--------~~~~~ILfIDEih~l~~~g~~~~~~d~~~  292 (852)
T TIGR03346       232 -----------LLALDMGALIAGAKYRGEFEERLKAVLNEVTK--------SEGQIILFIDELHTLVGAGKAEGAMDAGN  292 (852)
T ss_pred             -----------EEEeeHHHHhhcchhhhhHHHHHHHHHHHHHh--------cCCCeEEEeccHHHhhcCCCCcchhHHHH
Confidence                       0111100      0111111134444544432        12357999999998852        2445


Q ss_pred             HHHHHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 017844          149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE  219 (365)
Q Consensus       149 ~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~  219 (365)
                      .|...++  .....+|.+|+..+     ..++++.+||+.+.++.|+.++...+|+....+    .++.++++++..++.
T Consensus       293 ~Lk~~l~--~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~  370 (852)
T TIGR03346       293 MLKPALA--RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAAT  370 (852)
T ss_pred             Hhchhhh--cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHH
Confidence            5555543  34577888887653     468999999999999999999999999876554    467889999999998


Q ss_pred             HcCC---C---HHHHHHHHHHHHhcC
Q 017844          220 KSNR---S---LRRAILSFETCRVQQ  239 (365)
Q Consensus       220 ~~~g---~---lr~ai~~l~~~~~~~  239 (365)
                      .+.+   +   +.+|+.+|+.+++..
T Consensus       371 ls~~yi~~r~lPdkAidlld~a~a~~  396 (852)
T TIGR03346       371 LSHRYITDRFLPDKAIDLIDEAAARI  396 (852)
T ss_pred             hccccccccCCchHHHHHHHHHHHHH
Confidence            7754   3   778999999877653

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=4.5e-15  Score=137.27  Aligned_cols=190  Identities=17%  Similarity=0.230  Sum_probs=126.4

Q ss_pred             CCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844           10 KTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~-----------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      .+|+|+-|-+++++.|.+.++           +|+.|. +||+||||+|||.|||++|++..   ...++..|.+|    
T Consensus       301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~---VPFF~~sGSEF----  373 (752)
T KOG0734|consen  301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG---VPFFYASGSEF----  373 (752)
T ss_pred             cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC---CCeEeccccch----
Confidence            469999999999988887764           477777 99999999999999999999752   22222233222    


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HHH
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------REA  146 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~~  146 (365)
                                       -++..   | .....+++++......         .+.||+|||+|.+.           ...
T Consensus       374 -----------------dEm~V---G-vGArRVRdLF~aAk~~---------APcIIFIDEiDavG~kR~~~~~~y~kqT  423 (752)
T KOG0734|consen  374 -----------------DEMFV---G-VGARRVRDLFAAAKAR---------APCIIFIDEIDAVGGKRNPSDQHYAKQT  423 (752)
T ss_pred             -----------------hhhhh---c-ccHHHHHHHHHHHHhc---------CCeEEEEechhhhcccCCccHHHHHHHH
Confidence                             11100   1 1122477777665443         34799999999873           123


Q ss_pred             HHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 017844          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEK  220 (365)
Q Consensus       147 ~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~-~~~~~~i~~~  220 (365)
                      .|.||--|+.+..  .+.+|.+||-++.+++++.+  |+ ..|.++.|+..-..+||+.++.+-  ..+ +-....||+-
T Consensus       424 lNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARG  501 (752)
T KOG0734|consen  424 LNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARG  501 (752)
T ss_pred             HHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccC
Confidence            3455555554443  46677788889999999977  44 379999999999999999888653  222 2235666775


Q ss_pred             cCC-CHHHHHHHHHHHHhc
Q 017844          221 SNR-SLRRAILSFETCRVQ  238 (365)
Q Consensus       221 ~~g-~lr~ai~~l~~~~~~  238 (365)
                      +.| +--+.-|++++++.+
T Consensus       502 T~GFsGAdLaNlVNqAAlk  520 (752)
T KOG0734|consen  502 TPGFSGADLANLVNQAALK  520 (752)
T ss_pred             CCCCchHHHHHHHHHHHHH
Confidence            554 333444555555444

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.63  E-value=3e-14  Score=142.81  Aligned_cols=204  Identities=14%  Similarity=0.203  Sum_probs=133.6

Q ss_pred             CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      +-..++.++|.+..+..+...+.+....+++|+||||+|||++++.++..+..........++..+         ..   
T Consensus       181 ~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~---------~l---  248 (758)
T PRK11034        181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY---------SL---  248 (758)
T ss_pred             HcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE---------ec---
Confidence            345678899999999888888877666679999999999999999999876433211111111111         00   


Q ss_pred             ccccccceecCC-CCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhhh
Q 017844           88 TLSSANHVELSP-SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRRTMEKY  157 (365)
Q Consensus        88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~~~~Ll~~le~~  157 (365)
                        .   .-.+.. ..........++.+++.+..         .++.|++|||+|.+.         .+..+.|...++. 
T Consensus       249 --~---~~~llaG~~~~Ge~e~rl~~l~~~l~~---------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-  313 (758)
T PRK11034        249 --D---IGSLLAGTKYRGDFEKRFKALLKQLEQ---------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-  313 (758)
T ss_pred             --c---HHHHhcccchhhhHHHHHHHHHHHHHh---------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-
Confidence              0   000110 00011111123344444432         133699999999872         1223334444442 


Q ss_pred             cCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC-----
Q 017844          158 SASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----KEGLQLPSGFATRLAEKSNR-----  223 (365)
Q Consensus       158 ~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~----~~~~~i~~~~~~~i~~~~~g-----  223 (365)
                       ....+|.+|+..+     ..++++.+||+.|.+++|+.++..++|+.+..    .+++.++++++..+++.+..     
T Consensus       314 -g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r  392 (758)
T PRK11034        314 -GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR  392 (758)
T ss_pred             -CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCc
Confidence             3567777777643     46899999999999999999999999987654    35788999999998886653     


Q ss_pred             -CHHHHHHHHHHHHhcC
Q 017844          224 -SLRRAILSFETCRVQQ  239 (365)
Q Consensus       224 -~lr~ai~~l~~~~~~~  239 (365)
                       -+.+|+.+|+.+++..
T Consensus       393 ~lPdKaidlldea~a~~  409 (758)
T PRK11034        393 HLPDKAIDVIDEAGARA  409 (758)
T ss_pred             cChHHHHHHHHHHHHhh
Confidence             3558999999887643

>PRK08487 DNA polymerase III subunit delta; Validated

Probab=99.62  E-value=1.7e-13  Score=126.31  Aligned_cols=286  Identities=15%  Similarity=0.192  Sum_probs=190.7

Q ss_pred             HHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844           23 QNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (365)
Q Consensus        23 ~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (365)
                      +.+...++.+..++ ++|+|..-.-....+..+...+..+....                             . +...+
T Consensus         4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~-----------------------------~-~~~~~   53 (328)
T PRK08487          4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELK-----------------------------T-LYFDE   53 (328)
T ss_pred             HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhh-----------------------------h-hchhh
Confidence            35666778887877 99999987777777777766442221100                             0 00000


Q ss_pred             cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc---ccHHHh
Q 017844          102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK---VTEAIR  178 (365)
Q Consensus       102 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~---l~~~l~  178 (365)
                            ....+++..+ ...|+    .+++++|++.++..+.......|...++.++....+|++.....+   +...+.
T Consensus        54 ------~~~~~i~~~~-~t~pl----F~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~  122 (328)
T PRK08487         54 ------YDFEQAKDFL-SQSSL----FGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQ  122 (328)
T ss_pred             ------ccHHHHHHHH-hcccc----cCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhc
Confidence                  1133444443 33333    567799999988766666667889999888765555554443332   112222


Q ss_pred             cc--ceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCC--CCCCCCHH
Q 017844          179 SR--CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQ--AIPAMDWE  254 (365)
Q Consensus       179 sR--~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~--~~~~~~~~  254 (365)
                      ..  ...+.|.+++..++..|+...+++.|+.+++++++.++..+++|+..+.+.|++++.+.+.++.++  .+.....+
T Consensus       123 ~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e  202 (328)
T PRK08487        123 KKDEAVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGS  202 (328)
T ss_pred             cCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhccccc
Confidence            22  457999999999999999999999999999999999999999999999999999999877666655  33444567


Q ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC----------CH------------HHHHH
Q 017844          255 EFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL----------DA------------EIKHE  312 (365)
Q Consensus       255 ~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~----------~~------------~~~~~  312 (365)
                      ..+|+++++++.++      .+...+..++..|.+|..|+..+.+++..-+          ..            -....
T Consensus       203 ~~vF~l~dai~~g~------~a~~~l~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~  276 (328)
T PRK08487        203 VSFEDFFEKLLNKK------DIKDDLEKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAEN  276 (328)
T ss_pred             ccHHHHHHHHHCCC------cHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHH
Confidence            88999999999864      1345577788899999999888887764410          00            01122


Q ss_pred             HHHHHHHhhhh-hHHHHhhhcccCCCCCcccc-ccccc--cccchhccc
Q 017844          313 VCHWAAYYVSI-SFQILFIVPLVDFPSPLECS-AQAAY--IQPPLIRAN  357 (365)
Q Consensus       313 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~  357 (365)
                      ..+.+..|+.. +.+++..  +.+.+...|++ ...++  ++++|+.+.
T Consensus       277 ~~~q~~~~s~~~L~~~l~~--L~e~D~~lK~g~~~~~~~~~~~~~~~~~  323 (328)
T PRK08487        277 LAKQAIKIKEAQYKEIFEL--LLEWELELKTGQKIDKNLFLLSTLIKIQ  323 (328)
T ss_pred             HHHHHhccCHHHHHHHHHH--HHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence            34556666655 4444332  44444344443 33333  888888764

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.62  E-value=7.9e-15  Score=150.05  Aligned_cols=205  Identities=15%  Similarity=0.253  Sum_probs=142.7

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~   82 (365)
                      .+++.||..++.++|+++.++.+...+.+...++++|+||||+|||++++.++..+...... ..+.+            
T Consensus       168 l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp-~~l~~------------  234 (857)
T PRK10865        168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP-EGLKG------------  234 (857)
T ss_pred             HHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCc-hhhCC------------
Confidence            45678999999999999999888888878777779999999999999999999976432110 00000            


Q ss_pred             eccccccccccceecCCCC--cCc----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------HHHH
Q 017844           83 DLELTTLSSANHVELSPSD--AGF----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQH  148 (365)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------~~~~  148 (365)
                               ...+.+....  .+.    .....++.+++.+...        .++.|+||||+|.+..        ++++
T Consensus       235 ---------~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~--------~~~~ILfIDEih~l~~~~~~~~~~d~~~  297 (857)
T PRK10865        235 ---------RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGN  297 (857)
T ss_pred             ---------CEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc--------CCCeEEEEecHHHhccCCCCccchhHHH
Confidence                     0011111110  111    1111344455544321        2447999999998853        2466


Q ss_pred             HHHHHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 017844          149 SLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAE  219 (365)
Q Consensus       149 ~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~  219 (365)
                      .|...++.  +...+|.+|+..+     ..++++.+||+.|.+..|+.++...+|+....+    .++.++++++...+.
T Consensus       298 ~lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~  375 (857)
T PRK10865        298 MLKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAT  375 (857)
T ss_pred             Hhcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHH
Confidence            66666653  4677888887765     478999999999999999999999999876643    367888999888777


Q ss_pred             HcC------CCHHHHHHHHHHHHhcC
Q 017844          220 KSN------RSLRRAILSFETCRVQQ  239 (365)
Q Consensus       220 ~~~------g~lr~ai~~l~~~~~~~  239 (365)
                      .+.      --+..|+.+++.++...
T Consensus       376 ls~ry~~~~~~pdkAi~LiD~aaa~~  401 (857)
T PRK10865        376 LSHRYIADRQLPDKAIDLIDEAASSI  401 (857)
T ss_pred             HhhccccCCCCChHHHHHHHHHhccc
Confidence            653      34568899998877653

>TIGR01128 holA DNA polymerase III, delta subunit

Probab=99.62  E-value=3.6e-14  Score=129.77  Aligned_cols=224  Identities=13%  Similarity=0.098  Sum_probs=163.1

Q ss_pred             CCCceEEEEeCCCCCC-HHHHHHHHHHHhhhcCceeEEEEecCCCc---ccHHHh--ccceeEEecCCCHHHHHHHHHHH
Q 017844          128 KRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSK---VTEAIR--SRCLNIRINSPTEEQIVKVLEFI  201 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~-~~~~~~Ll~~le~~~~~~~~Il~t~~~~~---l~~~l~--sR~~~i~~~~~~~~~~~~iL~~~  201 (365)
                      .++.++++|++++.+. ....+.|.+.+++++.++.+|++++..+.   +...+.  ++|.++.|.+++..++..++...
T Consensus        44 f~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~  123 (302)
T TIGR01128        44 FSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQAR  123 (302)
T ss_pred             ccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHH
Confidence            4567999999999876 45678999999999888888888876552   212233  49999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHH
Q 017844          202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY--PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVR  277 (365)
Q Consensus       202 ~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~--~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~  277 (365)
                      +.++|+.+++++++.++..++||++.+.+.+++++.+.+  .++.++  .+.....+..+++++++++.+    +...+.
T Consensus       124 ~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~----~~~~a~  199 (302)
T TIGR01128       124 LKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEG----KAARAL  199 (302)
T ss_pred             HHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCC----CHHHHH
Confidence            999999999999999999999999999999999988743  333222  112223344578899999875    345566


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHh---------------------CCHHHHHHHHHHHHHhhhh-hHHHHhhhcccC
Q 017844          278 GKLYELLLNCVPPVVVLKRLLYELLKR---------------------LDAEIKHEVCHWAAYYVSI-SFQILFIVPLVD  335 (365)
Q Consensus       278 ~~l~~l~~~~~~~~~il~~l~~~l~~~---------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  335 (365)
                      ..+..+...|.+|..++..+..++..-                     +.+.....+.+.+..|+.. +..++.  .+.+
T Consensus       200 ~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~--~l~~  277 (302)
T TIGR01128       200 RILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQ--ELAE  277 (302)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHH--HHHH
Confidence            667788889999999999888876541                     1222234445556666544 333332  2455


Q ss_pred             CCCCcc--ccccccc-cccchhccc
Q 017844          336 FPSPLE--CSAQAAY-IQPPLIRAN  357 (365)
Q Consensus       336 ~~~~~~--~~~~~~~-~~~~~~~~~  357 (365)
                      .....|  +...+.. +|..++++|
T Consensus       278 ~d~~~K~~~~~~~~~~le~~i~~~~  302 (302)
T TIGR01128       278 ADLQLKGTGGGDPWLALERLLLKLA  302 (302)
T ss_pred             HHHHHhCcCCCCHHHHHHHHHHHhC
Confidence            554555  3555555 888888875

subunit around DNA forming a DNA sliding clamp.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.61  E-value=7.6e-15  Score=137.34  Aligned_cols=178  Identities=19%  Similarity=0.319  Sum_probs=113.9

Q ss_pred             CCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~   74 (365)
                      ...+|+++.|.+..++.++.++..           | ..+ +++|+||||||||++++++++.+..+.   +.+.+..  
T Consensus       117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~---~~v~~~~--  191 (364)
T TIGR01242       117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVVGSE--  191 (364)
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE---EecchHH--
Confidence            345788999999999988887742           1 123 399999999999999999999763221   0010000  


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------  143 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------  143 (365)
                                         ...   ...+ .....+++.+....         ...+.|++|||+|.+.           
T Consensus       192 -------------------l~~---~~~g-~~~~~i~~~f~~a~---------~~~p~il~iDEiD~l~~~~~~~~~~~~  239 (364)
T TIGR01242       192 -------------------LVR---KYIG-EGARLVREIFELAK---------EKAPSIIFIDEIDAIAAKRTDSGTSGD  239 (364)
T ss_pred             -------------------HHH---Hhhh-HHHHHHHHHHHHHH---------hcCCcEEEhhhhhhhccccccCCCCcc
Confidence                               000   0000 01112333333222         1234799999999873           


Q ss_pred             HHHHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017844          144 REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (365)
Q Consensus       144 ~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~  215 (365)
                      ...+..+...+.+.     ..++.+|++||.++.+++++.+  |+ ..+.|+.|+.++..++++..+...... ++..+.
T Consensus       240 ~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~  318 (364)
T TIGR01242       240 REVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLE  318 (364)
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHH
Confidence            33445555555432     3468899999999999999975  55 379999999999999999877544332 123467


Q ss_pred             HHHHHcCC
Q 017844          216 RLAEKSNR  223 (365)
Q Consensus       216 ~i~~~~~g  223 (365)
                      .+++.+.|
T Consensus       319 ~la~~t~g  326 (364)
T TIGR01242       319 AIAKMTEG  326 (364)
T ss_pred             HHHHHcCC
Confidence            77777765

Many proteins may score above the trusted cutoff because an internal

>PRK07914 hypothetical protein; Reviewed

Probab=99.61  E-value=1.1e-13  Score=127.27  Aligned_cols=226  Identities=11%  Similarity=0.063  Sum_probs=168.7

Q ss_pred             CCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC---cccHHHhccc-eeEEecCC-CHHHHHHHHHHH
Q 017844          127 GKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIRSRC-LNIRINSP-TEEQIVKVLEFI  201 (365)
Q Consensus       127 ~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~---~l~~~l~sR~-~~i~~~~~-~~~~~~~iL~~~  201 (365)
                      ..+++++|+++++..+..+..+.|..+++.+++.+.+|++++...   ++..++.... .++.+.++ +..++..|+...
T Consensus        61 lF~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~  140 (320)
T PRK07914         61 LFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKE  140 (320)
T ss_pred             CCCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHH
Confidence            367789999999877766677789999999888787887765433   2344666553 58899998 999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHH
Q 017844          202 AKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ-QYPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRG  278 (365)
Q Consensus       202 ~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~  278 (365)
                      +++.|+++++++++.+++..+||+..+.+.+++++.+ ++.++.+.  .+.....+..+|++++++..+    +..++..
T Consensus       141 a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g----~~~~A~~  216 (320)
T PRK07914        141 FRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAG----DVAGAAE  216 (320)
T ss_pred             HHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCC----CHHHHHH
Confidence            9999999999999999999999999999999998765 33455443  344455667899999999985    4566777


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHH------------------hCCHHHHHHHHHHHHHhhhh-hHHHHhhhcccCCCCC
Q 017844          279 KLYELLLNCVPPVVVLKRLLYELLK------------------RLDAEIKHEVCHWAAYYVSI-SFQILFIVPLVDFPSP  339 (365)
Q Consensus       279 ~l~~l~~~~~~~~~il~~l~~~l~~------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  339 (365)
                      .+..++..|.+|..|+..+.+++..                  .+.+--...+.+.+..|+.. +.+.+..  +.+....
T Consensus       217 ~l~~L~~~ge~p~~il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~--l~~~D~~  294 (320)
T PRK07914        217 ALRWAMMRGEPHVVLADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRV--VAALNAD  294 (320)
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHH--HHHHHHH
Confidence            7888889999999998888776554                  01111223345555666655 4444332  5555556


Q ss_pred             cccc-ccccc-cccchhcccC
Q 017844          340 LECS-AQAAY-IQPPLIRANS  358 (365)
Q Consensus       340 ~~~~-~~~~~-~~~~~~~~~~  358 (365)
                      .|++ .++.+ +|+.|++++.
T Consensus       295 lK~~~~~~~~~lE~~i~~~~~  315 (320)
T PRK07914        295 VKGAAADADYALESAVRRVAE  315 (320)
T ss_pred             hhcCCCChHHHHHHHHHHHHH
Confidence            6654 77888 9999999865

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.61  E-value=2.1e-14  Score=145.85  Aligned_cols=177  Identities=18%  Similarity=0.239  Sum_probs=119.4

Q ss_pred             CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      .+|+++.|.+.+++.|+..+.-           + +.+. ++|+||||||||++|+++|+++..+   .+.+.+..+   
T Consensus       450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~---fi~v~~~~l---  523 (733)
T TIGR01243       450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN---FIAVRGPEI---  523 (733)
T ss_pred             cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC---EEEEehHHH---
Confidence            4789999999999988887641           1 2333 9999999999999999999975321   111111100   


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------------
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------  144 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------------  144 (365)
                                        +.    .........+++.+.....         ..+.|++|||+|.+.+            
T Consensus       524 ------------------~~----~~vGese~~i~~~f~~A~~---------~~p~iifiDEid~l~~~r~~~~~~~~~~  572 (733)
T TIGR01243       524 ------------------LS----KWVGESEKAIREIFRKARQ---------AAPAIIFFDEIDAIAPARGARFDTSVTD  572 (733)
T ss_pred             ------------------hh----cccCcHHHHHHHHHHHHHh---------cCCEEEEEEChhhhhccCCCCCCccHHH
Confidence                              00    0111112235555555433         2458999999987731            


Q ss_pred             HHHHHHHHHHhh--hcCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017844          145 EAQHSLRRTMEK--YSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (365)
Q Consensus       145 ~~~~~Ll~~le~--~~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~  219 (365)
                      ...+.|+..|+.  ...++.+|.+||.++.+++++++  ||. .+.|+.|+.++..++++....+..+. ++..++.+++
T Consensus       573 ~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~  651 (733)
T TIGR01243       573 RIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAE  651 (733)
T ss_pred             HHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Confidence            234567777764  34567888899999999999986  885 89999999999999998765443322 2335788888


Q ss_pred             HcCCC
Q 017844          220 KSNRS  224 (365)
Q Consensus       220 ~~~g~  224 (365)
                      .+.|-
T Consensus       652 ~t~g~  656 (733)
T TIGR01243       652 MTEGY  656 (733)
T ss_pred             HcCCC
Confidence            77763

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK07452 DNA polymerase III subunit delta; Validated

Probab=99.60  E-value=1.4e-13  Score=127.06  Aligned_cols=280  Identities=20%  Similarity=0.214  Sum_probs=186.5

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHH
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI  114 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  114 (365)
                      |.++|||+...-+...++.+.+.+..+.....++                          ..+...+.     ..+.+.+
T Consensus         2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~--------------------------~~~d~~~~-----~~~~~~~   50 (326)
T PRK07452          2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNY--------------------------SRLDGDDA-----DQAIQAL   50 (326)
T ss_pred             CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcch--------------------------hhcCCccc-----hHHHHHH
Confidence            4589999999888888888877553322111000                          11111111     1123444


Q ss_pred             HHHHhcCCCCCCCCCCceEEEEeCCCCC---CHHHHHHHHHHHhhhcCceeEEEEecC-CC---cccHHHhccceeEEec
Q 017844          115 KEMAKNRPIDTKGKRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNS-SS---KVTEAIRSRCLNIRIN  187 (365)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~vliiDE~~~L---~~~~~~~Ll~~le~~~~~~~~Il~t~~-~~---~l~~~l~sR~~~i~~~  187 (365)
                      .. +...|+    .+++++|++++++.+   ..+..+.|.++++.+++++.+|+++.. .+   +....+...+.+..|.
T Consensus        51 ~~-~~t~pf----f~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~  125 (326)
T PRK07452         51 NE-AMTPPF----GSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFS  125 (326)
T ss_pred             HH-hcCCCC----CCCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEec
Confidence            33 233343    567799999998654   567778899999998888888886543 22   3455677777777776


Q ss_pred             CC---CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--C--CCCCCC--CCCCCCHHHHHH
Q 017844          188 SP---TEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ--Y--PFKDNQ--AIPAMDWEEFVF  258 (365)
Q Consensus       188 ~~---~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~--~--~~~~~~--~~~~~~~~~~i~  258 (365)
                      ++   +.+++..|+...+++.|+.+++++++.++..+++|++.+.+.+++++.+.  .  .++.++  .+... .+..+|
T Consensus       126 ~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~-~~~~if  204 (326)
T PRK07452        126 LIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSN-TTQNSL  204 (326)
T ss_pred             CCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcc-CcCcHH
Confidence            55   45779999999999999999999999999999999999999999998872  2  455444  22222 246789


Q ss_pred             HHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC----------C-HH-H-----------HHHHHH
Q 017844          259 EIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL----------D-AE-I-----------KHEVCH  315 (365)
Q Consensus       259 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~----------~-~~-~-----------~~~~~~  315 (365)
                      +++++++.+    +..++...+..++..|.+|..|+..+.+++..-+          . .+ .           ...+.+
T Consensus       205 ~l~dai~~~----~~~~A~~~l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~  280 (326)
T PRK07452        205 QLADALLQG----NTGKALALLDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRK  280 (326)
T ss_pred             HHHHHHHCC----CHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHH
Confidence            999999984    5566777788889999999999988888765410          1 11 0           011223


Q ss_pred             HHHHhhhh-hHHHHhhhcccCCCCCccccccccc-cccchhccc
Q 017844          316 WAAYYVSI-SFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRAN  357 (365)
Q Consensus       316 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  357 (365)
                      .+..|+.. +.+.+-  .+.+..-..|++..+.. +|..++++|
T Consensus       281 ~~~~~s~~~L~~~l~--~L~~~D~~iK~g~~~~~~le~~i~~~~  322 (326)
T PRK07452        281 EVQGLSSQQLLKLLP--LLLDLEASLKQGANPINALQDKLIELC  322 (326)
T ss_pred             HHhcCCHHHHHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            34455544 333322  24445556677766666 888887776

>PRK08485 DNA polymerase III subunit delta'; Validated

Probab=99.60  E-value=5.6e-15  Score=121.86  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee-----
Q 017844          109 VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN-----  183 (365)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~-----  183 (365)
                      .++++++.+....       ...+ ++|++++.|+.+++|+|+++|||||.++.||++|+++.++++|++|||+.     
T Consensus        41 ~iReii~~~~~~~-------~~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~  112 (206)
T PRK08485         41 DAKEVIAEAYIAE-------SEEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQ  112 (206)
T ss_pred             HHHHHHHHHhhCC-------CCcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccc
Confidence            4666666544322       1224 46889999999999999999999999999999999999999999999986     


Q ss_pred             --------EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          184 --------IRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       184 --------i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                              +.|.+++.+++.+.|+. ..++++...+++.+.|++.+.|.+|+++.+.++..
T Consensus       113 ~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l  172 (206)
T PRK08485        113 KKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEEL  172 (206)
T ss_pred             cccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence                    77999999999999998 67888888899999999999999999988776554

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=99.60  E-value=8.3e-14  Score=120.16  Aligned_cols=106  Identities=28%  Similarity=0.320  Sum_probs=92.4

Q ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCC-------------CcccHHHhccceeEEecCCCHHHHHHH
Q 017844          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS-------------SKVTEAIRSRCLNIRINSPTEEQIVKV  197 (365)
Q Consensus       131 ~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~-------------~~l~~~l~sR~~~i~~~~~~~~~~~~i  197 (365)
                      +.|+||||+|+|+-+.+..|.+.||.+-. ..+||++|.-             ..+++.+.+|..+++-.+++.++++++
T Consensus       297 PGVLFIDEVhMLDiEcFTyL~kalES~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I  375 (456)
T KOG1942|consen  297 PGVLFIDEVHMLDIECFTYLHKALESPIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI  375 (456)
T ss_pred             CcceEeeehhhhhhHHHHHHHHHhcCCCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence            56999999999999999999999997643 4577777743             248899999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Q 017844          198 LEFIAKKEGLQLPSGFATRLAEK-SNRSLRRAILSFETCRV  237 (365)
Q Consensus       198 L~~~~~~~~~~i~~~~~~~i~~~-~~g~lr~ai~~l~~~~~  237 (365)
                      ++.+++.+|+.++++++..+++. +..++|.++++|.-+..
T Consensus       376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~  416 (456)
T KOG1942|consen  376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASI  416 (456)
T ss_pred             HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHH
Confidence            99999999999999999999995 46799999999984433

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.60  E-value=4.9e-14  Score=144.43  Aligned_cols=184  Identities=19%  Similarity=0.348  Sum_probs=123.8

Q ss_pred             CccccCHHHHHHHHHHHHcC--------CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           13 DQVIVHQDIAQNLKKLVTEQ--------DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~--------~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      +.++||+++++.+...+...        +..+ ++|+||+|+|||++|+++|+.+++.....+.++...| ....    .
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~-~~~~----~  583 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY-MEKH----T  583 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc-cccc----c
Confidence            45789999999998888531        2223 8999999999999999999998876555555554433 0000    0


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh------
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------  157 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~------  157 (365)
                      +       ...+.-.+.-.+.....   .+...+.         ..++.|+++||++.++++.++.|+++|++.      
T Consensus       584 ~-------~~l~g~~~gyvg~~~~~---~l~~~~~---------~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~  644 (821)
T CHL00095        584 V-------SKLIGSPPGYVGYNEGG---QLTEAVR---------KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK  644 (821)
T ss_pred             H-------HHhcCCCCcccCcCccc---hHHHHHH---------hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCC
Confidence            0       00011011111111111   1222222         124589999999999999999999999973      


Q ss_pred             -----cCceeEEEEecCCCc-------------------------------------ccHHHhccc-eeEEecCCCHHHH
Q 017844          158 -----SASCRLILCCNSSSK-------------------------------------VTEAIRSRC-LNIRINSPTEEQI  194 (365)
Q Consensus       158 -----~~~~~~Il~t~~~~~-------------------------------------l~~~l~sR~-~~i~~~~~~~~~~  194 (365)
                           -.++.||++||-...                                     +.|.+.+|+ .++.|.+++.+++
T Consensus       645 g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l  724 (821)
T CHL00095        645 GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDV  724 (821)
T ss_pred             CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHH
Confidence                 246778888773210                                     335788898 6999999999999


Q ss_pred             HHHHHHHHHH-------cC--CCCCHHHHHHHHHH
Q 017844          195 VKVLEFIAKK-------EG--LQLPSGFATRLAEK  220 (365)
Q Consensus       195 ~~iL~~~~~~-------~~--~~i~~~~~~~i~~~  220 (365)
                      .+++...+.+       .|  +.+++++.+.|++.
T Consensus       725 ~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~  759 (821)
T CHL00095        725 WEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEE  759 (821)
T ss_pred             HHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHh
Confidence            9998776653       33  46889999999996

>PRK05907 hypothetical protein; Provisional

Probab=99.60  E-value=4.6e-13  Score=121.32  Aligned_cols=281  Identities=14%  Similarity=0.169  Sum_probs=189.7

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (365)
                      ...+...++.|+ |.++++|..-   ....+.+...+..++.  ..+++..+                            
T Consensus         7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~--~~fdg~~~----------------------------   52 (311)
T PRK05907          7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK--SEFDGQGL----------------------------   52 (311)
T ss_pred             HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc--ceecCCCC----------------------------
Confidence            345556677888 7799999887   4455555444432221  11111111                            


Q ss_pred             cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEE-EEecCCCc---ccHHH
Q 017844          102 AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLI-LCCNSSSK---VTEAI  177 (365)
Q Consensus       102 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~I-l~t~~~~~---l~~~l  177 (365)
                             ...+++.. +...|+    .+.+++|++.+++.+.....+.|.++++++++.+.+| ++. ..+.   +...+
T Consensus        53 -------~~~~ii~~-aetlPf----FaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i  119 (311)
T PRK05907         53 -------LQQELLSW-TEHFGL----FASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKL  119 (311)
T ss_pred             -------CHHHHHHH-HhcCCc----ccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHH
Confidence                   13344444 444444    6677899998887777666788999999998875555 444 3322   22334


Q ss_pred             hccceeE----EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCC---CCCCCC--C
Q 017844          178 RSRCLNI----RINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQY---PFKDNQ--A  247 (365)
Q Consensus       178 ~sR~~~i----~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~~~---~~~~~~--~  247 (365)
                      .. ...+    .|+++...++.+|+...++++|..+++++++.+++.+ +||+..+.+.+++++.+.+   .++.++  .
T Consensus       120 ~k-~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~  198 (311)
T PRK05907        120 SS-ALCLSLFGEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQS  198 (311)
T ss_pred             hh-cceeccccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHH
Confidence            32 4444    8999999999999999999999999999999999999 6999999999999988833   354443  3


Q ss_pred             CCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHhCCHHHHHHHHH-HHHH----hh
Q 017844          248 IPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLN-CVPPVVVLKRLLYELLKRLDAEIKHEVCH-WAAY----YV  321 (365)
Q Consensus       248 ~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~-~~~~~~il~~l~~~l~~~~~~~~~~~~~~-~~~~----~~  321 (365)
                      +.....+..+|+++++++.    ++..++...+.+|+.+ |.+|..|+..+.++++  +.-+...+-+. ...-    |+
T Consensus       199 lv~~s~e~nIF~L~dai~~----~~~~~Al~il~~Ll~~~ge~p~~ILall~rQfl--~~~k~l~~~g~~~~~p~~vafs  272 (311)
T PRK05907        199 FVVKKEAASLWKLRDALLR----RDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQCL--YGLRSIEEQSKERKHRIFVAYG  272 (311)
T ss_pred             HhcCcccccHHHHHHHHHc----cCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--HHHHHHHHhcCCCCCCeEEEEC
Confidence            4556678899999999998    4567788889999999 9999999999999982  22221111100 0000    33


Q ss_pred             hh-hHHHHhhhcccCCCCCcccc-ccccc-cccchhcccC
Q 017844          322 SI-SFQILFIVPLVDFPSPLECS-AQAAY-IQPPLIRANS  358 (365)
Q Consensus       322 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~  358 (365)
                      .. +.+.+..  +.+.....|++ .++.. +|..|++++.
T Consensus       273 ~~~L~~~~~~--l~~~D~~iKtg~~d~~~~lElli~~~~~  310 (311)
T PRK05907        273 KERLLQALNL--LFYAESLIKNNVQDPILAVETLVIRMTN  310 (311)
T ss_pred             HHHHHHHHHH--HHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence            22 4454443  45555466665 45555 8999888764

>PRK05574 holA DNA polymerase III subunit delta; Reviewed

Probab=99.60  E-value=3.3e-13  Score=125.54  Aligned_cols=225  Identities=14%  Similarity=0.081  Sum_probs=160.3

Q ss_pred             CCCceEEEEeCCCCCCHHHH----HHHHHHHhhhcC--ceeEEEEecCCC---cc---cHHHhccceeEEecCCCHHHHH
Q 017844          128 KRGFKVLVLNEVDKLSREAQ----HSLRRTMEKYSA--SCRLILCCNSSS---KV---TEAIRSRCLNIRINSPTEEQIV  195 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~~~~~----~~Ll~~le~~~~--~~~~Il~t~~~~---~l---~~~l~sR~~~i~~~~~~~~~~~  195 (365)
                      .++.++++|++++.+.....    ..+...+ ++++  ...+++.++..+   ++   .+++.+++..+.+.+++..++.
T Consensus        74 F~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~  152 (340)
T PRK05574         74 FSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELP  152 (340)
T ss_pred             cccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHH
Confidence            56779999999998865422    2333334 3333  234444444433   23   5678888999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCCC--CCCCCCHHHHHHHHHHHHHhccChh
Q 017844          196 KVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY--PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPK  271 (365)
Q Consensus       196 ~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~--~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~  271 (365)
                      .++...+.+.|+.+++++++.+++.++||++.+.+.+++++.+.+  .++.+.  .+.....+..+++++++++.++   
T Consensus       153 ~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~---  229 (340)
T PRK05574        153 QWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGK---  229 (340)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCC---
Confidence            999999999999999999999999999999999999999987753  244333  1223345567889999998853   


Q ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh---------------------CCHHHHHHHHHHHHHhhhh-hHHHHh
Q 017844          272 RLFQVRGKLYELLLNCVPPVVVLKRLLYELLKR---------------------LDAEIKHEVCHWAAYYVSI-SFQILF  329 (365)
Q Consensus       272 ~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~---------------------~~~~~~~~~~~~~~~~~~~-~~~~~~  329 (365)
                       ...+...+..++.+|.+|..++..+..++..-                     +.+.....+.+.+..|+.. +.+.+.
T Consensus       230 -~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~  308 (340)
T PRK05574        230 -IKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQ  308 (340)
T ss_pred             -HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHH
Confidence             45566677888888999999999888876541                     1122234455666667655 444433


Q ss_pred             hhcccCCCCCcccc--ccccc-cccchhcccCC
Q 017844          330 IVPLVDFPSPLECS--AQAAY-IQPPLIRANSD  359 (365)
Q Consensus       330 ~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~  359 (365)
                        .+.+.+...|++  .++.. +|..++++|..
T Consensus       309 --~L~~~d~~iK~~~~~~~~~~le~~ii~l~~~  339 (340)
T PRK05574        309 --LLAETDYQIKTGYGGDKWLELELLLLKLAGA  339 (340)
T ss_pred             --HHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Confidence              255666677776  46767 99999998864

>PRK05629 hypothetical protein; Validated

Probab=99.60  E-value=2.1e-13  Score=125.26  Aligned_cols=224  Identities=13%  Similarity=0.098  Sum_probs=166.7

Q ss_pred             CCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC---cccHHHhccceeEEecCCCHHHHHHHHHHHHHH
Q 017844          128 KRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS---KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK  204 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~---~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~  204 (365)
                      .+++++|+++.++.......+.++..+.++++.+.+|+++....   ++..+++..+.++.+.++...++..|+...+++
T Consensus        62 F~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~  141 (318)
T PRK05629         62 FGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKN  141 (318)
T ss_pred             cCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHH
Confidence            66779999999877666667788999998888877888776443   244567777889999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHH
Q 017844          205 EGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ-YPFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLY  281 (365)
Q Consensus       205 ~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~-~~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~  281 (365)
                      .|.++++++++.+++.+++|+..+.+.+++++.+. +.++.++  .+.....+..+|+++++++.+    +..++...+.
T Consensus       142 ~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g----~~~~Al~~l~  217 (318)
T PRK05629        142 HGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAG----QVSKAVASTR  217 (318)
T ss_pred             cCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcC----CHHHHHHHHH
Confidence            99999999999999999999999999999988763 3455444  233445678899999999984    4566777788


Q ss_pred             HHHHcCCChHHHHHHHHHH---HHHh------CC-----------HHHHHHHHHHHHHhhhh-hHHHHhhhcccCCCCCc
Q 017844          282 ELLLNCVPPVVVLKRLLYE---LLKR------LD-----------AEIKHEVCHWAAYYVSI-SFQILFIVPLVDFPSPL  340 (365)
Q Consensus       282 ~l~~~~~~~~~il~~l~~~---l~~~------~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  340 (365)
                      .++..|.+|..|+..+.++   +.+-      .+           +--...+.+.+..|+.. +.+.+-.  +.+.....
T Consensus       218 ~l~~~g~~pi~il~~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~--l~~~D~~~  295 (318)
T PRK05629        218 RALQLGVSPVALAAALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVIL--MADLDAAV  295 (318)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHH--HHHHHHHh
Confidence            8999999999997777654   2221      11           11122345666667655 4433332  44444466


Q ss_pred             cc-cccccc-cccchhccc
Q 017844          341 EC-SAQAAY-IQPPLIRAN  357 (365)
Q Consensus       341 ~~-~~~~~~-~~~~~~~~~  357 (365)
                      |+ ...|.+ +|..++++.
T Consensus       296 K~~~~d~~~~lE~~i~~~~  314 (318)
T PRK05629        296 KGQGGDPEFAIESAVRRVA  314 (318)
T ss_pred             hCCCCCHHHHHHHHHHHHH
Confidence            65 558888 899888875

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.59  E-value=4.1e-14  Score=142.86  Aligned_cols=204  Identities=16%  Similarity=0.211  Sum_probs=126.8

Q ss_pred             CCcccccCCCCC---------C-ccccCHHHHHHHHHHHHc------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCc
Q 017844            1 MLWVDKYRPKTL---------D-QVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE   64 (365)
Q Consensus         1 ~~w~~k~rP~~~---------~-~iig~~~~~~~l~~~l~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~   64 (365)
                      +|| .++.+.++         + +++|.+.+++.+..++..      ...+.++|+||||+||||+++.+++.+..+ ..
T Consensus       301 ~pw-~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~-~~  378 (784)
T PRK10787        301 VPW-NARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK-YV  378 (784)
T ss_pred             CCC-CCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC-EE
Confidence            478 44555543         2 478999999988877652      233459999999999999999999966322 11


Q ss_pred             cceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH
Q 017844           65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR  144 (365)
Q Consensus        65 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~  144 (365)
                      .+...+..          +.  ..+.... ..+.    +....    ..+..+...       .....|++|||+|.+..
T Consensus       379 ~i~~~~~~----------d~--~~i~g~~-~~~~----g~~~G----~~~~~l~~~-------~~~~~villDEidk~~~  430 (784)
T PRK10787        379 RMALGGVR----------DE--AEIRGHR-RTYI----GSMPG----KLIQKMAKV-------GVKNPLFLLDEIDKMSS  430 (784)
T ss_pred             EEEcCCCC----------CH--HHhccch-hccC----CCCCc----HHHHHHHhc-------CCCCCEEEEEChhhccc
Confidence            11111100          00  0000000 0011    00111    111222211       11236999999999987


Q ss_pred             HH----HHHHHHHHhhh---------------cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHH-
Q 017844          145 EA----QHSLRRTMEKY---------------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK-  204 (365)
Q Consensus       145 ~~----~~~Ll~~le~~---------------~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~-  204 (365)
                      ..    +.+|+..++.-               -.++.||+|+|.. .+++++++||.++.|.+++.++..++.++.+.. 
T Consensus       431 ~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k  509 (784)
T PRK10787        431 DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPK  509 (784)
T ss_pred             ccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHH
Confidence            64    58899999741               1456677767665 699999999999999999999999998877641 


Q ss_pred             ---------cCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHH
Q 017844          205 ---------EGLQLPSGFATRLAEKSN--RSLRRAILSFETC  235 (365)
Q Consensus       205 ---------~~~~i~~~~~~~i~~~~~--g~lr~ai~~l~~~  235 (365)
                               ..+.++++++..|++.+.  -.+|.....+++.
T Consensus       510 ~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i  551 (784)
T PRK10787        510 QIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKL  551 (784)
T ss_pred             HHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHH
Confidence                     124688999999998532  2344444444443

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.59  E-value=2.9e-14  Score=146.05  Aligned_cols=202  Identities=15%  Similarity=0.230  Sum_probs=139.5

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      ++-+...++.++|+++.++.+..++.....++++|+||||||||++++.+|..+........ ..+              
T Consensus       171 ~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~-l~~--------------  235 (821)
T CHL00095        171 KEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI-LED--------------  235 (821)
T ss_pred             HHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-hcC--------------
Confidence            34456789999999999999999998777777999999999999999999998743221110 000              


Q ss_pred             cccccccccceecCCC------CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------HHHHHH
Q 017844           85 ELTTLSSANHVELSPS------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSL  150 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------~~~~~L  150 (365)
                             ...+.+...      .........++.+++.+..         .++.|+||||+|.+..        .+.+.|
T Consensus       236 -------~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~---------~~~~ILfiDEih~l~~~g~~~g~~~~a~lL  299 (821)
T CHL00095        236 -------KLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE---------NNNIILVIDEVHTLIGAGAAEGAIDAANIL  299 (821)
T ss_pred             -------CeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh---------cCCeEEEEecHHHHhcCCCCCCcccHHHHh
Confidence                   011111111      1111111134445554432         2346999999987743        234555


Q ss_pred             HHHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHc
Q 017844          151 RRTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----KEGLQLPSGFATRLAEKS  221 (365)
Q Consensus       151 l~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~----~~~~~i~~~~~~~i~~~~  221 (365)
                      ...+.  ...+.+|.+|+..+     ...+++.+||..+.+..|+.++...+++....    ..++.++++++..++..+
T Consensus       300 kp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls  377 (821)
T CHL00095        300 KPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS  377 (821)
T ss_pred             HHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence            55555  24577888887654     36789999999999999999998888876543    346779999999999988


Q ss_pred             CC---C---HHHHHHHHHHHHhcC
Q 017844          222 NR---S---LRRAILSFETCRVQQ  239 (365)
Q Consensus       222 ~g---~---lr~ai~~l~~~~~~~  239 (365)
                      .|   |   +++|+.+|+.++...
T Consensus       378 ~~yi~~r~lPdkaidlld~a~a~~  401 (821)
T CHL00095        378 DQYIADRFLPDKAIDLLDEAGSRV  401 (821)
T ss_pred             hccCccccCchHHHHHHHHHHHHH
Confidence            75   3   778999999877653

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.59  E-value=1.1e-13  Score=142.33  Aligned_cols=200  Identities=18%  Similarity=0.291  Sum_probs=134.2

Q ss_pred             CccccCHHHHHHHHHHHHcC--------CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~--------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      ..++||+.+++.+...+...        +.. .++|+||+|+|||++|++++..+++.....+.+++..+ ...      
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~-~~~------  637 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEY-MEK------  637 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhh-ccc------
Confidence            45899999999999888642        122 39999999999999999999988776555555555443 000      


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----  158 (365)
                           ......+...+.-.+.....   .+...+. .        .++.|+++||++.++++.++.|+++|++..     
T Consensus       638 -----~~~~~l~g~~~g~~g~~~~g---~l~~~v~-~--------~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~  700 (852)
T TIGR03346       638 -----HSVARLIGAPPGYVGYEEGG---QLTEAVR-R--------KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ  700 (852)
T ss_pred             -----chHHHhcCCCCCccCccccc---HHHHHHH-c--------CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCC
Confidence                 00000111111111111111   1222221 1        234799999999999999999999998742     


Q ss_pred             ------CceeEEEEecCCCc-------------------------ccHHHhccc-eeEEecCCCHHHHHHHHHHHHH---
Q 017844          159 ------ASCRLILCCNSSSK-------------------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAK---  203 (365)
Q Consensus       159 ------~~~~~Il~t~~~~~-------------------------l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~---  203 (365)
                            .++.||++||-...                         +.|.+..|+ .++.|.|++.+++.+++...+.   
T Consensus       701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~  780 (852)
T TIGR03346       701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLR  780 (852)
T ss_pred             CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHH
Confidence                  34558888775221                         345677788 5899999999999999876554   


Q ss_pred             ----HcC--CCCCHHHHHHHHHH-c--CCCHHHHHHHHHHHH
Q 017844          204 ----KEG--LQLPSGFATRLAEK-S--NRSLRRAILSFETCR  236 (365)
Q Consensus       204 ----~~~--~~i~~~~~~~i~~~-~--~g~lr~ai~~l~~~~  236 (365)
                          ..|  +.+++++++.|++. +  .+++|...+.++...
T Consensus       781 ~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i  822 (852)
T TIGR03346       781 KRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI  822 (852)
T ss_pred             HHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence                222  57899999999996 3  588888888877654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1e-13  Score=123.92  Aligned_cols=172  Identities=22%  Similarity=0.259  Sum_probs=116.3

Q ss_pred             CCCCccccCHHHHHHHHHHHH----------cCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844           10 KTLDQVIVHQDIAQNLKKLVT----------EQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~----------~~~~~~--lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      -.|+|+.|..++++.|++++-          ..+-|-  +|++||||+|||.||+++|.+..           ..|    
T Consensus       209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-----------tTF----  273 (491)
T KOG0738|consen  209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG-----------TTF----  273 (491)
T ss_pred             cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc-----------CeE----
Confidence            468999999999999998762          333332  99999999999999999998631           111    


Q ss_pred             CCcceeccccccccccceecCC----CCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH---------
Q 017844           78 GSRNIDLELTTLSSANHVELSP----SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------  144 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~---------  144 (365)
                                       +.+..    +.........++-+++....+.         +.+|||||+|.|..         
T Consensus       274 -----------------FNVSsstltSKwRGeSEKlvRlLFemARfyA---------PStIFiDEIDslcs~RG~s~EHE  327 (491)
T KOG0738|consen  274 -----------------FNVSSSTLTSKWRGESEKLVRLLFEMARFYA---------PSTIFIDEIDSLCSQRGGSSEHE  327 (491)
T ss_pred             -----------------EEechhhhhhhhccchHHHHHHHHHHHHHhC---------CceeehhhHHHHHhcCCCccchh
Confidence                             11111    2223333334555555444433         36999999998842         


Q ss_pred             ---HHHHHHHHHHhhhc-----CceeEEEE-ecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 017844          145 ---EAQHSLRRTMEKYS-----ASCRLILC-CNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (365)
Q Consensus       145 ---~~~~~Ll~~le~~~-----~~~~~Il~-t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~  214 (365)
                         ...+.||-.|+...     ..++||++ ||.+..+++++++|+. .|.++-|+.+.....++..+..- ..-++-.+
T Consensus       328 aSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~-~~~~~~~~  406 (491)
T KOG0738|consen  328 ASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSV-ELDDPVNL  406 (491)
T ss_pred             HHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc-cCCCCccH
Confidence               24556777776432     23456665 5566799999999996 89999999999888888655432 22345557


Q ss_pred             HHHHHHcCC
Q 017844          215 TRLAEKSNR  223 (365)
Q Consensus       215 ~~i~~~~~g  223 (365)
                      +.|++.++|
T Consensus       407 ~~lae~~eG  415 (491)
T KOG0738|consen  407 EDLAERSEG  415 (491)
T ss_pred             HHHHHHhcC
Confidence            777776665

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=8.3e-14  Score=130.91  Aligned_cols=174  Identities=20%  Similarity=0.282  Sum_probs=119.8

Q ss_pred             CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      .+|+++-+.+++...|..++-.           | ..|. +|++||||||||.+|+++|++-           +.+|   
T Consensus       508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-----------g~NF---  573 (802)
T KOG0733|consen  508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-----------GANF---  573 (802)
T ss_pred             CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-----------cCce---
Confidence            4799999999999988887742           1 2344 9999999999999999999964           2222   


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------H
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E  145 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----------~  145 (365)
                                -.+..+..+..    +.......+++.+.....         +.+.|||+||+|.|.+           .
T Consensus       574 ----------isVKGPELlNk----YVGESErAVR~vFqRAR~---------saPCVIFFDEiDaL~p~R~~~~s~~s~R  630 (802)
T KOG0733|consen  574 ----------ISVKGPELLNK----YVGESERAVRQVFQRARA---------SAPCVIFFDEIDALVPRRSDEGSSVSSR  630 (802)
T ss_pred             ----------EeecCHHHHHH----HhhhHHHHHHHHHHHhhc---------CCCeEEEecchhhcCcccCCCCchhHHH
Confidence                      11111111111    011122346666655443         3457999999999843           2


Q ss_pred             HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 017844          146 AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG-FATRLAE  219 (365)
Q Consensus       146 ~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~-~~~~i~~  219 (365)
                      ..|.||.-|+..  ..++.+|.+||.++.+++++.+-.   ..+.+..|+.++..+||+.+.+..+..++++ .++.|++
T Consensus       631 vvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~  710 (802)
T KOG0733|consen  631 VVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR  710 (802)
T ss_pred             HHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence            456677666644  346778888999999999998754   3788899999999999999988655555544 3777776


Q ss_pred             H
Q 017844          220 K  220 (365)
Q Consensus       220 ~  220 (365)
                      .
T Consensus       711 ~  711 (802)
T KOG0733|consen  711 N  711 (802)
T ss_pred             c
Confidence            4

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.58  E-value=1.5e-13  Score=123.60  Aligned_cols=205  Identities=17%  Similarity=0.185  Sum_probs=117.4

Q ss_pred             cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (365)
                      ++..+...+...+..+. +.++++||+|+||||+++.+++.+.+.......+.      .+.....+.. ..+.  ..+.
T Consensus        27 ~~~~~~~~l~~~~~~~~-~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~------~~~~~~~~~l-~~i~--~~lG   96 (269)
T TIGR03015        27 GHKRAMAYLEYGLSQRE-GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV------NTRVDAEDLL-RMVA--ADFG   96 (269)
T ss_pred             HHHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee------CCCCCHHHHH-HHHH--HHcC
Confidence            34556666666665432 23899999999999999999987643211100000      0000000000 0000  0011


Q ss_pred             cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---cCceeEEEEecCCC--
Q 017844           97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---SASCRLILCCNSSS--  171 (365)
Q Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---~~~~~~Il~t~~~~--  171 (365)
                      +...  +.......+.+...+....     ..++..+++|||++.++....+.|..+.+..   ...+.+++++....  
T Consensus        97 ~~~~--~~~~~~~~~~l~~~l~~~~-----~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~  169 (269)
T TIGR03015        97 LETE--GRDKAALLRELEDFLIEQF-----AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRE  169 (269)
T ss_pred             CCCC--CCCHHHHHHHHHHHHHHHH-----hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHH
Confidence            1111  1111111112211111111     1344579999999999988777665443321   12234455543211  


Q ss_pred             ----cccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844          172 ----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG----LQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       172 ----~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~----~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~  238 (365)
                          .-...+.+|+ ..+++++++.+++.+++...+...|    ..+++++++.|++.++|++|....+++.+...
T Consensus       170 ~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~  245 (269)
T TIGR03015       170 TLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLS  245 (269)
T ss_pred             HHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence                1234577785 4889999999999999999887655    36899999999999999999988877766444

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.58  E-value=2.6e-14  Score=128.74  Aligned_cols=157  Identities=16%  Similarity=0.184  Sum_probs=107.1

Q ss_pred             CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHH
Q 017844           33 DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ  111 (365)
Q Consensus        33 ~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (365)
                      +.|. ++|+||||||||.+++++|+++..+   .+.+++.++                     .    +.........++
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~---~i~vsa~eL---------------------~----sk~vGEsEk~IR  197 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE---PIVMSAGEL---------------------E----SENAGEPGKLIR  197 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC---eEEEEHHHh---------------------h----cCcCCcHHHHHH
Confidence            3444 9999999999999999999987432   122222111                     1    111122334577


Q ss_pred             HHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-----------H-HHHHHHHHhh--------------hcCceeEEE
Q 017844          112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------A-QHSLRRTMEK--------------YSASCRLIL  165 (365)
Q Consensus       112 ~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-----------~-~~~Ll~~le~--------------~~~~~~~Il  165 (365)
                      +.+........    ..+.+.||+|||+|.+.+.           . ...|+..++.              ....+.+|.
T Consensus       198 ~~F~~A~~~a~----~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIa  273 (413)
T PLN00020        198 QRYREAADIIK----KKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIV  273 (413)
T ss_pred             HHHHHHHHHhh----ccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEE
Confidence            77776654321    1346689999999976421           1 1356666553              234577899


Q ss_pred             EecCCCcccHHHhc--cceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q 017844          166 CCNSSSKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS  224 (365)
Q Consensus       166 ~t~~~~~l~~~l~s--R~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~  224 (365)
                      +||+++.+++++++  |+... +..|+.+++.+|++.++++.++  +...+..|+....|-
T Consensus       274 TTNrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq  331 (413)
T PLN00020        274 TGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQ  331 (413)
T ss_pred             eCCCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCC
Confidence            99999999999999  77543 4579999999999998887654  578888899887764

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=5.7e-14  Score=134.19  Aligned_cols=205  Identities=19%  Similarity=0.278  Sum_probs=131.3

Q ss_pred             CcccccCCCCCC----------ccccCHHHHHHHHHHHHc----CCC--CeEEEECCCCCcHHHHHHHHHHHhcCCCCcc
Q 017844            2 LWVDKYRPKTLD----------QVIVHQDIAQNLKKLVTE----QDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEK   65 (365)
Q Consensus         2 ~w~~k~rP~~~~----------~iig~~~~~~~l~~~l~~----~~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~   65 (365)
                      || .|+.+.+|+          +.+|-+++++++.+.+.=    |..  +-++|+||||+|||++++.||+.|..... .
T Consensus       391 PW-gk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf-R  468 (906)
T KOG2004|consen  391 PW-GKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF-R  468 (906)
T ss_pred             CC-CCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE-E
Confidence            56 555565553          668899999999988852    222  22999999999999999999998744321 1


Q ss_pred             ceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-
Q 017844           66 VKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-  144 (365)
Q Consensus        66 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-  144 (365)
                      +.+.|..          ++  ..+..... .|...-.|     .+-+.++...          -...+++|||+|++.. 
T Consensus       469 fSvGG~t----------Dv--AeIkGHRR-TYVGAMPG-----kiIq~LK~v~----------t~NPliLiDEvDKlG~g  520 (906)
T KOG2004|consen  469 FSVGGMT----------DV--AEIKGHRR-TYVGAMPG-----KIIQCLKKVK----------TENPLILIDEVDKLGSG  520 (906)
T ss_pred             Eeccccc----------cH--Hhhcccce-eeeccCCh-----HHHHHHHhhC----------CCCceEEeehhhhhCCC
Confidence            1111110          00  00111000 11111111     1223333332          2336899999999853 


Q ss_pred             ---HHHHHHHHHHhh-------------h--cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHH---
Q 017844          145 ---EAQHSLRRTMEK-------------Y--SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK---  203 (365)
Q Consensus       145 ---~~~~~Ll~~le~-------------~--~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~---  203 (365)
                         +-..+||+.|+-             +  -..+.||+++|..+.+++++++|..+|+++.+..++-.+|..+++-   
T Consensus       521 ~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a  600 (906)
T KOG2004|consen  521 HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQA  600 (906)
T ss_pred             CCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHH
Confidence               234577877752             0  1357799999999999999999999999999999999998877653   


Q ss_pred             --H-----cCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Q 017844          204 --K-----EGLQLPSGFATRLAEKSN--RSLRRAILSFETCR  236 (365)
Q Consensus       204 --~-----~~~~i~~~~~~~i~~~~~--g~lr~ai~~l~~~~  236 (365)
                        .     +.++++++++..+.+...  -.+|.+...+++++
T Consensus       601 ~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~  642 (906)
T KOG2004|consen  601 LKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC  642 (906)
T ss_pred             HHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence              2     346789999888877432  34565555555443

>PRK06585 holA DNA polymerase III subunit delta; Reviewed

Probab=99.57  E-value=8.5e-13  Score=122.78  Aligned_cols=282  Identities=13%  Similarity=0.097  Sum_probs=187.2

Q ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHH
Q 017844           33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE  112 (365)
Q Consensus        33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (365)
                      ..|.++|||+........++.+.+.+..+.....  +              .          ..+...+...    ...+
T Consensus        19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~f--n--------------~----------~~~~~~e~~~----~~~~   68 (343)
T PRK06585         19 KIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPF--A--------------V----------VRLDGDDLDA----DPAR   68 (343)
T ss_pred             CCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCc--c--------------e----------eeccHHHhhc----CHHH
Confidence            4445999999998888888888776533221100  0              0          1111111100    1234


Q ss_pred             HHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc---ccHHHh--ccceeEEec
Q 017844          113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK---VTEAIR--SRCLNIRIN  187 (365)
Q Consensus       113 ~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~---l~~~l~--sR~~~i~~~  187 (365)
                      ++.. +...++    .+.+++|++.+.+   ....+.|..+++.+++.+.+|+.+...++   +...+.  .....+.+.
T Consensus        69 ~~~~-~~t~sl----F~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~  140 (343)
T PRK06585         69 LEDE-ANAISL----FGGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCY  140 (343)
T ss_pred             HHHH-HhCCCC----CCCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecC
Confidence            4443 333443    5677899999654   34456788888887777777776654432   222221  234578899


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---CCCCCC--CCCCCCHHHHHHHHHH
Q 017844          188 SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY---PFKDNQ--AIPAMDWEEFVFEIAS  262 (365)
Q Consensus       188 ~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~---~~~~~~--~~~~~~~~~~i~~~~~  262 (365)
                      +++..++..|+..++++.|+.+++++++.+++.++||++.+.+.+++++.+.+   .++.++  .+.....+..+|++++
T Consensus       141 ~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~d  220 (343)
T PRK06585        141 ADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAAD  220 (343)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999998853   355444  3445566788999999


Q ss_pred             HHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----hC-----CH-------------HHHHHHHHHHHH
Q 017844          263 DIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK-----RL-----DA-------------EIKHEVCHWAAY  319 (365)
Q Consensus       263 ~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~-----~~-----~~-------------~~~~~~~~~~~~  319 (365)
                      +++.+    +..++...+..++..|.+|..|+..+.+++..     .+     +.             ..+..+.+.+..
T Consensus       221 ai~~~----~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~  296 (343)
T PRK06585        221 AALAG----DLAAFERALDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRR  296 (343)
T ss_pred             HHHCC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHh
Confidence            99985    44556666788889999999999988887664     11     11             112234566666


Q ss_pred             hhhh-hHHHHhhhcccCCCCCcccc-ccccc-cccchhcccC
Q 017844          320 YVSI-SFQILFIVPLVDFPSPLECS-AQAAY-IQPPLIRANS  358 (365)
Q Consensus       320 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~  358 (365)
                      |+.. +.+++-.  +.+.+...|++ .++.+ ++..+++++.
T Consensus       297 ~s~~~L~~~l~~--l~~~d~~lK~~~~~~~~~le~~i~~~~~  336 (343)
T PRK06585        297 WSLERLLRALER--LQAAELDCRRNPALADAIARRVLLSIAV  336 (343)
T ss_pred             CCHHHHHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            7655 3333332  44444444544 44455 8999888764

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.56  E-value=2.4e-13  Score=139.26  Aligned_cols=199  Identities=18%  Similarity=0.319  Sum_probs=128.5

Q ss_pred             CCccccCHHHHHHHHHHHHcC--------CC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844           12 LDQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (365)
Q Consensus        12 ~~~iig~~~~~~~l~~~l~~~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~   82 (365)
                      ++.++||+.+++.+...+...        +. .+++|+||+|+|||++|+++++.+++.....+.+++..+ ..      
T Consensus       567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~-~~------  639 (857)
T PRK10865        567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEF-ME------  639 (857)
T ss_pred             CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHh-hh------
Confidence            456899999999888887632        11 238999999999999999999988765544455555433 00      


Q ss_pred             eccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----
Q 017844           83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----  158 (365)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----  158 (365)
                           .......+...+...+....    ..+......        .++.|+++||++.+++..++.|+++|++..    
T Consensus       640 -----~~~~~~LiG~~pgy~g~~~~----g~l~~~v~~--------~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~  702 (857)
T PRK10865        640 -----KHSVSRLVGAPPGYVGYEEG----GYLTEAVRR--------RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG  702 (857)
T ss_pred             -----hhhHHHHhCCCCcccccchh----HHHHHHHHh--------CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC
Confidence                 00000011111111111111    111111111        234799999999999999999999998641    


Q ss_pred             -------CceeEEEEecCCC-------------------------cccHHHhccc-eeEEecCCCHHHHHHHHHHHHHH-
Q 017844          159 -------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK-  204 (365)
Q Consensus       159 -------~~~~~Il~t~~~~-------------------------~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~-  204 (365)
                             .++.||++||-..                         .+.|.+.+|+ .++.|.|++.+++.+++...+.+ 
T Consensus       703 ~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l  782 (857)
T PRK10865        703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL  782 (857)
T ss_pred             CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence                   2345777877521                         2457889999 79999999999999988776643 


Q ss_pred             ------cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Q 017844          205 ------EG--LQLPSGFATRLAEKSN---RSLRRAILSFET  234 (365)
Q Consensus       205 ------~~--~~i~~~~~~~i~~~~~---g~lr~ai~~l~~  234 (365)
                            .|  +.+++++++.|++..-   -..|..-+.++.
T Consensus       783 ~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~  823 (857)
T PRK10865        783 YKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQ  823 (857)
T ss_pred             HHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHH
Confidence                  23  4679999999998542   134555444443

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.56  E-value=2.6e-13  Score=124.09  Aligned_cols=222  Identities=14%  Similarity=0.150  Sum_probs=126.9

Q ss_pred             CCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceeccccc
Q 017844           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTT   88 (365)
Q Consensus        12 ~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~   88 (365)
                      |..++||++++..+...+-.....|++|.|++|+||||+++++++.+ .+..+.+.   ..++.+|...   |..|  ..
T Consensus         3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~--r~   76 (337)
T TIGR02030         3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL-PEIKAVAG---CPFNSSPSDPEMMCEEV--RI   76 (337)
T ss_pred             ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh-cccccccC---CCCCCCCCCccccChHH--hh
Confidence            78899999999887666556666779999999999999999999854 22222111   1111222221   2222  11


Q ss_pred             cc-----------cccceecCCC---CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844           89 LS-----------SANHVELSPS---DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (365)
Q Consensus        89 ~~-----------~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l  154 (365)
                      ..           ...+++ .+.   +........+...+..-......+.-...+..++++||++.+++..|..|++.|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~-lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l  155 (337)
T TIGR02030        77 RVDSQEPLSIIKKPVPVVD-LPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVA  155 (337)
T ss_pred             hhhcccccccccCCCCcCC-CCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHH
Confidence            00           001122 111   111111111111111100000001112234579999999999999999999999


Q ss_pred             hhhc-----------CceeEEEEecC-CC--cccHHHhccce-eEEecCCCH-HHHHHHHHHHHH---------------
Q 017844          155 EKYS-----------ASCRLILCCNS-SS--KVTEAIRSRCL-NIRINSPTE-EQIVKVLEFIAK---------------  203 (365)
Q Consensus       155 e~~~-----------~~~~~Il~t~~-~~--~l~~~l~sR~~-~i~~~~~~~-~~~~~iL~~~~~---------------  203 (365)
                      ++..           ...+|+++++. +.  .+.+++.+|+. .+.+..++. ++..+++++...               
T Consensus       156 ~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e  235 (337)
T TIGR02030       156 ASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTE  235 (337)
T ss_pred             HhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhh
Confidence            7631           12334554443 32  58889999995 677777765 666666655211               


Q ss_pred             --------------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHhcCC
Q 017844          204 --------------KEGLQLPSGFATRLAEKS---NR-SLRRAILSFETCRVQQY  240 (365)
Q Consensus       204 --------------~~~~~i~~~~~~~i~~~~---~g-~lr~ai~~l~~~~~~~~  240 (365)
                                    -..+.+++++++++++.+   +. +.|..+.++..+.+.+.
T Consensus       236 ~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa  290 (337)
T TIGR02030       236 QEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA  290 (337)
T ss_pred             hhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence                          134568888888887732   33 57888888876555443

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.2e-13  Score=116.77  Aligned_cols=161  Identities=22%  Similarity=0.361  Sum_probs=112.8

Q ss_pred             CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      -++.++-|-+-.++.++++++-           | ..|. +++|||||||||.+++++|+.-   ....+.+.|.+|   
T Consensus       152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~firvvgsef---  225 (408)
T KOG0727|consen  152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF---  225 (408)
T ss_pred             ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHH---
Confidence            3677888877777777777641           2 2233 9999999999999999998842   223334444333   


Q ss_pred             CCCcceecccccccccccee-cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------H
Q 017844           77 AGSRNIDLELTTLSSANHVE-LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------R  144 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~  144 (365)
                                        +. +..     .....+++.++....+         .+.|++|||+|.+.           .
T Consensus       226 ------------------vqkylg-----egprmvrdvfrlaken---------apsiifideidaiatkrfdaqtgadr  273 (408)
T KOG0727|consen  226 ------------------VQKYLG-----EGPRMVRDVFRLAKEN---------APSIIFIDEIDAIATKRFDAQTGADR  273 (408)
T ss_pred             ------------------HHHHhc-----cCcHHHHHHHHHHhcc---------CCcEEEeehhhhHhhhhccccccccH
Confidence                              11 111     1112466666655443         34799999999763           4


Q ss_pred             HHHHHHHHHHhh-----hcCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCC
Q 017844          145 EAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQ  208 (365)
Q Consensus       145 ~~~~~Ll~~le~-----~~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~  208 (365)
                      +.|..|+.++..     ...++++|++||..+.++|++.+-.   ..|+|+-|+..+.+-+...+..+-++.
T Consensus       274 evqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls  345 (408)
T KOG0727|consen  274 EVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS  345 (408)
T ss_pred             HHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence            566677777764     3467999999999999999998754   379999999999988888888776654

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.56  E-value=2.4e-13  Score=123.97  Aligned_cols=228  Identities=15%  Similarity=0.192  Sum_probs=124.0

Q ss_pred             CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCcc-ceeccccceecCCCcceeccc
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEK-VKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~-i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      .|..|++++||+++++.+...+-....+|++|+|+||+||||+++++++.+.+..... ..+++......|+...... .
T Consensus         3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~-~   81 (334)
T PRK13407          3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSS-T   81 (334)
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccC-C
Confidence            5788999999999999887554333356799999999999999999999663322110 0000000000010000000 0


Q ss_pred             ccccc-ccceec--CCCCcCccchhHHHHHHHHHHhcCCC---CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc--
Q 017844           87 TTLSS-ANHVEL--SPSDAGFQDRYVVQEVIKEMAKNRPI---DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS--  158 (365)
Q Consensus        87 ~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~--  158 (365)
                      ..... ..+..+  ...+........+...+.   .....   +.-......++++||++.+++..++.|++.|++..  
T Consensus        82 ~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~---~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~  158 (334)
T PRK13407         82 TMIERPTPVVDLPLGVTEDRVVGALDIERALT---RGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENV  158 (334)
T ss_pred             cccccCCccccCCCCCCcceeecchhhhhhhh---cCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeE
Confidence            00000 000111  001111111111111111   11000   00012334699999999999999999999998642  


Q ss_pred             ---------CceeEEEEecC-C-C-cccHHHhccce-eEEecCCCH-HHHHHHHHHHHHH--------------------
Q 017844          159 ---------ASCRLILCCNS-S-S-KVTEAIRSRCL-NIRINSPTE-EQIVKVLEFIAKK--------------------  204 (365)
Q Consensus       159 ---------~~~~~Il~t~~-~-~-~l~~~l~sR~~-~i~~~~~~~-~~~~~iL~~~~~~--------------------  204 (365)
                               ....|+++++. + + .+.+++.+||. .+.+.++.. ++..+++.+....                    
T Consensus       159 v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (334)
T PRK13407        159 VEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRG  238 (334)
T ss_pred             EEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHH
Confidence                     12334444433 2 2 58889999985 677777766 6666666553211                    


Q ss_pred             ---------cCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcC
Q 017844          205 ---------EGLQLPSGFATRLAEKS----NRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       205 ---------~~~~i~~~~~~~i~~~~----~g~lr~ai~~l~~~~~~~  239 (365)
                               ..+.++++.++++++.+    ..+.|..+.++..+...+
T Consensus       239 ~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A  286 (334)
T PRK13407        239 RILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALA  286 (334)
T ss_pred             HHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence                     23567777777777632    236777777666554443

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.2e-13  Score=136.08  Aligned_cols=197  Identities=19%  Similarity=0.357  Sum_probs=133.3

Q ss_pred             CccccCHHHHHHHHHHHHc-------CCCC--eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           13 DQVIVHQDIAQNLKKLVTE-------QDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~-------~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      ..++||++++..+..+++.       .+-|  .++|.||+|+|||.+|+++|..|++.....+.++..+|+.        
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E--------  562 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME--------  562 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH--------
Confidence            3578999999999998863       1222  3899999999999999999999998887778787766610        


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----  158 (365)
                          ..+....+.-.|.-.|+.......+.    ..        ..++.|+++||+++-.++.++.|++.|++-.     
T Consensus       563 ----kHsVSrLIGaPPGYVGyeeGG~LTEa----VR--------r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~  626 (786)
T COG0542         563 ----KHSVSRLIGAPPGYVGYEEGGQLTEA----VR--------RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ  626 (786)
T ss_pred             ----HHHHHHHhCCCCCCceeccccchhHh----hh--------cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC
Confidence                00111111111111122221112121    22        2346899999999999999999999998632     


Q ss_pred             ------CceeEEEEecCCC----------------------------cccHHHhccce-eEEecCCCHHHHHHHHHHHHH
Q 017844          159 ------ASCRLILCCNSSS----------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK  203 (365)
Q Consensus       159 ------~~~~~Il~t~~~~----------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~  203 (365)
                            .++.+|+|||--.                            .+.|.++.|+. +|.|.+++.+.+.+|+...+.
T Consensus       627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~  706 (786)
T COG0542         627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLN  706 (786)
T ss_pred             CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHH
Confidence                  3566788877221                            14567778886 999999999999998776554


Q ss_pred             -------HcCC--CCCHHHHHHHHHHcC---CCHHHHHHHHH
Q 017844          204 -------KEGL--QLPSGFATRLAEKSN---RSLRRAILSFE  233 (365)
Q Consensus       204 -------~~~~--~i~~~~~~~i~~~~~---g~lr~ai~~l~  233 (365)
                             +.++  .+++++.++|++.+-   ...|-+.+.++
T Consensus       707 ~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq  748 (786)
T COG0542         707 RLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQ  748 (786)
T ss_pred             HHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHH
Confidence                   2344  678999999999642   23344444443

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=2e-13  Score=133.49  Aligned_cols=217  Identities=18%  Similarity=0.208  Sum_probs=141.9

Q ss_pred             CCCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~-----------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      +-+|.|+.|.++++..|.+.+.           .-++|. +||+||||||||.||+++|++..   ...+.+++.+    
T Consensus       307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg---VPF~svSGSE----  379 (774)
T KOG0731|consen  307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSVSGSE----  379 (774)
T ss_pred             CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC---CceeeechHH----
Confidence            3579999999999998888774           235666 99999999999999999999752   2223333333    


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------------
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------  144 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------------  144 (365)
                                       ++++....    ....+++++......         .+.|++|||+|.+..            
T Consensus       380 -----------------FvE~~~g~----~asrvr~lf~~ar~~---------aP~iifideida~~~~r~G~~~~~~~~  429 (774)
T KOG0731|consen  380 -----------------FVEMFVGV----GASRVRDLFPLARKN---------APSIIFIDEIDAVGRKRGGKGTGGGQD  429 (774)
T ss_pred             -----------------HHHHhccc----chHHHHHHHHHhhcc---------CCeEEEecccccccccccccccCCCCh
Confidence                             34322111    122466766654433         347999999987632            


Q ss_pred             H---HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhcc--c-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017844          145 E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (365)
Q Consensus       145 ~---~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~  216 (365)
                      +   ..|.|+--|+..  ..++.++.+||.++-+++++++-  + ..+.+..|+......|++.++.+.....++..+..
T Consensus       430 e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~  509 (774)
T KOG0731|consen  430 EREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK  509 (774)
T ss_pred             HHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH
Confidence            1   234444444433  34577777888888899999874  4 37999999999999999999887777656677777


Q ss_pred             HHHHcCCCHHHH-HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHH
Q 017844          217 LAEKSNRSLRRA-ILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASD  263 (365)
Q Consensus       217 i~~~~~g~lr~a-i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  263 (365)
                      ++..+.|....- .|+++.++..+..- ....+...+.+..+..++..
T Consensus       510 ~a~~t~gf~gadl~n~~neaa~~a~r~-~~~~i~~~~~~~a~~Rvi~G  556 (774)
T KOG0731|consen  510 LASLTPGFSGADLANLCNEAALLAARK-GLREIGTKDLEYAIERVIAG  556 (774)
T ss_pred             HHhcCCCCcHHHHHhhhhHHHHHHHHh-ccCccchhhHHHHHHHHhcc
Confidence            998887755443 34444444333211 12234455555555544433

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.55  E-value=1.2e-12  Score=116.83  Aligned_cols=104  Identities=18%  Similarity=0.254  Sum_probs=80.2

Q ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhhhc----------------CceeEEEEecCCC-----cccHHHhccceeEEecCCC
Q 017844          132 KVLVLNEVDKLSREAQHSLRRTMEKYS----------------ASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPT  190 (365)
Q Consensus       132 ~vliiDE~~~L~~~~~~~Ll~~le~~~----------------~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~  190 (365)
                      .++++||++.++++.++.|+..|++..                ++.++|+++|...     .+.+++.+||..+.+..|+
T Consensus       107 ~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~  186 (262)
T TIGR02640       107 FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPD  186 (262)
T ss_pred             CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCC
Confidence            599999999999999999999997521                2456788888653     4688999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----------CCHHHHHHHHHHHHhcCC
Q 017844          191 EEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN----------RSLRRAILSFETCRVQQY  240 (365)
Q Consensus       191 ~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~----------g~lr~ai~~l~~~~~~~~  240 (365)
                      .++..++++...     .++++.++.+++...          -.+|.++.+...+...+.
T Consensus       187 ~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~~  241 (262)
T TIGR02640       187 IDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQDI  241 (262)
T ss_pred             HHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcCC
Confidence            999999998754     356777777766321          137777777777766543

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.6e-13  Score=131.71  Aligned_cols=196  Identities=15%  Similarity=0.203  Sum_probs=125.7

Q ss_pred             ccccCHHHHHHHHHHHH------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844           14 QVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      +.+|-+++++++.+++.      .-+.|-++|+||||+|||++++.||+.+..+.. .+.+.|..-          .  .
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv-R~sLGGvrD----------E--A  390 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV-RISLGGVRD----------E--A  390 (782)
T ss_pred             cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE-EEecCcccc----------H--H
Confidence            45788899988888774      122344999999999999999999998743321 111111100          0  0


Q ss_pred             ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhh------
Q 017844           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTMEKY------  157 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~----~~~~Ll~~le~~------  157 (365)
                      .+.... -.|..+-    .+    .++..+...       .....|++|||+|.|+.+    -..+||..|+--      
T Consensus       391 EIRGHR-RTYIGam----PG----rIiQ~mkka-------~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~  454 (782)
T COG0466         391 EIRGHR-RTYIGAM----PG----KIIQGMKKA-------GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFS  454 (782)
T ss_pred             Hhcccc-ccccccC----Ch----HHHHHHHHh-------CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchh
Confidence            000000 0011111    11    222222221       123469999999999643    346788888510      


Q ss_pred             ---------cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHH-----HHcC-----CCCCHHHHHHHH
Q 017844          158 ---------SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA-----KKEG-----LQLPSGFATRLA  218 (365)
Q Consensus       158 ---------~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~-----~~~~-----~~i~~~~~~~i~  218 (365)
                               -.++.||.|+|..+.++.++++|..+|++..++.++-..|.++++     .+.|     +.++++++..|+
T Consensus       455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI  534 (782)
T COG0466         455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII  534 (782)
T ss_pred             hccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence                     146779999999999999999999999999999999998887655     2333     468999999998


Q ss_pred             HHcC--CCHHHHHHHHHHHHhc
Q 017844          219 EKSN--RSLRRAILSFETCRVQ  238 (365)
Q Consensus       219 ~~~~--g~lr~ai~~l~~~~~~  238 (365)
                      +...  -.+|.+...+..+|..
T Consensus       535 ~~YTREAGVR~LeR~i~ki~RK  556 (782)
T COG0466         535 RYYTREAGVRNLEREIAKICRK  556 (782)
T ss_pred             HHHhHhhhhhHHHHHHHHHHHH
Confidence            8532  3456655555555443

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.54  E-value=2.2e-13  Score=136.65  Aligned_cols=181  Identities=19%  Similarity=0.296  Sum_probs=118.6

Q ss_pred             ccccCHHHHHHHHHHHHc--------CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844           14 QVIVHQDIAQNLKKLVTE--------QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~--------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      .++||+++++.+..++..        +++ .+++|+||+|||||++|+.+|+.+.+   ..+.+++..+....     .+
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~---~~i~id~se~~~~~-----~~  530 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMSEYMERH-----TV  530 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC---CcEEeechhhcccc-----cH
Confidence            478999999999988862        222 24999999999999999999998732   23344443330000     00


Q ss_pred             cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc------
Q 017844           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~------  158 (365)
                             ...+...+.-.+......+.+   .+ .        ..++.|+++||++.++++.++.|++.|++..      
T Consensus       531 -------~~LiG~~~gyvg~~~~g~L~~---~v-~--------~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g  591 (758)
T PRK11034        531 -------SRLIGAPPGYVGFDQGGLLTD---AV-I--------KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNG  591 (758)
T ss_pred             -------HHHcCCCCCcccccccchHHH---HH-H--------hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCC
Confidence                   001111111111111111111   11 1        1234799999999999999999999998631      


Q ss_pred             -----CceeEEEEecCC-------------------------CcccHHHhccce-eEEecCCCHHHHHHHHHHHHH----
Q 017844          159 -----ASCRLILCCNSS-------------------------SKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAK----  203 (365)
Q Consensus       159 -----~~~~~Il~t~~~-------------------------~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~----  203 (365)
                           .++.||++||..                         ..+.|.+..|+. ++.|++++.+++.+++...+.    
T Consensus       592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~  671 (758)
T PRK11034        592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA  671 (758)
T ss_pred             ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence                 355688888722                         025588889985 899999999999999876554    


Q ss_pred             ---HcCC--CCCHHHHHHHHHHc
Q 017844          204 ---KEGL--QLPSGFATRLAEKS  221 (365)
Q Consensus       204 ---~~~~--~i~~~~~~~i~~~~  221 (365)
                         ..|+  .++++++++|++..
T Consensus       672 ~l~~~~i~l~~~~~~~~~l~~~~  694 (758)
T PRK11034        672 QLDQKGVSLEVSQEARDWLAEKG  694 (758)
T ss_pred             HHHHCCCCceECHHHHHHHHHhC
Confidence               2344  67899999999753

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.53  E-value=4e-13  Score=136.18  Aligned_cols=182  Identities=20%  Similarity=0.306  Sum_probs=119.0

Q ss_pred             CccccCHHHHHHHHHHHHcC--------CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~--------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      ..++||+++++.+...+...        ++. +++|+||+|||||++|+++|+.+.++   .+.+++.++ .       +
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~---~~~~d~se~-~-------~  522 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH---LERFDMSEY-M-------E  522 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC---eEEEeCchh-h-------h
Confidence            35789999999888887631        222 38999999999999999999977432   233333322 0       0


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----  158 (365)
                      .    ......+.-.+...+....   ..+...+ ..        .++.|+++||++.+.++.++.|+++|++..     
T Consensus       523 ~----~~~~~lig~~~gyvg~~~~---~~l~~~~-~~--------~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~  586 (731)
T TIGR02639       523 K----HTVSRLIGAPPGYVGFEQG---GLLTEAV-RK--------HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNN  586 (731)
T ss_pred             c----ccHHHHhcCCCCCcccchh---hHHHHHH-Hh--------CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCC
Confidence            0    0000001111111111111   1122222 21        234899999999999999999999998631     


Q ss_pred             ------CceeEEEEecCCC-------------------------cccHHHhccce-eEEecCCCHHHHHHHHHHHHHH--
Q 017844          159 ------ASCRLILCCNSSS-------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK--  204 (365)
Q Consensus       159 ------~~~~~Il~t~~~~-------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~--  204 (365)
                            .++.||++||-..                         .+.|.+.+|+. ++.|.+++.+++.++++..+.+  
T Consensus       587 g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~  666 (731)
T TIGR02639       587 GRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELS  666 (731)
T ss_pred             CcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence                  3455777776431                         15678888984 8999999999999999877653  


Q ss_pred             -----cC--CCCCHHHHHHHHHHc
Q 017844          205 -----EG--LQLPSGFATRLAEKS  221 (365)
Q Consensus       205 -----~~--~~i~~~~~~~i~~~~  221 (365)
                           .|  +.++++++++|++.+
T Consensus       667 ~~l~~~~~~l~i~~~a~~~La~~~  690 (731)
T TIGR02639       667 KQLNEKNIKLELTDDAKKYLAEKG  690 (731)
T ss_pred             HHHHhCCCeEEeCHHHHHHHHHhC
Confidence                 22  568899999999853

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.51  E-value=1.2e-12  Score=119.61  Aligned_cols=229  Identities=15%  Similarity=0.201  Sum_probs=133.0

Q ss_pred             ccCCC-CCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---c
Q 017844            6 KYRPK-TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---N   81 (365)
Q Consensus         6 k~rP~-~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~   81 (365)
                      +-+|. .|++++||++++..|...+.+....+++|.||+|+||||+++.++..+.+...-    .+..|+.+|...   +
T Consensus         9 ~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~----~~~pf~~~p~~p~~~~   84 (350)
T CHL00081          9 KERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVV----KDDPFNSHPSDPELMS   84 (350)
T ss_pred             ccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCcc----CCCCCCCCCCChhhhc
Confidence            34555 799999999999999988888777789999999999999999998865432211    011221222211   1


Q ss_pred             eecccccccc----------ccceecC--CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHH
Q 017844           82 IDLELTTLSS----------ANHVELS--PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHS  149 (365)
Q Consensus        82 ~~~~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~  149 (365)
                      .++ +.....          ...+.+.  ..+........+...+.........+.-...+..++++||++.+++..|..
T Consensus        85 ~~~-~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~  163 (350)
T CHL00081         85 DEV-REAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDI  163 (350)
T ss_pred             hhh-hhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHH
Confidence            111 000000          0001100  011000111111111111000000001123345799999999999999999


Q ss_pred             HHHHHhhhc-----------CceeEEEEecCC-C--cccHHHhccce-eEEecCCC-HHHHHHHHHHHHH----------
Q 017844          150 LRRTMEKYS-----------ASCRLILCCNSS-S--KVTEAIRSRCL-NIRINSPT-EEQIVKVLEFIAK----------  203 (365)
Q Consensus       150 Ll~~le~~~-----------~~~~~Il~t~~~-~--~l~~~l~sR~~-~i~~~~~~-~~~~~~iL~~~~~----------  203 (365)
                      |++.|++..           ...+|+++++.. .  .+.+++.+|+. .+.+..++ .++..+++++...          
T Consensus       164 LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~  243 (350)
T CHL00081        164 LLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFRE  243 (350)
T ss_pred             HHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhh
Confidence            999997621           123455555433 2  58899999985 78888887 4666666665321          


Q ss_pred             -------------------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHhcC
Q 017844          204 -------------------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETCRVQQ  239 (365)
Q Consensus       204 -------------------~~~~~i~~~~~~~i~~~~---~-g~lr~ai~~l~~~~~~~  239 (365)
                                         -..+.++++.++++++.+   + -++|..+.++..+.+.+
T Consensus       244 ~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A  302 (350)
T CHL00081        244 KYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA  302 (350)
T ss_pred             hhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence                               024678888888887743   2 36888888877654443

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=99.50  E-value=1.6e-13  Score=137.94  Aligned_cols=202  Identities=20%  Similarity=0.340  Sum_probs=141.6

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcC------------C--CCe--EEEECCCCCcHHHHHHHHHHHhcCCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ------------D--CPH--LLFYGPPGSGKKTLIMALLRQVFGPGAE   64 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~------------~--~~~--lll~Gp~G~GKTtla~~la~~l~~~~~~   64 (365)
                      +.|.+||+|.+..++.|+......+..|++..            .  ...  ++++||+|+|||+.+.+.|+++.-.   
T Consensus       308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~---  384 (871)
T KOG1968|consen  308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFK---  384 (871)
T ss_pred             cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccc---
Confidence            36999999999999999877777777777532            1  111  4899999999999999999865211   


Q ss_pred             cceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCC---------CCCCCCCceEEE
Q 017844           65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI---------DTKGKRGFKVLV  135 (365)
Q Consensus        65 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~vli  135 (365)
                                                   .++.++++.+...  .+.+.+..+.....+         ........-||+
T Consensus       385 -----------------------------v~E~Nas~~RSk~--~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil  433 (871)
T KOG1968|consen  385 -----------------------------VVEKNASDVRSKK--ELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLIL  433 (871)
T ss_pred             -----------------------------eeecCcccccccc--HHHhhhhccccccchhhhhcccccccccccceeEEE
Confidence                                         1222332222100  011111111100000         001223345999


Q ss_pred             EeCCCCCCH---HHHHHHHHHHhhhcCceeEEEEecCCCccc-HHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844          136 LNEVDKLSR---EAQHSLRRTMEKYSASCRLILCCNSSSKVT-EAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (365)
Q Consensus       136 iDE~~~L~~---~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~-~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~  211 (365)
                      +||+|.+..   .....+-.++++  ....+|++||+..-.. .++.+-|..++|..|+.+.+...+..++..+++.+++
T Consensus       434 ~devD~~~~~dRg~v~~l~~l~~k--s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~  511 (871)
T KOG1968|consen  434 MDEVDGMFGEDRGGVSKLSSLCKK--SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISD  511 (871)
T ss_pred             EeccccccchhhhhHHHHHHHHHh--ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCc
Confidence            999999876   334455555553  3567999999877533 3566667899999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844          212 GFATRLAEKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       212 ~~~~~i~~~~~g~lr~ai~~l~~~~~~  238 (365)
                      +.++.+...++||+|..++.|+.++..
T Consensus       512 ~~l~~~s~~~~~DiR~~i~~lq~~~~~  538 (871)
T KOG1968|consen  512 DVLEEISKLSGGDIRQIIMQLQFWSLS  538 (871)
T ss_pred             HHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence            999999999999999999999988554

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.50  E-value=1.3e-12  Score=128.39  Aligned_cols=209  Identities=17%  Similarity=0.140  Sum_probs=132.1

Q ss_pred             ccCCCCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844            6 KYRPKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus         6 k~rP~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      +.+..+|+.++|+....+.+.+.++.  ....+++|+|++||||+++|++|...........+.++|..+   +. ...+
T Consensus       189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~---~~-~~~~  264 (534)
T TIGR01817       189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL---SE-TLLE  264 (534)
T ss_pred             ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC---CH-HHHH
Confidence            45566899999998888777776654  223349999999999999999998754333333344444322   00 0000


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----  158 (365)
                              ...+....   +....          +.....+.....+..+++|||++.|+...|..|++.+++..     
T Consensus       265 --------~~lfg~~~---~~~~~----------~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~  323 (534)
T TIGR01817       265 --------SELFGHEK---GAFTG----------AIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVG  323 (534)
T ss_pred             --------HHHcCCCC---CccCC----------CCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECC
Confidence                    00000000   00000          00000000012234689999999999999999999998632     


Q ss_pred             ------CceeEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHHHHH----cC--CCCCHHHHH
Q 017844          159 ------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIAKK----EG--LQLPSGFAT  215 (365)
Q Consensus       159 ------~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~~~~----~~--~~i~~~~~~  215 (365)
                            .++++|++|+...       .+.+.+..|+.  .|.++|+.  .+++..++...+.+    .+  ..+++++++
T Consensus       324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~  403 (534)
T TIGR01817       324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR  403 (534)
T ss_pred             CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence                  2467888876542       35567777764  57777776  45666665555442    22  578999999


Q ss_pred             HHHHH-cCCCHHHHHHHHHHHHhcC
Q 017844          216 RLAEK-SNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       216 ~i~~~-~~g~lr~ai~~l~~~~~~~  239 (365)
                      .+.+. +.||+|++.+.++.++..+
T Consensus       404 ~L~~~~WPGNvrEL~~v~~~a~~~~  428 (534)
T TIGR01817       404 VLMSCKWPGNVRELENCLERTATLS  428 (534)
T ss_pred             HHHhCCCCChHHHHHHHHHHHHHhC
Confidence            99996 6999999999999887653

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK14700 recombination factor protein RarA; Provisional

Probab=99.48  E-value=7.7e-13  Score=116.34  Aligned_cols=205  Identities=14%  Similarity=0.075  Sum_probs=138.4

Q ss_pred             ceeEEEEecCCC--cccHHHhccceeEEecCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHH
Q 017844          160 SCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKE------GLQLPSGFATRLAEKSNRSLRRAILS  231 (365)
Q Consensus       160 ~~~~Il~t~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~------~~~i~~~~~~~i~~~~~g~lr~ai~~  231 (365)
                      .+.+|.+|+..+  .+.++|+|||+++.|.+++.+++..+|++.+..+      .+.+++++++.|++.++||.|.|+|.
T Consensus         8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~   87 (300)
T PRK14700          8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL   87 (300)
T ss_pred             cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence            456666666554  5889999999999999999999999999988742      36799999999999999999999999


Q ss_pred             HHHHHhcCC---C--CCCCC--------CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 017844          232 FETCRVQQY---P--FKDNQ--------AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLL  298 (365)
Q Consensus       232 l~~~~~~~~---~--~~~~~--------~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~  298 (365)
                      ||.++....   .  ++.+.        .+......+.-++++++..++-+..+-+.+.=++-.++..|.+|..|.+.+.
T Consensus        88 LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLi  167 (300)
T PRK14700         88 LERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRML  167 (300)
T ss_pred             HHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999654211   1  11111        0001111233456666666655555666777777788899999999999888


Q ss_pred             HHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhhhcccCCCCCccccccccc--cccchhcccCCCcccC
Q 017844          299 YELLKRLD---AEIKHEVCHWAAYYV----SISFQILFIVPLVDFPSPLECSAQAAY--IQPPLIRANSDPVALH  364 (365)
Q Consensus       299 ~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  364 (365)
                      ..-.+.+.   +.........+..++    .+-...|.++.+.-..+||.|++-.++  ....+=.-...||++|
T Consensus       168 i~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~A~~~v~~~~~~~VP~h  242 (300)
T PRK14700        168 CIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNIDVPQH  242 (300)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhcCCCCCChh
Confidence            87777543   333333333332222    222455565544445799999998888  2222333356778887

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.48  E-value=5.5e-12  Score=108.07  Aligned_cols=189  Identities=20%  Similarity=0.281  Sum_probs=125.0

Q ss_pred             ccCCCCCCccccCHHHHHHHHH----HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            6 KYRPKTLDQVIVHQDIAQNLKK----LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         6 k~rP~~~~~iig~~~~~~~l~~----~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      ...|..+++++|-+..++.|..    .+++....|+|++|++|||||++++++..++....-..                
T Consensus        20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRl----------------   83 (249)
T PF05673_consen   20 HPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRL----------------   83 (249)
T ss_pred             CCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceE----------------
Confidence            3456789999997766655544    44344444599999999999999999998764433211                


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHh----h
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-SREAQHSLRRTME----K  156 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L-~~~~~~~Ll~~le----~  156 (365)
                                   +++...+..     .+.+++..+...        ..+-||++|+...= .......|..+||    .
T Consensus        84 -------------Iev~k~~L~-----~l~~l~~~l~~~--------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~  137 (249)
T PF05673_consen   84 -------------IEVSKEDLG-----DLPELLDLLRDR--------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEA  137 (249)
T ss_pred             -------------EEECHHHhc-----cHHHHHHHHhcC--------CCCEEEEecCCCCCCCcHHHHHHHHHhcCcccc
Confidence                         222222221     133555554432        23469999997432 2334455555554    4


Q ss_pred             hcCceeEEEEecCCCccc-----------------------HHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCH-
Q 017844          157 YSASCRLILCCNSSSKVT-----------------------EAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS-  211 (365)
Q Consensus       157 ~~~~~~~Il~t~~~~~l~-----------------------~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~-  211 (365)
                      .|.|+.+..|+|...-+.                       -++.+|| ..+.|.+|+.++-.++++..+.+.|+.+++ 
T Consensus       138 ~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e  217 (249)
T PF05673_consen  138 RPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEE  217 (249)
T ss_pred             CCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence            577777777777433111                       1445676 489999999999999999999999999985 


Q ss_pred             ----HHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          212 ----GFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       212 ----~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                          +++..-....+.+.|.|-..++.+.
T Consensus       218 ~l~~~Al~wa~~rg~RSGRtA~QF~~~l~  246 (249)
T PF05673_consen  218 ELRQEALQWALRRGGRSGRTARQFIDDLA  246 (249)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence                4455555566679999988877664

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1e-12  Score=111.80  Aligned_cols=175  Identities=19%  Similarity=0.320  Sum_probs=117.8

Q ss_pred             CCCCccccCHHHHHHHHHHHH-----------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      .+++++-|-+..++.|.+++-           -| +.|. +++|||||+|||.+||+.|..-..           .|   
T Consensus       168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-----------TF---  233 (424)
T KOG0652|consen  168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA-----------TF---  233 (424)
T ss_pred             ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc-----------hH---
Confidence            478888898888888877762           12 2233 999999999999999999875311           11   


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HH
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE  145 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~  145 (365)
                                -.+..++.+.+...+.    ...+++.+.-..         ...+.|++|||+|.+.           .+
T Consensus       234 ----------LKLAgPQLVQMfIGdG----AkLVRDAFaLAK---------EkaP~IIFIDElDAIGtKRfDSek~GDRE  290 (424)
T KOG0652|consen  234 ----------LKLAGPQLVQMFIGDG----AKLVRDAFALAK---------EKAPTIIFIDELDAIGTKRFDSEKAGDRE  290 (424)
T ss_pred             ----------HHhcchHHHhhhhcch----HHHHHHHHHHhh---------ccCCeEEEEechhhhccccccccccccHH
Confidence                      2222233333222111    112344333222         3456899999999773           45


Q ss_pred             HHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844          146 AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (365)
Q Consensus       146 ~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i  217 (365)
                      .|..++.+|+..     ...+++|.+||..+-++|++.+..   ..|+|+-|+.+...++++-+.++-++. ++--++.+
T Consensus       291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeEL  369 (424)
T KOG0652|consen  291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEEL  369 (424)
T ss_pred             HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHH
Confidence            677777777653     346889999999999999987654   379999999999999999887766553 33347777


Q ss_pred             HHHcC
Q 017844          218 AEKSN  222 (365)
Q Consensus       218 ~~~~~  222 (365)
                      ++.++
T Consensus       370 aRsTd  374 (424)
T KOG0652|consen  370 ARSTD  374 (424)
T ss_pred             hhccc
Confidence            77654

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.1e-13  Score=117.98  Aligned_cols=176  Identities=22%  Similarity=0.278  Sum_probs=116.6

Q ss_pred             CCCccccCHHHHHHHHHHH----------HcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844           11 TLDQVIVHQDIAQNLKKLV----------TEQDCPH--LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l----------~~~~~~~--lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      .|+++.|-+.+++.|++++          ..++.|-  +||+||||+|||-||+++|.+...           .|     
T Consensus       131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----------TF-----  194 (439)
T KOG0739|consen  131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-----------TF-----  194 (439)
T ss_pred             chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-----------ce-----
Confidence            6999999999999999876          2344443  999999999999999999986521           11     


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------H----HH
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------E----AQ  147 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------~----~~  147 (365)
                              ..+++.+.+.    ..-......+.+++....         .+++.||+|||+|.+..       +    ..
T Consensus       195 --------FSvSSSDLvS----KWmGESEkLVknLFemAR---------e~kPSIIFiDEiDslcg~r~enEseasRRIK  253 (439)
T KOG0739|consen  195 --------FSVSSSDLVS----KWMGESEKLVKNLFEMAR---------ENKPSIIFIDEIDSLCGSRSENESEASRRIK  253 (439)
T ss_pred             --------EEeehHHHHH----HHhccHHHHHHHHHHHHH---------hcCCcEEEeehhhhhccCCCCCchHHHHHHH
Confidence                    1111111111    011112223444444433         34568999999998842       1    12


Q ss_pred             HHHHHHHhhh---cCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 017844          148 HSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR  223 (365)
Q Consensus       148 ~~Ll~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g  223 (365)
                      ..|+-.|...   ...+.++.+||-+..++.+|++|+. .|.++-|.........+-.+..-...+++..+..+++.++|
T Consensus       254 TEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG  333 (439)
T KOG0739|consen  254 TEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG  333 (439)
T ss_pred             HHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCC
Confidence            2344444432   2335556677777889999999996 88998888887777776655544556889999999998766

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.46  E-value=7.3e-13  Score=105.53  Aligned_cols=115  Identities=26%  Similarity=0.350  Sum_probs=77.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (365)
                      ++|+||||+|||++++.+++.+.   ...+.+++...                     .    +.........+.+.+..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~---------------------~----~~~~~~~~~~i~~~~~~   52 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSEL---------------------I----SSYAGDSEQKIRDFFKK   52 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHH---------------------H----TSSTTHHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc---ccccccccccc---------------------c----ccccccccccccccccc
Confidence            68999999999999999999762   11122222111                     0    00111122234455554


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCCCCHHH-----------HHHHHHHHhhhcC---ceeEEEEecCCCcccHHHh-ccc
Q 017844          117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREA-----------QHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIR-SRC  181 (365)
Q Consensus       117 ~~~~~~~~~~~~~~~~vliiDE~~~L~~~~-----------~~~Ll~~le~~~~---~~~~Il~t~~~~~l~~~l~-sR~  181 (365)
                      .....        ++.|++|||+|.+....           .+.|+..++....   ++.+|++||..+.+++++. +||
T Consensus        53 ~~~~~--------~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf  124 (132)
T PF00004_consen   53 AKKSA--------KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRF  124 (132)
T ss_dssp             HHHTS--------TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTS
T ss_pred             ccccc--------cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCC
Confidence            43321        35899999999997765           6788888887654   4889999999999999999 998


Q ss_pred             e-eEEec
Q 017844          182 L-NIRIN  187 (365)
Q Consensus       182 ~-~i~~~  187 (365)
                      . .++|+
T Consensus       125 ~~~i~~~  131 (132)
T PF00004_consen  125 DRRIEFP  131 (132)
T ss_dssp             EEEEEE-
T ss_pred             cEEEEcC
Confidence            6 56654

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.46  E-value=2.2e-12  Score=131.15  Aligned_cols=180  Identities=18%  Similarity=0.280  Sum_probs=118.8

Q ss_pred             CCCCCccccCHHHHHHHHHHHHc-----------C-CC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~~-----------~-~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~   75 (365)
                      ..+|+++.|.+.+++.++.++..           + .. .+++|+||||||||++++++++++..+   .+.+++..+  
T Consensus       174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~---~i~i~~~~i--  248 (733)
T TIGR01243       174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY---FISINGPEI--  248 (733)
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe---EEEEecHHH--
Confidence            35899999999999988887742           1 12 239999999999999999999976321   122222111  


Q ss_pred             cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------H
Q 017844           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------R  144 (365)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~  144 (365)
                                         .    +.........+++++.....         ..+.|++|||+|.+.           .
T Consensus       249 -------------------~----~~~~g~~~~~l~~lf~~a~~---------~~p~il~iDEid~l~~~r~~~~~~~~~  296 (733)
T TIGR01243       249 -------------------M----SKYYGESEERLREIFKEAEE---------NAPSIIFIDEIDAIAPKREEVTGEVEK  296 (733)
T ss_pred             -------------------h----cccccHHHHHHHHHHHHHHh---------cCCcEEEeehhhhhcccccCCcchHHH
Confidence                               0    00001111234444444332         234799999998764           2


Q ss_pred             HHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 017844          145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLA  218 (365)
Q Consensus       145 ~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~-~~~~~~i~  218 (365)
                      ..++.|+..++....  .+.+|.+||.++.+++++++  |+ ..+.|+.|+.++..++++....  +..+. +..++.++
T Consensus       297 ~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la  374 (733)
T TIGR01243       297 RVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLA  374 (733)
T ss_pred             HHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHH
Confidence            356678888876533  35566678888889999887  55 4799999999999999996554  33332 44578888


Q ss_pred             HHcCCCHHH
Q 017844          219 EKSNRSLRR  227 (365)
Q Consensus       219 ~~~~g~lr~  227 (365)
                      +.+.|-...
T Consensus       375 ~~t~G~~ga  383 (733)
T TIGR01243       375 EVTHGFVGA  383 (733)
T ss_pred             HhCCCCCHH
Confidence            888775443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=2.4e-12  Score=108.94  Aligned_cols=183  Identities=19%  Similarity=0.290  Sum_probs=117.2

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHc-----------C--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~   69 (365)
                      .++|-.-.+++-+-|-+...+.+++.++-           |  ....+++|||||+|||.+|++++..-.|.   .+.++
T Consensus       137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~---firvs  213 (404)
T KOG0728|consen  137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---FIRVS  213 (404)
T ss_pred             hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceE---EEEec
Confidence            35665555565556667778888887741           1  12229999999999999999999853221   11111


Q ss_pred             cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-------
Q 017844           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-------  142 (365)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L-------  142 (365)
                      |.+.                     +.    .+-......+++++-.....         .+.|+++||+|.+       
T Consensus       214 gsel---------------------vq----k~igegsrmvrelfvmareh---------apsiifmdeidsigs~r~e~  259 (404)
T KOG0728|consen  214 GSEL---------------------VQ----KYIGEGSRMVRELFVMAREH---------APSIIFMDEIDSIGSSRVES  259 (404)
T ss_pred             hHHH---------------------HH----HHhhhhHHHHHHHHHHHHhc---------CCceEeeecccccccccccC
Confidence            1111                     10    00001122355655544433         3479999999987       


Q ss_pred             ----CHHHHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCC
Q 017844          143 ----SREAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (365)
Q Consensus       143 ----~~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~  210 (365)
                          +.+.|..++.+++..     ..++++|++||..+-+++++.+-.   ..|+|++|+.+...++|+-+.++-++. -
T Consensus       260 ~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-r  338 (404)
T KOG0728|consen  260 GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-R  338 (404)
T ss_pred             CCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-c
Confidence                346677777777643     467899999999999999998754   379999999999999998776654331 0


Q ss_pred             HHHHHHHHHHcCC
Q 017844          211 SGFATRLAEKSNR  223 (365)
Q Consensus       211 ~~~~~~i~~~~~g  223 (365)
                      --.+..||+.-.|
T Consensus       339 gi~l~kiaekm~g  351 (404)
T KOG0728|consen  339 GINLRKIAEKMPG  351 (404)
T ss_pred             ccCHHHHHHhCCC
Confidence            0014555554443

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.8e-12  Score=115.76  Aligned_cols=186  Identities=24%  Similarity=0.292  Sum_probs=118.0

Q ss_pred             CCCCccccCHHHHHHHHHHHH----------cC---CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844           10 KTLDQVIVHQDIAQNLKKLVT----------EQ---DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~----------~~---~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~   75 (365)
                      .+|+|+-|-+.+++.+++.+-          .+   +.+ .+|++||||||||.+|+++|++..+..   +++.+.    
T Consensus        89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f---Inv~~s----  161 (386)
T KOG0737|consen   89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF---INVSVS----  161 (386)
T ss_pred             eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCc---ceeecc----
Confidence            368999999999999998762          11   112 399999999999999999999763322   111111    


Q ss_pred             cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------HH--
Q 017844           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------EA--  146 (365)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------~~--  146 (365)
                                  .+.+..        ++     .-+.+.+.+-.     ++..-.+.+++|||++.+..       ++  
T Consensus       162 ------------~lt~KW--------fg-----E~eKlv~AvFs-----lAsKl~P~iIFIDEvds~L~~R~s~dHEa~a  211 (386)
T KOG0737|consen  162 ------------NLTSKW--------FG-----EAQKLVKAVFS-----LASKLQPSIIFIDEVDSFLGQRRSTDHEATA  211 (386)
T ss_pred             ------------ccchhh--------HH-----HHHHHHHHHHh-----hhhhcCcceeehhhHHHHHhhcccchHHHHH
Confidence                        001000        01     01112222111     11233568999999986631       11  


Q ss_pred             --HHHHHHHHhh----hcCceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017844          147 --QHSLRRTMEK----YSASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (365)
Q Consensus       147 --~~~Ll~~le~----~~~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~  219 (365)
                        .+.|.-.-+.    ....+.+..+||.+..+++++.+|+ .+++++-|+.++..+||+-+++.+.++ ++-.+..++.
T Consensus       212 ~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~  290 (386)
T KOG0737|consen  212 MMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQ  290 (386)
T ss_pred             HHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHH
Confidence              1122222222    1223556667888999999999996 589999999999999999999988876 4556888888


Q ss_pred             HcCCC-HHHHHHHHH
Q 017844          220 KSNRS-LRRAILSFE  233 (365)
Q Consensus       220 ~~~g~-lr~ai~~l~  233 (365)
                      .++|- -++..+++.
T Consensus       291 ~t~GySGSDLkelC~  305 (386)
T KOG0737|consen  291 MTEGYSGSDLKELCR  305 (386)
T ss_pred             hcCCCcHHHHHHHHH
Confidence            88773 333333333

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.7e-12  Score=124.83  Aligned_cols=188  Identities=20%  Similarity=0.272  Sum_probs=123.7

Q ss_pred             CCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844           10 KTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~-----------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      .+|+|+.|.++++..+.+.+.           ++++|. ++++||||+|||.+|+++|++..-|.               
T Consensus       147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF---------------  211 (596)
T COG0465         147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF---------------  211 (596)
T ss_pred             cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc---------------
Confidence            479999999999988887764           246666 99999999999999999998652221               


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------------
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------  144 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------------  144 (365)
                               ...+..+++++-..-    ....+|+++.......         +.|++|||+|.+..             
T Consensus       212 ---------f~iSGS~FVemfVGv----GAsRVRdLF~qAkk~a---------P~IIFIDEiDAvGr~Rg~g~Gggnder  269 (596)
T COG0465         212 ---------FSISGSDFVEMFVGV----GASRVRDLFEQAKKNA---------PCIIFIDEIDAVGRQRGAGLGGGNDER  269 (596)
T ss_pred             ---------eeccchhhhhhhcCC----CcHHHHHHHHHhhccC---------CCeEEEehhhhcccccCCCCCCCchHH
Confidence                     223333444433221    1124677777655433         37999999997742             


Q ss_pred             -HHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017844          145 -EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (365)
Q Consensus       145 -~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~  218 (365)
                       ...|.|+-.|+-...  .+.++..||.++-+++++.+  |+ ..+.++.|+.....++++-++++..+. ++-.+..++
T Consensus       270 EQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iA  348 (596)
T COG0465         270 EQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIA  348 (596)
T ss_pred             HHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHh
Confidence             245566666665543  35555567777778888865  33 479999999999999999777655443 222244477


Q ss_pred             HHcCCCH-HHHHHHHHHH
Q 017844          219 EKSNRSL-RRAILSFETC  235 (365)
Q Consensus       219 ~~~~g~l-r~ai~~l~~~  235 (365)
                      +.+.|-. -...|++..+
T Consensus       349 r~tpGfsGAdL~nl~NEA  366 (596)
T COG0465         349 RGTPGFSGADLANLLNEA  366 (596)
T ss_pred             hhCCCcccchHhhhHHHH
Confidence            7665532 2334444433

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.45  E-value=2.1e-12  Score=128.72  Aligned_cols=192  Identities=18%  Similarity=0.276  Sum_probs=123.6

Q ss_pred             cCCCCCCccccCHHHHHHHHHHHHc-----------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844            7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (365)
Q Consensus         7 ~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~   74 (365)
                      ....+|+++.|.+..+..+...+..           +..+. ++|+||||+|||++++++++++..+   .+.+++..+ 
T Consensus       146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~---f~~is~~~~-  221 (644)
T PRK10733        146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDF-  221 (644)
T ss_pred             hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC---EEEEehHHh-
Confidence            3446788999988888777665531           23333 9999999999999999999976322   111222111 


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----------
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------  144 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----------  144 (365)
                                          .....   + .....+++.+.....         ..+.|++|||+|.+..          
T Consensus       222 --------------------~~~~~---g-~~~~~~~~~f~~a~~---------~~P~IifIDEiD~l~~~r~~~~~g~~  268 (644)
T PRK10733        222 --------------------VEMFV---G-VGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAGLGGGH  268 (644)
T ss_pred             --------------------HHhhh---c-ccHHHHHHHHHHHHh---------cCCcEEEehhHhhhhhccCCCCCCCc
Confidence                                11000   0 111134444444322         2457999999998732          


Q ss_pred             ----HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017844          145 ----EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (365)
Q Consensus       145 ----~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~  215 (365)
                          ...+.|+..|+...  ..+.+|.+||.++.+++++++  |+ ..+.|+.|+.+++.++++.++.+..+. ++..+.
T Consensus       269 ~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~  347 (644)
T PRK10733        269 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAA  347 (644)
T ss_pred             hHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHH
Confidence                13345555565443  346788889999999999986  77 489999999999999999988765432 122356


Q ss_pred             HHHHHcCC----CHHHHHHHHHHHH
Q 017844          216 RLAEKSNR----SLRRAILSFETCR  236 (365)
Q Consensus       216 ~i~~~~~g----~lr~ai~~l~~~~  236 (365)
                      .+++.+.|    |+..+++..-..+
T Consensus       348 ~la~~t~G~sgadl~~l~~eAa~~a  372 (644)
T PRK10733        348 IIARGTPGFSGADLANLVNEAALFA  372 (644)
T ss_pred             HHHhhCCCCCHHHHHHHHHHHHHHH
Confidence            78887777    6666665544433

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.44  E-value=3.4e-12  Score=103.28  Aligned_cols=137  Identities=29%  Similarity=0.416  Sum_probs=88.5

Q ss_pred             ccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccce
Q 017844           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (365)
Q Consensus        16 ig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (365)
                      +|++..+..+...+......+++++||+|+|||++++.+++.+.......+.+++..+                      
T Consensus         1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~----------------------   58 (151)
T cd00009           1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL----------------------   58 (151)
T ss_pred             CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh----------------------
Confidence            3677888888888876555669999999999999999999976422222122211110                      


Q ss_pred             ecCCCCcCccchhHHHHHHH----HHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh------cCceeEEE
Q 017844           96 ELSPSDAGFQDRYVVQEVIK----EMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------SASCRLIL  165 (365)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~------~~~~~~Il  165 (365)
                             ....  .......    .......    ...+..++++||++.+.......++..++..      ..++.+|+
T Consensus        59 -------~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~  125 (151)
T cd00009          59 -------LEGL--VVAELFGHFLVRLLFELA----EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIG  125 (151)
T ss_pred             -------hhhh--HHHHHhhhhhHhHHHHhh----ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEE
Confidence                   0000  0000000    0000000    1235589999999998777778888888875      35678888


Q ss_pred             EecCCC--cccHHHhccc-eeEEec
Q 017844          166 CCNSSS--KVTEAIRSRC-LNIRIN  187 (365)
Q Consensus       166 ~t~~~~--~l~~~l~sR~-~~i~~~  187 (365)
                      +++...  .+.+.+.+|+ ..+.++
T Consensus       126 ~~~~~~~~~~~~~~~~r~~~~i~~~  150 (151)
T cd00009         126 ATNRPLLGDLDRALYDRLDIRIVIP  150 (151)
T ss_pred             ecCccccCCcChhHHhhhccEeecC
Confidence            888777  6888999999 566665

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.44  E-value=4.2e-12  Score=119.27  Aligned_cols=176  Identities=20%  Similarity=0.261  Sum_probs=105.1

Q ss_pred             cccCHHHHHHHHHHHHc-------C---------CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844           15 VIVHQDIAQNLKKLVTE-------Q---------DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus        15 iig~~~~~~~l~~~l~~-------~---------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      ++||+++++.+..++..       +         ...+++|+||+|||||++|+.+++.+..+.   +.+++..+     
T Consensus        73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf---~~id~~~l-----  144 (412)
T PRK05342         73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF---AIADATTL-----  144 (412)
T ss_pred             eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc---eecchhhc-----
Confidence            78999999988766521       1         124599999999999999999998763321   11111110     


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------------
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------------  144 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------------  144 (365)
                                         ....+...   .+...+..+........ ....+.|++|||+|.++.              
T Consensus       145 -------------------~~~gyvG~---d~e~~l~~l~~~~~~~~-~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~  201 (412)
T PRK05342        145 -------------------TEAGYVGE---DVENILLKLLQAADYDV-EKAQRGIVYIDEIDKIARKSENPSITRDVSGE  201 (412)
T ss_pred             -------------------ccCCcccc---hHHHHHHHHHHhccccH-HHcCCcEEEEechhhhccccCCCCcCCCcccH
Confidence                               00000001   12222222211111100 123457999999999965              


Q ss_pred             HHHHHHHHHHhhhc---------------------CceeEEEEecCC------------------------------C--
Q 017844          145 EAQHSLRRTMEKYS---------------------ASCRLILCCNSS------------------------------S--  171 (365)
Q Consensus       145 ~~~~~Ll~~le~~~---------------------~~~~~Il~t~~~------------------------------~--  171 (365)
                      ..|++|++.|+...                     .++.||+..+-.                              .  
T Consensus       202 ~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~  281 (412)
T PRK05342        202 GVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGEL  281 (412)
T ss_pred             HHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHH
Confidence            37899999998421                     111222211100                              0  


Q ss_pred             ------------cccHHHhccce-eEEecCCCHHHHHHHHHH----HH-------HHcCC--CCCHHHHHHHHHHc
Q 017844          172 ------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEF----IA-------KKEGL--QLPSGFATRLAEKS  221 (365)
Q Consensus       172 ------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~----~~-------~~~~~--~i~~~~~~~i~~~~  221 (365)
                                  .+.|.+..|+. ++.|.+++.+++.+++..    ..       ...|+  .++++++++|++.+
T Consensus       282 ~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~  357 (412)
T PRK05342        282 LKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA  357 (412)
T ss_pred             HHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence                        03566677774 789999999999999872    22       23454  58899999999964

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=3.9e-12  Score=124.07  Aligned_cols=177  Identities=21%  Similarity=0.301  Sum_probs=120.5

Q ss_pred             CCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      .+|+++.|.+.++..++..+..           + +.+ .+||+||||||||.+|+++|.+...+   .+.+.+.     
T Consensus       239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~---fi~v~~~-----  310 (494)
T COG0464         239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSR---FISVKGS-----  310 (494)
T ss_pred             cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCe---EEEeeCH-----
Confidence            4788888888888777776631           1 223 39999999999999999999854211   1111110     


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HH
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------RE  145 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~  145 (365)
                                         ++...-.+ .....+++.+.....         ..+.|+++||+|.+.           ..
T Consensus       311 -------------------~l~sk~vG-esek~ir~~F~~A~~---------~~p~iiFiDEiDs~~~~r~~~~~~~~~r  361 (494)
T COG0464         311 -------------------ELLSKWVG-ESEKNIRELFEKARK---------LAPSIIFIDEIDSLASGRGPSEDGSGRR  361 (494)
T ss_pred             -------------------HHhccccc-hHHHHHHHHHHHHHc---------CCCcEEEEEchhhhhccCCCCCchHHHH
Confidence                               11111111 122245555555442         244799999999872           14


Q ss_pred             HHHHHHHHHh--hhcCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 017844          146 AQHSLRRTME--KYSASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQ-LPSGFATRLAE  219 (365)
Q Consensus       146 ~~~~Ll~~le--~~~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~-i~~~~~~~i~~  219 (365)
                      ..+.|+..++  +...++.+|.+||.++.+++++.+  |+. .+.|++|+.++..++++..+...+.. ..+-.++.+++
T Consensus       362 ~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~  441 (494)
T COG0464         362 VVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE  441 (494)
T ss_pred             HHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH
Confidence            5667777775  334567788889999999999999  885 89999999999999999988765553 34566777777


Q ss_pred             HcCC
Q 017844          220 KSNR  223 (365)
Q Consensus       220 ~~~g  223 (365)
                      .+.|
T Consensus       442 ~t~~  445 (494)
T COG0464         442 ITEG  445 (494)
T ss_pred             HhcC
Confidence            6665

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.2e-12  Score=117.88  Aligned_cols=157  Identities=24%  Similarity=0.390  Sum_probs=106.0

Q ss_pred             CCccccCHHHHHHHHHHHH--------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           12 LDQVIVHQDIAQNLKKLVT--------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        12 ~~~iig~~~~~~~l~~~l~--------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      |+++|-++...+.+.....        +..+.+++||||||+|||.+|+-||+.-           |.+|          
T Consensus       354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-----------GlDY----------  412 (630)
T KOG0742|consen  354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-----------GLDY----------  412 (630)
T ss_pred             cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc-----------CCce----------
Confidence            8999999988888877653        2334569999999999999999999842           2111          


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---------CHH---HHHHHH
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SRE---AQHSLR  151 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L---------~~~---~~~~Ll  151 (365)
                         ..++.++..-+..     ..-..+.++++....        ..+.-+++|||+|.+         +..   +.|+||
T Consensus       413 ---A~mTGGDVAPlG~-----qaVTkiH~lFDWakk--------S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlL  476 (630)
T KOG0742|consen  413 ---AIMTGGDVAPLGA-----QAVTKIHKLFDWAKK--------SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL  476 (630)
T ss_pred             ---ehhcCCCccccch-----HHHHHHHHHHHHHhh--------cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHH
Confidence               2222222111111     111123334433322        233468999999854         332   334444


Q ss_pred             HHHhhhcCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHc
Q 017844          152 RTMEKYSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKE  205 (365)
Q Consensus       152 ~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~  205 (365)
                      ----+.+..+.++++||.+..++.++-+|+. +++|+-|..++..++|..++.+.
T Consensus       477 fRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky  531 (630)
T KOG0742|consen  477 FRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY  531 (630)
T ss_pred             HHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence            4444566788899999999999999999995 99999999999999998887653

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.43  E-value=1.1e-11  Score=113.77  Aligned_cols=200  Identities=18%  Similarity=0.137  Sum_probs=121.3

Q ss_pred             cccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc
Q 017844           15 VIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA   92 (365)
Q Consensus        15 iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (365)
                      ++|+....+.+...+..  ....+++|+|++||||+++|++|...-.......+.++|..+ . +  ...+        .
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~-~-~--~~l~--------~   68 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAAL-S-E--NLLD--------S   68 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCC-C-h--HHHH--------H
Confidence            46766666655555543  222339999999999999999997643222223333444221 0 0  0000        0


Q ss_pred             cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------Cce
Q 017844           93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASC  161 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~~~  161 (365)
                      ..+....   +.+...          .....+........+++|||++.|+...|..|++.|++..           .++
T Consensus        69 ~lfG~~~---g~~~ga----------~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~  135 (329)
T TIGR02974        69 ELFGHEA---GAFTGA----------QKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDV  135 (329)
T ss_pred             HHhcccc---ccccCc----------ccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence            0000000   000000          0000000012234689999999999999999999997632           356


Q ss_pred             eEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHHH----HHcC----CCCCHHHHHHHHHH-c
Q 017844          162 RLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIA----KKEG----LQLPSGFATRLAEK-S  221 (365)
Q Consensus       162 ~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~~----~~~~----~~i~~~~~~~i~~~-~  221 (365)
                      ++|++|+...       .+.+.+..|+.  .|.++|+.  .+++..++...+    .+.|    ..+++++++.+.+. +
T Consensus       136 RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~W  215 (329)
T TIGR02974       136 RLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHW  215 (329)
T ss_pred             EEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCC
Confidence            7888887542       35577888874  67777776  456655555443    3333    36899999999995 5


Q ss_pred             CCCHHHHHHHHHHHHhcC
Q 017844          222 NRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       222 ~g~lr~ai~~l~~~~~~~  239 (365)
                      .||+|++.+.++.++...
T Consensus       216 PGNvrEL~n~i~~~~~~~  233 (329)
T TIGR02974       216 PGNVRELKNVVERSVYRH  233 (329)
T ss_pred             CchHHHHHHHHHHHHHhC
Confidence            999999999999887754

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.42  E-value=2.8e-12  Score=112.43  Aligned_cols=199  Identities=19%  Similarity=0.290  Sum_probs=111.1

Q ss_pred             cccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc----c
Q 017844           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL----S   90 (365)
Q Consensus        15 iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~   90 (365)
                      ++|.+..++.|..++.++...+++++||+|+|||++++.+...+.......+++.....     ......  ...    .
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~--~~~~~~~~   73 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEE-----SNESSL--RSFIEETS   73 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTB-----SHHHHH--HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccc-----hhhhHH--HHHHHHHH
Confidence            57889999999999988877779999999999999999999876333222222222110     000000  000    0


Q ss_pred             cccc----ee-cCCC--------CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC------HHHHHHHH
Q 017844           91 SANH----VE-LSPS--------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------REAQHSLR  151 (365)
Q Consensus        91 ~~~~----~~-~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------~~~~~~Ll  151 (365)
                      ....    +. ..+.        ............+++.+...        +..-|++|||++.+.      ......|.
T Consensus        74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--------~~~~iiviDe~~~~~~~~~~~~~~~~~l~  145 (234)
T PF01637_consen   74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK--------GKKVIIVIDEFQYLAIASEEDKDFLKSLR  145 (234)
T ss_dssp             HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC--------HCCEEEEEETGGGGGBCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc--------CCcEEEEEecHHHHhhcccchHHHHHHHH
Confidence            0000    00 0000        00011112344555554432        223799999998877      45556677


Q ss_pred             HHHhh--hcCceeEEEEecCCCc------ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHc
Q 017844          152 RTMEK--YSASCRLILCCNSSSK------VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQL--PSGFATRLAEKS  221 (365)
Q Consensus       152 ~~le~--~~~~~~~Il~t~~~~~------l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i--~~~~~~~i~~~~  221 (365)
                      +.++.  ...+..+|++++...-      -..++..|+..+.+++++.++..+++...+... ..+  +++.++.+...+
T Consensus       146 ~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~  224 (234)
T PF01637_consen  146 SLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLT  224 (234)
T ss_dssp             HHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHH
T ss_pred             HHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHh
Confidence            77766  2345667777665321      123466777789999999999999999987665 544  999999999999


Q ss_pred             CCCHHHHH
Q 017844          222 NRSLRRAI  229 (365)
Q Consensus       222 ~g~lr~ai  229 (365)
                      +|.++...
T Consensus       225 gG~P~~l~  232 (234)
T PF01637_consen  225 GGNPRYLQ  232 (234)
T ss_dssp             TT-HHHHH
T ss_pred             CCCHHHHh
Confidence            99998764

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=9.5e-12  Score=114.22  Aligned_cols=151  Identities=15%  Similarity=0.283  Sum_probs=100.0

Q ss_pred             CCCCCCccccCHHHHHHHHHHH----Hc-------CCC--CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLV----TE-------QDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l----~~-------~~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~   74 (365)
                      +|.+|+.++-.++.++.+..-+    ++       |+.  ..+||||||||||||++-++|+.|.- +            
T Consensus       196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-d------------  262 (457)
T KOG0743|consen  196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-D------------  262 (457)
T ss_pred             CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-c------------
Confidence            4678899988776666555444    32       222  12999999999999999999997621 1            


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-C--H-------
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-S--R-------  144 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L-~--~-------  144 (365)
                               +          ..+.-.+.....     + ++.+....       .+..||+|+++|.- +  .       
T Consensus       263 ---------I----------ydLeLt~v~~n~-----d-Lr~LL~~t-------~~kSIivIEDIDcs~~l~~~~~~~~~  310 (457)
T KOG0743|consen  263 ---------I----------YDLELTEVKLDS-----D-LRHLLLAT-------PNKSILLIEDIDCSFDLRERRKKKKE  310 (457)
T ss_pred             ---------e----------EEeeeccccCcH-----H-HHHHHHhC-------CCCcEEEEeecccccccccccccccc
Confidence                     0          111111111111     2 33333222       24479999999853 1  0       


Q ss_pred             --------HHHHHHHHHHhhhcC----ceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHH
Q 017844          145 --------EAQHSLRRTMEKYSA----SCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAK  203 (365)
Q Consensus       145 --------~~~~~Ll~~le~~~~----~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~  203 (365)
                              -....||+.++..-.    .-.+|||||+.++++|++.++.   ..|++..-+.+.......+.+.
T Consensus       311 ~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~  384 (457)
T KOG0743|consen  311 NFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG  384 (457)
T ss_pred             cccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence                    123468888886533    3478999999999999999955   3799999999998888887764

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=3.3e-12  Score=117.96  Aligned_cols=178  Identities=23%  Similarity=0.255  Sum_probs=122.7

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHH----------cCCCC--eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVT----------EQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~----------~~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~   72 (365)
                      +.-++-.|+++.|.+.+++.+..++-          .-+.+  .+|+.||||+|||.+++++|.+....           
T Consensus       145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at-----------  213 (428)
T KOG0740|consen  145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT-----------  213 (428)
T ss_pred             ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcce-----------
Confidence            34466789999999999888887653          11222  38999999999999999999875221           


Q ss_pred             ceecCCCcceeccccccccccceecCCCCcC----ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----
Q 017844           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----  144 (365)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----  144 (365)
                      |                     +.+.++...    ......++.++.-..         ...+.|++|||+|.+-.    
T Consensus       214 f---------------------f~iSassLtsK~~Ge~eK~vralf~vAr---------~~qPsvifidEidslls~Rs~  263 (428)
T KOG0740|consen  214 F---------------------FNISASSLTSKYVGESEKLVRALFKVAR---------SLQPSVIFIDEIDSLLSKRSD  263 (428)
T ss_pred             E---------------------eeccHHHhhhhccChHHHHHHHHHHHHH---------hcCCeEEEechhHHHHhhcCC
Confidence            1                     222222211    111223444433322         23568999999997621    


Q ss_pred             -------HHH-HHHHHHHh---hhcCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844          145 -------EAQ-HSLRRTME---KYSASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       145 -------~~~-~~Ll~~le---~~~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~  212 (365)
                             ... +.|+...-   ....++.+|.+||.+..++++++.|++ ++.++.|+.+....+++..+.+.+..+.+.
T Consensus       264 ~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~  343 (428)
T KOG0740|consen  264 NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDL  343 (428)
T ss_pred             cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHH
Confidence                   111 22333221   123467788889999999999999996 788999999999999999998887888899


Q ss_pred             HHHHHHHHcCC
Q 017844          213 FATRLAEKSNR  223 (365)
Q Consensus       213 ~~~~i~~~~~g  223 (365)
                      .+..|++.++|
T Consensus       344 d~~~l~~~Teg  354 (428)
T KOG0740|consen  344 DISLLAKVTEG  354 (428)
T ss_pred             HHHHHHHHhcC
Confidence            99999997765

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.40  E-value=1.9e-11  Score=106.12  Aligned_cols=108  Identities=26%  Similarity=0.269  Sum_probs=90.6

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC------------CCcccHHHhccceeEEecCCCHHHHHHH
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS------------SSKVTEAIRSRCLNIRINSPTEEQIVKV  197 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~i  197 (365)
                      -+.|+||||+|+|+-+.+..|.+.+|+--. ..+|++||.            +..++-.+.+|..+|.-.|++.+++.++
T Consensus       288 vpGVLFIDEvHMLDIEcFsFlNrAlE~d~~-PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~I  366 (454)
T KOG2680|consen  288 VPGVLFIDEVHMLDIECFSFLNRALENDMA-PIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKI  366 (454)
T ss_pred             ccceEEEeeehhhhhHHHHHHHHHhhhccC-cEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHH
Confidence            357999999999999999999999986422 234555553            2248889999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 017844          198 LEFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ  238 (365)
Q Consensus       198 L~~~~~~~~~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~  238 (365)
                      |+-+|+++++.+++++++.+.... ..++|.+++++......
T Consensus       367 L~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~  408 (454)
T KOG2680|consen  367 LRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLV  408 (454)
T ss_pred             HHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999854 57999999998765443

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.40  E-value=8.7e-12  Score=124.24  Aligned_cols=221  Identities=14%  Similarity=0.116  Sum_probs=123.3

Q ss_pred             CCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC-ccceeccccceecCCCcceeccccccc
Q 017844           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA-EKVKVENKTWKIDAGSRNIDLELTTLS   90 (365)
Q Consensus        12 ~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~   90 (365)
                      |..|+||+.++..+...+-.+...+++|.|++|+|||+++++++..+-.-.. ....+.|..  ..||..|.+|  ..+.
T Consensus         3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p--~~~~~~~~~~--~~~~   78 (633)
T TIGR02442         3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDP--DDPEEWCEEC--RRKY   78 (633)
T ss_pred             cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCC--CCccccChhh--hhcc
Confidence            7899999999998888777777777999999999999999999985511000 000111111  2344444444  2211


Q ss_pred             cc------cceecCCC--CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----
Q 017844           91 SA------NHVELSPS--DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----  158 (365)
Q Consensus        91 ~~------~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----  158 (365)
                      ..      .++.+...  +........+...+..-......+.-......+++|||++.+++..++.|++.|++..    
T Consensus        79 ~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~  158 (633)
T TIGR02442        79 RPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE  158 (633)
T ss_pred             cccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence            11      11111111  0000000011111110000000000012344699999999999999999999998631    


Q ss_pred             ---------CceeEEEEecCCC-cccHHHhccce-eEEecCCC-HHHHHHHHHHHHH-----------------------
Q 017844          159 ---------ASCRLILCCNSSS-KVTEAIRSRCL-NIRINSPT-EEQIVKVLEFIAK-----------------------  203 (365)
Q Consensus       159 ---------~~~~~Il~t~~~~-~l~~~l~sR~~-~i~~~~~~-~~~~~~iL~~~~~-----------------------  203 (365)
                               .++.+|.++|..+ .+.+++.+|+. .+.+..+. .++..+++.+...                       
T Consensus       159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i  238 (633)
T TIGR02442       159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRI  238 (633)
T ss_pred             ECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHH
Confidence                     2344555444322 47789999994 56666554 3444444433111                       


Q ss_pred             ------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHH
Q 017844          204 ------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETCR  236 (365)
Q Consensus       204 ------~~~~~i~~~~~~~i~~~~---~-g~lr~ai~~l~~~~  236 (365)
                            ...+.++++++++++..+   + .++|..+.++..+.
T Consensus       239 ~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ar  281 (633)
T TIGR02442       239 ARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAAR  281 (633)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence                  124678888888888754   2 24777777766543

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.39  E-value=3.2e-11  Score=110.88  Aligned_cols=204  Identities=14%  Similarity=0.103  Sum_probs=124.1

Q ss_pred             CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      .+++++|.....+.+.+.+..  ....+++|+|++||||+++|++|...-.......+.++|..+ .  . .       .
T Consensus         4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~-~--~-~-------~   72 (326)
T PRK11608          4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL-N--E-N-------L   72 (326)
T ss_pred             ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCC-C--H-H-------H
Confidence            477899988777777666653  222349999999999999999997632222223344444322 0  0 0       0


Q ss_pred             cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----------
Q 017844           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------  158 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----------  158 (365)
                      + ....+...........             ....+.-.......++|||++.|+...|..|++.+++..          
T Consensus        73 ~-~~~lfg~~~~~~~g~~-------------~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~  138 (326)
T PRK11608         73 L-DSELFGHEAGAFTGAQ-------------KRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPL  138 (326)
T ss_pred             H-HHHHccccccccCCcc-------------cccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCcee
Confidence            0 0000000000000000             000000012233689999999999999999999997632          


Q ss_pred             -CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHH----HHHcC----CCCCHHHHHHHH
Q 017844          159 -ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFI----AKKEG----LQLPSGFATRLA  218 (365)
Q Consensus       159 -~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~----~~~~~----~~i~~~~~~~i~  218 (365)
                       .++++|++++...       .+.+.+..|+.  .|.++|+..  +++..++..+    +.+.+    ..++++++..+.
T Consensus       139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~  218 (326)
T PRK11608        139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL  218 (326)
T ss_pred             eccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence             2467888776542       35577888874  677777753  3455444443    33333    258999999998


Q ss_pred             H-HcCCCHHHHHHHHHHHHhcC
Q 017844          219 E-KSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       219 ~-~~~g~lr~ai~~l~~~~~~~  239 (365)
                      + .+.||+|+..+.++.++..+
T Consensus       219 ~y~WPGNvrEL~~vl~~a~~~~  240 (326)
T PRK11608        219 NYRWPGNIRELKNVVERSVYRH  240 (326)
T ss_pred             hCCCCcHHHHHHHHHHHHHHhc
Confidence            8 57999999999999887653

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=2.7e-12  Score=110.87  Aligned_cols=159  Identities=19%  Similarity=0.313  Sum_probs=110.2

Q ss_pred             ccccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus         4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      ++|-.-.++.++-|-+...+.+++.+.-           | +.|. +++||+||+|||.+|+++|+.-..   ..+.+-+
T Consensus       176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA---TFlRvvG  252 (440)
T KOG0726|consen  176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA---TFLRVVG  252 (440)
T ss_pred             cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch---hhhhhhh
Confidence            5666667999999999999999998741           2 2333 999999999999999999884211   1111111


Q ss_pred             ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-------
Q 017844           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (365)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-------  143 (365)
                      .+.                     +.    .+-......++++++......         +.|+||||+|.+.       
T Consensus       253 seL---------------------iQ----kylGdGpklvRqlF~vA~e~a---------pSIvFiDEIdAiGtKRyds~  298 (440)
T KOG0726|consen  253 SEL---------------------IQ----KYLGDGPKLVRELFRVAEEHA---------PSIVFIDEIDAIGTKRYDSN  298 (440)
T ss_pred             HHH---------------------HH----HHhccchHHHHHHHHHHHhcC---------CceEEeehhhhhccccccCC
Confidence            100                     00    001111224667776655433         4799999999873       


Q ss_pred             ----HHHHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHH
Q 017844          144 ----REAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLE  199 (365)
Q Consensus       144 ----~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~  199 (365)
                          .+.|..++.+|+..     ...+++|++||..+.++|++.+-.   ..|.|+.|+.....+++.
T Consensus       299 SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~  366 (440)
T KOG0726|consen  299 SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQ  366 (440)
T ss_pred             CccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEE
Confidence                34667777777653     457899999999999999998754   379999999888777765

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.39  E-value=1.3e-10  Score=109.51  Aligned_cols=153  Identities=14%  Similarity=0.196  Sum_probs=91.8

Q ss_pred             ccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccc
Q 017844           14 QVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN   93 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (365)
                      .++|++++++.+...+..+..  ++|.||||+|||++|++++....... ......+ .|             .      
T Consensus        21 ~i~gre~vI~lll~aalag~h--VLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~-~f-------------t------   77 (498)
T PRK13531         21 GLYERSHAIRLCLLAALSGES--VFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMT-RF-------------S------   77 (498)
T ss_pred             hccCcHHHHHHHHHHHccCCC--EEEECCCChhHHHHHHHHHHHhcccC-cceeeee-ee-------------c------
Confidence            468999999988888766644  99999999999999999998653211 0000000 00             0      


Q ss_pred             ceecCCCC-cCccchhHHHHHH--HHHHhcCCCCCCC-CCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---------Cc
Q 017844           94 HVELSPSD-AGFQDRYVVQEVI--KEMAKNRPIDTKG-KRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------AS  160 (365)
Q Consensus        94 ~~~~~~~~-~~~~~~~~~~~~l--~~~~~~~~~~~~~-~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---------~~  160 (365)
                          .+.+ .|..   .+....  ..+....    .+ -....++++||+..+++..++.|+..|++..         -.
T Consensus        78 ----tp~DLfG~l---~i~~~~~~g~f~r~~----~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp  146 (498)
T PRK13531         78 ----TPEEVFGPL---SIQALKDEGRYQRLT----SGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIP  146 (498)
T ss_pred             ----CcHHhcCcH---HHhhhhhcCchhhhc----CCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCC
Confidence                0000 0000   001100  0000000    00 1123599999999999999999999997632         22


Q ss_pred             eeEEEEecCC-C---cccHHHhccce-eEEecCCC-HHHHHHHHHH
Q 017844          161 CRLILCCNSS-S---KVTEAIRSRCL-NIRINSPT-EEQIVKVLEF  200 (365)
Q Consensus       161 ~~~Il~t~~~-~---~l~~~l~sR~~-~i~~~~~~-~~~~~~iL~~  200 (365)
                      .+||++++++ +   ...+++.+|+. .+.+++++ .++..++|..
T Consensus       147 ~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~  192 (498)
T PRK13531        147 MRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS  192 (498)
T ss_pred             CcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence            3566655542 2   13458999995 68888886 4555777754

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.38  E-value=8.2e-12  Score=131.28  Aligned_cols=108  Identities=12%  Similarity=0.105  Sum_probs=76.1

Q ss_pred             CceEEEEeCCCCCCHH-----HHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHH
Q 017844          130 GFKVLVLNEVDKLSRE-----AQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVK  196 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~-----~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~  196 (365)
                      .|.||+|||+|.+...     ..+.|+..|...     ..++.+|.+||.++.++|++++  |+ ..|.++.|+..+..+
T Consensus      1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206       1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred             CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHH
Confidence            3589999999998743     245666666532     3456788888899999999998  77 478999998888888


Q ss_pred             HHHHHHHHcCCCCCHH--HHHHHHHHcCC-CHHHHHHHHHHHHh
Q 017844          197 VLEFIAKKEGLQLPSG--FATRLAEKSNR-SLRRAILSFETCRV  237 (365)
Q Consensus       197 iL~~~~~~~~~~i~~~--~~~~i~~~~~g-~lr~ai~~l~~~~~  237 (365)
                      ++.......|+.+.++  .++.+|+.+.| +.++..++++.++.
T Consensus      1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206       1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred             HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            7765444556655543  37888888876 44555555554443

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=4e-12  Score=108.54  Aligned_cols=184  Identities=18%  Similarity=0.283  Sum_probs=119.6

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccce
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVK   67 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~   67 (365)
                      |+-++.-.-.++.++-|-++.+..+++.++-           | ..|. +++|||||+|||.+|+++|+.-   +...+.
T Consensus       165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dacfir  241 (435)
T KOG0729|consen  165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DACFIR  241 (435)
T ss_pred             EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---CceEEe
Confidence            3445554456899999999999998887752           2 2233 9999999999999999998742   111111


Q ss_pred             eccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-----
Q 017844           68 VENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-----  142 (365)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L-----  142 (365)
                      +-+.+.                    .-.++     ......+++++... .        ..+.-++++||+|.+     
T Consensus       242 vigsel--------------------vqkyv-----gegarmvrelf~ma-r--------tkkaciiffdeidaiggarf  287 (435)
T KOG0729|consen  242 VIGSEL--------------------VQKYV-----GEGARMVRELFEMA-R--------TKKACIIFFDEIDAIGGARF  287 (435)
T ss_pred             ehhHHH--------------------HHHHh-----hhhHHHHHHHHHHh-c--------ccceEEEEeeccccccCccc
Confidence            111100                    00011     11112355555432 2        223479999999977     


Q ss_pred             ------CHHHHHHHHHHHhh-----hcCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCC
Q 017844          143 ------SREAQHSLRRTMEK-----YSASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQ  208 (365)
Q Consensus       143 ------~~~~~~~Ll~~le~-----~~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~  208 (365)
                            +.+.|..++.++.+     +..++++.++||.++.++|++.+-.   ..++|.-|+.+-...+++-+++.-.  
T Consensus       288 ddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms--  365 (435)
T KOG0729|consen  288 DDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS--  365 (435)
T ss_pred             cCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc--
Confidence                  34567777887764     4678999999999999999998754   3799999999988888875554332  


Q ss_pred             CCHHH-HHHHHHHcCC
Q 017844          209 LPSGF-ATRLAEKSNR  223 (365)
Q Consensus       209 i~~~~-~~~i~~~~~g  223 (365)
                      ++.+. .+.|++.+..
T Consensus       366 verdir~ellarlcpn  381 (435)
T KOG0729|consen  366 VERDIRFELLARLCPN  381 (435)
T ss_pred             cccchhHHHHHhhCCC
Confidence            22332 5566666544

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.37  E-value=3e-11  Score=117.90  Aligned_cols=205  Identities=14%  Similarity=0.145  Sum_probs=124.3

Q ss_pred             CCCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      ..+|++++|.....+.+...++.  ....+++|+|++||||+++|+++...-.......+.++|..+   |. ...+   
T Consensus       200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~---~~-~~~e---  272 (520)
T PRK10820        200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI---PD-DVVE---  272 (520)
T ss_pred             cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC---CH-HHHH---
Confidence            45899999987766666655542  222339999999999999999986533222222344444322   00 0000   


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------  157 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------  157 (365)
                           ...+...+.......           .....  .-.......++|||++.|+...|..|++.+++.         
T Consensus       273 -----~elFG~~~~~~~~~~-----------~~~~g--~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~  334 (520)
T PRK10820        273 -----SELFGHAPGAYPNAL-----------EGKKG--FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH  334 (520)
T ss_pred             -----HHhcCCCCCCcCCcc-----------cCCCC--hhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCc
Confidence                 000000000000000           00000  000123368999999999999999999999763         


Q ss_pred             --cCceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHH----HHHHHHHcCC---CCCHHHHHHH
Q 017844          158 --SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKV----LEFIAKKEGL---QLPSGFATRL  217 (365)
Q Consensus       158 --~~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~i----L~~~~~~~~~---~i~~~~~~~i  217 (365)
                        +.++++|++|+...       .+.+.+..|+.  .+.++|+..  +++..+    +.+.+.+.|.   .+++++++.+
T Consensus       335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L  414 (520)
T PRK10820        335 EVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL  414 (520)
T ss_pred             ceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence              12457887776543       25566888864  566666654  244433    3444444443   6899999999


Q ss_pred             HHH-cCCCHHHHHHHHHHHHhc
Q 017844          218 AEK-SNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       218 ~~~-~~g~lr~ai~~l~~~~~~  238 (365)
                      ... +.||+|++.+.++.++..
T Consensus       415 ~~y~WPGNvreL~nvl~~a~~~  436 (520)
T PRK10820        415 TRYGWPGNVRQLKNAIYRALTQ  436 (520)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHh
Confidence            996 999999999999988764

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.37  E-value=3.2e-11  Score=116.83  Aligned_cols=205  Identities=15%  Similarity=0.116  Sum_probs=125.0

Q ss_pred             CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      .+|++++|+....+.+...++.  ....+++|+|++||||+++|+.|...-.......+.++|..+   |. .       
T Consensus       209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l---~e-~-------  277 (526)
T TIGR02329       209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAI---AE-S-------  277 (526)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccC---Ch-h-------
Confidence            4689999998888877777753  223349999999999999999997643223333344444322   00 0       


Q ss_pred             ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---------
Q 017844           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------  158 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---------  158 (365)
                      .+ ....+.+.........            .....+.-.......++|||++.|+...|..|++.|++..         
T Consensus       278 ll-eseLFG~~~gaftga~------------~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~  344 (526)
T TIGR02329       278 LL-EAELFGYEEGAFTGAR------------RGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEP  344 (526)
T ss_pred             HH-HHHhcCCccccccccc------------ccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCce
Confidence            00 0000000000000000            0000000001234689999999999999999999998632         


Q ss_pred             --CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHH----HHcCCCCCHHHHHH-----
Q 017844          159 --ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIA----KKEGLQLPSGFATR-----  216 (365)
Q Consensus       159 --~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~----~~~~~~i~~~~~~~-----  216 (365)
                        .++++|++|+...       .+.+.+..|+.  .+.++|+..  +++..+....+    ...++.++++++..     
T Consensus       345 ~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~  424 (526)
T TIGR02329       345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVA  424 (526)
T ss_pred             eeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHH
Confidence              2457888887653       24445666653  677777654  35554444443    34466789999886     


Q ss_pred             --HHH-HcCCCHHHHHHHHHHHHhc
Q 017844          217 --LAE-KSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       217 --i~~-~~~g~lr~ai~~l~~~~~~  238 (365)
                        +.+ .+.||+|++.+.++.++..
T Consensus       425 ~~L~~y~WPGNvrEL~nvier~~i~  449 (526)
T TIGR02329       425 DPLQRYPWPGNVRELRNLVERLALE  449 (526)
T ss_pred             HHHHhCCCCchHHHHHHHHHHHHHh
Confidence              555 6799999999999998764

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.36  E-value=4.6e-11  Score=116.52  Aligned_cols=205  Identities=14%  Similarity=0.118  Sum_probs=127.2

Q ss_pred             CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      ++.+++|+....+.+...++.  ....+++|+|++||||+++|++|...-.......+.++|..+   |. ...+     
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~---~~-~~~e-----  255 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAAL---PE-SLAE-----  255 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccC---Ch-HHHH-----
Confidence            678899998888777777654  222349999999999999999998753323333344444322   00 0000     


Q ss_pred             cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----------
Q 017844           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------  158 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----------  158 (365)
                         ...+...........             ....+.........++|||++.|+...|..|++.+++..          
T Consensus       256 ---~~lfG~~~g~~~ga~-------------~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~  319 (509)
T PRK05022        256 ---SELFGHVKGAFTGAI-------------SNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSL  319 (509)
T ss_pred             ---HHhcCccccccCCCc-------------ccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcce
Confidence               000000000000000             000000011233679999999999999999999997632          


Q ss_pred             -CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHH
Q 017844          159 -ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIA----KKEG---LQLPSGFATRLAE  219 (365)
Q Consensus       159 -~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~----~~~~---~~i~~~~~~~i~~  219 (365)
                       .++++|++|+...       .+.+.+..|+.  .|.++|+..  +++..+....+    .+.|   ..++++++..+..
T Consensus       320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~  399 (509)
T PRK05022        320 RVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA  399 (509)
T ss_pred             ecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence             2568888887653       35667777764  466666643  34544444333    3333   5789999999998


Q ss_pred             -HcCCCHHHHHHHHHHHHhcCC
Q 017844          220 -KSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       220 -~~~g~lr~ai~~l~~~~~~~~  240 (365)
                       .+.||+|+..+.++.++..+.
T Consensus       400 y~WPGNvrEL~~~i~ra~~~~~  421 (509)
T PRK05022        400 YDWPGNVRELEHVISRAALLAR  421 (509)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcC
Confidence             579999999999999877543

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.35  E-value=4.2e-11  Score=112.38  Aligned_cols=206  Identities=16%  Similarity=0.153  Sum_probs=131.0

Q ss_pred             CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      ..+.+++|+..+.+.+...+.+  ..-.+++|+|++||||..+|++|.+.-.......+.++|..+   |.+        
T Consensus       138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAi---p~~--------  206 (464)
T COG2204         138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAI---PEN--------  206 (464)
T ss_pred             cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccC---CHH--------
Confidence            3678899999999888888865  222339999999999999999998743222333344444222   000        


Q ss_pred             ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh----------
Q 017844           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----------  157 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~----------  157 (365)
                      . -....+......+..             +.....+.--..+...+++||+..|+.+.|..|++.|++.          
T Consensus       207 l-~ESELFGhekGAFTG-------------A~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~  272 (464)
T COG2204         207 L-LESELFGHEKGAFTG-------------AITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKP  272 (464)
T ss_pred             H-HHHHhhcccccCcCC-------------cccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcc
Confidence            0 000001110000000             0000000001223468999999999999999999999863          


Q ss_pred             -cCceeEEEEecCCC-------cccHHHhccceeEEecCCCHHH----H----HHHHHHHHHHcCC---CCCHHHHHHHH
Q 017844          158 -SASCRLILCCNSSS-------KVTEAIRSRCLNIRINSPTEEQ----I----VKVLEFIAKKEGL---QLPSGFATRLA  218 (365)
Q Consensus       158 -~~~~~~Il~t~~~~-------~l~~~l~sR~~~i~~~~~~~~~----~----~~iL~~~~~~~~~---~i~~~~~~~i~  218 (365)
                       +-++++|.+|+..-       ++-+.+..|..++.+.-|+..+    +    ..++++.+.+.|.   .+++++++.+.
T Consensus       273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~  352 (464)
T COG2204         273 IKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALL  352 (464)
T ss_pred             cceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence             23567888888653       4677888888776666565443    2    3334445554443   68899999998


Q ss_pred             H-HcCCCHHHHHHHHHHHHhcCC
Q 017844          219 E-KSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       219 ~-~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      . .+.||+|++.|.++.++....
T Consensus       353 ~y~WPGNVREL~N~ver~~il~~  375 (464)
T COG2204         353 AYDWPGNVRELENVVERAVILSE  375 (464)
T ss_pred             hCCCChHHHHHHHHHHHHHhcCC
Confidence            8 589999999999999877654

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=99.35  E-value=6.3e-11  Score=113.71  Aligned_cols=187  Identities=17%  Similarity=0.196  Sum_probs=118.7

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhc-------CCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVF-------GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (365)
                      -++++|-||+|||.+++.+.++|.       .+....+.+++..+ ..|..- ++.   .     ...+.....  ....
T Consensus       424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l-~~~~~~-Y~~---I-----~~~lsg~~~--~~~~  491 (767)
T KOG1514|consen  424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL-ASPREI-YEK---I-----WEALSGERV--TWDA  491 (767)
T ss_pred             eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee-cCHHHH-HHH---H-----HHhcccCcc--cHHH
Confidence            399999999999999999999876       34444444555433 111000 000   0     000111100  0000


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---CceeEEEEecCCC---c-ccHHHhccc
Q 017844          109 VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---ASCRLILCCNSSS---K-VTEAIRSRC  181 (365)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---~~~~~Il~t~~~~---~-l~~~l~sR~  181 (365)
                      .+..+-..+.  .+   .......||+|||+|.|-...|..|.++++++.   ....+|.++|+.+   + +...+.||.
T Consensus       492 al~~L~~~f~--~~---k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRl  566 (767)
T KOG1514|consen  492 ALEALNFRFT--VP---KPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRL  566 (767)
T ss_pred             HHHHHHHhhc--cC---CCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhc
Confidence            1111111111  11   124456899999999999888999999999863   3355666666654   2 333556675


Q ss_pred             --eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHhcCC
Q 017844          182 --LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE---KSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       182 --~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~---~~~g~lr~ai~~l~~~~~~~~  240 (365)
                        ..+.|.|++.+++.+++..++... ..++.++++.+++   ...||.|+|+..+++++--+.
T Consensus       567 g~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~  629 (767)
T KOG1514|consen  567 GLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAE  629 (767)
T ss_pred             cceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence              589999999999999999877543 3567888888877   457999999999998766544

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=2.6e-11  Score=106.31  Aligned_cols=141  Identities=18%  Similarity=0.309  Sum_probs=88.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC----cCccchhHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD----AGFQDRYVVQE  112 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  112 (365)
                      ++++||||||||++++++|+.+--..      +++    .             ..+..++++.-.    .-...+..+..
T Consensus       180 iLlhGPPGTGKTSLCKaLaQkLSIR~------~~~----y-------------~~~~liEinshsLFSKWFsESgKlV~k  236 (423)
T KOG0744|consen  180 ILLHGPPGTGKTSLCKALAQKLSIRT------NDR----Y-------------YKGQLIEINSHSLFSKWFSESGKLVAK  236 (423)
T ss_pred             EEEeCCCCCChhHHHHHHHHhheeee------cCc----c-------------ccceEEEEehhHHHHHHHhhhhhHHHH
Confidence            89999999999999999999873211      110    0             111122222211    00111123444


Q ss_pred             HHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhhhcCc-eeEEEEecC-CCcccH
Q 017844          113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR---------------EAQHSLRRTMEKYSAS-CRLILCCNS-SSKVTE  175 (365)
Q Consensus       113 ~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~---------------~~~~~Ll~~le~~~~~-~~~Il~t~~-~~~l~~  175 (365)
                      .++.+......    .+..-.++|||++.|..               .+.|+++.-|+..... ..+|++|++ .+.++.
T Consensus       237 mF~kI~ELv~d----~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~  312 (423)
T KOG0744|consen  237 MFQKIQELVED----RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDV  312 (423)
T ss_pred             HHHHHHHHHhC----CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHH
Confidence            44444443332    34456889999997732               2568888888876432 334555444 457999


Q ss_pred             HHhccce-eEEecCCCHHHHHHHHHHHHHH
Q 017844          176 AIRSRCL-NIRINSPTEEQIVKVLEFIAKK  204 (365)
Q Consensus       176 ~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~  204 (365)
                      ++.+|.. +..+.+|+.+.+.++++....+
T Consensus       313 AfVDRADi~~yVG~Pt~~ai~~IlkscieE  342 (423)
T KOG0744|consen  313 AFVDRADIVFYVGPPTAEAIYEILKSCIEE  342 (423)
T ss_pred             HhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence            9999996 7888999999999999876653

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.34  E-value=6e-11  Score=114.89  Aligned_cols=204  Identities=15%  Similarity=0.150  Sum_probs=120.7

Q ss_pred             CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhc--------CCCCccceeccccceecCCCc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVF--------GPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~--------~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|++++|+....+.++..+..  ....+++|+|++||||+++|++|...+.        ......+.++|..+   |. .
T Consensus       217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal---~e-~  292 (538)
T PRK15424        217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI---AE-S  292 (538)
T ss_pred             chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccC---Ch-h
Confidence            688999998888888777653  2233499999999999999999987521        11112222333211   00 0


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---  157 (365)
                      ..+        ...+.+........            ......+.-.......++|||++.|+...|..|++.|++.   
T Consensus       293 lle--------seLFG~~~gaftga------------~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~  352 (538)
T PRK15424        293 LLE--------AELFGYEEGAFTGS------------RRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT  352 (538)
T ss_pred             hHH--------HHhcCCccccccCc------------cccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEE
Confidence            000        00000000000000            0000000001123468999999999999999999999863   


Q ss_pred             --------cCceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHHH----HcCCCCCHHHH
Q 017844          158 --------SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAK----KEGLQLPSGFA  214 (365)
Q Consensus       158 --------~~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~~----~~~~~i~~~~~  214 (365)
                              +.++++|++|+...       .+.+.+..|+.  .++++|+..  +++..+....+.    ..+..++++++
T Consensus       353 r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~  432 (538)
T PRK15424        353 RVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALR  432 (538)
T ss_pred             ecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence                    12457888887553       24445666664  566666643  455555555444    35667888776


Q ss_pred             H-------HHHH-HcCCCHHHHHHHHHHHHhc
Q 017844          215 T-------RLAE-KSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       215 ~-------~i~~-~~~g~lr~ai~~l~~~~~~  238 (365)
                      .       .+.. .+.||+|++.|.++.++..
T Consensus       433 ~~~~~a~~~L~~y~WPGNvREL~nvier~~i~  464 (538)
T PRK15424        433 QGLQQCETLLLHYDWPGNVRELRNLMERLALF  464 (538)
T ss_pred             HhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            3       3333 4789999999999998775

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.34  E-value=4.1e-11  Score=112.02  Aligned_cols=190  Identities=21%  Similarity=0.227  Sum_probs=111.9

Q ss_pred             cccCHHHHHHHHHHHH-------c---CC--------CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844           15 VIVHQDIAQNLKKLVT-------E---QD--------CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus        15 iig~~~~~~~l~~~l~-------~---~~--------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      ++||+++++.+..++.       .   ..        ..+++|+||+|+|||++|+++|+.+..+.   ..+++      
T Consensus        79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf---~~~da------  149 (413)
T TIGR00382        79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF---AIADA------  149 (413)
T ss_pred             ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe---EEech------
Confidence            4899999998877662       0   11        23599999999999999999998663211   00111      


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------------
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------  144 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------------  144 (365)
                                .        .+.+..+...   .....+.......+... ....+.|++|||+|.+.+            
T Consensus       150 ----------~--------~L~~~gyvG~---d~e~~L~~~~~~~~~~l-~~a~~gIV~lDEIdkl~~~~~~~s~~~dvs  207 (413)
T TIGR00382       150 ----------T--------TLTEAGYVGE---DVENILLKLLQAADYDV-EKAQKGIIYIDEIDKISRKSENPSITRDVS  207 (413)
T ss_pred             ----------h--------hccccccccc---cHHHHHHHHHHhCcccH-HhcccceEEecccchhchhhcccccccccc
Confidence                      0        0111111111   12222322222121100 122346999999998876            


Q ss_pred             --HHHHHHHHHHhhhc-------------CceeEEEEecC----------------------------C----C------
Q 017844          145 --EAQHSLRRTMEKYS-------------ASCRLILCCNS----------------------------S----S------  171 (365)
Q Consensus       145 --~~~~~Ll~~le~~~-------------~~~~~Il~t~~----------------------------~----~------  171 (365)
                        ..|+.|+++|+...             .+..+|.|+|-                            .    .      
T Consensus       208 g~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~  287 (413)
T TIGR00382       208 GEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADL  287 (413)
T ss_pred             chhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHH
Confidence              58999999996321             12223333332                            0    0      


Q ss_pred             ------------cccHHHhccce-eEEecCCCHHHHHHHHHHH----HH-------HcCC--CCCHHHHHHHHHHc---C
Q 017844          172 ------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFI----AK-------KEGL--QLPSGFATRLAEKS---N  222 (365)
Q Consensus       172 ------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~----~~-------~~~~--~i~~~~~~~i~~~~---~  222 (365)
                                  .+.|.+..|+. ++.|.+++.+++.+++...    .+       ..|+  .+++++++.|++.+   .
T Consensus       288 ~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~  367 (413)
T TIGR00382       288 LRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERK  367 (413)
T ss_pred             HHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCC
Confidence                        03466777774 7889999999999998752    22       1244  57899999999964   2


Q ss_pred             CCHHHHHHHHHHH
Q 017844          223 RSLRRAILSFETC  235 (365)
Q Consensus       223 g~lr~ai~~l~~~  235 (365)
                      -..|.....++..
T Consensus       368 ~GAR~Lr~iie~~  380 (413)
T TIGR00382       368 TGARGLRSIVEGL  380 (413)
T ss_pred             CCchHHHHHHHHh
Confidence            2355555555544

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=2.1e-11  Score=117.79  Aligned_cols=180  Identities=19%  Similarity=0.247  Sum_probs=113.5

Q ss_pred             ccCCCCCCccccCHHHHHHHHHHHHc----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844            6 KYRPKTLDQVIVHQDIAQNLKKLVTE----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus         6 k~rP~~~~~iig~~~~~~~l~~~l~~----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      |-.--+|+|+-|-++++..+...++-          | +... ++||||||||||-+|+++|.+..           -+|
T Consensus       665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-----------L~F  733 (953)
T KOG0736|consen  665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-----------LNF  733 (953)
T ss_pred             CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-----------eeE
Confidence            44445899999999999999988752          2 2122 99999999999999999998641           111


Q ss_pred             eecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH--------
Q 017844           74 KIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------  145 (365)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~--------  145 (365)
                                   -....++.+.+..    ......+|+.+.....         ..+-||++||+|.+.+.        
T Consensus       734 -------------lSVKGPELLNMYV----GqSE~NVR~VFerAR~---------A~PCVIFFDELDSlAP~RG~sGDSG  787 (953)
T KOG0736|consen  734 -------------LSVKGPELLNMYV----GQSEENVREVFERARS---------AAPCVIFFDELDSLAPNRGRSGDSG  787 (953)
T ss_pred             -------------EeecCHHHHHHHh----cchHHHHHHHHHHhhc---------cCCeEEEeccccccCccCCCCCCcc
Confidence                         2222222222211    1122346677666543         34589999999988542        


Q ss_pred             -----HHHHHHHHHhhhc----CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHH-HHHHHHHHHHHHcCCCCCHH
Q 017844          146 -----AQHSLRRTMEKYS----ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEE-QIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       146 -----~~~~Ll~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~-~~~~iL~~~~~~~~~~i~~~  212 (365)
                           ....|+--|+..+    ..+-+|.+||.++-++|++.+  |+. .+++.+...+ ...++|+...++-  .++++
T Consensus       788 GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF--kLded  865 (953)
T KOG0736|consen  788 GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF--KLDED  865 (953)
T ss_pred             ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc--cCCCC
Confidence                 3445666665443    345566678888889999987  453 5666666444 4556666555443  33333


Q ss_pred             -HHHHHHHHcCCC
Q 017844          213 -FATRLAEKSNRS  224 (365)
Q Consensus       213 -~~~~i~~~~~g~  224 (365)
                       .+..||+.+.-+
T Consensus       866 VdL~eiAk~cp~~  878 (953)
T KOG0736|consen  866 VDLVEIAKKCPPN  878 (953)
T ss_pred             cCHHHHHhhCCcC
Confidence             377777766543

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.33  E-value=3.5e-11  Score=110.96  Aligned_cols=206  Identities=18%  Similarity=0.169  Sum_probs=126.6

Q ss_pred             CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcC-CCCccceeccccceecCCCcceeccc
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      ..+.+++|.....+.+++.++.  ....+++++|++|+||+.+|+.|...-.. .....+.+||..+..++..       
T Consensus        75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~-------  147 (403)
T COG1221          75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE-------  147 (403)
T ss_pred             hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH-------
Confidence            3578899987777777766654  22234999999999999999999843222 2344466666544111100       


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh----------
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK----------  156 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~----------  156 (365)
                           ...+.+.......             +.....+.-...+...+++||++.|.+..|..|+++|++          
T Consensus       148 -----~eLFG~~kGaftG-------------a~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~  209 (403)
T COG1221         148 -----AELFGHEKGAFTG-------------AQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQ  209 (403)
T ss_pred             -----HHHhccccceeec-------------ccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCC
Confidence                 0001111110000             000000000122346899999999999999999999997          


Q ss_pred             -hcCceeEEEEecCCC--cccH--HHhccce--eEEecCCCHH--HHHHHHH----HHHHHcCCC---CCHHHHHHHHH-
Q 017844          157 -YSASCRLILCCNSSS--KVTE--AIRSRCL--NIRINSPTEE--QIVKVLE----FIAKKEGLQ---LPSGFATRLAE-  219 (365)
Q Consensus       157 -~~~~~~~Il~t~~~~--~l~~--~l~sR~~--~i~~~~~~~~--~~~~iL~----~~~~~~~~~---i~~~~~~~i~~-  219 (365)
                       .+.++++|++|+...  .+..  ++..|+.  .|+++++...  ++...++    ..+.+.+..   .+++++..+.. 
T Consensus       210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y  289 (403)
T COG1221         210 PRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAY  289 (403)
T ss_pred             CcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence             345678888887654  3555  7777664  5666666433  3333333    344455543   33566666665 


Q ss_pred             HcCCCHHHHHHHHHHHHhcCC
Q 017844          220 KSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       220 ~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      .+.||+|+..|.++.+++.+.
T Consensus       290 ~~pGNirELkN~Ve~~~~~~~  310 (403)
T COG1221         290 DWPGNIRELKNLVERAVAQAS  310 (403)
T ss_pred             CCCCcHHHHHHHHHHHHHHhc
Confidence            579999999999999888764

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.33  E-value=8.8e-11  Score=118.80  Aligned_cols=205  Identities=18%  Similarity=0.200  Sum_probs=124.5

Q ss_pred             CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      .+|++++|+....+.+...++.  ....+++|+|++|||||++|++|...-.......+.++|...   +.. ..+    
T Consensus       373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~---~~~-~~~----  444 (686)
T PRK15429        373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM---PAG-LLE----  444 (686)
T ss_pred             ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccC---Chh-Hhh----
Confidence            4688999998887777665543  222349999999999999999998754333333444444322   000 000    


Q ss_pred             ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---------
Q 017844           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------  158 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---------  158 (365)
                          ...+...........    ......+.         .....+++|||++.|+...|..|++.|++..         
T Consensus       445 ----~~lfg~~~~~~~g~~----~~~~g~le---------~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~  507 (686)
T PRK15429        445 ----SDLFGHERGAFTGAS----AQRIGRFE---------LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKI  507 (686)
T ss_pred             ----hhhcCcccccccccc----cchhhHHH---------hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCc
Confidence                000000000000000    00111111         1123689999999999999999999997632         


Q ss_pred             --CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHH----HHHHcCC---CCCHHHHHHHH
Q 017844          159 --ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEF----IAKKEGL---QLPSGFATRLA  218 (365)
Q Consensus       159 --~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~----~~~~~~~---~i~~~~~~~i~  218 (365)
                        .++++|++|+...       .+...+..|+.  .|.++|+..  +++..++..    .+.+.|.   .+++++++.+.
T Consensus       508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~  587 (686)
T PRK15429        508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLS  587 (686)
T ss_pred             ccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence              3567888887643       24455666654  466666643  344444443    3333342   47899999998


Q ss_pred             H-HcCCCHHHHHHHHHHHHhcC
Q 017844          219 E-KSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       219 ~-~~~g~lr~ai~~l~~~~~~~  239 (365)
                      . .+.||+|+..+.++.++..+
T Consensus       588 ~y~WPGNvrEL~~~i~~a~~~~  609 (686)
T PRK15429        588 NMEWPGNVRELENVIERAVLLT  609 (686)
T ss_pred             hCCCCCcHHHHHHHHHHHHHhC
Confidence            8 58999999999999887653

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.33  E-value=5.9e-11  Score=119.29  Aligned_cols=199  Identities=16%  Similarity=0.142  Sum_probs=123.5

Q ss_pred             CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      .+|++++|.....+.+...++.  ....+++|+|++||||+++|++|...........+.++|..+              
T Consensus       322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~--------------  387 (638)
T PRK11388        322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLY--------------  387 (638)
T ss_pred             ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCC--------------
Confidence            3799999987777666655543  222339999999999999999998754333333344444322              


Q ss_pred             ccccccceecCCCCcCccchhHHHHHHHHH--Hh-cCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc------
Q 017844           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEM--AK-NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS------  158 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~------  158 (365)
                                     .  ......+++...  .. ....+.-.......++|||++.|+...|..|++.+++..      
T Consensus       388 ---------------~--~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~  450 (638)
T PRK11388        388 ---------------P--DEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDS  450 (638)
T ss_pred             ---------------C--hHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCC
Confidence                           0  000000111000  00 000000001234689999999999999999999998632      


Q ss_pred             -----CceeEEEEecCCC-------cccHHHhccce--eEEecCCCHH--HHHHHHHHHHH----Hc--CCCCCHHHHHH
Q 017844          159 -----ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTEE--QIVKVLEFIAK----KE--GLQLPSGFATR  216 (365)
Q Consensus       159 -----~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~~--~~~~iL~~~~~----~~--~~~i~~~~~~~  216 (365)
                           .++++|++|+...       .+.+.+..|+.  .|.++|+...  ++..++..++.    +.  .+.+++++++.
T Consensus       451 ~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~  530 (638)
T PRK11388        451 RRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR  530 (638)
T ss_pred             CceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence                 1456777777542       34455666654  5666666543  45544444443    22  24689999999


Q ss_pred             HHHH-cCCCHHHHHHHHHHHHhcC
Q 017844          217 LAEK-SNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       217 i~~~-~~g~lr~ai~~l~~~~~~~  239 (365)
                      +.+. +.||+|++.+.++.++...
T Consensus       531 L~~y~WPGNvreL~~~l~~~~~~~  554 (638)
T PRK11388        531 LVSYRWPGNDFELRSVIENLALSS  554 (638)
T ss_pred             HHcCCCCChHHHHHHHHHHHHHhC
Confidence            9996 4999999999999877643

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.31  E-value=9.7e-12  Score=104.41  Aligned_cols=132  Identities=20%  Similarity=0.277  Sum_probs=67.7

Q ss_pred             CCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   90 (365)
                      .|++++||+.+++.+.-+..++  +|++++||||+|||++|+.+.. ++.+-...-.++...+ .+.++.....  ....
T Consensus         1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~-lLP~l~~~e~le~~~i-~s~~~~~~~~--~~~~   74 (206)
T PF01078_consen    1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPS-LLPPLTEEEALEVSKI-YSVAGLGPDE--GLIR   74 (206)
T ss_dssp             -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHH-CS--CCEECCESS--S--TT---S-----EEEE
T ss_pred             ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHH-hCCCCchHHHhhhccc-cccccCCCCC--ceec
Confidence            4899999999999999888764  4699999999999999999997 4333221111111111 0000000000  0000


Q ss_pred             cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                      ...+..       .....+...++.......+- .-......|+++||+..+++...+.|++.+++
T Consensus        75 ~~Pfr~-------phhs~s~~~liGgg~~~~PG-eislAh~GVLflDE~~ef~~~vld~Lr~ple~  132 (206)
T PF01078_consen   75 QRPFRA-------PHHSASEAALIGGGRPPRPG-EISLAHRGVLFLDELNEFDRSVLDALRQPLED  132 (206)
T ss_dssp             ---EEE-------E-TT--HHHHHEEGGGEEE--CGGGGTTSEEEECETTTS-HHHHHHHHHHHHH
T ss_pred             CCCccc-------CCCCcCHHHHhCCCcCCCcC-HHHHhcCCEEEechhhhcCHHHHHHHHHHHHC
Confidence            000000       00001111222111111111 11233557999999999999999999999986

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=6.7e-11  Score=116.87  Aligned_cols=199  Identities=16%  Similarity=0.256  Sum_probs=137.7

Q ss_pred             CCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      -..++-++|.++.++.+.+.+.+....|-++.|+||+|||.++..+|..+...+....                      
T Consensus       166 ~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~----------------------  223 (786)
T COG0542         166 EGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPES----------------------  223 (786)
T ss_pred             cCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHH----------------------
Confidence            3457889999998888888887766666789999999999999999998754432211                      


Q ss_pred             cccccceec-----CCC-CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHHH
Q 017844           89 LSSANHVEL-----SPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRRT  153 (365)
Q Consensus        89 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~~~~Ll~~  153 (365)
                      +.....+.+     .+. .+.......++.+++++...         +..|+||||+|.+-         .++.|.|...
T Consensus       224 L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~---------~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPa  294 (786)
T COG0542         224 LKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKS---------KNVILFIDEIHTIVGAGATEGGAMDAANLLKPA  294 (786)
T ss_pred             HcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcC---------CCeEEEEechhhhcCCCcccccccchhhhhHHH
Confidence            111111111     111 11111122344445554432         25799999999873         2245555555


Q ss_pred             HhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Q 017844          154 MEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS  224 (365)
Q Consensus       154 le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~~~~g~  224 (365)
                      |.  ....++|.+|+..+     .-++++-+||+.|.+..|+.++...+|+-...+    +++.++++++...+..|..-
T Consensus       295 LA--RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY  372 (786)
T COG0542         295 LA--RGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY  372 (786)
T ss_pred             Hh--cCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence            55  24678888887554     357899999999999999999999999866553    57899999999999977543


Q ss_pred             ------HHHHHHHHHHHHhcCC
Q 017844          225 ------LRRAILSFETCRVQQY  240 (365)
Q Consensus       225 ------lr~ai~~l~~~~~~~~  240 (365)
                            +-.||.+++.+++...
T Consensus       373 I~dR~LPDKAIDLiDeA~a~~~  394 (786)
T COG0542         373 IPDRFLPDKAIDLLDEAGARVR  394 (786)
T ss_pred             cccCCCCchHHHHHHHHHHHHH
Confidence                  3579999998876643

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=1.6e-11  Score=112.76  Aligned_cols=206  Identities=17%  Similarity=0.177  Sum_probs=130.8

Q ss_pred             CccccCHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCc--cceeccccceecCCCcceeccc
Q 017844           13 DQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE--KVKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~--~i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      ..+.|.+.....++.++..    +....+++.|-||+|||.+...+...+.+....  .++++|... ..+.    .+. 
T Consensus       150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl-~~~~----aiF-  223 (529)
T KOG2227|consen  150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL-TEAS----AIF-  223 (529)
T ss_pred             CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccc-cchH----HHH-
Confidence            4567777777777777653    344459999999999999998776655443332  355665443 1110    000 


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---cCceeE
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---SASCRL  163 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---~~~~~~  163 (365)
                      ..+    +-.+.....+...   ..+....+.....    .....-|+++||.|.|....+..|..+++.+   ..+..+
T Consensus       224 ~kI----~~~~~q~~~s~~~---~~~~~~~~~~h~~----q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iL  292 (529)
T KOG2227|consen  224 KKI----FSSLLQDLVSPGT---GMQHLEKFEKHTK----QSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIIL  292 (529)
T ss_pred             HHH----HHHHHHHhcCCch---hHHHHHHHHHHHh----cccceEEEEechhhHHhhcccceeeeehhcccCCcceeee
Confidence            000    0001000001011   1122222222111    1123468999999999888788888888764   345667


Q ss_pred             EEEecCCC---cccHHHhccc----eeEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHH---cCCCHHHHHHHH
Q 017844          164 ILCCNSSS---KVTEAIRSRC----LNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEK---SNRSLRRAILSF  232 (365)
Q Consensus       164 Il~t~~~~---~l~~~l~sR~----~~i~~~~~~~~~~~~iL~~~~~~~~~-~i~~~~~~~i~~~---~~g~lr~ai~~l  232 (365)
                      |.++|..+   ++++.|..|+    .++.|+|++.+++.+||+..+..+.. .+-+.+++.+|+.   ..||+|+|+..+
T Consensus       293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~  372 (529)
T KOG2227|consen  293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVC  372 (529)
T ss_pred             eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence            77788776   5788888865    48999999999999999998887654 3446688888874   579999999988


Q ss_pred             HHH
Q 017844          233 ETC  235 (365)
Q Consensus       233 ~~~  235 (365)
                      +.+
T Consensus       373 R~a  375 (529)
T KOG2227|consen  373 RRA  375 (529)
T ss_pred             HHH
Confidence            743

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.28  E-value=1.7e-10  Score=107.81  Aligned_cols=166  Identities=18%  Similarity=0.276  Sum_probs=98.8

Q ss_pred             CCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc
Q 017844           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (365)
Q Consensus        12 ~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   91 (365)
                      ++++++.+...+.+...+..++  +++|+||||+|||++|+.++..+..... ...+....+  ++....          
T Consensus       174 l~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~-~~~v~~VtF--HpsySY----------  238 (459)
T PRK11331        174 LNDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKA-PQRVNMVQF--HQSYSY----------  238 (459)
T ss_pred             hhcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcc-cceeeEEee--cccccH----------
Confidence            5667777888888877776554  4999999999999999999997644221 111111111  111110          


Q ss_pred             ccce-ecCCCCcCccc-hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-HHHHHHHHHhh------------
Q 017844           92 ANHV-ELSPSDAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-AQHSLRRTMEK------------  156 (365)
Q Consensus        92 ~~~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-~~~~Ll~~le~------------  156 (365)
                      .+++ .+.+...+... .....+++......       ..++.++||||+++-+.+ .+..++.+||.            
T Consensus       239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~-------p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~  311 (459)
T PRK11331        239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ-------PEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLT  311 (459)
T ss_pred             HHHhcccCCCCCCeEecCchHHHHHHHHHhc-------ccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeee
Confidence            1111 11222111110 11222333332221       124579999999988754 46667776652            


Q ss_pred             ----------hcCceeEEEEecCCC----cccHHHhccceeEEecC-CCHHHHHHHHH
Q 017844          157 ----------YSASCRLILCCNSSS----KVTEAIRSRCLNIRINS-PTEEQIVKVLE  199 (365)
Q Consensus       157 ----------~~~~~~~Il~t~~~~----~l~~~l~sR~~~i~~~~-~~~~~~~~iL~  199 (365)
                                .|.++.+|.|.|..+    .++.++++|+..+++.+ ++...+.+++.
T Consensus       312 y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~  369 (459)
T PRK11331        312 YSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL  369 (459)
T ss_pred             ccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence                      245677888888877    47899999999999987 45555555554

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.28  E-value=9e-11  Score=108.41  Aligned_cols=109  Identities=19%  Similarity=0.290  Sum_probs=80.7

Q ss_pred             CceEEEEeCCCCCC------------HHHHHHHHHHHhhhc----------CceeEEEEec----CCCcccHHHhccce-
Q 017844          130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYS----------ASCRLILCCN----SSSKVTEAIRSRCL-  182 (365)
Q Consensus       130 ~~~vliiDE~~~L~------------~~~~~~Ll~~le~~~----------~~~~~Il~t~----~~~~l~~~l~sR~~-  182 (365)
                      ...||+|||+|++.            ...|..||+++|...          .++.||+...    .+..+.|.+.-|+- 
T Consensus       247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi  326 (441)
T TIGR00390       247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI  326 (441)
T ss_pred             cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence            56799999999884            237889999998531          2334555433    35568999999995 


Q ss_pred             eEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhc
Q 017844          183 NIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCRVQ  238 (365)
Q Consensus       183 ~i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~~--------~g~lr~ai~~l~~~~~~  238 (365)
                      ++.+.+++.+++..+|..           .+..+|+  .++++++..||+.+        +--.|.+...++.+...
T Consensus       327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d  403 (441)
T TIGR00390       327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLED  403 (441)
T ss_pred             EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence            899999999999999832           2234565  57899999999964        45678888888876543

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.2e-10  Score=109.92  Aligned_cols=188  Identities=14%  Similarity=0.203  Sum_probs=121.2

Q ss_pred             CCCccccCHHHHHHHHHHHHc------------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844           11 TLDQVIVHQDIAQNLKKLVTE------------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~------------~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      .|+++-|-.++++.+.+.+.-            -+.+. +++|||||||||.+|-+++...   ....+.+         
T Consensus       665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~~~fisv---------  732 (952)
T KOG0735|consen  665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---NLRFISV---------  732 (952)
T ss_pred             CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEe---------
Confidence            588999999999988888742            12223 9999999999999999998742   0011111         


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HHH
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------REA  146 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~~  146 (365)
                                  ..+..+.   .-.| .....+|+++.....         .++.|+++||+|.+.           ...
T Consensus       733 ------------KGPElL~---KyIG-aSEq~vR~lF~rA~~---------a~PCiLFFDEfdSiAPkRGhDsTGVTDRV  787 (952)
T KOG0735|consen  733 ------------KGPELLS---KYIG-ASEQNVRDLFERAQS---------AKPCILFFDEFDSIAPKRGHDSTGVTDRV  787 (952)
T ss_pred             ------------cCHHHHH---HHhc-ccHHHHHHHHHHhhc---------cCCeEEEeccccccCcccCCCCCCchHHH
Confidence                        1111111   0011 122346666665443         456899999999874           346


Q ss_pred             HHHHHHHHhhh--cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 017844          147 QHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS  221 (365)
Q Consensus       147 ~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~  221 (365)
                      .|.|+.-|+.-  -.++.++.+|+.++-++|++.+-.   ..+..+.|+..++.++++......... ++..++.+|..+
T Consensus       788 VNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T  866 (952)
T KOG0735|consen  788 VNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKT  866 (952)
T ss_pred             HHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhc
Confidence            67777777643  234566666777778888987754   268889999999999999877644332 355677888866


Q ss_pred             CC----CHHHHHHHHHHHH
Q 017844          222 NR----SLRRAILSFETCR  236 (365)
Q Consensus       222 ~g----~lr~ai~~l~~~~  236 (365)
                      +|    |+...+...+..+
T Consensus       867 ~g~tgADlq~ll~~A~l~a  885 (952)
T KOG0735|consen  867 DGFTGADLQSLLYNAQLAA  885 (952)
T ss_pred             CCCchhhHHHHHHHHHHHH
Confidence            55    5544444444433

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.27  E-value=6.4e-11  Score=106.66  Aligned_cols=187  Identities=14%  Similarity=0.130  Sum_probs=108.6

Q ss_pred             cCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus         7 ~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      +.|+-=.+.+-.++....+..++..++  +++|.||||+|||++++.+|+.+..+-.   .+++...             
T Consensus        39 ~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l~~~~~---rV~~~~~-------------  100 (327)
T TIGR01650        39 HVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARLNWPCV---RVNLDSH-------------  100 (327)
T ss_pred             CCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHHCCCeE---EEEecCC-------------
Confidence            344444456667777777777776554  4999999999999999999998854321   1221110             


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh----------
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK----------  156 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~----------  156 (365)
                        ....+.+.....  ...+.....++     ...++.. ......++++||++...++.++.|..+||.          
T Consensus       101 --l~~~DliG~~~~--~l~~g~~~~~f-----~~GpL~~-A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~  170 (327)
T TIGR01650       101 --VSRIDLVGKDAI--VLKDGKQITEF-----RDGILPW-ALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQN  170 (327)
T ss_pred             --CChhhcCCCcee--eccCCcceeEE-----ecCcchh-HHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCc
Confidence              000000100000  00000000000     0001000 012336799999999999999999999873          


Q ss_pred             ----hcCceeEEEEecCCC------------cccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017844          157 ----YSASCRLILCCNSSS------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (365)
Q Consensus       157 ----~~~~~~~Il~t~~~~------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~  219 (365)
                          +.+..++|.++|...            .++++.++|+. ++.+..|+.++-.+++...+....-..+++.++.+++
T Consensus       171 ~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~  250 (327)
T TIGR01650       171 RVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVR  250 (327)
T ss_pred             eEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHH
Confidence                112455677777533            36899999997 5689999999999999865421110113455666665


Q ss_pred             Hc
Q 017844          220 KS  221 (365)
Q Consensus       220 ~~  221 (365)
                      .+
T Consensus       251 la  252 (327)
T TIGR01650       251 VA  252 (327)
T ss_pred             HH
Confidence            43

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.27  E-value=1.5e-11  Score=101.06  Aligned_cols=151  Identities=17%  Similarity=0.231  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+...++.|+.  ..+.||+|+||||++|.|+. +..|+.+.+.+++.+.-..|           ......+.+...
T Consensus        17 AvrdVSF~ae~Gei--~GlLG~NGAGKTT~LRmiat-lL~P~~G~v~idg~d~~~~p-----------~~vrr~IGVl~~   82 (245)
T COG4555          17 AVRDVSFEAEEGEI--TGLLGENGAGKTTLLRMIAT-LLIPDSGKVTIDGVDTVRDP-----------SFVRRKIGVLFG   82 (245)
T ss_pred             hhhheeEEeccceE--EEEEcCCCCCchhHHHHHHH-hccCCCceEEEeecccccCh-----------HHHhhhcceecC
Confidence            45555555667776  78999999999999999998 77899999988875441111           112334556666


Q ss_pred             CcCccchhHHHHHHHHHHhcCCC---------------------------CCC------------CCCCceEEEEeCC-C
Q 017844          101 DAGFQDRYVVQEVIKEMAKNRPI---------------------------DTK------------GKRGFKVLVLNEV-D  140 (365)
Q Consensus       101 ~~~~~~~~~~~~~l~~~~~~~~~---------------------------~~~------------~~~~~~vliiDE~-~  140 (365)
                      ..+.+.+.+.++.+..++....+                           .+|            .-.+++++++||+ .
T Consensus        83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s  162 (245)
T COG4555          83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTS  162 (245)
T ss_pred             CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence            67778888888888776654332                           111            1247899999998 8


Q ss_pred             CCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEE
Q 017844          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (365)
Q Consensus       141 ~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~  185 (365)
                      .|+-.+...+.+.+.......+.|+.+++.-.-.+++.+|+.+++
T Consensus       163 GLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh  207 (245)
T COG4555         163 GLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLH  207 (245)
T ss_pred             CccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEe
Confidence            898888888888888776656666666666555578888876544

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.27  E-value=1.6e-10  Score=108.59  Aligned_cols=205  Identities=17%  Similarity=0.178  Sum_probs=128.0

Q ss_pred             CCCCCccccCHHHHHHHHHHHHcC-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVTEQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~~~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      +-+|++++|.......+...++.. ..+ .+++.|++||||.-+|++|-+.--......+.++|..+   |         
T Consensus       241 ~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi---P---------  308 (560)
T COG3829         241 KYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI---P---------  308 (560)
T ss_pred             ccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC---C---------
Confidence            348999999877777666666543 222 39999999999999999998743333334455555332   0         


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------  157 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------  157 (365)
                      ..+-....+.+....+....           ...++ +.--..+..-+|+||+..|+...|..||+.|++.         
T Consensus       309 e~LlESELFGye~GAFTGA~-----------~~GK~-GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~  376 (560)
T COG3829         309 ETLLESELFGYEKGAFTGAS-----------KGGKP-GLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTK  376 (560)
T ss_pred             HHHHHHHHhCcCCccccccc-----------cCCCC-cceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCC
Confidence            00011111222222111100           00000 0000123357999999999999999999999863         


Q ss_pred             --cCceeEEEEecCCC-------cccHHHhccceeEEecCCC----HHHHHHHHHHHHH----HcC--C-CCCHHHHHHH
Q 017844          158 --SASCRLILCCNSSS-------KVTEAIRSRCLNIRINSPT----EEQIVKVLEFIAK----KEG--L-QLPSGFATRL  217 (365)
Q Consensus       158 --~~~~~~Il~t~~~~-------~l~~~l~sR~~~i~~~~~~----~~~~~~iL~~~~~----~~~--~-~i~~~~~~~i  217 (365)
                        +.++++|.+||...       .+-..+.-|..++.+.-|+    .+++-......+.    +.+  + .++++++..+
T Consensus       377 ~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L  456 (560)
T COG3829         377 PIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALL  456 (560)
T ss_pred             ceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHH
Confidence              34678998888764       3556677777665554443    3344444443333    333  2 3889999998


Q ss_pred             HH-HcCCCHHHHHHHHHHHHh
Q 017844          218 AE-KSNRSLRRAILSFETCRV  237 (365)
Q Consensus       218 ~~-~~~g~lr~ai~~l~~~~~  237 (365)
                      .+ .+.||+|+..|+++.+..
T Consensus       457 ~~y~WPGNVRELeNviER~v~  477 (560)
T COG3829         457 LRYDWPGNVRELENVIERAVN  477 (560)
T ss_pred             HhCCCCchHHHHHHHHHHHHh
Confidence            88 689999999999999875

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.26  E-value=1e-11  Score=103.27  Aligned_cols=160  Identities=16%  Similarity=0.277  Sum_probs=99.0

Q ss_pred             CCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   90 (365)
                      ++..-+|..++++.+.-.+..|..  +.+.||+|+||||++|++.. |..++.+.+.+++.......     ++  ..  
T Consensus         7 ~l~K~fg~~~VLkgi~l~v~~Gev--v~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~g~~~~~~~-----~~--~~--   74 (240)
T COG1126           7 NLSKSFGDKEVLKGISLSVEKGEV--VVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKK-----DI--LK--   74 (240)
T ss_pred             eeeEEeCCeEEecCcceeEcCCCE--EEEECCCCCCHHHHHHHHHC-CcCCCCceEEECCEeccchh-----hH--HH--
Confidence            344556777888888777878877  99999999999999999987 88899999999884330000     00  00  


Q ss_pred             cccceecCCCCcCccchhH-------------------HH----HHHHHH-----HhcCCCCCCC------------CCC
Q 017844           91 SANHVELSPSDAGFQDRYV-------------------VQ----EVIKEM-----AKNRPIDTKG------------KRG  130 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-------------------~~----~~l~~~-----~~~~~~~~~~------------~~~  130 (365)
                      -...+.++.+.+..+...+                   .+    +++..+     +...|..+|+            .-+
T Consensus        75 ~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~  154 (240)
T COG1126          75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD  154 (240)
T ss_pred             HHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence            0001111111111111111                   11    111111     1112222232            227


Q ss_pred             ceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       131 ~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ++++++||+ ..|+++.....+..|.+........++.+|.-.+-..+-+|..
T Consensus       155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrvi  207 (240)
T COG1126         155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI  207 (240)
T ss_pred             CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEE
Confidence            899999999 8899999999999999887666555555566666677777763

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.25  E-value=2.6e-10  Score=105.44  Aligned_cols=109  Identities=21%  Similarity=0.305  Sum_probs=80.4

Q ss_pred             CceEEEEeCCCCCC------------HHHHHHHHHHHhhhc----------CceeEEEEec----CCCcccHHHhccce-
Q 017844          130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYS----------ASCRLILCCN----SSSKVTEAIRSRCL-  182 (365)
Q Consensus       130 ~~~vliiDE~~~L~------------~~~~~~Ll~~le~~~----------~~~~~Il~t~----~~~~l~~~l~sR~~-  182 (365)
                      ...||+|||+|++.            ...|..||+++|...          .++.||+...    .++.+.|.+.-|+. 
T Consensus       249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi  328 (443)
T PRK05201        249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI  328 (443)
T ss_pred             cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence            55799999999884            247889999998631          2333444432    34568899999995 


Q ss_pred             eEEecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhc
Q 017844          183 NIRINSPTEEQIVKVLEF----I-------AKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCRVQ  238 (365)
Q Consensus       183 ~i~~~~~~~~~~~~iL~~----~-------~~~~~~--~i~~~~~~~i~~~~--------~g~lr~ai~~l~~~~~~  238 (365)
                      ++.+.+++.+++.++|..    .       +..+|+  .++++++..||+.+        +--.|.+...++.+...
T Consensus       329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d  405 (443)
T PRK05201        329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED  405 (443)
T ss_pred             EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence            899999999999999843    2       234565  58899999999954        45678888888876544

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.24  E-value=7.4e-12  Score=113.17  Aligned_cols=158  Identities=16%  Similarity=0.213  Sum_probs=100.7

Q ss_pred             CCCcccc-CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844           11 TLDQVIV-HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (365)
Q Consensus        11 ~~~~iig-~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (365)
                      ++...+| ...+++.+.-.+..|..  +.|.||+|+||||+.+++++ +..++.+.+.+++......           ..
T Consensus         9 ~l~k~~~~~~~~l~~vs~~i~~Gei--~gllG~NGAGKTTllk~l~g-l~~p~~G~i~i~G~~~~~~-----------~~   74 (293)
T COG1131           9 NLTKKYGGDKTALDGVSFEVEPGEI--FGLLGPNGAGKTTLLKILAG-LLKPTSGEILVLGYDVVKE-----------PA   74 (293)
T ss_pred             ceEEEeCCCCEEEeceeEEEcCCeE--EEEECCCCCCHHHHHHHHhC-CcCCCceEEEEcCEeCccC-----------HH
Confidence            3444455 46666777767777776  89999999999999999999 6678888888887543000           00


Q ss_pred             ccccceecCCCCcCccchhHHHHHHHHHHhcCCC---------------------------CCC------------CCCC
Q 017844           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI---------------------------DTK------------GKRG  130 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------~~~------------~~~~  130 (365)
                      .....+.+.++....++..++++.++.++.....                           .+|            ..++
T Consensus        75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~  154 (293)
T COG1131          75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD  154 (293)
T ss_pred             HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence            1122244444444444444444444333322210                           011            1247


Q ss_pred             ceEEEEeCC-CCCCHHHHHHHHHHHhhhcCce-eEEEEecCCCcccHHHhccce
Q 017844          131 FKVLVLNEV-DKLSREAQHSLRRTMEKYSASC-RLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       131 ~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~-~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ++++|+||+ ..|++.....+.+.|.+..... ..|++++|...-...+.+|..
T Consensus       155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~  208 (293)
T COG1131         155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI  208 (293)
T ss_pred             CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence            899999999 8899999999999999876654 456666655544455566653

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=99.22  E-value=4.1e-10  Score=103.05  Aligned_cols=208  Identities=16%  Similarity=0.166  Sum_probs=118.9

Q ss_pred             CCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceecccc-
Q 017844           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELT-   87 (365)
Q Consensus        12 ~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~-   87 (365)
                      |.-++||+..+..|-...-...+..+||.|+.|+||||++|+++..| .+-..   +-++.|+++|...   |.+|... 
T Consensus        16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LL-p~~~~---V~gc~f~cdP~~P~~~c~~c~~k~   91 (423)
T COG1239          16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLL-PEIEV---VIGCPFNCDPDDPEEMCDECRAKG   91 (423)
T ss_pred             hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhC-Cccce---ecCCCCCCCCCChhhhhHHHHhhc
Confidence            66789999988877655445666669999999999999999999844 33221   2255565666554   1111000 


Q ss_pred             -----ccccccceecCCCCcCccc-----hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           88 -----TLSSANHVELSPSDAGFQD-----RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        88 -----~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                           .......+.+.....+...     ...+...++.--.....++-...++.|+++||+..|+...++.||..+++-
T Consensus        92 ~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG  171 (423)
T COG1239          92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEG  171 (423)
T ss_pred             cccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhC
Confidence                 0000111122211111111     111222222100111111223557789999999999999999999999862


Q ss_pred             -------------cCceeEEEEecCCC-cccHHHhccce-eEEec-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 017844          158 -------------SASCRLILCCNSSS-KVTEAIRSRCL-NIRIN-SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS  221 (365)
Q Consensus       158 -------------~~~~~~Il~t~~~~-~l~~~l~sR~~-~i~~~-~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~  221 (365)
                                   +.+..+|.+.|..+ .+-+.|++||. .+... +.+.++..+++.+....+  ..++..++.++. .
T Consensus       172 ~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~--~~Pe~f~~~~~~-~  248 (423)
T COG1239         172 VNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFE--AVPEAFLEKYAD-A  248 (423)
T ss_pred             CceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhh--cCcHHHHHHHHH-H
Confidence                         22333444444333 68899999974 56654 456777888888776552  333444444443 3


Q ss_pred             CCCHH
Q 017844          222 NRSLR  226 (365)
Q Consensus       222 ~g~lr  226 (365)
                      ...+|
T Consensus       249 ~~~lR  253 (423)
T COG1239         249 QRALR  253 (423)
T ss_pred             HHHHH
Confidence            34555

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=8.8e-11  Score=102.51  Aligned_cols=176  Identities=18%  Similarity=0.264  Sum_probs=113.3

Q ss_pred             CCCccccCHHHHHHHHHHHH----------c-C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844           11 TLDQVIVHQDIAQNLKKLVT----------E-Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~----------~-~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      +|+.+-|-......+++.+.          . | ..|. ++||||||+|||.++++++..+.+.           +    
T Consensus       130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n-----------f----  194 (388)
T KOG0651|consen  130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVN-----------F----  194 (388)
T ss_pred             CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCc-----------e----
Confidence            78888888888888887663          1 2 2333 9999999999999999999976221           1    


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------HHH
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------REA  146 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------~~~  146 (365)
                               -...++..++    ..-......+++.+....+.         .+.|+++||+|...           ...
T Consensus       195 ---------l~v~ss~lv~----kyiGEsaRlIRemf~yA~~~---------~pciifmdeiDAigGRr~se~Ts~drei  252 (388)
T KOG0651|consen  195 ---------LKVVSSALVD----KYIGESARLIRDMFRYAREV---------IPCIIFMDEIDAIGGRRFSEGTSSDREI  252 (388)
T ss_pred             ---------EEeeHhhhhh----hhcccHHHHHHHHHHHHhhh---------CceEEeehhhhhhccEEeccccchhHHH
Confidence                     1111111111    11112223456665555443         33799999999762           345


Q ss_pred             HHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHH
Q 017844          147 QHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATR  216 (365)
Q Consensus       147 ~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~--~~~i~~~~~~~  216 (365)
                      +..|.+++++.     -..+++|+++|+++.+.+++.+-.   ..++.+.|+......+++-..+.-  ...++.+++-.
T Consensus       253 qrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK  332 (388)
T KOG0651|consen  253 QRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILK  332 (388)
T ss_pred             HHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHH
Confidence            66677776643     346899999999999999997744   267777777766666665443321  12566777777


Q ss_pred             HHHHcCC
Q 017844          217 LAEKSNR  223 (365)
Q Consensus       217 i~~~~~g  223 (365)
                      +++..+|
T Consensus       333 ~~d~f~g  339 (388)
T KOG0651|consen  333 LVDGFNG  339 (388)
T ss_pred             HHhccCh
Confidence            7776655

>PHA02244 ATPase-like protein

Probab=99.20  E-value=1.2e-09  Score=99.69  Aligned_cols=132  Identities=15%  Similarity=0.151  Sum_probs=82.8

Q ss_pred             HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc
Q 017844           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (365)
Q Consensus        23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (365)
                      ..+..++..+..  ++|+||+|||||++|++++..+..+.   +.+++..          +.       .....+.... 
T Consensus       110 ~ri~r~l~~~~P--VLL~GppGtGKTtLA~aLA~~lg~pf---v~In~l~----------d~-------~~L~G~i~~~-  166 (383)
T PHA02244        110 ADIAKIVNANIP--VFLKGGAGSGKNHIAEQIAEALDLDF---YFMNAIM----------DE-------FELKGFIDAN-  166 (383)
T ss_pred             HHHHHHHhcCCC--EEEECCCCCCHHHHHHHHHHHhCCCE---EEEecCh----------HH-------Hhhccccccc-
Confidence            455556655543  99999999999999999999753221   1111100          00       0000000000 


Q ss_pred             CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------hcCceeEEEEecCC-
Q 017844          103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK-----------YSASCRLILCCNSS-  170 (365)
Q Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~-----------~~~~~~~Il~t~~~-  170 (365)
                      +...   ...++..+           .+..+++|||++.+.++++..|...+++           .+.+.++|+++|.. 
T Consensus       167 g~~~---dgpLl~A~-----------~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~  232 (383)
T PHA02244        167 GKFH---ETPFYEAF-----------KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLG  232 (383)
T ss_pred             cccc---chHHHHHh-----------hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCc
Confidence            0000   00111111           1336999999999999999999999863           13567899988863 


Q ss_pred             ----------CcccHHHhccceeEEecCCCH
Q 017844          171 ----------SKVTEAIRSRCLNIRINSPTE  191 (365)
Q Consensus       171 ----------~~l~~~l~sR~~~i~~~~~~~  191 (365)
                                ..+.+++++||..+.|..|+.
T Consensus       233 ~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~  263 (383)
T PHA02244        233 KGADHIYVARNKIDGATLDRFAPIEFDYDEK  263 (383)
T ss_pred             cCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence                      357899999999999998874

>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]

Probab=99.20  E-value=7.8e-09  Score=95.58  Aligned_cols=171  Identities=16%  Similarity=0.161  Sum_probs=128.5

Q ss_pred             CCCceEEEEeCCCCCC-HHHHHHHHHHHhhhc-CceeEEEEecCCCc---ccHHHhcc--ceeEEecCCCHHHHHHHHHH
Q 017844          128 KRGFKVLVLNEVDKLS-REAQHSLRRTMEKYS-ASCRLILCCNSSSK---VTEAIRSR--CLNIRINSPTEEQIVKVLEF  200 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~-~~~~~~Ll~~le~~~-~~~~~Il~t~~~~~---l~~~l~sR--~~~i~~~~~~~~~~~~iL~~  200 (365)
                      .+..++++|..+.... .+....+......++ ..+.+++.++..++   ....+..-  +.++.+.+++..++.+++..
T Consensus        72 F~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~  151 (334)
T COG1466          72 FGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKK  151 (334)
T ss_pred             ccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHH
Confidence            4455899999987654 444555666666666 45555555544442   22222222  56899999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC--CCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHH
Q 017844          201 IAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP--FKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQV  276 (365)
Q Consensus       201 ~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~--~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~  276 (365)
                      .+.+.|+.+++++++.++...+||++.+.+.+++++.+...  ++.++  .......+..+++++++++.+    +..++
T Consensus       152 ~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g----~~~~a  227 (334)
T COG1466         152 RAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKG----DVKKA  227 (334)
T ss_pred             HHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCC----CHHHH
Confidence            99999999999999999999999999999999999988664  33333  222333445678999999985    44667


Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHH
Q 017844          277 RGKLYELLLNCVPPVVVLKRLLYELL  302 (365)
Q Consensus       277 ~~~l~~l~~~~~~~~~il~~l~~~l~  302 (365)
                      ...+++++..|++|..|+..+.+++.
T Consensus       228 ~~~l~~L~~~ge~p~~il~~l~~~f~  253 (334)
T COG1466         228 LRLLRDLLLEGEEPLKLLAALTRQFR  253 (334)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            77788899999999999999988776

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.19  E-value=1.2e-09  Score=105.47  Aligned_cols=205  Identities=15%  Similarity=0.115  Sum_probs=120.6

Q ss_pred             CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      .+..++|.......+...+..  ....+++++|++|+||+++|+.+...-.......+.++|..+   +. .       .
T Consensus       137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~---~~-~-------~  205 (445)
T TIGR02915       137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAI---PE-N-------L  205 (445)
T ss_pred             cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCC---Ch-H-------H
Confidence            456788877777666666643  223348999999999999999997743222222233333221   00 0       0


Q ss_pred             cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----------
Q 017844           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------  158 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----------  158 (365)
                      + ....+..........             .....+........+++|||++.|+...|..|++.+++..          
T Consensus       206 ~-~~~lfg~~~~~~~~~-------------~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~  271 (445)
T TIGR02915       206 L-ESELFGYEKGAFTGA-------------VKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEI  271 (445)
T ss_pred             H-HHHhcCCCCCCcCCC-------------ccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCcee
Confidence            0 000000000000000             0000000012334689999999999999999999998632          


Q ss_pred             -CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHH----HHHHHcC---CCCCHHHHHHHHH
Q 017844          159 -ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLE----FIAKKEG---LQLPSGFATRLAE  219 (365)
Q Consensus       159 -~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~----~~~~~~~---~~i~~~~~~~i~~  219 (365)
                       .++++|++++...       .+.+.+..|+.  .|.++|+..  +++..+..    +.+.+.+   ..++++++..+..
T Consensus       272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~  351 (445)
T TIGR02915       272 PVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEA  351 (445)
T ss_pred             eeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh
Confidence             2567888887652       35566777775  455555532  23333333    3333333   4689999999988


Q ss_pred             H-cCCCHHHHHHHHHHHHhcCC
Q 017844          220 K-SNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       220 ~-~~g~lr~ai~~l~~~~~~~~  240 (365)
                      . +.||+|++.+.++.++..+.
T Consensus       352 ~~wpgNvreL~~~i~~a~~~~~  373 (445)
T TIGR02915       352 HAWPGNVRELENKVKRAVIMAE  373 (445)
T ss_pred             CCCCChHHHHHHHHHHHHHhCC
Confidence            4 69999999999998876543

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.18  E-value=6e-11  Score=96.65  Aligned_cols=160  Identities=17%  Similarity=0.274  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (365)
                      ..+++.+...+..|.+  ++++||+|+||||+.+.|.++ ..++.+.+.+++.+. ..-.++...+  -    ...+.++
T Consensus        15 ~~aL~~vs~~i~~Gef--~fl~GpSGAGKSTllkLi~~~-e~pt~G~i~~~~~dl-~~l~~~~iP~--L----RR~IGvV   84 (223)
T COG2884          15 REALRDVSFHIPKGEF--VFLTGPSGAGKSTLLKLIYGE-ERPTRGKILVNGHDL-SRLKGREIPF--L----RRQIGVV   84 (223)
T ss_pred             chhhhCceEeecCceE--EEEECCCCCCHHHHHHHHHhh-hcCCCceEEECCeec-ccccccccch--h----hheeeeE
Confidence            4566777667777777  899999999999999999984 578888888888765 1111111000  0    0112222


Q ss_pred             CCCcCcc------------------chhHH----HHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC
Q 017844           99 PSDAGFQ------------------DRYVV----QEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV  139 (365)
Q Consensus        99 ~~~~~~~------------------~~~~~----~~~l~~~~-----~~~~~~~~~------------~~~~~vliiDE~  139 (365)
                      .++...-                  ....+    .+.++...     ...|..+|+            -.++.+++-||+
T Consensus        85 FQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEP  164 (223)
T COG2884          85 FQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEP  164 (223)
T ss_pred             eeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence            2222111                  11111    12222211     111112222            247899999999


Q ss_pred             -CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecC
Q 017844          140 -DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINS  188 (365)
Q Consensus       140 -~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~  188 (365)
                       .+|+++....+++++++.......|+++++...+..+.+.|+..++-..
T Consensus       165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Gr  214 (223)
T COG2884         165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGR  214 (223)
T ss_pred             CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCE
Confidence             8899999999999999987777777777787888888888887665443

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.17  E-value=3e-10  Score=105.40  Aligned_cols=204  Identities=16%  Similarity=0.143  Sum_probs=128.6

Q ss_pred             CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      .+.++||+..+...+...++-  .....+||.|++||||.-+|++|-+.-.......+++||..+   |.         .
T Consensus       221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl---Pe---------s  288 (550)
T COG3604         221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL---PE---------S  288 (550)
T ss_pred             ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc---ch---------H
Confidence            567899998888877777653  222339999999999999999998743333444455665433   00         0


Q ss_pred             cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-----------
Q 017844           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----------  157 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-----------  157 (365)
                      +...+.+......+.           ..+.....- + -..+..-+++||+.-|+...|..|++.|.+.           
T Consensus       289 LlESELFGHeKGAFT-----------GA~~~r~Gr-F-ElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~i  355 (550)
T COG3604         289 LLESELFGHEKGAFT-----------GAINTRRGR-F-ELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTI  355 (550)
T ss_pred             HHHHHHhcccccccc-----------cchhccCcc-e-eecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCcee
Confidence            000011111111000           000110000 0 0123357999999999999999999999753           


Q ss_pred             cCceeEEEEecCCC-------cccHHHhccceeEEecCCCHHH-------HH-HHHHHHHHHcCC---CCCHHHHHHHHH
Q 017844          158 SASCRLILCCNSSS-------KVTEAIRSRCLNIRINSPTEEQ-------IV-KVLEFIAKKEGL---QLPSGFATRLAE  219 (365)
Q Consensus       158 ~~~~~~Il~t~~~~-------~l~~~l~sR~~~i~~~~~~~~~-------~~-~iL~~~~~~~~~---~i~~~~~~~i~~  219 (365)
                      +-++++|.+||..-       ++-..+.-|..++.+.-|+..+       +. .++++...+.|.   .+++++++.+.+
T Consensus       356 kVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~  435 (550)
T COG3604         356 KVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS  435 (550)
T ss_pred             EEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence            23578888888653       3556677777666655454333       22 233444444444   689999999998


Q ss_pred             -HcCCCHHHHHHHHHHHHhcC
Q 017844          220 -KSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       220 -~~~g~lr~ai~~l~~~~~~~  239 (365)
                       .+.||+|+..|+++.++..+
T Consensus       436 y~wPGNVRELen~veRavlla  456 (550)
T COG3604         436 YEWPGNVRELENVVERAVLLA  456 (550)
T ss_pred             CCCCCcHHHHHHHHHHHHHHh
Confidence             57899999999999988755

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.17  E-value=6.1e-09  Score=88.06  Aligned_cols=190  Identities=18%  Similarity=0.262  Sum_probs=122.2

Q ss_pred             ccCCCCCCccccCHHHHHHHH----HHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            6 KYRPKTLDQVIVHQDIAQNLK----KLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         6 k~rP~~~~~iig~~~~~~~l~----~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .+.|-.+.+++|-+..++.|.    ..+++..-.|+|++|..|+|||++++++..++......-                
T Consensus        53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL----------------  116 (287)
T COG2607          53 DPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRL----------------  116 (287)
T ss_pred             CCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeE----------------
Confidence            445567788899766655444    344333334599999999999999999998775443221                


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHh----h
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTME----K  156 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-~~~~~~Ll~~le----~  156 (365)
                                   +++...+..     ..-.+++.+..        ...+-|++.|+...=. ..+...|-..||    .
T Consensus       117 -------------VEV~k~dl~-----~Lp~l~~~Lr~--------~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~  170 (287)
T COG2607         117 -------------VEVDKEDLA-----TLPDLVELLRA--------RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEG  170 (287)
T ss_pred             -------------EEEcHHHHh-----hHHHHHHHHhc--------CCceEEEEecCCCCCCCchHHHHHHHHhcCCccc
Confidence                         333332221     12234444332        2345689999975433 344555555554    4


Q ss_pred             hcCceeEEEEecCCCcccH----------------------HHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 017844          157 YSASCRLILCCNSSSKVTE----------------------AIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (365)
Q Consensus       157 ~~~~~~~Il~t~~~~~l~~----------------------~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~  213 (365)
                      .|.++.|..++|...-++.                      .+.+|+ ..+.|.+++.++-.+++...++..|+.++++.
T Consensus       171 rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~  250 (287)
T COG2607         171 RPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEE  250 (287)
T ss_pred             CCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence            5667777777765442221                      234465 47999999999999999999999999998755


Q ss_pred             HHH-----HHHHcCCCHHHHHHHHHHHHh
Q 017844          214 ATR-----LAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       214 ~~~-----i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      ++.     -....+.+-|.|-+..+.++.
T Consensus       251 l~~eAl~WAt~rg~RSGR~A~QF~~~~~g  279 (287)
T COG2607         251 LHAEALQWATTRGGRSGRVAWQFIRDLAG  279 (287)
T ss_pred             HHHHHHHHHHhcCCCccHhHHHHHHHHHh
Confidence            443     334556788888888776654

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.16  E-value=7.9e-10  Score=102.14  Aligned_cols=151  Identities=23%  Similarity=0.340  Sum_probs=90.3

Q ss_pred             cccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccc
Q 017844           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH   94 (365)
Q Consensus        15 iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (365)
                      ++|++.+...+..++..+..  ++|.||||+|||++++.+|+.+..+   .+.+.+..                      
T Consensus        26 ~~g~~~~~~~~l~a~~~~~~--vll~G~PG~gKT~la~~lA~~l~~~---~~~i~~t~----------------------   78 (329)
T COG0714          26 VVGDEEVIELALLALLAGGH--VLLEGPPGVGKTLLARALARALGLP---FVRIQCTP----------------------   78 (329)
T ss_pred             eeccHHHHHHHHHHHHcCCC--EEEECCCCccHHHHHHHHHHHhCCC---eEEEecCC----------------------
Confidence            67888888777777766654  9999999999999999999977421   11222211                      


Q ss_pred             eecCCCCcCccchhHHHHHHHHHH----hcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----------C-
Q 017844           95 VELSPSDAGFQDRYVVQEVIKEMA----KNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------A-  159 (365)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----------~-  159 (365)
                       ++.+++.-+..  ..........    ...++  ..... .++++||+++.++..+++|+..|++..          . 
T Consensus        79 -~l~p~d~~G~~--~~~~~~~~~~~~~~~~gpl--~~~~~-~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~  152 (329)
T COG0714          79 -DLLPSDLLGTY--AYAALLLEPGEFRFVPGPL--FAAVR-VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLP  152 (329)
T ss_pred             -CCCHHHhcCch--hHhhhhccCCeEEEecCCc--ccccc-eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCC
Confidence             11111111110  0000000000    00111  01111 599999999999999999999998721          1 


Q ss_pred             ceeEEEEe-c-----CCCcccHHHhccc-eeEEecCCCHHHHHHHH
Q 017844          160 SCRLILCC-N-----SSSKVTEAIRSRC-LNIRINSPTEEQIVKVL  198 (365)
Q Consensus       160 ~~~~Il~t-~-----~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL  198 (365)
                      ...++++| |     ....+++++++|| ..+.++.|+.++...++
T Consensus       153 ~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i  198 (329)
T COG0714         153 PPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII  198 (329)
T ss_pred             CCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence            11234444 4     2235899999999 78999988444444433

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.14  E-value=7.4e-11  Score=102.22  Aligned_cols=157  Identities=18%  Similarity=0.293  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc---------eecCCCcceeccccccc
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW---------KIDAGSRNIDLELTTLS   90 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~   90 (365)
                      .+++.+.-.+..|.+  +.+.||+|+||||+++++.+ +..|..+.+.+.+...         ++.|.....+.. ...+
T Consensus        18 ~vl~~i~l~v~~G~~--~~iiGPNGaGKSTLlK~iLG-ll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~-fP~t   93 (254)
T COG1121          18 PVLEDISLSVEKGEI--TALIGPNGAGKSTLLKAILG-LLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRS-FPIT   93 (254)
T ss_pred             eeeeccEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCcCCcceEEEccccccccccCCeEEEcCcccccCCC-CCcC
Confidence            466666666777766  89999999999999999999 6788888888776532         222222111110 0000


Q ss_pred             cccceecCCC-CcCc------cchhHHHHHHHHHHhc----CCC-CCC------------CCCCceEEEEeCC-CCCCHH
Q 017844           91 SANHVELSPS-DAGF------QDRYVVQEVIKEMAKN----RPI-DTK------------GKRGFKVLVLNEV-DKLSRE  145 (365)
Q Consensus        91 ~~~~~~~~~~-~~~~------~~~~~~~~~l~~~~~~----~~~-~~~------------~~~~~~vliiDE~-~~L~~~  145 (365)
                      ..+++.+..- ..+.      .+...+.+.++.+...    +++ .+|            ..++++++++||+ ..++..
T Consensus        94 V~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~  173 (254)
T COG1121          94 VKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA  173 (254)
T ss_pred             HHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHH
Confidence            0011111100 0010      1112333333332111    111 112            2357899999998 889999


Q ss_pred             HHHHHHHHHhhhcCc-eeEEEEecCCCcccHHHhccc
Q 017844          146 AQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRC  181 (365)
Q Consensus       146 ~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~~~l~sR~  181 (365)
                      .+..+..+|.+.... ..+++++++... ..+..+|.
T Consensus       174 ~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~v  209 (254)
T COG1121         174 GQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRV  209 (254)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEE
Confidence            999999999887654 445555555543 34444554

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.13  E-value=2.6e-09  Score=103.82  Aligned_cols=204  Identities=16%  Similarity=0.167  Sum_probs=121.6

Q ss_pred             CCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844           11 TLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      .+.+++|.......+...+..  ....+++++|++|+|||++|+++...........+.++|..+ .  .        ..
T Consensus       136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~-~--~--------~~  204 (469)
T PRK10923        136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI-P--K--------DL  204 (469)
T ss_pred             ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCC-C--H--------HH
Confidence            467788887766666555543  222339999999999999999998743322223333333221 0  0        00


Q ss_pred             cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----------
Q 017844           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----------  158 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----------  158 (365)
                      + ....+...   .+.+..          +.....+.........++|||++.|+...|..|++.+++..          
T Consensus       205 ~-~~~lfg~~---~g~~~~----------~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~  270 (469)
T PRK10923        205 I-ESELFGHE---KGAFTG----------ANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPV  270 (469)
T ss_pred             H-HHHhcCCC---CCCCCC----------CCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence            0 00000000   000000          00000000011223578999999999999999999998632          


Q ss_pred             -CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHHH----HcCC---CCCHHHHHHHHH
Q 017844          159 -ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAK----KEGL---QLPSGFATRLAE  219 (365)
Q Consensus       159 -~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~~----~~~~---~i~~~~~~~i~~  219 (365)
                       .++++|++++...       .+.+.+..|+.  .|.++|+..  +++..++...++    +.+.   .++++++..+.+
T Consensus       271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~  350 (469)
T PRK10923        271 KVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR  350 (469)
T ss_pred             EeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence             2457888887542       35577888874  566666643  445545444433    3332   588999999988


Q ss_pred             -HcCCCHHHHHHHHHHHHhcC
Q 017844          220 -KSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       220 -~~~g~lr~ai~~l~~~~~~~  239 (365)
                       .+.||+|+..+.++.++..+
T Consensus       351 ~~wpgNv~eL~~~i~~~~~~~  371 (469)
T PRK10923        351 LAWPGNVRQLENTCRWLTVMA  371 (469)
T ss_pred             CCCCChHHHHHHHHHHHHHhC
Confidence             57999999999999887654

>PRK12377 putative replication protein; Provisional

Probab=99.13  E-value=1.1e-09  Score=96.06  Aligned_cols=152  Identities=18%  Similarity=0.270  Sum_probs=87.2

Q ss_pred             cccCCCCCCcccc----CHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844            5 DKYRPKTLDQVIV----HQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus         5 ~k~rP~~~~~iig----~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      ..++..+|+.+..    +..++......+..  ....+++|+||+|+|||+++.++++.+.......+++....+     
T Consensus        66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l-----  140 (248)
T PRK12377         66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV-----  140 (248)
T ss_pred             cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH-----
Confidence            3456678888863    34455555544432  222459999999999999999999988643322111111000     


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC--CCCCHHHHHHHHHHHhh
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTMEK  156 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~--~~L~~~~~~~Ll~~le~  156 (365)
                                      +........  +.....+.++.+           .+.++|||||+  +..+...+..|..+++.
T Consensus       141 ----------------~~~l~~~~~--~~~~~~~~l~~l-----------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~  191 (248)
T PRK12377        141 ----------------MSRLHESYD--NGQSGEKFLQEL-----------CKVDLLVLDEIGIQRETKNEQVVLNQIIDR  191 (248)
T ss_pred             ----------------HHHHHHHHh--ccchHHHHHHHh-----------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence                            000000000  000011222221           34589999999  55677888899999987


Q ss_pred             hcC-ceeEEEEecCCC-----cccHHHhccc-----eeEEecCCC
Q 017844          157 YSA-SCRLILCCNSSS-----KVTEAIRSRC-----LNIRINSPT  190 (365)
Q Consensus       157 ~~~-~~~~Il~t~~~~-----~l~~~l~sR~-----~~i~~~~~~  190 (365)
                      ... ...+|++||-..     .+.+.+.||.     ..+.|...+
T Consensus       192 R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s  236 (248)
T PRK12377        192 RTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES  236 (248)
T ss_pred             HHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence            654 467888888553     2445566664     347776654

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.13  E-value=8.6e-11  Score=99.77  Aligned_cols=151  Identities=19%  Similarity=0.262  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+...+..|..  +.+.|++||||||+++++++ +..+..|.+.+++...  .+......       ....+.++.+
T Consensus        22 ~l~~VS~~i~~Ge~--lgivGeSGsGKSTL~r~l~G-l~~p~~G~I~~~G~~~--~~~~~~~~-------~~~~VQmVFQ   89 (252)
T COG1124          22 ALNNVSLEIERGET--LGIVGESGSGKSTLARLLAG-LEKPSSGSILLDGKPL--APKKRAKA-------FYRPVQMVFQ   89 (252)
T ss_pred             hhcceeEEecCCCE--EEEEcCCCCCHHHHHHHHhc-ccCCCCceEEECCccc--Cccccchh-------hccceeEEec
Confidence            55555556666766  99999999999999999999 7889999999998644  11100000       0001111111


Q ss_pred             Cc--CccchhH--------------------HHHHHHHH------HhcCCCCCCC------------CCCceEEEEeCC-
Q 017844          101 DA--GFQDRYV--------------------VQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (365)
Q Consensus       101 ~~--~~~~~~~--------------------~~~~l~~~------~~~~~~~~~~------------~~~~~vliiDE~-  139 (365)
                      +.  ......+                    +.+.++.+      ....|..+|+            ..+++++|+||+ 
T Consensus        90 Dp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt  169 (252)
T COG1124          90 DPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT  169 (252)
T ss_pred             CCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence            11  0111111                    22222221      1112222232            247899999998 


Q ss_pred             CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeE
Q 017844          140 DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       140 ~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ..|+...|..+++++.+..  .+..+++++++.. +...+.+|+.++
T Consensus       170 SaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm  215 (252)
T COG1124         170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVM  215 (252)
T ss_pred             hhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeee
Confidence            8899999999999887754  3467888887654 556777887543

>TIGR00368 Mg chelatase-related protein

Probab=99.12  E-value=5.1e-10  Score=107.75  Aligned_cols=168  Identities=21%  Similarity=0.310  Sum_probs=100.3

Q ss_pred             CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee---ccc
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID---LEL   86 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~---~~~   86 (365)
                      ..|++++||..+++.+...+..+  .|++|.||||+||||+++.+++ +..+..+...+++..+ ....+....   ...
T Consensus       189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~-llp~~~~~~~le~~~i-~s~~g~~~~~~~~~~  264 (499)
T TIGR00368       189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQG-ILPPLTNEEAIETARI-WSLVGKLIDRKQIKQ  264 (499)
T ss_pred             CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhc-ccCCCCCcEEEecccc-ccchhhhcccccccc
Confidence            37899999999999888877555  3499999999999999999998 4455444444443322 000000000   000


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------  157 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------  157 (365)
                      ..+..+.+.....            ..+.......+-.+ ......+++|||++.+++..++.|++.||+.         
T Consensus       265 ~Pf~~p~~s~s~~------------~~~ggg~~~~pG~i-~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~  331 (499)
T TIGR00368       265 RPFRSPHHSASKP------------ALVGGGPIPLPGEI-SLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASA  331 (499)
T ss_pred             CCccccccccchh------------hhhCCccccchhhh-hccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCc
Confidence            0000000000000            00000000000000 1223479999999999999999999999863         


Q ss_pred             ----cCceeEEEEecCCC-----------------------cccHHHhccce-eEEecCCCHHHH
Q 017844          158 ----SASCRLILCCNSSS-----------------------KVTEAIRSRCL-NIRINSPTEEQI  194 (365)
Q Consensus       158 ----~~~~~~Il~t~~~~-----------------------~l~~~l~sR~~-~i~~~~~~~~~~  194 (365)
                          +.++.+|.++|...                       ++..++++|+. .+.+++++.+++
T Consensus       332 ~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l  396 (499)
T TIGR00368       332 KIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL  396 (499)
T ss_pred             ceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence                24567888877421                       47778899985 788888877654

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.12  E-value=5.3e-11  Score=108.59  Aligned_cols=149  Identities=20%  Similarity=0.265  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCC
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (365)
                      .+++.+.-.+..|..  +.|.||+|+||||+++++++ +..++.|.+.+++.+....+.           .....+.+.+
T Consensus        21 ~~l~~vsl~i~~Gei--~gllGpNGaGKSTLl~~l~G-l~~p~~G~v~i~G~~~~~~~~-----------~~~~~ig~v~   86 (306)
T PRK13537         21 LVVDGLSFHVQRGEC--FGLLGPNGAGKTTTLRMLLG-LTHPDAGSISLCGEPVPSRAR-----------HARQRVGVVP   86 (306)
T ss_pred             EEEecceEEEeCCcE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEecccchH-----------HHHhcEEEEe
Confidence            345555555556655  89999999999999999998 667888888887754311000           0011122222


Q ss_pred             CCcCccchhHHHHHHHH------------------HHhcCCC---------CCC------------CCCCceEEEEeCC-
Q 017844          100 SDAGFQDRYVVQEVIKE------------------MAKNRPI---------DTK------------GKRGFKVLVLNEV-  139 (365)
Q Consensus       100 ~~~~~~~~~~~~~~l~~------------------~~~~~~~---------~~~------------~~~~~~vliiDE~-  139 (365)
                      ++...+...++.+.+..                  +.....+         .+|            ...+++++++||+ 
T Consensus        87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt  166 (306)
T PRK13537         87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT  166 (306)
T ss_pred             ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            22222211122222211                  1110000         111            1347899999998 


Q ss_pred             CCCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCcccHHHhcccee
Q 017844          140 DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       140 ~~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ..|++.++..+.+.+.+.... ..+|++|++.+ ..+.+.+|+..
T Consensus       167 ~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~i  210 (306)
T PRK13537        167 TGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCV  210 (306)
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence            889999999999999887543 45555555544 44566677643

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.12  E-value=4.9e-11  Score=100.90  Aligned_cols=149  Identities=16%  Similarity=0.248  Sum_probs=109.8

Q ss_pred             ccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccce
Q 017844           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (365)
Q Consensus        16 ig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (365)
                      .|...+++.+...+..|++  +.|.||+|+||||+.|.|.+ +..++.+.+.+++.+..              ....+.+
T Consensus        12 Fg~k~av~~isf~v~~G~i--~GllG~NGAGKTTtfRmILg-lle~~~G~I~~~g~~~~--------------~~~~~rI   74 (300)
T COG4152          12 FGDKKAVDNISFEVPPGEI--FGLLGPNGAGKTTTFRMILG-LLEPTEGEITWNGGPLS--------------QEIKNRI   74 (300)
T ss_pred             cCceeeecceeeeecCCeE--EEeecCCCCCccchHHHHhc-cCCccCceEEEcCcchh--------------hhhhhhc
Confidence            4556677777777777777  89999999999999999999 67888888888875541              1123347


Q ss_pred             ecCCCCcCccchhHHHHHHHHHHhcCCC---------------------------CCC------------CCCCceEEEE
Q 017844           96 ELSPSDAGFQDRYVVQEVIKEMAKNRPI---------------------------DTK------------GKRGFKVLVL  136 (365)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------~~~------------~~~~~~vlii  136 (365)
                      .+.|.+.+.+.+.++.+.+..++....+                           .+|            .-.+|.++|+
T Consensus        75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL  154 (300)
T COG4152          75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL  154 (300)
T ss_pred             ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence            8889999988888888888777765543                           111            1247899999


Q ss_pred             eCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccc
Q 017844          137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (365)
Q Consensus       137 DE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~  181 (365)
                      ||+ ..|++-..+.|.+.+-+.......|+.++|...-.+.+.++.
T Consensus       155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~l  200 (300)
T COG4152         155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRL  200 (300)
T ss_pred             cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhh
Confidence            997 889999888888888877666656666665554445565554

>smart00763 AAA_PrkA PrkA AAA domain

Probab=99.12  E-value=5.8e-09  Score=95.18  Aligned_cols=92  Identities=15%  Similarity=0.113  Sum_probs=65.7

Q ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------CceeEEEEecCCC-------cccHHHhccceeEEecCC-
Q 017844          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCLNIRINSP-  189 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~~~~~Il~t~~~~-------~l~~~l~sR~~~i~~~~~-  189 (365)
                      .++.|+-++|+.+.+.+.++.|+..+++..           .+..||+++|..+       +..+++++||..+.++.+ 
T Consensus       235 aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l  314 (361)
T smart00763      235 ANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCL  314 (361)
T ss_pred             ccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcC
Confidence            456799999999999999999999998631           1123455555442       567999999998888655 


Q ss_pred             CHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHH
Q 017844          190 TEEQIVKVLEFIAKKE---GLQLPSGFATRLAEK  220 (365)
Q Consensus       190 ~~~~~~~iL~~~~~~~---~~~i~~~~~~~i~~~  220 (365)
                      +.++-.++.++.+...   +..+.|.+++.++..
T Consensus       315 ~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~  348 (361)
T smart00763      315 RVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF  348 (361)
T ss_pred             CHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence            5566667777666543   456777777766654

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.3e-09  Score=108.38  Aligned_cols=191  Identities=19%  Similarity=0.225  Sum_probs=128.0

Q ss_pred             CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      .+|+++-|-+.++..+++++..           + ..|. ++|+||||+|||..|+++|...-... ..+.+..      
T Consensus       262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-~kisffm------  334 (1080)
T KOG0732|consen  262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-RKISFFM------  334 (1080)
T ss_pred             cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-cccchhh------
Confidence            4799999999999999988731           1 1233 99999999999999999998542111 1111100      


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------H
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E  145 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----------~  145 (365)
                                  -...+...    ..........+.++++...         ..+.|++.||+|.|.+           .
T Consensus       335 ------------rkgaD~ls----kwvgEaERqlrllFeeA~k---------~qPSIIffdeIdGlapvrSskqEqih~S  389 (1080)
T KOG0732|consen  335 ------------RKGADCLS----KWVGEAERQLRLLFEEAQK---------TQPSIIFFDEIDGLAPVRSSKQEQIHAS  389 (1080)
T ss_pred             ------------hcCchhhc----cccCcHHHHHHHHHHHHhc---------cCceEEeccccccccccccchHHHhhhh
Confidence                        00000010    0111111234444444332         3458999999998743           1


Q ss_pred             HHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017844          146 AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK  220 (365)
Q Consensus       146 ~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~  220 (365)
                      ....|+-+|...+  +.+.+|.+||.++.++++++++.   ..++|+-|+.+...+++.-.-.+-.-.++......+++.
T Consensus       390 IvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~  469 (1080)
T KOG0732|consen  390 IVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEE  469 (1080)
T ss_pred             HHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHh
Confidence            2346777777654  34677778999999999998875   379999999999999998766665567889999999998


Q ss_pred             cCCCHHHHHHHH
Q 017844          221 SNRSLRRAILSF  232 (365)
Q Consensus       221 ~~g~lr~ai~~l  232 (365)
                      +.|-.+.-+..|
T Consensus       470 t~gy~gaDlkaL  481 (1080)
T KOG0732|consen  470 TSGYGGADLKAL  481 (1080)
T ss_pred             ccccchHHHHHH
Confidence            887766654443

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.10  E-value=2e-10  Score=97.89  Aligned_cols=148  Identities=18%  Similarity=0.184  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc--CCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++.+++ +.  .+..+.+.+++.... .            ......+.+.
T Consensus        24 ~l~~~~~~i~~Ge~--~~l~G~nGsGKStLl~~i~G-l~~~~~~~G~i~~~g~~~~-~------------~~~~~~i~~~   87 (194)
T cd03213          24 LLKNVSGKAKPGEL--TAIMGPSGAGKSTLLNALAG-RRTGLGVSGEVLINGRPLD-K------------RSFRKIIGYV   87 (194)
T ss_pred             ceecceEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCCceEEEECCEeCc-h------------HhhhheEEEc
Confidence            44455444555554  99999999999999999998 55  777788877775430 0            0001113333


Q ss_pred             CCCcCccchhHHHHHHHHHHhcCCC----------CCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEE
Q 017844           99 PSDAGFQDRYVVQEVIKEMAKNRPI----------DTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILC  166 (365)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~  166 (365)
                      +++.......++.+.+........+          ......+++++++||+ ..|+......+.+.|.+... ...+|++
T Consensus        88 ~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~  167 (194)
T cd03213          88 PQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS  167 (194)
T ss_pred             cCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            3332222222333433221111011          0011346789999998 78999999999999987643 4567777


Q ss_pred             ecCCCcccHHHhccceeE
Q 017844          167 CNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       167 t~~~~~l~~~l~sR~~~i  184 (365)
                      +++.......+.+|+.++
T Consensus       168 sh~~~~~~~~~~d~v~~l  185 (194)
T cd03213         168 IHQPSSEIFELFDKLLLL  185 (194)
T ss_pred             ecCchHHHHHhcCEEEEE
Confidence            777653334455555443

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.5e-09  Score=102.36  Aligned_cols=176  Identities=19%  Similarity=0.274  Sum_probs=118.0

Q ss_pred             CccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844           13 DQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      .++.|-......++..+..           | +.|. +++|||||+|||.+++++|++..+   ..+.+++         
T Consensus       184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a---~~~~i~~---------  251 (693)
T KOG0730|consen  184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA---FLFLING---------  251 (693)
T ss_pred             cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc---eeEeccc---------
Confidence            4556666666666665531           2 2233 999999999999999999997521   1111111         


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----------HHHHH
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------EAQHS  149 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----------~~~~~  149 (365)
                                  +..+.-.+    .......+..+.......        .+.+++|||++.+.+          .....
T Consensus       252 ------------peli~k~~----gEte~~LR~~f~~a~k~~--------~psii~IdEld~l~p~r~~~~~~e~Rv~sq  307 (693)
T KOG0730|consen  252 ------------PELISKFP----GETESNLRKAFAEALKFQ--------VPSIIFIDELDALCPKREGADDVESRVVSQ  307 (693)
T ss_pred             ------------HHHHHhcc----cchHHHHHHHHHHHhccC--------CCeeEeHHhHhhhCCcccccchHHHHHHHH
Confidence                        11111111    111222444444433222        168999999998864          23456


Q ss_pred             HHHHHhhhc--CceeEEEEecCCCcccHHHhc-cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q 017844          150 LRRTMEKYS--ASCRLILCCNSSSKVTEAIRS-RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSL  225 (365)
Q Consensus       150 Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s-R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~l  225 (365)
                      |+.+++...  .++.++.+++.+..+++++++ |+. .+.+.-|+..+..++++...++.+.. ++..+..++..+.|-.
T Consensus       308 lltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyv  386 (693)
T KOG0730|consen  308 LLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYV  386 (693)
T ss_pred             HHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchh
Confidence            788887765  567777788899999999997 774 79999999999999999998887766 6788888888877755

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.9e-09  Score=102.40  Aligned_cols=172  Identities=19%  Similarity=0.195  Sum_probs=110.1

Q ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceec-CCCCcCccchhHHH
Q 017844           33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL-SPSDAGFQDRYVVQ  111 (365)
Q Consensus        33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  111 (365)
                      +.++++|+||+|+|||.|+++++.++..+...                             |+++ .++......-..++
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~-----------------------------hv~~v~Cs~l~~~~~e~iQ  480 (952)
T KOG0735|consen  430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIA-----------------------------HVEIVSCSTLDGSSLEKIQ  480 (952)
T ss_pred             ccccEEEeCCCCCCHhHHHHHHHHHhccccce-----------------------------EEEEEechhccchhHHHHH
Confidence            33459999999999999999999987533221                             1221 12222222222344


Q ss_pred             HHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----------HHHHH----HHHHHhhh---cCceeEEEEecCCCccc
Q 017844          112 EVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------EAQHS----LRRTMEKY---SASCRLILCCNSSSKVT  174 (365)
Q Consensus       112 ~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----------~~~~~----Ll~~le~~---~~~~~~Il~t~~~~~l~  174 (365)
                      ..+..+.....     ...+.|+++|++|.+..          ...+.    |.+.+..+   ...+.||.+.+....+.
T Consensus       481 k~l~~vfse~~-----~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~  555 (952)
T KOG0735|consen  481 KFLNNVFSEAL-----WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN  555 (952)
T ss_pred             HHHHHHHHHHH-----hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence            44443332211     23568999999998732          11122    22333333   23345677777777788


Q ss_pred             HHHhcc--ce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Q 017844          175 EAIRSR--CL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR-SLRRAILSFETCRVQ  238 (365)
Q Consensus       175 ~~l~sR--~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g-~lr~ai~~l~~~~~~  238 (365)
                      +.+.|-  ++ ++.+++|...++.++|+.++++.......+.++.++..++| ++++..-..+++...
T Consensus       556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~  623 (952)
T KOG0735|consen  556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHE  623 (952)
T ss_pred             hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHH
Confidence            877664  33 78999999999999999999988777778889999999988 455555555554433

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.10  E-value=2.5e-10  Score=94.74  Aligned_cols=104  Identities=26%  Similarity=0.417  Sum_probs=64.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhc-CCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI  114 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  114 (365)
                      +++|.||+|+|||.+++++++.+. +.....+.+++..+                +.....         ..  .+...+
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~----------------~~~~~~---------~~--~~~~l~   57 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY----------------SEGDDV---------ES--SVSKLL   57 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH----------------CSHHHC---------SC--HCHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc----------------cccchH---------Hh--hhhhhh
Confidence            489999999999999999999887 55555555555443                000000         00  000111


Q ss_pred             HHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhhh-----------cCceeEEEEecCCC
Q 017844          115 KEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------EAQHSLRRTMEKY-----------SASCRLILCCNSSS  171 (365)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----------~~~~~Ll~~le~~-----------~~~~~~Il~t~~~~  171 (365)
                      ..    .+. ........||++||+|+..+           ..++.|++.||+-           -.++.||+++|-..
T Consensus        58 ~~----~~~-~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~  131 (171)
T PF07724_consen   58 GS----PPG-YVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA  131 (171)
T ss_dssp             HH----TTC-HHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred             hc----ccc-eeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence            10    000 00011224999999999999           9999999999863           13566777777554

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>smart00350 MCM minichromosome maintenance proteins

Probab=99.09  E-value=3.9e-09  Score=102.85  Aligned_cols=158  Identities=19%  Similarity=0.286  Sum_probs=94.5

Q ss_pred             ccccCHHHHHHHHHHHHcCCC------------CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844           14 QVIVHQDIAQNLKKLVTEQDC------------PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~~~~------------~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .++|++.++..+.-.+-+|..            .|+||+|+||+|||++++.+++.. ...   .+..+..    +    
T Consensus       204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~-~r~---~~~~~~~----~----  271 (509)
T smart00350      204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTA-PRA---VYTTGKG----S----  271 (509)
T ss_pred             cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHc-Ccc---eEcCCCC----C----
Confidence            467888887777666655421            169999999999999999999843 111   1111100    0    


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---  158 (365)
                       +.          ..+.....  .+... .+.   ......+   ......+++|||++.+++..+..|+..|++..   
T Consensus       272 -~~----------~~l~~~~~--~~~~~-g~~---~~~~G~l---~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i  331 (509)
T smart00350      272 -SA----------VGLTAAVT--RDPET-REF---TLEGGAL---VLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISI  331 (509)
T ss_pred             -Cc----------CCccccce--EccCc-ceE---EecCccE---EecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEE
Confidence             00          00000000  00000 000   0000001   12234699999999999999999999998632   


Q ss_pred             ----------CceeEEEEecCCC-------------cccHHHhccce--eEEecCCCHHHHHHHHHHHHH
Q 017844          159 ----------ASCRLILCCNSSS-------------KVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAK  203 (365)
Q Consensus       159 ----------~~~~~Il~t~~~~-------------~l~~~l~sR~~--~i~~~~~~~~~~~~iL~~~~~  203 (365)
                                ..+.+|.++|...             .+++++.|||.  .+-...++.+.-.+++++++.
T Consensus       332 ~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~  401 (509)
T smart00350      332 AKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD  401 (509)
T ss_pred             EeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence                      3455666666432             58899999993  455678888887777777654

>PRK07952 DNA replication protein DnaC; Validated

Probab=99.09  E-value=6.4e-10  Score=97.28  Aligned_cols=153  Identities=16%  Similarity=0.250  Sum_probs=87.2

Q ss_pred             cccCCCCCCcccc----CHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844            5 DKYRPKTLDQVIV----HQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus         5 ~k~rP~~~~~iig----~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      +.|++.+|+++..    +..++..+..+++.-  ...+++|+|++|+|||+++.+++.++.......+.+....+     
T Consensus        64 ~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l-----  138 (244)
T PRK07952         64 PLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI-----  138 (244)
T ss_pred             ccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH-----
Confidence            5678889999863    344666666666532  22359999999999999999999987543322221111111     


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC--CHHHHHHHHHHHhh
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEK  156 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L--~~~~~~~Ll~~le~  156 (365)
                                      +........ .......+.++.+           ...++|||||++..  +......|..+++.
T Consensus       139 ----------------~~~l~~~~~-~~~~~~~~~l~~l-----------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~  190 (244)
T PRK07952        139 ----------------MSAMKDTFS-NSETSEEQLLNDL-----------SNVDLLVIDEIGVQTESRYEKVIINQIVDR  190 (244)
T ss_pred             ----------------HHHHHHHHh-hccccHHHHHHHh-----------ccCCEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence                            000000000 0000111222222           24589999999655  33445567778876


Q ss_pred             hc-CceeEEEEecCCCc-----ccHHHhccc-----eeEEecCCC
Q 017844          157 YS-ASCRLILCCNSSSK-----VTEAIRSRC-----LNIRINSPT  190 (365)
Q Consensus       157 ~~-~~~~~Il~t~~~~~-----l~~~l~sR~-----~~i~~~~~~  190 (365)
                      .. ....+|++||-...     +.+.+.||+     ..+.|...+
T Consensus       191 Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s  235 (244)
T PRK07952        191 RSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS  235 (244)
T ss_pred             HHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence            43 35678888886542     445566665     367776544

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.09  E-value=2.6e-09  Score=88.39  Aligned_cols=145  Identities=17%  Similarity=0.170  Sum_probs=76.5

Q ss_pred             cccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc
Q 017844           15 VIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA   92 (365)
Q Consensus        15 iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (365)
                      ++|.....+.+.+.++.  ....+++|+|++||||+.+|++|...-.......+.++|..+.  +         . ....
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~--~---------~-~~e~   68 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP--E---------E-LLES   68 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS---H---------H-HHHH
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh--c---------c-hhhh
Confidence            46776666666666543  2223499999999999999999987433333344555553320  0         0 0000


Q ss_pred             cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-----------cCce
Q 017844           93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----------SASC  161 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-----------~~~~  161 (365)
                      ..+............. -...+.            ......++|||++.|++..|..|+++|++.           +.++
T Consensus        69 ~LFG~~~~~~~~~~~~-~~G~l~------------~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~  135 (168)
T PF00158_consen   69 ELFGHEKGAFTGARSD-KKGLLE------------QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDV  135 (168)
T ss_dssp             HHHEBCSSSSTTTSSE-BEHHHH------------HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred             hhhccccccccccccc-cCCcee------------eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccc
Confidence            0011111000000000 001111            123368999999999999999999999853           2367


Q ss_pred             eEEEEecCCC-------cccHHHhccceeE
Q 017844          162 RLILCCNSSS-------KVTEAIRSRCLNI  184 (365)
Q Consensus       162 ~~Il~t~~~~-------~l~~~l~sR~~~i  184 (365)
                      ++|++|+...       .+.+.+..|...+
T Consensus       136 RiI~st~~~l~~~v~~g~fr~dLy~rL~~~  165 (168)
T PF00158_consen  136 RIIASTSKDLEELVEQGRFREDLYYRLNVF  165 (168)
T ss_dssp             EEEEEESS-HHHHHHTTSS-HHHHHHHTTE
T ss_pred             eEEeecCcCHHHHHHcCCChHHHHHHhceE
Confidence            8888888653       3445555554433

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=99.08  E-value=2.8e-09  Score=94.40  Aligned_cols=111  Identities=12%  Similarity=0.185  Sum_probs=75.8

Q ss_pred             CceEEEEeCCCCCC---HHHHHHHHHHHhhhcC--ceeEEEEecCCC----cccHHHhccceeEEecCCCHHH-HHHHHH
Q 017844          130 GFKVLVLNEVDKLS---REAQHSLRRTMEKYSA--SCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQ-IVKVLE  199 (365)
Q Consensus       130 ~~~vliiDE~~~L~---~~~~~~Ll~~le~~~~--~~~~Il~t~~~~----~l~~~l~sR~~~i~~~~~~~~~-~~~iL~  199 (365)
                      +.+++||||+|.+-   ...|..++..|.....  .+.+|++.+...    .-++.+.+|+..+.+++...++ ....|.
T Consensus       145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~  224 (302)
T PF05621_consen  145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLA  224 (302)
T ss_pred             CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHH
Confidence            45899999998862   3345566666655432  456777765433    4568999999999988776554 444444


Q ss_pred             HHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          200 FIAKKEGL-----QLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       200 ~~~~~~~~-----~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      ..-.....     --+++....|...++|.+++..+++..++..+-
T Consensus       225 s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI  270 (302)
T PF05621_consen  225 SFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAI  270 (302)
T ss_pred             HHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            33322111     135677899999999999999999998776653

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK08116 hypothetical protein; Validated

Probab=99.08  E-value=8.8e-10  Score=98.33  Aligned_cols=154  Identities=17%  Similarity=0.269  Sum_probs=88.3

Q ss_pred             ccCCCCCCcccc---CHHHHHHHHHHHHc----CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844            6 KYRPKTLDQVIV---HQDIAQNLKKLVTE----QD-CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus         6 k~rP~~~~~iig---~~~~~~~l~~~l~~----~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      +|+-.+|+.+..   +..+....+.+++.    .. ...++|+|++|+|||+|+.++++++.......++++...+    
T Consensus        78 ~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l----  153 (268)
T PRK08116         78 KFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL----  153 (268)
T ss_pred             HHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH----
Confidence            455567887753   33344444444432    11 1239999999999999999999988644322222111110    


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC--CCCCHHHHHHHHHHHh
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV--DKLSREAQHSLRRTME  155 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~--~~L~~~~~~~Ll~~le  155 (365)
                                       +................++++.+           ...++|||||+  +..+...+..|+.+++
T Consensus       154 -----------------l~~i~~~~~~~~~~~~~~~~~~l-----------~~~dlLviDDlg~e~~t~~~~~~l~~iin  205 (268)
T PRK08116        154 -----------------LNRIKSTYKSSGKEDENEIIRSL-----------VNADLLILDDLGAERDTEWAREKVYNIID  205 (268)
T ss_pred             -----------------HHHHHHHHhccccccHHHHHHHh-----------cCCCEEEEecccCCCCCHHHHHHHHHHHH
Confidence                             00000000000000111222222           23479999999  5567778888999998


Q ss_pred             hh-cCceeEEEEecCCCc-----ccHHHhcc----ceeEEecCCCH
Q 017844          156 KY-SASCRLILCCNSSSK-----VTEAIRSR----CLNIRINSPTE  191 (365)
Q Consensus       156 ~~-~~~~~~Il~t~~~~~-----l~~~l~sR----~~~i~~~~~~~  191 (365)
                      .. .....+|++||....     +...+.||    |..+.|..++.
T Consensus       206 ~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~  251 (268)
T PRK08116        206 SRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY  251 (268)
T ss_pred             HHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence            64 344668888886642     45677788    56788887764

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.07  E-value=5.8e-10  Score=93.25  Aligned_cols=138  Identities=20%  Similarity=0.335  Sum_probs=80.7

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (365)
                      .+..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++......+  .  .       ....+.+.+++......
T Consensus        22 ~i~~Ge~--~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~~--~--~-------~~~~i~~~~q~~~~~~~   87 (173)
T cd03230          22 TVEKGEI--YGLLGPNGAGKTTLIKIILG-LLKPDSGEIKVLGKDIKKEP--E--E-------VKRRIGYLPEEPSLYEN   87 (173)
T ss_pred             EEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcccch--H--h-------hhccEEEEecCCccccC
Confidence            3444444  89999999999999999999 55677787777765431000  0  0       01123333333222222


Q ss_pred             hHHHHHHH-------HHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCcccHHHh
Q 017844          108 YVVQEVIK-------EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIR  178 (365)
Q Consensus       108 ~~~~~~l~-------~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~~~l~  178 (365)
                      .++.+.+.       .++-..    ....+++++++||+ ..|+......+.+.+++.... ..+|+++++.. ....+.
T Consensus        88 ~tv~~~~~LS~G~~qrv~lar----al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~  162 (173)
T cd03230          88 LTVRENLKLSGGMKQRLALAQ----ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLC  162 (173)
T ss_pred             CcHHHHhhcCHHHHHHHHHHH----HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhC
Confidence            12323221       111111    11346799999998 789999999999999886543 55666666644 334444


Q ss_pred             ccceeE
Q 017844          179 SRCLNI  184 (365)
Q Consensus       179 sR~~~i  184 (365)
                      +|+..+
T Consensus       163 d~i~~l  168 (173)
T cd03230         163 DRVAIL  168 (173)
T ss_pred             CEEEEE
Confidence            554443

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.07  E-value=3.2e-09  Score=105.06  Aligned_cols=106  Identities=18%  Similarity=0.202  Sum_probs=72.2

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhh---------------------cCceeEEEEecCC--CcccHHHhccce----
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKY---------------------SASCRLILCCNSS--SKVTEAIRSRCL----  182 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~---------------------~~~~~~Il~t~~~--~~l~~~l~sR~~----  182 (365)
                      +..+++|||++.|++..|..|++.|++.                     +.++++|++++..  ..+.+++++|+.    
T Consensus       217 ngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v  296 (608)
T TIGR00764       217 HKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGY  296 (608)
T ss_pred             CCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeE
Confidence            3469999999999999999999999642                     1245677777754  468899999986    


Q ss_pred             eEEec---CCCHHHHH---HHHHHHHHHcC--CCCCHHHHHHHHHHc----------CCCHHHHHHHHHHH
Q 017844          183 NIRIN---SPTEEQIV---KVLEFIAKKEG--LQLPSGFATRLAEKS----------NRSLRRAILSFETC  235 (365)
Q Consensus       183 ~i~~~---~~~~~~~~---~iL~~~~~~~~--~~i~~~~~~~i~~~~----------~g~lr~ai~~l~~~  235 (365)
                      .+.|+   +.+.+...   .++.+.+++.|  -.+++++++.+.+.+          ..+.|+.-+++..+
T Consensus       297 ~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A  367 (608)
T TIGR00764       297 EVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA  367 (608)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence            23443   23444443   44444455553  268899999998632          23467777777665

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.06  E-value=6.4e-10  Score=96.12  Aligned_cols=54  Identities=19%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|+++++.+ ....+.+|+..
T Consensus       145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~  200 (210)
T cd03269         145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLL  200 (210)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEE
Confidence            47799999998 78999999999999987643 455666666544 33344455543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=99.06  E-value=9.8e-09  Score=99.62  Aligned_cols=204  Identities=17%  Similarity=0.167  Sum_probs=121.5

Q ss_pred             CCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844           12 LDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (365)
Q Consensus        12 ~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (365)
                      ...++|.......+...+..  +...++++.|++|+||+++++++...-.......+.++|..+   +.    +.    +
T Consensus       133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~---~~----~~----~  201 (463)
T TIGR01818       133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAI---PK----DL----I  201 (463)
T ss_pred             ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCC---CH----HH----H
Confidence            34577766555555444432  222349999999999999999998743222222233333211   00    00    0


Q ss_pred             ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------
Q 017844           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------  158 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------  158 (365)
                       ....+..   ..+.+..          +.....+.........++|||++.|+...|..|++.+++..           
T Consensus       202 -~~~lfg~---~~~~~~~----------~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~  267 (463)
T TIGR01818       202 -ESELFGH---EKGAFTG----------ANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIK  267 (463)
T ss_pred             -HHHhcCC---CCCCCCC----------cccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceee
Confidence             0000000   0000000          00000000011223579999999999999999999998632           


Q ss_pred             CceeEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHH-
Q 017844          159 ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIAK----KEG---LQLPSGFATRLAE-  219 (365)
Q Consensus       159 ~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~~~----~~~---~~i~~~~~~~i~~-  219 (365)
                      .++++|++++...       .+.+.+..|+.  .|+++|+.  .+++..++..++.    ..+   ..++++++..+.+ 
T Consensus       268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~  347 (463)
T TIGR01818       268 VDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL  347 (463)
T ss_pred             eeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence            2457777776543       35557777764  67777776  6677766655443    233   3689999999998 


Q ss_pred             HcCCCHHHHHHHHHHHHhcCC
Q 017844          220 KSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       220 ~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      .+.||+|+..+.++.++..+.
T Consensus       348 ~wpgNvreL~~~~~~~~~~~~  368 (463)
T TIGR01818       348 RWPGNVRQLENLCRWLTVMAS  368 (463)
T ss_pred             CCCChHHHHHHHHHHHHHhCC
Confidence            469999999999999877643

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.06  E-value=1.6e-10  Score=105.39  Aligned_cols=147  Identities=16%  Similarity=0.219  Sum_probs=82.9

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (365)
                      ++.+.-.+..|..  +.|.||+|+||||+++++++ +..++.|.+.+++......+.    ..       ...+.+.+++
T Consensus         9 l~~vs~~i~~Ge~--~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~----~~-------~~~i~~~~q~   74 (302)
T TIGR01188         9 VDGVNFKVREGEV--FGFLGPNGAGKTTTIRMLTT-LLRPTSGTARVAGYDVVREPR----KV-------RRSIGIVPQY   74 (302)
T ss_pred             EeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccCHH----HH-------HhhcEEecCC
Confidence            3334334445554  89999999999999999999 567888888887754311000    00       0011122221


Q ss_pred             cCccchhH----------------------HHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CC
Q 017844          102 AGFQDRYV----------------------VQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DK  141 (365)
Q Consensus       102 ~~~~~~~~----------------------~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~  141 (365)
                      .......+                      +.+.++.+.-     .....+|            ...+++++++||+ ..
T Consensus        75 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g  154 (302)
T TIGR01188        75 ASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG  154 (302)
T ss_pred             CCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence            11111111                      1122222110     0000111            1247899999998 88


Q ss_pred             CCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          142 LSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       142 L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      |++.....+.+.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus       155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~  196 (302)
T TIGR01188       155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAI  196 (302)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence            999999999999988753 345666666544 34455666643

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.06  E-value=1.1e-10  Score=107.78  Aligned_cols=149  Identities=20%  Similarity=0.285  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+...+..|..  +.|.||+|+||||+++++++ +..++.|.+.+++......+.    .       ....+.+.++
T Consensus        56 ~l~~is~~i~~Gei--~gLlGpNGaGKSTLl~~L~G-l~~p~~G~i~i~G~~~~~~~~----~-------~~~~ig~v~q  121 (340)
T PRK13536         56 VVNGLSFTVASGEC--FGLLGPNGAGKSTIARMILG-MTSPDAGKITVLGVPVPARAR----L-------ARARIGVVPQ  121 (340)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCceEEEECCEECCcchH----H-------HhccEEEEeC
Confidence            33333334444544  89999999999999999999 667888888888754310000    0       0001111111


Q ss_pred             CcCccchhHHHHH------------------HHHHHhcCCC---------CCC------------CCCCceEEEEeCC-C
Q 017844          101 DAGFQDRYVVQEV------------------IKEMAKNRPI---------DTK------------GKRGFKVLVLNEV-D  140 (365)
Q Consensus       101 ~~~~~~~~~~~~~------------------l~~~~~~~~~---------~~~------------~~~~~~vliiDE~-~  140 (365)
                      +.......++.+.                  ...+.....+         .+|            ...+++++|+||+ .
T Consensus       122 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~  201 (340)
T PRK13536        122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT  201 (340)
T ss_pred             CccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            1111111111111                  1111111111         111            1247899999998 8


Q ss_pred             CCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCcccHHHhccceeE
Q 017844          141 KLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       141 ~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .|++..+..+.+.+.+.... ..+|++|++. ...+.+.+|+..+
T Consensus       202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il  245 (340)
T PRK13536        202 GLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVL  245 (340)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEE
Confidence            89999999999999886443 4455555544 4445667776543

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=99.05  E-value=1.2e-08  Score=98.76  Aligned_cols=203  Identities=13%  Similarity=0.123  Sum_probs=115.1

Q ss_pred             CCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844           12 LDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (365)
Q Consensus        12 ~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (365)
                      +..++|.......+...+..  ....+++++|++|+||+++|+.+...........+.++|..+ . +  ...+      
T Consensus       142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~-~-~--~~~~------  211 (457)
T PRK11361        142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAAL-P-E--SLLE------  211 (457)
T ss_pred             ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCC-C-H--HHHH------
Confidence            44567765555555444432  222349999999999999999997643222222233333221 0 0  0000      


Q ss_pred             ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------
Q 017844           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------  158 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------  158 (365)
                        ...+..........             .....+........+++|||++.|+...|..|++.+++..           
T Consensus       212 --~~lfg~~~~~~~~~-------------~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~  276 (457)
T PRK11361        212 --SELFGHEKGAFTGA-------------QTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIK  276 (457)
T ss_pred             --HHhcCCCCCCCCCC-------------CCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceee
Confidence              00000000000000             0000000011234689999999999999999999997631           


Q ss_pred             CceeEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHH----HHHcC---CCCCHHHHHHHHH-
Q 017844          159 ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFI----AKKEG---LQLPSGFATRLAE-  219 (365)
Q Consensus       159 ~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~----~~~~~---~~i~~~~~~~i~~-  219 (365)
                      .++++|++++...       .+.+.+..|+.  .+.++|+.  .+++..+....    ..+.+   ..+++++++.+.. 
T Consensus       277 ~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~  356 (457)
T PRK11361        277 VDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW  356 (457)
T ss_pred             eceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC
Confidence            2467888887542       34556666664  45555554  23444333333    32223   3689999999998 


Q ss_pred             HcCCCHHHHHHHHHHHHhcC
Q 017844          220 KSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       220 ~~~g~lr~ai~~l~~~~~~~  239 (365)
                      .+.||+|++.+.++.++..+
T Consensus       357 ~wpgNv~eL~~~~~~~~~~~  376 (457)
T PRK11361        357 SWPGNIRELSNVIERAVVMN  376 (457)
T ss_pred             CCCCcHHHHHHHHHHHHHhC
Confidence            46999999999999887654

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.05  E-value=2.7e-10  Score=91.71  Aligned_cols=52  Identities=25%  Similarity=0.350  Sum_probs=40.5

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhc-------------C------ceeEEEEecCCC----cccHHHhccc
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------A------SCRLILCCNSSS----KVTEAIRSRC  181 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~-------------~------~~~~Il~t~~~~----~l~~~l~sR~  181 (365)
                      +..+++|||++..+++.++.|+.++++..             .      +.++|+++|...    .+.+++++||
T Consensus        65 ~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf  139 (139)
T PF07728_consen   65 KGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF  139 (139)
T ss_dssp             EEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred             ceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence            45899999999999999999999997421             1      278888888887    7999999996

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.05  E-value=6.3e-10  Score=96.73  Aligned_cols=159  Identities=18%  Similarity=0.298  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-------Ccceeccccc-----
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-------SRNIDLELTT-----   88 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~-----   88 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+...+.       .....+....     
T Consensus        19 il~~~s~~i~~G~~--~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   95 (218)
T cd03255          19 ALKGVSLSIEKGEF--VAIVGPSGSGKSTLLNILGG-LDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP   95 (218)
T ss_pred             EEeeeEEEEcCCCE--EEEEcCCCCCHHHHHHHHhC-CcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence            34444444445554  99999999999999999999 557777888777754411010       0000000000     


Q ss_pred             -cccccceecCCCCcCccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844           89 -LSSANHVELSPSDAGFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREA  146 (365)
Q Consensus        89 -~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~  146 (365)
                       .+..+.+.+.....+...   ...+.+.++.+.-     ..+..+|            ...+++++++||+ ..|++..
T Consensus        96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~  175 (218)
T cd03255          96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET  175 (218)
T ss_pred             CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence             000000000000000000   0011222222110     0000111            1347899999998 8899999


Q ss_pred             HHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       147 ~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ...+.+.+.+...  +..+|+++++.+.+ . +.+|+.++
T Consensus       176 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~-~~d~v~~l  213 (218)
T cd03255         176 GKEVMELLRELNKEAGTTIVVVTHDPELA-E-YADRIIEL  213 (218)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEECCHHHH-h-hhcEEEEe
Confidence            9999999988643  56777788776543 3 55554433

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK15115 response regulator GlrR; Provisional

Probab=99.04  E-value=1.6e-08  Score=97.62  Aligned_cols=109  Identities=18%  Similarity=0.266  Sum_probs=75.5

Q ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------CceeEEEEecCCC-------cccHHHhccce--eEEecCCC
Q 017844          131 FKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT  190 (365)
Q Consensus       131 ~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~  190 (365)
                      ...++|||++.|+...|..|++.+++..           .++++|++|+...       .+.+.+..|+.  .|.++|+.
T Consensus       229 ~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr  308 (444)
T PRK15115        229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALA  308 (444)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChH
Confidence            3689999999999999999999998632           1457777776532       23345555554  45555553


Q ss_pred             H--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Q 017844          191 E--EQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       191 ~--~~~~~iL~~~~~----~~~---~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~~  239 (365)
                      .  +++..++...+.    ..+   ..+++++++.+.... .||+|++.+.++.++..+
T Consensus       309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~  367 (444)
T PRK15115        309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT  367 (444)
T ss_pred             hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence            2  244444344333    223   258999999999965 999999999999887643

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.04  E-value=6.4e-10  Score=93.80  Aligned_cols=136  Identities=18%  Similarity=0.187  Sum_probs=78.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc---CccchhHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA---GFQDRYVVQEV  113 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  113 (365)
                      +.|.||+|+||||+++++++ +..+..+.+.+++......+..         ......+.+.+++.   ......++.+.
T Consensus        29 ~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~---------~~~~~~i~~~~q~~~~~~~~~~~t~~e~   98 (182)
T cd03215          29 VGIAGLVGNGQTELAEALFG-LRPPASGEITLDGKPVTRRSPR---------DAIRAGIAYVPEDRKREGLVLDLSVAEN   98 (182)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCccCHH---------HHHhCCeEEecCCcccCcccCCCcHHHH
Confidence            89999999999999999999 4567778887777543100000         00011233333321   12222234444


Q ss_pred             HHHHHhc-----C--CCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          114 IKEMAKN-----R--PIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       114 l~~~~~~-----~--~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +......     .  .+......+++++++||+ ..|+......+.+.+.+... ...+|+++++.+ ..+.+.+|+..
T Consensus        99 l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~  176 (182)
T cd03215          99 IALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILV  176 (182)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            3221100     0  000112357799999998 88999999999999987643 456666666644 23344444433

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=99.03  E-value=8e-09  Score=102.08  Aligned_cols=110  Identities=10%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHhhhc-------------CceeEEEEecCCC---cccHHHhccce-eEEec-CCC
Q 017844          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS---KVTEAIRSRCL-NIRIN-SPT  190 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-------------~~~~~Il~t~~~~---~l~~~l~sR~~-~i~~~-~~~  190 (365)
                      .+..++++||++.+++..++.|+..|++..             ..+.+|.++|..+   .+.+++.+|+. .+.+. .++
T Consensus        83 A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~  162 (589)
T TIGR02031        83 APRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS  162 (589)
T ss_pred             CCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC
Confidence            344699999999999999999999998642             3455666555444   58899999985 34443 445


Q ss_pred             HHHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHhc
Q 017844          191 EEQIVKVLEFIAK-----------------------KEGLQLPSGFATRLAEKS---N-RSLRRAILSFETCRVQ  238 (365)
Q Consensus       191 ~~~~~~iL~~~~~-----------------------~~~~~i~~~~~~~i~~~~---~-g~lr~ai~~l~~~~~~  238 (365)
                      .++..+++++...                       ...+.++++.+++|++.+   + .++|..+.++..+.+.
T Consensus       163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~  237 (589)
T TIGR02031       163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAH  237 (589)
T ss_pred             HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence            5555665554321                       135678899888887743   2 3478877777654443

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.03  E-value=1.7e-10  Score=98.28  Aligned_cols=59  Identities=19%  Similarity=0.416  Sum_probs=48.5

Q ss_pred             CCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           12 LDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        12 ~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      .+.-+++..+++.+.-.+..|.+  ++|.||+||||||+.+.|-+ +..++.+.+.+++.+.
T Consensus         7 vsk~y~~~~av~~v~l~I~~gef--~vliGpSGsGKTTtLkMINr-Liept~G~I~i~g~~i   65 (309)
T COG1125           7 VSKRYGNKKAVDDVNLTIEEGEF--LVLIGPSGSGKTTTLKMINR-LIEPTSGEILIDGEDI   65 (309)
T ss_pred             eehhcCCceeeeeeeEEecCCeE--EEEECCCCCcHHHHHHHHhc-ccCCCCceEEECCeec
Confidence            33445667777777777777777  89999999999999999987 8899999999998765

>PRK08181 transposase; Validated

Probab=99.03  E-value=1.4e-09  Score=96.56  Aligned_cols=133  Identities=17%  Similarity=0.257  Sum_probs=75.6

Q ss_pred             HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc
Q 017844           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (365)
Q Consensus        23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (365)
                      ..+..|+..+  .+++|+||+|+|||+++.+++.++.......+++....+                     +.......
T Consensus        97 ~~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L---------------------~~~l~~a~  153 (269)
T PRK08181         97 AAGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL---------------------VQKLQVAR  153 (269)
T ss_pred             HHHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH---------------------HHHHHHHH
Confidence            3444576644  349999999999999999999977543221111111000                     00000000


Q ss_pred             CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC--CHHHHHHHHHHHhhhcCceeEEEEecCCCc--------
Q 017844          103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSSSK--------  172 (365)
Q Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L--~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~--------  172 (365)
                      .   .....+.++.+           .+.+++||||++.+  +...+..|+++++....+..+|++||.+..        
T Consensus       154 ~---~~~~~~~l~~l-----------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D  219 (269)
T PRK08181        154 R---ELQLESAIAKL-----------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPD  219 (269)
T ss_pred             h---CCcHHHHHHHH-----------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCC
Confidence            0   00111222221           24579999999765  455667899999876555678888886642        


Q ss_pred             --ccHHHhcc----ceeEEecCCCHH
Q 017844          173 --VTEAIRSR----CLNIRINSPTEE  192 (365)
Q Consensus       173 --l~~~l~sR----~~~i~~~~~~~~  192 (365)
                        +-.++.+|    |..+.|...+..
T Consensus       220 ~~~a~aildRL~h~~~~i~~~g~s~R  245 (269)
T PRK08181        220 PAMTLAAVDRLVHHATIFEMNVESYR  245 (269)
T ss_pred             ccchhhHHHhhhcCceEEecCCccch
Confidence              22344555    457777765543

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=99.02  E-value=4.8e-09  Score=103.49  Aligned_cols=53  Identities=26%  Similarity=0.447  Sum_probs=47.0

Q ss_pred             cCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q 017844            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus         7 ~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      -+|+.|++++||++++..|..++..++  +++|+||||+||||++++++..+.+.
T Consensus        25 ~~~~~~~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~~~   77 (637)
T PRK13765         25 VPERLIDQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLPKE   77 (637)
T ss_pred             cCcccHHHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcChH
Confidence            468899999999999999999988774  59999999999999999999976543

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.02  E-value=4.8e-10  Score=98.43  Aligned_cols=159  Identities=14%  Similarity=0.205  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-C---cceeccccc------cc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-S---RNIDLELTT------LS   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~---~~~~~~~~~------~~   90 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+. .   ....+....      .+
T Consensus        15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   91 (232)
T cd03218          15 VVNGVSLSVKQGEI--VGLLGPNGAGKTTTFYMIVG-LVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT   91 (232)
T ss_pred             eeccceeEecCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence            44444444555555  89999999999999999998 557777888877754311000 0   000000000      00


Q ss_pred             cccceecCCCCcCccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844           91 SANHVELSPSDAGFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                      ..+.+.+.....+...   ...+.+.++.+.-     .....+|            ...+++++++||+ ..|+......
T Consensus        92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~  171 (232)
T cd03218          92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD  171 (232)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence            0000000000000000   0011122222110     0000111            1247899999998 8899999999


Q ss_pred             HHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       150 Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +.+.+.+... +..+|++|++.+. ...+.+|+.+
T Consensus       172 ~~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~  205 (232)
T cd03218         172 IQKIIKILKDRGIGVLITDHNVRE-TLSITDRAYI  205 (232)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            9998887643 4567777776553 3445566543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=99.02  E-value=6.7e-09  Score=88.90  Aligned_cols=199  Identities=21%  Similarity=0.179  Sum_probs=118.6

Q ss_pred             CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceec
Q 017844           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL   97 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (365)
                      +.+++..+...+..++.- +.++|+-|+|||.+.|++...+.......+.++...+      ..     ..+......++
T Consensus        36 h~e~l~~l~~~i~d~qg~-~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~------s~-----~~~~~ai~~~l  103 (269)
T COG3267          36 HNEALLMLHAAIADGQGI-LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTL------SD-----ATLLEAIVADL  103 (269)
T ss_pred             hhHHHHHHHHHHhcCCce-EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcch------hH-----HHHHHHHHHHh
Confidence            567777888888776632 8999999999999999777655433332223322111      00     00000000111


Q ss_pred             CCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh---hhcCceeEEEEecCCCc--
Q 017844           98 SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME---KYSASCRLILCCNSSSK--  172 (365)
Q Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le---~~~~~~~~Il~t~~~~~--  172 (365)
                      .. .....-....+..-+.+.....    ...++.++++||++.+..++.+.|..+.+   +......++++....-.  
T Consensus       104 ~~-~p~~~~~~~~e~~~~~L~al~~----~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~  178 (269)
T COG3267         104 ES-QPKVNVNAVLEQIDRELAALVK----KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPR  178 (269)
T ss_pred             cc-CccchhHHHHHHHHHHHHHHHH----hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchh
Confidence            11 1110111111122222222111    12344799999999999888887665553   33344556666653321  


Q ss_pred             ----ccHHHhcccee-EEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          173 ----VTEAIRSRCLN-IRINSPTEEQIVKVLEFIAKKEGL---QLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       173 ----l~~~l~sR~~~-i~~~~~~~~~~~~iL~~~~~~~~~---~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                          ....+..||.. +.++|++.++...+|+..++..+.   -++++++..++..+.|-+|...+...
T Consensus       179 lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~  247 (269)
T COG3267         179 LRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT  247 (269)
T ss_pred             hchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence                23466778886 999999999999999999887654   36799999999999996655444443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.01  E-value=2.3e-10  Score=104.13  Aligned_cols=169  Identities=13%  Similarity=0.248  Sum_probs=94.6

Q ss_pred             CccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc-ceeccccc---
Q 017844           13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTT---   88 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~---   88 (365)
                      ..-+|...+++.+.-.+..|.+  +.|.||+||||||++|+||+ +..++.+.+.+++..+...|-.+ ...+.|..   
T Consensus        12 ~k~yg~~~av~~isl~i~~Gef--~~lLGPSGcGKTTlLR~IAG-fe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YAL   88 (352)
T COG3842          12 SKSFGDFTAVDDISLDIKKGEF--VTLLGPSGCGKTTLLRMIAG-FEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYAL   88 (352)
T ss_pred             eeecCCeeEEecceeeecCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhhcccceeecCccc
Confidence            3445555666667667777777  88999999999999999999 88999999999998773333221 11110010   


Q ss_pred             ---cccccceecCCCCcCccchhHHHHHHHHHH---------hcCCCCCCC------------CCCceEEEEeCC-CCCC
Q 017844           89 ---LSSANHVELSPSDAGFQDRYVVQEVIKEMA---------KNRPIDTKG------------KRGFKVLVLNEV-DKLS  143 (365)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~------------~~~~~vliiDE~-~~L~  143 (365)
                         ++..+.+.+.-.-.....+..+++...++.         ...+..+|+            ..+++++++||+ ..|+
T Consensus        89 FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD  168 (352)
T COG3842          89 FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD  168 (352)
T ss_pred             CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchh
Confidence               011111111111001011111222222221         111212221            347899999998 7788


Q ss_pred             HHHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhccceeEE
Q 017844          144 REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRCLNIR  185 (365)
Q Consensus       144 ~~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR~~~i~  185 (365)
                      ......+...+.+.  ..+..+|++|++.+.-. ++.+|+.+.+
T Consensus       169 ~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl-~msDrI~Vm~  211 (352)
T COG3842         169 AKLREQMRKELKELQRELGITFVYVTHDQEEAL-AMSDRIAVMN  211 (352)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhccceEEcc
Confidence            77665555555443  22678999999877422 3455654433

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.01  E-value=4.6e-10  Score=97.23  Aligned_cols=155  Identities=16%  Similarity=0.165  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccc-c-----
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN-H-----   94 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----   94 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++......+....  +  ....... .     
T Consensus        26 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~i~~~~~~~~--i--~~~~q~~~~~~~~t   98 (214)
T PRK13543         26 VFGPLDFHVDAGEA--LLVQGDNGAGKTTLLRVLAG-LLHVESGQIQIDGKTATRGDRSRF--M--AYLGHLPGLKADLS   98 (214)
T ss_pred             eeecceEEECCCCE--EEEEcCCCCCHHHHHHHHhC-CCCCCCeeEEECCEEccchhhhhc--e--EEeecCcccccCCc
Confidence            34444444445544  89999999999999999999 567777888777654311000000  0  0000000 0     


Q ss_pred             ----eecCCCCcCccchhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844           95 ----VELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus        95 ----~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                          +.+.....+.......++.+..+.-     .....+|            ...+++++++||+ ..|+......+.+
T Consensus        99 ~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  178 (214)
T PRK13543         99 TLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNR  178 (214)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence                0000000000000111222222110     0000111            1247899999998 8899999999999


Q ss_pred             HHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          153 TMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       153 ~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+.+... +..+|++|++.+.+ +.+.+|...
T Consensus       179 ~l~~~~~~~~tiii~sH~~~~~-~~~~~~i~~  209 (214)
T PRK13543        179 MISAHLRGGGAALVTTHGAYAA-PPVRTRMLT  209 (214)
T ss_pred             HHHHHHhCCCEEEEEecChhhh-hhhcceEEE
Confidence            9876533 45566666665533 344455433

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.01  E-value=1.2e-09  Score=94.86  Aligned_cols=54  Identities=19%  Similarity=0.319  Sum_probs=39.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|+..
T Consensus       155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~  210 (216)
T TIGR00960       155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL-VETYRHRTLT  210 (216)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            47899999998 88999999999999987643 4567777776553 3344455443

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.00  E-value=1.5e-09  Score=90.27  Aligned_cols=157  Identities=15%  Similarity=0.258  Sum_probs=91.0

Q ss_pred             CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC-----ccceeccccceecCCCcceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA-----EKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      +++.-.+|..++++.+.-.+..+..  .-|.||+||||||++|++-+ ++...+     |.+.+++.++ ..+.-...++
T Consensus        11 ~~l~~yYg~~~aL~~i~l~i~~~~V--TAlIGPSGcGKST~LR~lNR-mndl~~~~r~~G~v~~~g~ni-~~~~~d~~~l   86 (253)
T COG1117          11 RDLNLYYGDKHALKDINLDIPKNKV--TALIGPSGCGKSTLLRCLNR-MNDLIPGARVEGEVLLDGKNI-YDPKVDVVEL   86 (253)
T ss_pred             cceeEEECchhhhccCceeccCCce--EEEECCCCcCHHHHHHHHHh-hcccCcCceEEEEEEECCeec-cCCCCCHHHH
Confidence            4566678888888888777766666  78999999999999999977 554443     5566666655 3331111110


Q ss_pred             cc--c-ccccc--------cceecCCCCcCccchhHHHHHHHHH----H---------hcCCCCCCCC------------
Q 017844           85 EL--T-TLSSA--------NHVELSPSDAGFQDRYVVQEVIKEM----A---------KNRPIDTKGK------------  128 (365)
Q Consensus        85 ~~--~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~----~---------~~~~~~~~~~------------  128 (365)
                      -.  . .+..+        +.+.+.+.-.+..+ ..+.+..+..    +         .....++|+.            
T Consensus        87 Rr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA  165 (253)
T COG1117          87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA  165 (253)
T ss_pred             HHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence            00  0 00000        01111111111111 1122222111    1         1122233322            


Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      -++.|+++||+ ..|++-+...+-+++.+...+..+|++|++..
T Consensus       166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq  209 (253)
T COG1117         166 VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ  209 (253)
T ss_pred             cCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence            27899999998 78888877778888888878888999998765

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.00  E-value=2.3e-10  Score=99.72  Aligned_cols=181  Identities=17%  Similarity=0.209  Sum_probs=96.7

Q ss_pred             cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceec-ccc-----
Q 017844           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDL-ELT-----   87 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~-~~~-----   87 (365)
                      +...+++.+...+..|.+  +.+.||+|||||||++++++ +..+..|.+.+++......+..   +...+ .+.     
T Consensus        13 ~~~~il~~ls~~i~~G~i--~~iiGpNG~GKSTLLk~l~g-~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~   89 (258)
T COG1120          13 GGKPILDDLSFSIPKGEI--TGILGPNGSGKSTLLKCLAG-LLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF   89 (258)
T ss_pred             CCeeEEecceEEecCCcE--EEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence            445555666666666666  89999999999999999999 6788889999998755111100   00000 000     


Q ss_pred             ccccccceecCCCC----c---CccchhHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CCC
Q 017844           88 TLSSANHVELSPSD----A---GFQDRYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (365)
Q Consensus        88 ~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~~~-----~~~~~~~~~~------------~~~~~vliiDE~-~~L  142 (365)
                      .++..+.+.+....    .   +..+...+.+.++..     +...-..+|+            .++++|+++||+ ..|
T Consensus        90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L  169 (258)
T COG1120          90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL  169 (258)
T ss_pred             CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence            00000011111000    0   111111222223222     1111111221            347799999999 789


Q ss_pred             CHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccc------eeEEecCCCHHHHHHHHHHH
Q 017844          143 SREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRC------LNIRINSPTEEQIVKVLEFI  201 (365)
Q Consensus       143 ~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~------~~i~~~~~~~~~~~~iL~~~  201 (365)
                      +...|-.+++++.+...  +..+|++.++.. +--...++.      .++....|..--..+.++.+
T Consensus       170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~V  235 (258)
T COG1120         170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVLTEENLREV  235 (258)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHH
Confidence            99999999999987652  355666666654 222233332      34555555443344444433

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.99  E-value=2.9e-10  Score=102.91  Aligned_cols=159  Identities=18%  Similarity=0.329  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee-cCCCcceecccccccccccee---
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-DAGSRNIDLELTTLSSANHVE---   96 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---   96 (365)
                      +++.+...++.|.+  +.|.||+||||||+++.||+ |..++.|.+.+++..++. .|..+...+-|....-..|..   
T Consensus        18 ~l~~i~l~i~~Gef--~vllGPSGcGKSTlLr~IAG-Le~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~   94 (338)
T COG3839          18 VLKDVNLDIEDGEF--VVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE   94 (338)
T ss_pred             eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence            55555556667777  99999999999999999999 889999999999987632 333333332111111111110   


Q ss_pred             ---cCCCCcCccchhHHHHHHHHHHhc---------CCCCCCCC------------CCceEEEEeCC-CCCCHHHHHHHH
Q 017844           97 ---LSPSDAGFQDRYVVQEVIKEMAKN---------RPIDTKGK------------RGFKVLVLNEV-DKLSREAQHSLR  151 (365)
Q Consensus        97 ---~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~------------~~~~vliiDE~-~~L~~~~~~~Ll  151 (365)
                         +...-.+ ..+..+.+.+++.+..         .|..+|+.            .+++++++||+ .+|+......+.
T Consensus        95 Niaf~Lk~~~-~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr  173 (338)
T COG3839          95 NIAFGLKLRG-VPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMR  173 (338)
T ss_pred             HhhhhhhhCC-CchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHH
Confidence               1000000 1111222222332222         22233322            37889999998 678887776666


Q ss_pred             HHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       152 ~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ..+.+...  ...+|.+|++.... -++-+|..++
T Consensus       174 ~ei~~lh~~l~~T~IYVTHDq~EA-mtladri~Vm  207 (338)
T COG3839         174 SEIKKLHERLGTTTIYVTHDQVEA-MTLADRIVVM  207 (338)
T ss_pred             HHHHHHHHhcCCcEEEEcCCHHHH-HhhCCEEEEE
Confidence            66655432  36678888776532 2455555433

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.99  E-value=5.8e-10  Score=93.73  Aligned_cols=139  Identities=17%  Similarity=0.247  Sum_probs=78.1

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (365)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+. .       .......+.+.+++......
T Consensus        22 ~i~~G~~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~-~-------~~~~~~~i~~~~q~~~~~~~   90 (178)
T cd03229          22 NIEAGEI--VALLGPSGSGKSTLLRCIAG-LEEPDSGSILIDGEDLTDLED-E-------LPPLRRRIGMVFQDFALFPH   90 (178)
T ss_pred             EEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEccccch-h-------HHHHhhcEEEEecCCccCCC
Confidence            3444444  89999999999999999998 556777878777654311000 0       00001112222222221111


Q ss_pred             hHHHHHHH---------HHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCc--eeEEEEecCCCcccH
Q 017844          108 YVVQEVIK---------EMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTE  175 (365)
Q Consensus       108 ~~~~~~l~---------~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~--~~~Il~t~~~~~l~~  175 (365)
                      .++.+.+.         .+.-..    ....+++++++||+ ..|+...+..+.+.+.+....  ..+|+++++.+. .+
T Consensus        91 ~t~~~~l~~~lS~G~~qr~~la~----al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~  165 (178)
T cd03229          91 LTVLENIALGLSGGQQQRVALAR----ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE-AA  165 (178)
T ss_pred             CCHHHheeecCCHHHHHHHHHHH----HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH
Confidence            12222211         010000    11346789999998 789999999999999876543  566777766543 23


Q ss_pred             HHhccce
Q 017844          176 AIRSRCL  182 (365)
Q Consensus       176 ~l~sR~~  182 (365)
                      .+.+++.
T Consensus       166 ~~~d~i~  172 (178)
T cd03229         166 RLADRVV  172 (178)
T ss_pred             HhcCEEE
Confidence            3444443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.99  E-value=2.8e-09  Score=102.24  Aligned_cols=168  Identities=20%  Similarity=0.271  Sum_probs=100.3

Q ss_pred             CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce---eccc
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI---DLEL   86 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~---~~~~   86 (365)
                      .+|.+++|+..+++.+...+..+  .+++|+||+|+|||++++.+++ +..+..+...+++..+ .+..+...   .+..
T Consensus       188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~g-llpp~~g~e~le~~~i-~s~~g~~~~~~~~~~  263 (506)
T PRK09862        188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRING-LLPDLSNEEALESAAI-LSLVNAESVQKQWRQ  263 (506)
T ss_pred             cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhc-cCCCCCCcEEEecchh-hhhhccccccCCcCC
Confidence            37888899999888877666544  4599999999999999999998 4455555444444333 11111000   0000


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------  157 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------  157 (365)
                      ..+.++.|-            .+...++..-....+ +.-......++++||++.++...++.|++.||+.         
T Consensus       264 rPfr~ph~~------------~s~~~l~GGg~~~~p-G~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~  330 (506)
T PRK09862        264 RPFRSPHHS------------ASLTAMVGGGAIPGP-GEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRA  330 (506)
T ss_pred             CCccCCCcc------------chHHHHhCCCceehh-hHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCc
Confidence            111111110            000011100000000 0001234479999999999999999999999753         


Q ss_pred             ----cCceeEEEEecCCC---------------------cccHHHhccce-eEEecCCCHHHH
Q 017844          158 ----SASCRLILCCNSSS---------------------KVTEAIRSRCL-NIRINSPTEEQI  194 (365)
Q Consensus       158 ----~~~~~~Il~t~~~~---------------------~l~~~l~sR~~-~i~~~~~~~~~~  194 (365)
                          +.++.+|.++|...                     ++..++.+|+. .+.+++++.+++
T Consensus       331 ~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l  393 (506)
T PRK09862        331 KITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGIL  393 (506)
T ss_pred             ceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHH
Confidence                33466777777542                     36678999996 688998887643

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.98  E-value=6.6e-10  Score=96.74  Aligned_cols=148  Identities=17%  Similarity=0.212  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+  .  ..       ...+.+.++
T Consensus        17 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~--~--~~-------~~~i~~v~q   82 (220)
T cd03263          17 AVDDLSLNVYKGEI--FGLLGHNGAGKTTTLKMLTG-ELRPTSGTAYINGYSIRTDR--K--AA-------RQSLGYCPQ   82 (220)
T ss_pred             eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccch--H--HH-------hhhEEEecC
Confidence            44444444555554  89999999999999999999 56777888877765431000  0  00       000111111


Q ss_pred             CcCcc------------------ch----hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844          101 DAGFQ------------------DR----YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D  140 (365)
Q Consensus       101 ~~~~~------------------~~----~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~  140 (365)
                      +....                  ..    ..+.+.++.+.-     .....+|            ...+++++++||+ .
T Consensus        83 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~  162 (220)
T cd03263          83 FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTS  162 (220)
T ss_pred             cCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence            10000                  00    011122211100     0000111            1347899999998 8


Q ss_pred             CCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          141 KLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       141 ~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .|+......+.+.+.+...+..+|+++++.+. ...+.+|+..
T Consensus       163 ~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~-~~~~~d~i~~  204 (220)
T cd03263         163 GLDPASRRAIWDLILEVRKGRSIILTTHSMDE-AEALCDRIAI  204 (220)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhcCEEEE
Confidence            89999999999999887656666777766553 3445555543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.98  E-value=5.9e-10  Score=96.54  Aligned_cols=160  Identities=19%  Similarity=0.291  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccccc------ccccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT------LSSAN   93 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------~~~~~   93 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+. .....+....      .+..+
T Consensus        15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   91 (213)
T cd03259          15 ALDDLSLTVEPGEF--LALLGPSGCGKTTLLRLIAG-LERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE   91 (213)
T ss_pred             eecceeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence            34444444455555  89999999999999999998 557778888877754311000 0000000000      00000


Q ss_pred             ceecCCCCcCccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844           94 HVELSPSDAGFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus        94 ~~~~~~~~~~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                      .+.+.....+...   ...+.+.++.+.-     ..+..+|            ...+++++++||+ ..|+......+.+
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~  171 (213)
T cd03259          92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELRE  171 (213)
T ss_pred             HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence            0000000000000   0011222222110     0000111            1247899999998 7899999999999


Q ss_pred             HHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       153 ~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+.+...  +..+|++|++.+ ....+.+|+..+
T Consensus       172 ~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l  204 (213)
T cd03259         172 ELKELQRELGITTIYVTHDQE-EALALADRIAVM  204 (213)
T ss_pred             HHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEE
Confidence            9987642  456667776654 334455555433

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.98  E-value=1.8e-09  Score=94.86  Aligned_cols=152  Identities=17%  Similarity=0.203  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+...+.......       ...+.+.++
T Consensus        20 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~-------~~~i~~~~q   89 (233)
T cd03258          20 ALKDVSLSVPKGEI--FGIIGRSGAGKSTLIRCING-LERPTSGSVLVDGTDLTLLSGKELRKA-------RRRIGMIFQ   89 (233)
T ss_pred             eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcccCCHHHHHHH-------HhheEEEcc
Confidence            34444444455554  99999999999999999998 567778888887754311000000000       001111111


Q ss_pred             CcCccchh----------------------HHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844          101 DAGFQDRY----------------------VVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D  140 (365)
Q Consensus       101 ~~~~~~~~----------------------~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~  140 (365)
                      +.......                      .+.+.++.+.-     ..+..+|            ...+++++++||+ .
T Consensus        90 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~  169 (233)
T cd03258          90 HFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATS  169 (233)
T ss_pred             CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence            11110000                      11111211110     0000111            1247789999998 7


Q ss_pred             CCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       141 ~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .|+......+.+.+.+...  +..+|+++++.+ ....+.+|+.+
T Consensus       170 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~  213 (233)
T cd03258         170 ALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAV  213 (233)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            8999999999999987643  456777776654 33445566543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.98  E-value=1.8e-09  Score=93.62  Aligned_cols=152  Identities=14%  Similarity=0.231  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+...+.......       ...+.+.++
T Consensus        17 il~~is~~i~~G~~--~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~-------~~~i~~~~q   86 (214)
T TIGR02673        17 ALHDVSLHIRKGEF--LFLTGPSGAGKTTLLKLLYG-ALTPSRGQVRIAGEDVNRLRGRQLPLL-------RRRIGVVFQ   86 (214)
T ss_pred             eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcccCCHHHHHHH-------HhheEEEec
Confidence            44445445555655  89999999999999999998 456777878777654310000000000       000111111


Q ss_pred             CcCcc------------------ch----hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844          101 DAGFQ------------------DR----YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D  140 (365)
Q Consensus       101 ~~~~~------------------~~----~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~  140 (365)
                      +....                  ..    ..+.+.++.+.-     ..+..+|            ...+++++++||+ .
T Consensus        87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~  166 (214)
T TIGR02673        87 DFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTG  166 (214)
T ss_pred             ChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence            11000                  00    011122222110     0000111            1247899999998 7


Q ss_pred             CCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       141 ~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .|+......+.+.+.+... +..+|++|++.+. ...+.+|+.+
T Consensus       167 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~  209 (214)
T TIGR02673       167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSL-VDRVAHRVII  209 (214)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEE
Confidence            8999999999999987643 4567777766543 3344455443

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.98  E-value=4.7e-10  Score=102.42  Aligned_cols=148  Identities=18%  Similarity=0.242  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++......+. .   .       ...+.+.++
T Consensus        19 ~l~~vsl~i~~Ge~--~~l~G~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~-~---~-------~~~i~~v~q   84 (303)
T TIGR01288        19 VVNDLSFTIARGEC--FGLLGPNGAGKSTIARMLLG-MISPDRGKITVLGEPVPSRAR-L---A-------RVAIGVVPQ   84 (303)
T ss_pred             EEcceeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECcccHH-H---H-------hhcEEEEec
Confidence            44555445555655  99999999999999999999 557777888877654310000 0   0       000111111


Q ss_pred             CcCcc------------------chh----HHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844          101 DAGFQ------------------DRY----VVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D  140 (365)
Q Consensus       101 ~~~~~------------------~~~----~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~  140 (365)
                      +....                  ...    .+.+.++.+.-     .....+|            ...+++++++||+ .
T Consensus        85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~  164 (303)
T TIGR01288        85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT  164 (303)
T ss_pred             cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            11100                  000    01111111100     0000111            1247899999998 8


Q ss_pred             CCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       141 ~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .|++.....+.+.+.+... +..+|++|++.+ ....+.+|+..
T Consensus       165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~  207 (303)
T TIGR01288       165 GLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCV  207 (303)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence            8999999999999987643 445666666554 44455666643

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.98  E-value=2.6e-09  Score=91.67  Aligned_cols=148  Identities=14%  Similarity=0.136  Sum_probs=84.5

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC---CCCccceeccccceecCCCcceeccccccccccceecC
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG---PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (365)
                      ++.+.-.+..|..  +.|.||+|+||||+++.+++. ..   +..+.+.+++......+ .          .....+.+.
T Consensus        23 l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~-~~~~~~~~G~i~i~g~~~~~~~-~----------~~~~~i~~~   88 (202)
T cd03233          23 LKDFSGVVKPGEM--VLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYKEFA-E----------KYPGEIIYV   88 (202)
T ss_pred             eeeEEEEECCCcE--EEEECCCCCCHHHHHHHhccc-CCCCCCcceEEEECCEECccch-h----------hhcceEEEE
Confidence            3333334444544  899999999999999999994 44   56777777765430000 0          001112333


Q ss_pred             CCCcCccchhHHHHHHHHHHh----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--
Q 017844           99 PSDAGFQDRYVVQEVIKEMAK----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--  159 (365)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--  159 (365)
                      +++.......++.+.+.....    .....++            ...+++++++||+ ..|+...+..+.+.+.+...  
T Consensus        89 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~  168 (202)
T cd03233          89 SEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL  168 (202)
T ss_pred             ecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence            333222222234444432211    1111111            1236789999998 88999999999999988643  


Q ss_pred             ceeEEEEecCCCcccHHHhcccee
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +..+|+++++.......+.+++..
T Consensus       169 ~~t~ii~~~h~~~~~~~~~d~i~~  192 (202)
T cd03233         169 KTTTFVSLYQASDEIYDLFDKVLV  192 (202)
T ss_pred             CCEEEEEEcCCHHHHHHhCCeEEE
Confidence            345666666654333445555433

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.98  E-value=1.9e-09  Score=93.67  Aligned_cols=148  Identities=18%  Similarity=0.234  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+.    ..       ...+.+.++
T Consensus        20 il~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~----~~-------~~~i~~~~q   85 (218)
T cd03266          20 AVDGVSFTVKPGEV--TGLLGPNGAGKTTTLRMLAG-LLEPDAGFATVDGFDVVKEPA----EA-------RRRLGFVSD   85 (218)
T ss_pred             eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CcCCCCceEEECCEEcccCHH----HH-------HhhEEEecC
Confidence            34444444444544  89999999999999999999 567777888877754411000    00       001111111


Q ss_pred             CcCccch----------------------hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844          101 DAGFQDR----------------------YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D  140 (365)
Q Consensus       101 ~~~~~~~----------------------~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~  140 (365)
                      +......                      ..+.+.++.+.-     .....+|            ...+++++++||+ .
T Consensus        86 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~  165 (218)
T cd03266          86 STGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTT  165 (218)
T ss_pred             CcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence            1111000                      011112221100     0000111            1247899999998 8


Q ss_pred             CCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          141 KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       141 ~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .|+......+.+.|.+... +..+|++|++.+. ...+.+|+..
T Consensus       166 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~  208 (218)
T cd03266         166 GLDVMATRALREFIRQLRALGKCILFSTHIMQE-VERLCDRVVV  208 (218)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhcCEEEE
Confidence            8999999999999988643 4567777776553 3344455433

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.97  E-value=2.6e-09  Score=92.20  Aligned_cols=141  Identities=18%  Similarity=0.285  Sum_probs=78.2

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCcc--
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ--  105 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  105 (365)
                      .+..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++.... .. ..   .       ...+.+.+++....  
T Consensus        22 ~i~~G~~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~-~~-~~---~-------~~~i~~~~q~~~~~~~   86 (208)
T cd03268          22 HVKKGEI--YGFLGPNGAGKTTTMKIILG-LIKPDSGEITFDGKSYQ-KN-IE---A-------LRRIGALIEAPGFYPN   86 (208)
T ss_pred             EEcCCcE--EEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCCccc-ch-HH---H-------HhhEEEecCCCccCcc
Confidence            3344444  89999999999999999998 55677788877765431 00 00   0       00011111111100  


Q ss_pred             ----------------chhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844          106 ----------------DRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLR  151 (365)
Q Consensus       106 ----------------~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll  151 (365)
                                      ....+.+.++.+.     ......+|            ...+++++++||+ ..|+......+.
T Consensus        87 ~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~  166 (208)
T cd03268          87 LTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR  166 (208)
T ss_pred             CcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence                            0111222222210     00000111            1347789999998 789999999999


Q ss_pred             HHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          152 RTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       152 ~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      +.+.+... +..+|++|++.+ ....+.+|+..+
T Consensus       167 ~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l  199 (208)
T cd03268         167 ELILSLRDQGITVLISSHLLS-EIQKVADRIGII  199 (208)
T ss_pred             HHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEE
Confidence            99987643 455666666544 334455555433

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.97  E-value=1.6e-09  Score=83.59  Aligned_cols=51  Identities=18%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhhhcC----------ceeEEEEecCC-C-----cccHHHhccce
Q 017844          132 KVLVLNEVDKLSREAQHSLRRTMEKYSA----------SCRLILCCNSS-S-----KVTEAIRSRCL  182 (365)
Q Consensus       132 ~vliiDE~~~L~~~~~~~Ll~~le~~~~----------~~~~Il~t~~~-~-----~l~~~l~sR~~  182 (365)
                      .|+++||+++..+..|.+|++.|+|..-          ...+|++|.++ +     .++++.++|+.
T Consensus        64 ~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~  130 (131)
T PF07726_consen   64 NILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM  130 (131)
T ss_dssp             SEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred             ceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence            5999999999999999999999987421          11244544444 3     48888888874

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.97  E-value=2.2e-09  Score=91.38  Aligned_cols=139  Identities=17%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc-CCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccc
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD  106 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (365)
                      .+..|..  +.|.||+|+||||+++.+++... .+..+.+.+++... .    .         .....+.+.++......
T Consensus        29 ~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~-~----~---------~~~~~i~~~~q~~~~~~   92 (192)
T cd03232          29 YVKPGTL--TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL-D----K---------NFQRSTGYVEQQDVHSP   92 (192)
T ss_pred             EEeCCcE--EEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh-H----H---------HhhhceEEecccCcccc
Confidence            3344444  89999999999999999998432 35667777666433 0    0         00111233333322222


Q ss_pred             hhHHHHHHHHHHhcCCC----------CCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCccc
Q 017844          107 RYVVQEVIKEMAKNRPI----------DTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVT  174 (365)
Q Consensus       107 ~~~~~~~l~~~~~~~~~----------~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~  174 (365)
                      ..++.+.+........+          ......+++++++||+ ..|+......+.+.+.+... +..+|++|++.+...
T Consensus        93 ~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~  172 (192)
T cd03232          93 NLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASI  172 (192)
T ss_pred             CCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHH
Confidence            22344443321110011          0012346799999998 78999999999999987643 466777777765222


Q ss_pred             HHHhccce
Q 017844          175 EAIRSRCL  182 (365)
Q Consensus       175 ~~l~sR~~  182 (365)
                      ..+.+|+.
T Consensus       173 ~~~~d~i~  180 (192)
T cd03232         173 FEKFDRLL  180 (192)
T ss_pred             HhhCCEEE
Confidence            33344443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.97  E-value=4.8e-09  Score=84.23  Aligned_cols=125  Identities=22%  Similarity=0.336  Sum_probs=74.5

Q ss_pred             ccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccc
Q 017844           16 IVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN   93 (365)
Q Consensus        16 ig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (365)
                      +|.....+.++..++.  ....+++|+|++|+||+++|+.+...- .......                           
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~-~~~~~~~---------------------------   52 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS-GRANGPF---------------------------   52 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT-TTCCS-C---------------------------
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc-CccCCCe---------------------------
Confidence            4555566666655543  222349999999999999999987732 1111100                           


Q ss_pred             ceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-cCceeEEEEecCCC-
Q 017844           94 HVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-SASCRLILCCNSSS-  171 (365)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-~~~~~~Il~t~~~~-  171 (365)
                       +...+....       .+.+...            ....++|+|++.|+.+.|..|+..++.. ..++++|++++... 
T Consensus        53 -~~~~~~~~~-------~~~l~~a------------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~  112 (138)
T PF14532_consen   53 -IVIDCASLP-------AELLEQA------------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLE  112 (138)
T ss_dssp             -CCCCHHCTC-------HHHHHHC------------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CC
T ss_pred             -EEechhhCc-------HHHHHHc------------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHH
Confidence             000000000       1222221            2258999999999999999999999864 56789999888654 


Q ss_pred             ------cccHHHhccce--eEEecC
Q 017844          172 ------KVTEAIRSRCL--NIRINS  188 (365)
Q Consensus       172 ------~l~~~l~sR~~--~i~~~~  188 (365)
                            .+.+.+..|+.  .+.+++
T Consensus       113 ~l~~~~~~~~~L~~~l~~~~i~lPp  137 (138)
T PF14532_consen  113 ELVEEGRFSPDLYYRLSQLEIHLPP  137 (138)
T ss_dssp             CHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred             HHhhccchhHHHHHHhCCCEEeCCC
Confidence                  25566666653  555554

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.96  E-value=1.5e-09  Score=90.54  Aligned_cols=134  Identities=20%  Similarity=0.317  Sum_probs=77.6

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (365)
                      ++.+.-.+..|..  +.+.||+|+||||+++++++ +..+..+.+.+++......+..          .....+.+..++
T Consensus        18 l~~i~~~i~~G~~--~~l~G~nGsGKstLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~----------~~~~~i~~~~~~   84 (171)
T cd03228          18 LKDVSLTIKPGEK--VAIVGPSGSGKSTLLKLLLR-LYDPTSGEILIDGVDLRDLDLE----------SLRKNIAYVPQD   84 (171)
T ss_pred             ccceEEEEcCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCCCEEEECCEEhhhcCHH----------HHHhhEEEEcCC
Confidence            3333333444544  99999999999999999999 5567777777776433100000          000112222222


Q ss_pred             cCccchhHHHHHH------HHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844          102 AGFQDRYVVQEVI------KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus       102 ~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l  173 (365)
                      ..... .++.+.+      +.++-...    ...+++++++||+ ..|+......+.+.+.+...+..+|+++++.+.+
T Consensus        85 ~~~~~-~t~~e~lLS~G~~~rl~la~a----l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  158 (171)
T cd03228          85 PFLFS-GTIRENILSGGQRQRIAIARA----LLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI  158 (171)
T ss_pred             chhcc-chHHHHhhCHHHHHHHHHHHH----HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence            21111 1222221      11111011    1346789999998 7899999999999998775556677777776543

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.96  E-value=2.2e-09  Score=97.88  Aligned_cols=142  Identities=20%  Similarity=0.264  Sum_probs=81.9

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (365)
                      .+..|..  +.|.||+|+||||+++++++ +..++.|.+.+++......+ ..   .       ...+.+.++.......
T Consensus        24 ~i~~Gei--~~l~G~NGaGKTTLl~~l~G-l~~~~~G~i~i~g~~~~~~~-~~---~-------~~~ig~~~q~~~l~~~   89 (301)
T TIGR03522        24 EAQKGRI--VGFLGPNGAGKSTTMKIITG-YLPPDSGSVQVCGEDVLQNP-KE---V-------QRNIGYLPEHNPLYLD   89 (301)
T ss_pred             EEeCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccCh-HH---H-------HhceEEecCCCCCCCC
Confidence            3444544  89999999999999999998 66788888888775431100 00   0       0112222222111111


Q ss_pred             hHH----------------------HHHHHHHHhc----CCC-CCC------------CCCCceEEEEeCC-CCCCHHHH
Q 017844          108 YVV----------------------QEVIKEMAKN----RPI-DTK------------GKRGFKVLVLNEV-DKLSREAQ  147 (365)
Q Consensus       108 ~~~----------------------~~~l~~~~~~----~~~-~~~------------~~~~~~vliiDE~-~~L~~~~~  147 (365)
                      .++                      .+.++.+.-.    ... .+|            ...+++++++||+ ..|++...
T Consensus        90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~  169 (301)
T TIGR03522        90 MYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL  169 (301)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            111                      1122111000    000 111            1247899999998 88999999


Q ss_pred             HHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          148 HSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       148 ~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ..+.+.+.+......+|++|++.+ ....+.+|+.++
T Consensus       170 ~~l~~~l~~~~~~~tiii~sH~l~-~~~~~~d~i~~l  205 (301)
T TIGR03522       170 VEIRNVIKNIGKDKTIILSTHIMQ-EVEAICDRVIII  205 (301)
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence            999999988765555555655544 445566776443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.95  E-value=3.7e-09  Score=88.40  Aligned_cols=136  Identities=22%  Similarity=0.334  Sum_probs=78.7

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (365)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+.        .  .....+.+..++......
T Consensus        24 ~i~~Ge~--~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~~~~~~--------~--~~~~~i~~~~q~~~~~~~   90 (173)
T cd03246          24 SIEPGES--LAIIGPSGSGKSTLARLILG-LLRPTSGRVRLDGADISQWDP--------N--ELGDHVGYLPQDDELFSG   90 (173)
T ss_pred             EECCCCE--EEEECCCCCCHHHHHHHHHh-ccCCCCCeEEECCEEcccCCH--------H--HHHhheEEECCCCccccC
Confidence            3344444  89999999999999999999 556777877777654310000        0  000112222222221111


Q ss_pred             hHHHHHH------HHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhc
Q 017844          108 YVVQEVI------KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRS  179 (365)
Q Consensus       108 ~~~~~~l------~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~s  179 (365)
                       ++.+.+      +.++-...    ...+++++++||+ ..|+......+.+.+.+... +..+|+++++.+.+ . ..+
T Consensus        91 -tv~~~lLS~G~~qrv~la~a----l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~-~~d  163 (173)
T cd03246          91 -SIAENILSGGQRQRLGLARA----LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-A-SAD  163 (173)
T ss_pred             -cHHHHCcCHHHHHHHHHHHH----HhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-H-hCC
Confidence             222221      11111111    1346789999998 78999999999999987643 45677777776532 2 344


Q ss_pred             ccee
Q 017844          180 RCLN  183 (365)
Q Consensus       180 R~~~  183 (365)
                      |+..
T Consensus       164 ~v~~  167 (173)
T cd03246         164 RILV  167 (173)
T ss_pred             EEEE
Confidence            4433

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.95  E-value=7.8e-10  Score=99.23  Aligned_cols=54  Identities=9%  Similarity=0.174  Sum_probs=39.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~-~~~~~d~v~~  233 (269)
T cd03294         177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE-ALRLGDRIAI  233 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEE
Confidence            47899999998 88999999999999987642  4567777776553 3445555543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.95  E-value=6.3e-10  Score=95.78  Aligned_cols=158  Identities=15%  Similarity=0.204  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc-------ccccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT-------LSSAN   93 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~   93 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+..........+....       .+..+
T Consensus        15 ~l~~v~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e   91 (205)
T cd03226          15 ILDDLSLDLYAGEI--IALTGKNGAGKTTLAKILAG-LIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE   91 (205)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence            34444444455555  99999999999999999999 5677788887776543000000000000000       00000


Q ss_pred             ceecCCCCcCccchhHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHh
Q 017844           94 HVELSPSDAGFQDRYVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (365)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le  155 (365)
                      .+.+.....+ .....+.+.++.+.-.     .+..+|            ...+++++++||+ ..|++.....+.+.+.
T Consensus        92 ~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  170 (205)
T cd03226          92 ELLLGLKELD-AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR  170 (205)
T ss_pred             HHhhhhhhcC-ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            0000000000 0111223333322110     111111            1237899999998 8899999999999998


Q ss_pred             hhc-CceeEEEEecCCCcccHHHhcccee
Q 017844          156 KYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       156 ~~~-~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +.. .+..+|++|++.+. ...+.+|+..
T Consensus       171 ~~~~~~~tii~~sH~~~~-~~~~~d~i~~  198 (205)
T cd03226         171 ELAAQGKAVIVITHDYEF-LAKVCDRVLL  198 (205)
T ss_pred             HHHHCCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            763 34567777766553 3344455443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.95  E-value=6.9e-10  Score=96.62  Aligned_cols=147  Identities=18%  Similarity=0.238  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..+..+.+.+++......+  .  ..       ...+.+.++
T Consensus        15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~--~--~~-------~~~i~~~~q   80 (220)
T cd03265          15 AVRGVSFRVRRGEI--FGLLGPNGAGKTTTIKMLTT-LLKPTSGRATVAGHDVVREP--R--EV-------RRRIGIVFQ   80 (220)
T ss_pred             eeeceeEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEecCcCh--H--HH-------hhcEEEecC
Confidence            34444444444544  89999999999999999999 55777787777764431000  0  00       000111111


Q ss_pred             Cc-------------------Cccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844          101 DA-------------------GFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D  140 (365)
Q Consensus       101 ~~-------------------~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~  140 (365)
                      +.                   +...   ...+.+.++.+.-     ..+..+|            ...+++++++||+ .
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~  160 (220)
T cd03265          81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI  160 (220)
T ss_pred             CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            10                   0000   0011222222110     0011111            1247899999998 8


Q ss_pred             CCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       141 ~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .|+......+.+.+.+...  +..+|++|++.+. ...+.+|+.
T Consensus       161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~-~~~~~d~i~  203 (220)
T cd03265         161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE-AEQLCDRVA  203 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEE
Confidence            8999999999999987643  4567777776553 344556654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.95  E-value=2.5e-09  Score=93.09  Aligned_cols=157  Identities=17%  Similarity=0.249  Sum_probs=81.2

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc------cccccce
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANHV   95 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~   95 (365)
                      ++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++... ... .....+....      .+..+.+
T Consensus        20 l~~vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~-~~~-~~~i~~v~q~~~~~~~~tv~e~l   94 (220)
T cd03293          20 LEDISLSVEEGEF--VALVGPSGCGKSTLLRIIAG-LERPTSGEVLVDGEPV-TGP-GPDRGYVFQQDALLPWLTVLDNV   94 (220)
T ss_pred             EeceeEEEeCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEC-ccc-cCcEEEEecccccccCCCHHHHH
Confidence            3344344445544  89999999999999999998 5567778887776543 100 0000000000      0000000


Q ss_pred             ecCCCCcCccc---hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHH
Q 017844           96 ELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTM  154 (365)
Q Consensus        96 ~~~~~~~~~~~---~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~l  154 (365)
                      .+.....+...   ...+.+.++.+.     ...+..+|            ...+++++++||+ ..|+......+.+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l  174 (220)
T cd03293          95 ALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL  174 (220)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence            00000000000   001122222211     00111111            1237799999998 889999999999999


Q ss_pred             hhhc--CceeEEEEecCCCcccHHHhccceeE
Q 017844          155 EKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       155 e~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+..  .+..+|+++++.+.+ ..+.+|+..+
T Consensus       175 ~~~~~~~~~tiii~sH~~~~~-~~~~d~i~~l  205 (220)
T cd03293         175 LDIWRETGKTVLLVTHDIDEA-VFLADRVVVL  205 (220)
T ss_pred             HHHHHHcCCEEEEEecCHHHH-HHhCCEEEEE
Confidence            8763  245677777766532 3444554433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06526 transposase; Provisional

Probab=98.95  E-value=5e-09  Score=92.58  Aligned_cols=63  Identities=19%  Similarity=0.261  Sum_probs=42.7

Q ss_pred             CceEEEEeCCCCC--CHHHHHHHHHHHhhhcCceeEEEEecCCCc----------ccHHHhcc----ceeEEecCCCHH
Q 017844          130 GFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSSSK----------VTEAIRSR----CLNIRINSPTEE  192 (365)
Q Consensus       130 ~~~vliiDE~~~L--~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~----------l~~~l~sR----~~~i~~~~~~~~  192 (365)
                      ++.++||||++.+  +...++.|+.+++....+..+|++||.+..          +-.++.+|    |.++.|...+..
T Consensus       159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R  237 (254)
T PRK06526        159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYR  237 (254)
T ss_pred             cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcc
Confidence            4589999999876  467777888888765445668888887642          12234454    457777766544

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.95  E-value=6.4e-09  Score=86.01  Aligned_cols=131  Identities=18%  Similarity=0.270  Sum_probs=75.9

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (365)
                      .+..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++......+..   +.      ....+.+.++   ... 
T Consensus        22 ~i~~Ge~--~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~---~~------~~~~i~~~~q---LS~-   85 (163)
T cd03216          22 SVRRGEV--HALLGENGAGKSTLMKILSG-LYKPDSGEILVDGKEVSFASPR---DA------RRAGIAMVYQ---LSV-   85 (163)
T ss_pred             EEeCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEECCcCCHH---HH------HhcCeEEEEe---cCH-
Confidence            3444544  89999999999999999998 5567777777776443000000   00      0011222221   111 


Q ss_pred             hHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          108 YVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ... +.+. ++.  .    ...+++++++||+ ..|+......+.+.+.+... +..+|+++++.+. .+.+.+|+..
T Consensus        86 G~~-qrl~-lar--a----l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~~d~~~~  154 (163)
T cd03216          86 GER-QMVE-IAR--A----LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE-VFEIADRVTV  154 (163)
T ss_pred             HHH-HHHH-HHH--H----HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            111 1111 111  1    1245689999998 78999999999999987643 4566666666543 3344455543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.94  E-value=3.1e-09  Score=93.47  Aligned_cols=55  Identities=15%  Similarity=0.119  Sum_probs=40.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|++|++.+. ...+.+|+.++
T Consensus       153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~-~~~~~d~v~~l  210 (235)
T cd03261         153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVL  210 (235)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhcCEEEEE
Confidence            47899999998 78999999999999987643  4567777776553 34455565433

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.94  E-value=2.9e-09  Score=89.50  Aligned_cols=135  Identities=16%  Similarity=0.180  Sum_probs=78.6

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (365)
                      .+..|..  +.+.||+|+||||+++++++ +..+..+.+.+++... ... ..  .       ....+.+.+++..... 
T Consensus        24 ~i~~Ge~--~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~g~~~-~~~-~~--~-------~~~~i~~~~q~~~~~~-   88 (178)
T cd03247          24 ELKQGEK--IALLGRSGSGKSTLLQLLTG-DLKPQQGEITLDGVPV-SDL-EK--A-------LSSLISVLNQRPYLFD-   88 (178)
T ss_pred             EEcCCCE--EEEECCCCCCHHHHHHHHhc-cCCCCCCEEEECCEEH-HHH-HH--H-------HHhhEEEEccCCeeec-
Confidence            3444544  89999999999999999999 5567777777776433 000 00  0       0011122222211111 


Q ss_pred             hHHHHHH---------HHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHH
Q 017844          108 YVVQEVI---------KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI  177 (365)
Q Consensus       108 ~~~~~~l---------~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l  177 (365)
                      .++.+.+         +.+.-..    ....+++++++||+ ..|+......+.+.+.+...+..+|+++++.+.+ + .
T Consensus        89 ~tv~~~i~~~LS~G~~qrv~lar----al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~-~  162 (178)
T cd03247          89 TTLRNNLGRRFSGGERQRLALAR----ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI-E-H  162 (178)
T ss_pred             ccHHHhhcccCCHHHHHHHHHHH----HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-H-h
Confidence            1122211         0000000    11346799999998 7899999999999998775566778888776644 3 3


Q ss_pred             hcccee
Q 017844          178 RSRCLN  183 (365)
Q Consensus       178 ~sR~~~  183 (365)
                      .+|+..
T Consensus       163 ~d~~~~  168 (178)
T cd03247         163 MDKILF  168 (178)
T ss_pred             CCEEEE
Confidence            455433

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=8.2e-09  Score=103.66  Aligned_cols=131  Identities=21%  Similarity=0.392  Sum_probs=89.7

Q ss_pred             ccccCHHHHHHHHHHHHcC-----C--CCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecc
Q 017844           14 QVIVHQDIAQNLKKLVTEQ-----D--CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~~-----~--~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~   85 (365)
                      .++||+++++.+..++...     +  ... ++|.||.|+|||-+|+++|..+++.....+.++...|+.        + 
T Consensus       563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e--------v-  633 (898)
T KOG1051|consen  563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE--------V-  633 (898)
T ss_pred             hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh--------h-
Confidence            5789999999999998642     2  222 999999999999999999999988887777777765510        1 


Q ss_pred             ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-------
Q 017844           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------  158 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-------  158 (365)
                               .....+..++.......++.+.+ .        ...+.||++||++.-.+..++.|++++++..       
T Consensus       634 ---------skligsp~gyvG~e~gg~Lteav-r--------rrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr  695 (898)
T KOG1051|consen  634 ---------SKLIGSPPGYVGKEEGGQLTEAV-K--------RRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGR  695 (898)
T ss_pred             ---------hhccCCCcccccchhHHHHHHHH-h--------cCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCc
Confidence                     01111111111111122222222 2        2345899999999999999999999998642       


Q ss_pred             ----CceeEEEEecCCC
Q 017844          159 ----ASCRLILCCNSSS  171 (365)
Q Consensus       159 ----~~~~~Il~t~~~~  171 (365)
                          .++.||+|+|...
T Consensus       696 ~Vd~kN~I~IMTsn~~~  712 (898)
T KOG1051|consen  696 EVDFKNAIFIMTSNVGS  712 (898)
T ss_pred             EeeccceEEEEecccch
Confidence                4567888877654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.94  E-value=2.8e-09  Score=92.42  Aligned_cols=54  Identities=13%  Similarity=0.300  Sum_probs=38.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|++.....+.+.+.+.. ....+|++|++.+. ...+.+|+..
T Consensus       153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~-~~~~~d~i~~  208 (214)
T cd03292         153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL-VDTTRHRVIA  208 (214)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            47899999998 7899999999999998764 34567777766543 2334444433

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.94  E-value=3.7e-09  Score=91.09  Aligned_cols=160  Identities=14%  Similarity=0.160  Sum_probs=83.3

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccc------cccccccc
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLEL------TTLSSANH   94 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~   94 (365)
                      ++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++... ..+. ........      ...+..+.
T Consensus        18 l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~tv~~~   93 (207)
T PRK13539         18 FSGLSFTLAAGEA--LVLTGPNGSGKTTLLRLIAG-LLPPAAGTIKLDGGDI-DDPDVAEACHYLGHRNAMKPALTVAEN   93 (207)
T ss_pred             EeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEeC-cchhhHhhcEEecCCCcCCCCCcHHHH
Confidence            3333334445554  89999999999999999999 5567777777776432 1100 00000000      00000000


Q ss_pred             eecCCCCcCccchhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844           95 VELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (365)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~  156 (365)
                      +.+.....+ .....+.+.++.+.-     .....+|            ...+++++++||+ ..|+......+.+.|.+
T Consensus        94 l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  172 (207)
T PRK13539         94 LEFWAAFLG-GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA  172 (207)
T ss_pred             HHHHHHhcC-CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            000000000 001112222222210     0000111            1246799999998 78999999999999987


Q ss_pred             h-cCceeEEEEecCCCcccHHHhccceeEEecCCCH
Q 017844          157 Y-SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTE  191 (365)
Q Consensus       157 ~-~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~  191 (365)
                      . .....+|++|++.+.+..   .  .++.+.+|+.
T Consensus       173 ~~~~~~tiii~sH~~~~~~~---~--~~~~~~~~~~  203 (207)
T PRK13539        173 HLAQGGIVIAATHIPLGLPG---A--RELDLGPFAA  203 (207)
T ss_pred             HHHCCCEEEEEeCCchhhcc---C--cEEeecCccC
Confidence            5 334667788877765543   3  3455555443

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=3.2e-08  Score=87.06  Aligned_cols=192  Identities=20%  Similarity=0.309  Sum_probs=112.7

Q ss_pred             cccCHHHHHHHHHHHH-----------cC----CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844           15 VIVHQDIAQNLKKLVT-----------EQ----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus        15 iig~~~~~~~l~~~l~-----------~~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      ++||+.+++.|.-++-           ..    ...|+++.||.|+|||.||+.+|+.|.-|..    +           
T Consensus        63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFa----i-----------  127 (408)
T COG1219          63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFA----I-----------  127 (408)
T ss_pred             eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCee----e-----------
Confidence            4788888765543321           11    1235999999999999999999997743210    0           


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------------HH
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------------RE  145 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--------------~~  145 (365)
                        .+.  +        .+.  +.| +-...++.++..+.+....+.. ...+.|++|||+|.+.              ..
T Consensus       128 --ADA--T--------tLT--EAG-YVGEDVENillkLlqaadydV~-rAerGIIyIDEIDKIarkSeN~SITRDVSGEG  191 (408)
T COG1219         128 --ADA--T--------TLT--EAG-YVGEDVENILLKLLQAADYDVE-RAERGIIYIDEIDKIARKSENPSITRDVSGEG  191 (408)
T ss_pred             --ccc--c--------chh--hcc-ccchhHHHHHHHHHHHcccCHH-HHhCCeEEEechhhhhccCCCCCcccccCchH
Confidence              000  0        011  111 2222455666665554433221 2345799999999873              35


Q ss_pred             HHHHHHHHHhhh-----cCc--------------eeEEEEecCCC-----------------------------------
Q 017844          146 AQHSLRRTMEKY-----SAS--------------CRLILCCNSSS-----------------------------------  171 (365)
Q Consensus       146 ~~~~Ll~~le~~-----~~~--------------~~~Il~t~~~~-----------------------------------  171 (365)
                      .|.+||+++|..     |..              ..+.|+|...-                                   
T Consensus       192 VQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l  271 (408)
T COG1219         192 VQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELL  271 (408)
T ss_pred             HHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHH
Confidence            789999999841     211              11333322110                                   


Q ss_pred             -----------cccHHHhccce-eEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc---CC
Q 017844          172 -----------KVTEAIRSRCL-NIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS---NR  223 (365)
Q Consensus       172 -----------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~~---~g  223 (365)
                                 .+.|.+.-|+- +..+.+++.+++..+|..           .+..+++  .++++++..||+.+   ..
T Consensus       272 ~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkT  351 (408)
T COG1219         272 KQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKT  351 (408)
T ss_pred             HhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhcc
Confidence                       14455666664 567899999999888753           1222444  57899999999853   34


Q ss_pred             CHHHHHHHHHHHHh
Q 017844          224 SLRRAILSFETCRV  237 (365)
Q Consensus       224 ~lr~ai~~l~~~~~  237 (365)
                      ..|-+.+.++.+.+
T Consensus       352 GARGLRsI~E~~ll  365 (408)
T COG1219         352 GARGLRSIIEELLL  365 (408)
T ss_pred             chhHHHHHHHHHHH
Confidence            55555566665443

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.94  E-value=1.3e-09  Score=95.68  Aligned_cols=157  Identities=13%  Similarity=0.186  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc--ceeccccccccc------
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLELTTLSSA------   92 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~------   92 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+...  ...+  ......      
T Consensus        15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i--~~~~q~~~~~~~   89 (230)
T TIGR03410        15 ILRGVSLEVPKGEV--TCVLGRNGVGKTTLLKTLMG-LLPVKSGSIRLDGEDITKLPPHERARAGI--AYVPQGREIFPR   89 (230)
T ss_pred             EecceeeEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCCHHHHHHhCe--EEeccCCcccCC
Confidence            34444444555555  99999999999999999999 55777787777764431000000  0000  000000      


Q ss_pred             ----cceecCCCCcCccchhHHHHHHHHHH------hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844           93 ----NHVELSPSDAGFQDRYVVQEVIKEMA------KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus        93 ----~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                          +.+.+.....+........+.++.+.      ......+|            ...+++++++||+ ..|+......
T Consensus        90 ~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~  169 (230)
T TIGR03410        90 LTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD  169 (230)
T ss_pred             CcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence                00000000000000011122222211      11111111            1247799999998 8899999999


Q ss_pred             HHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +.+.+.+...  +..+|++|++.+ ....+.+|+.+
T Consensus       170 l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~  204 (230)
T TIGR03410       170 IGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYV  204 (230)
T ss_pred             HHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEE
Confidence            9999987643  456777777655 33445566543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.93  E-value=7.8e-09  Score=86.26  Aligned_cols=119  Identities=17%  Similarity=0.201  Sum_probs=72.4

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhH
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV  109 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (365)
                      ..|..  +.|.||+|+||||+++++++ +..++.+.+.+++..+                      .+.++....... .
T Consensus        23 ~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i----------------------~~~~q~~~LSgG-q   76 (177)
T cd03222          23 KEGEV--IGIVGPNGTGKTTAVKILAG-QLIPNGDNDEWDGITP----------------------VYKPQYIDLSGG-E   76 (177)
T ss_pred             CCCCE--EEEECCCCChHHHHHHHHHc-CCCCCCcEEEECCEEE----------------------EEEcccCCCCHH-H
Confidence            34444  89999999999999999998 5577777777665332                      111111111111 1


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-c-eeEEEEecCCCcccHHHhcccee
Q 017844          110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-S-CRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       110 ~~~~l~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~-~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                       ++.+. ++..      ...+++++++||+ ..|+......+.+.+.+... . ..+|+++++.. ....+.+|+..
T Consensus        77 -~qrv~-lara------l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~  144 (177)
T cd03222          77 -LQRVA-IAAA------LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHV  144 (177)
T ss_pred             -HHHHH-HHHH------HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEE
Confidence             11111 1111      1235689999998 78999999988888877533 2 55666666654 33444555543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.93  E-value=3.6e-09  Score=92.22  Aligned_cols=55  Identities=15%  Similarity=0.239  Sum_probs=38.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|+..+
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l  210 (222)
T PRK10908        154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYRMLTL  210 (222)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            47789999998 88999999999999887643 4566667766543 33444554433

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.93  E-value=2.1e-09  Score=92.04  Aligned_cols=150  Identities=11%  Similarity=0.097  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh-cCCCCccceeccccceecCCCcceeccccccccccceecCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV-FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (365)
                      +.+.+.-.+..|..  +.|.||+|+||||+++++++.. ..+..+.+.+++..........         .....+.+.+
T Consensus        15 ~l~~is~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~---------~~~~~i~~v~   83 (200)
T cd03217          15 ILKGVNLTIKKGEV--HALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE---------RARLGIFLAF   83 (200)
T ss_pred             eeeccceEECCCcE--EEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHH---------HhhCcEEEee
Confidence            34444444444544  9999999999999999999954 3577788888775431000000         0001122333


Q ss_pred             CCcCccchhHHHHHHHHHHhcCC--------CCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecC
Q 017844          100 SDAGFQDRYVVQEVIKEMAKNRP--------IDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNS  169 (365)
Q Consensus       100 ~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~  169 (365)
                      ++........+.+.++.....-+        +......+++++++||+ ..|+......+.+.+.+... ...+|++|++
T Consensus        84 q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~  163 (200)
T cd03217          84 QYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY  163 (200)
T ss_pred             cChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            32222222223333321100000        00011346799999998 78999999999999887643 4567777776


Q ss_pred             CCcccHH-Hhccce
Q 017844          170 SSKVTEA-IRSRCL  182 (365)
Q Consensus       170 ~~~l~~~-l~sR~~  182 (365)
                      .+ .... +.+|+.
T Consensus       164 ~~-~~~~~~~d~i~  176 (200)
T cd03217         164 QR-LLDYIKPDRVH  176 (200)
T ss_pred             HH-HHHHhhCCEEE
Confidence            55 3343 456654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.93  E-value=3.9e-09  Score=92.04  Aligned_cols=158  Identities=14%  Similarity=0.186  Sum_probs=81.1

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC----Ccceeccccc------ccc
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLELTT------LSS   91 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~------~~~   91 (365)
                      ++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+.    .....+....      .+.
T Consensus        16 l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   92 (222)
T cd03224          16 LFGVSLTVPEGEI--VALLGRNGAGKTTLLKTIMG-LLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV   92 (222)
T ss_pred             eeeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence            3333334444544  99999999999999999998 557777888777654311000    0000000000      000


Q ss_pred             ccceecCCCCcC-ccchhHHHHHHHHHH------hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844           92 ANHVELSPSDAG-FQDRYVVQEVIKEMA------KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLR  151 (365)
Q Consensus        92 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll  151 (365)
                      .+.+.+.....+ ......+.+.++.+.      ......+|            ...+++++++||+ ..|+......+.
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  172 (222)
T cd03224          93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF  172 (222)
T ss_pred             HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence            000000000000 000111222232221      00010111            1247899999998 789999999999


Q ss_pred             HHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          152 RTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       152 ~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +.+.+... +..+|+++++.+ ....+.+|+..
T Consensus       173 ~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~  204 (222)
T cd03224         173 EAIRELRDEGVTILLVEQNAR-FALEIADRAYV  204 (222)
T ss_pred             HHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEE
Confidence            99987643 456666666544 33444555533

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.93  E-value=5.5e-09  Score=91.96  Aligned_cols=155  Identities=14%  Similarity=0.222  Sum_probs=82.2

Q ss_pred             HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccc---------
Q 017844           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN---------   93 (365)
Q Consensus        23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   93 (365)
                      +.+.-.+..|..  +.|.||+|+|||||++++++ +..+..|.+.+++......+......+  .......         
T Consensus        18 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~i~~~~~~~~~~i--~~~~q~~~~~~~~t~~   92 (236)
T TIGR03864        18 DDVSFTVRPGEF--VALLGPNGAGKSTLFSLLTR-LYVAQEGQISVAGHDLRRAPRAALARL--GVVFQQPTLDLDLSVR   92 (236)
T ss_pred             eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CcCCCceEEEECCEEcccCChhhhhhE--EEeCCCCCCcccCcHH
Confidence            333333444544  89999999999999999998 557777888777654311010000000  0000000         


Q ss_pred             -ceecCCCCcCccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844           94 -HVELSPSDAGFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLR  151 (365)
Q Consensus        94 -~~~~~~~~~~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll  151 (365)
                       .+.+.....+...   ...+.+.++.+.-     .....+|            ...+++++++||+ ..|+......+.
T Consensus        93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~  172 (236)
T TIGR03864        93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV  172 (236)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence             0000000000000   0011222222110     0000111            1247899999998 789999999999


Q ss_pred             HHHhhhc--CceeEEEEecCCCcccHHHhccceeE
Q 017844          152 RTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       152 ~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      +.|.+..  .+..+|++|++.+.+ .. .+|+..+
T Consensus       173 ~~l~~~~~~~~~tiii~sH~~~~~-~~-~d~i~~l  205 (236)
T TIGR03864       173 AHVRALCRDQGLSVLWATHLVDEI-EA-DDRLVVL  205 (236)
T ss_pred             HHHHHHHHhCCCEEEEEecChhhH-hh-CCEEEEE
Confidence            9998764  246678888777655 33 5665433

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.92  E-value=5.8e-09  Score=90.17  Aligned_cols=55  Identities=15%  Similarity=0.233  Sum_probs=40.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+...+..+.+.+++...+..+|+++++.+. ...+.+|+.++
T Consensus       147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~-~~~~~d~i~~l  202 (211)
T cd03264         147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVED-VESLCNQVAVL  202 (211)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHhCCEEEEE
Confidence            47899999998 789999999999999887656666666665543 34455565443

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.92  E-value=1.1e-09  Score=94.92  Aligned_cols=53  Identities=15%  Similarity=0.276  Sum_probs=38.5

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|++|++.+. ...+.+|+.
T Consensus       147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~-~~~~~d~i~  202 (213)
T cd03301         147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE-AMTMADRIA  202 (213)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEE
Confidence            47799999998 88999999999999987642  4667777776542 234444543

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.91  E-value=6.8e-09  Score=90.57  Aligned_cols=52  Identities=19%  Similarity=0.283  Sum_probs=38.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC  181 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~  181 (365)
                      .+++++++||+ ..|+......+.+.|.+... +..+|++|++.+ ....+.+|+
T Consensus       141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i  194 (223)
T TIGR03740       141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHI  194 (223)
T ss_pred             cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEE
Confidence            47799999998 88999999999999987643 455666666655 334455665

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.91  E-value=5e-09  Score=91.30  Aligned_cols=44  Identities=7%  Similarity=0.106  Sum_probs=35.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~  172 (365)
                      .+++++++||+ ..|+......+.+.|.+...  +..+|++|++.+.
T Consensus       158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~  204 (221)
T TIGR02211       158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL  204 (221)
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            47799999998 78999999999999987642  4567777877653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.91  E-value=2e-09  Score=94.36  Aligned_cols=158  Identities=18%  Similarity=0.354  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC-----cceeccc------ccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDLEL------TTL   89 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~------~~~   89 (365)
                      +...+.-.+++|+.  +-+.||+|+||||+.|+||+ |..++.+.+.+++..+ .+...     ..+-+.+      ..+
T Consensus        17 a~~di~l~i~~Ge~--vaLlGpSGaGKsTlLRiIAG-Le~p~~G~I~~~~~~l-~D~~~~~~~~R~VGfvFQ~YALF~Hm   92 (345)
T COG1118          17 ALDDISLDIKSGEL--VALLGPSGAGKSTLLRIIAG-LETPDAGRIRLNGRVL-FDVSNLAVRDRKVGFVFQHYALFPHM   92 (345)
T ss_pred             ccccceeeecCCcE--EEEECCCCCcHHHHHHHHhC-cCCCCCceEEECCEec-cchhccchhhcceeEEEechhhcccc
Confidence            33345555666766  89999999999999999999 8899999999998744 22111     1111000      000


Q ss_pred             ccccceecCC--C--Cc-CccchhHHHHHHHH-----HHhcCCCCCCC------------CCCceEEEEeCC-CCCCHHH
Q 017844           90 SSANHVELSP--S--DA-GFQDRYVVQEVIKE-----MAKNRPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (365)
Q Consensus        90 ~~~~~~~~~~--~--~~-~~~~~~~~~~~l~~-----~~~~~~~~~~~------------~~~~~vliiDE~-~~L~~~~  146 (365)
                      +..+.+.+..  .  .. ....+..+.+.++.     ++...|..+++            ...++|+++||+ ..|+...
T Consensus        93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~v  172 (345)
T COG1118          93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV  172 (345)
T ss_pred             hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHH
Confidence            1111111111  0  00 00111123333322     22223333332            236899999998 7788877


Q ss_pred             HHHHHHHHhhhc--CceeEEEEecCCCcccHHHhcccee
Q 017844          147 QHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       147 ~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ...|.+.|.+..  -++..+++|++.+... .+-+|+.+
T Consensus       173 r~~lr~wLr~~~~~~~~ttvfVTHD~eea~-~ladrvvv  210 (345)
T COG1118         173 RKELRRWLRKLHDRLGVTTVFVTHDQEEAL-ELADRVVV  210 (345)
T ss_pred             HHHHHHHHHHHHHhhCceEEEEeCCHHHHH-hhcceEEE
Confidence            777777776542  2577888888876432 34556543

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.91  E-value=5.2e-09  Score=91.64  Aligned_cols=44  Identities=18%  Similarity=0.197  Sum_probs=35.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~  172 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+.
T Consensus       163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  209 (228)
T PRK10584        163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL  209 (228)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            47899999998 78999999999999987632  4567778877653

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.91  E-value=4.5e-09  Score=92.33  Aligned_cols=45  Identities=7%  Similarity=0.165  Sum_probs=36.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKV  173 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l  173 (365)
                      .+++++++||+ ..|+......+.+.+.+..  .+..+|++|++.+.+
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~  209 (233)
T PRK11629        162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA  209 (233)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            47899999998 7899999999999998763  356778888876643

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=98.91  E-value=5.4e-08  Score=86.94  Aligned_cols=199  Identities=15%  Similarity=0.175  Sum_probs=118.8

Q ss_pred             CCCCccccCHHHHHHHHHHHHcCC-C-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTEQD-C-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~~~-~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      ..|+.+++.....+.+....++-. . .+++|.|..||||-.+|++.-..--......+-++|...   |.         
T Consensus       201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l---Pe---------  268 (511)
T COG3283         201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL---PE---------  268 (511)
T ss_pred             cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC---ch---------
Confidence            358888887766666555444321 1 229999999999999998864321111111122222111   00         


Q ss_pred             ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh----------
Q 017844           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----------  157 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~----------  157 (365)
                      .......+.+.+.+.+..      .+++            ..+..-+++||+..|++..|..|++++.+.          
T Consensus       269 ~~aEsElFG~apg~~gk~------GffE------------~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~E  330 (511)
T COG3283         269 DAAESELFGHAPGDEGKK------GFFE------------QANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHE  330 (511)
T ss_pred             hHhHHHHhcCCCCCCCcc------chhh------------hccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcce
Confidence            000011122222211110      0110            122357999999999999999999999642          


Q ss_pred             -cCceeEEEEecCCC-------cccHHHhccceeEEecCCCHHH--------HHHHHHHHHHHcCC---CCCHHHHHHHH
Q 017844          158 -SASCRLILCCNSSS-------KVTEAIRSRCLNIRINSPTEEQ--------IVKVLEFIAKKEGL---QLPSGFATRLA  218 (365)
Q Consensus       158 -~~~~~~Il~t~~~~-------~l~~~l~sR~~~i~~~~~~~~~--------~~~iL~~~~~~~~~---~i~~~~~~~i~  218 (365)
                       ..++++|++|..+-       ++-..+.-|..++.+.-|+..+        ..-++.+++.+.|+   +++++.+.++.
T Consensus       331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~  410 (511)
T COG3283         331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLT  410 (511)
T ss_pred             EEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence             24577887776553       3556677777666655554333        23345666777666   57889999988


Q ss_pred             H-HcCCCHHHHHHHHHHHHhc
Q 017844          219 E-KSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       219 ~-~~~g~lr~ai~~l~~~~~~  238 (365)
                      + .+.||+|+.-|.+=+++..
T Consensus       411 ~y~WpGNVRqL~N~iyRA~s~  431 (511)
T COG3283         411 RYAWPGNVRQLKNAIYRALTL  431 (511)
T ss_pred             HcCCCccHHHHHHHHHHHHHH
Confidence            8 5899999999998765543

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.90  E-value=1.3e-09  Score=93.42  Aligned_cols=150  Identities=19%  Similarity=0.248  Sum_probs=85.9

Q ss_pred             cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc-----ccccc
Q 017844           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL-----TTLSS   91 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~   91 (365)
                      |...+++.+.-.+..|.+  +.+.||+||||||+.+.+|+ +..++.+.+.+++... ..|.....-+.+     ...+.
T Consensus        14 ~~~~vl~~i~L~v~~GEf--vsilGpSGcGKSTLLriiAG-L~~p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv   89 (248)
T COG1116          14 GGVEVLEDINLSVEKGEF--VAILGPSGCGKSTLLRLIAG-LEKPTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTV   89 (248)
T ss_pred             CceEEeccceeEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCccc-CCCCCCEEEEeccCcccchhhH
Confidence            334555666666677777  89999999999999999999 7888989888888655 333222111100     11111


Q ss_pred             ccceecCCCCcCccc---hhHHHHHHHHH-----HhcCCCCCCC------------CCCceEEEEeCC-CCCCHH----H
Q 017844           92 ANHVELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTKG------------KRGFKVLVLNEV-DKLSRE----A  146 (365)
Q Consensus        92 ~~~~~~~~~~~~~~~---~~~~~~~l~~~-----~~~~~~~~~~------------~~~~~vliiDE~-~~L~~~----~  146 (365)
                      .+.+.+.....+...   ...+.+.++.+     ....|..+|+            ..+++++++||+ ..|+.-    .
T Consensus        90 ~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~l  169 (248)
T COG1116          90 LDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL  169 (248)
T ss_pred             HhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHH
Confidence            122222222111111   11233333322     1112222221            247899999997 667654    4


Q ss_pred             HHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          147 QHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       147 ~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      ++.|+++.++.  +..++++|++.+.
T Consensus       170 q~~l~~lw~~~--~~TvllVTHdi~E  193 (248)
T COG1116         170 QDELLRLWEET--RKTVLLVTHDVDE  193 (248)
T ss_pred             HHHHHHHHHhh--CCEEEEEeCCHHH
Confidence            55566666654  4678899988763

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.90  E-value=4.3e-08  Score=78.31  Aligned_cols=28  Identities=54%  Similarity=0.827  Sum_probs=24.0

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      .+++|+||+|+||||+++.+++.+....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~   30 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPG   30 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence            3599999999999999999999775543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.90  E-value=4.9e-09  Score=90.81  Aligned_cols=55  Identities=13%  Similarity=0.222  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|+.++
T Consensus       152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~-~~~~~d~i~~l  208 (213)
T cd03262         152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF-AREVADRVIFM  208 (213)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            47899999998 78999999999999987643 4566777766543 24444554433

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.90  E-value=1.2e-09  Score=92.28  Aligned_cols=158  Identities=15%  Similarity=0.181  Sum_probs=96.9

Q ss_pred             CccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc
Q 017844           13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA   92 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (365)
                      +--+|.-++++.+.-.+..|..  +.+.|+||+||||++++|++ +..+..+.+.+++.++...|.....         .
T Consensus        10 ~~~YG~~~~L~gvsl~v~~Gei--v~llG~NGaGKTTlLkti~G-l~~~~~G~I~~~G~dit~~p~~~r~---------r   77 (237)
T COG0410          10 SAGYGKIQALRGVSLEVERGEI--VALLGRNGAGKTTLLKTIMG-LVRPRSGRIIFDGEDITGLPPHERA---------R   77 (237)
T ss_pred             eecccceeEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeeEEECCeecCCCCHHHHH---------h
Confidence            3345666666666666777777  89999999999999999999 5666778888888766322222111         1


Q ss_pred             cceecCCCCcCccchhHHHHHHHHHHhc-----------------CCC----------CCCC------------CCCceE
Q 017844           93 NHVELSPSDAGFQDRYVVQEVIKEMAKN-----------------RPI----------DTKG------------KRGFKV  133 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~----------~~~~------------~~~~~v  133 (365)
                      .-+.++|+....+...+++|++......                 .|.          .+|+            ..++++
T Consensus        78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl  157 (237)
T COG0410          78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL  157 (237)
T ss_pred             CCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE
Confidence            1233444444444444444443321100                 000          1121            247899


Q ss_pred             EEEeCC-CCCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCcccHHHhccce
Q 017844          134 LVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       134 liiDE~-~~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      +++||+ ..|.+.....+.+.+.+.... ...|+...+.-+.--.+-+|..
T Consensus       158 LLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~y  208 (237)
T COG0410         158 LLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY  208 (237)
T ss_pred             EEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEE
Confidence            999999 789999999999999887643 3344444444444445666754

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.89  E-value=5.8e-09  Score=96.28  Aligned_cols=151  Identities=16%  Similarity=0.194  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||+++|++ +..++.+.+.+++.++ ........      ......+.+.++
T Consensus        20 ~L~~vsl~i~~Gei--~gIiG~sGaGKSTLlr~I~g-l~~p~~G~I~i~G~~i-~~~~~~~l------~~~r~~Ig~v~Q   89 (343)
T TIGR02314        20 ALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNL-LERPTSGSVIVDGQDL-TTLSNSEL------TKARRQIGMIFQ   89 (343)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEC-CcCCHHHH------HHHhcCEEEEEC
Confidence            34444445555655  89999999999999999998 6788889888888654 11000000      000001111111


Q ss_pred             CcCccc------------------hh----HHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-C
Q 017844          101 DAGFQD------------------RY----VVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-D  140 (365)
Q Consensus       101 ~~~~~~------------------~~----~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~  140 (365)
                      +.....                  ..    .+.+.++.+.-     ..+..+|            ...+++++++||+ .
T Consensus        90 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts  169 (343)
T TIGR02314        90 HFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS  169 (343)
T ss_pred             CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence            111110                  00    11122222110     0111111            1247899999998 8


Q ss_pred             CCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          141 KLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       141 ~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .|++.....+++.|.+...  +..+|++|++.+ ....+.+|+.
T Consensus       170 ~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~  212 (343)
T TIGR02314       170 ALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVA  212 (343)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence            8999999999999987643  466777777654 3345556654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.89  E-value=1.3e-08  Score=84.49  Aligned_cols=126  Identities=21%  Similarity=0.264  Sum_probs=73.8

Q ss_pred             HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc
Q 017844           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (365)
Q Consensus        23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (365)
                      +.+.-.+..|..  +.+.||+|+||||+++++++ +..+..+.+.+++...                     +.+.+++.
T Consensus        18 ~~i~l~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~~~~---------------------i~~~~q~~   73 (166)
T cd03223          18 KDLSFEIKPGDR--LLITGPSGTGKSSLFRALAG-LWPWGSGRIGMPEGED---------------------LLFLPQRP   73 (166)
T ss_pred             ecCeEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCCce---------------------EEEECCCC
Confidence            333333444544  89999999999999999999 4566667666554110                     11111110


Q ss_pred             CccchhHHHHHHHH-------------HHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEec
Q 017844          103 GFQDRYVVQEVIKE-------------MAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCN  168 (365)
Q Consensus       103 ~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~  168 (365)
                      ... ..++.+.+..             ++-..    ....+++++++||+ ..|+......+.+.+.+.  ...+|++|+
T Consensus        74 ~~~-~~tv~~nl~~~~~~~LS~G~~~rv~lar----al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh  146 (166)
T cd03223          74 YLP-LGTLREQLIYPWDDVLSGGEQQRLAFAR----LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGH  146 (166)
T ss_pred             ccc-cccHHHHhhccCCCCCCHHHHHHHHHHH----HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeC
Confidence            000 0011122110             00000    01346789999998 789999999999999876  456778887


Q ss_pred             CCCcccHHHhccc
Q 017844          169 SSSKVTEAIRSRC  181 (365)
Q Consensus       169 ~~~~l~~~l~sR~  181 (365)
                      +.+ .. .+.+|+
T Consensus       147 ~~~-~~-~~~d~i  157 (166)
T cd03223         147 RPS-LW-KFHDRV  157 (166)
T ss_pred             Chh-HH-hhCCEE
Confidence            764 32 344544

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PF13173 AAA_14: AAA domain

Probab=98.89  E-value=1.4e-08  Score=80.47  Aligned_cols=119  Identities=20%  Similarity=0.358  Sum_probs=71.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (365)
                      ++++||+|+||||+++.+++.+. +....++++.                             .+...... ...+..+.
T Consensus         5 ~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~-----------------------------~~~~~~~~-~~~~~~~~   53 (128)
T PF13173_consen    5 IILTGPRGVGKTTLLKQLAKDLL-PPENILYINF-----------------------------DDPRDRRL-ADPDLLEY   53 (128)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc-ccccceeecc-----------------------------CCHHHHHH-hhhhhHHH
Confidence            89999999999999999998764 1111122211                             11110000 00001111


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc----ccHHHhccceeEEecCCCHH
Q 017844          117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK----VTEAIRSRCLNIRINSPTEE  192 (365)
Q Consensus       117 ~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~----l~~~l~sR~~~i~~~~~~~~  192 (365)
                      +....      ..+..+++|||++.+. +....+..+.+.. .+..+|++++....    ....+..|...+++.|++.+
T Consensus        54 ~~~~~------~~~~~~i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~  125 (128)
T PF13173_consen   54 FLELI------KPGKKYIFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFR  125 (128)
T ss_pred             HHHhh------ccCCcEEEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHH
Confidence            22110      1245799999999875 4445555555543 56788888886653    34566778889999999987


Q ss_pred             HH
Q 017844          193 QI  194 (365)
Q Consensus       193 ~~  194 (365)
                      |.
T Consensus       126 E~  127 (128)
T PF13173_consen  126 EF  127 (128)
T ss_pred             Hh
Confidence            64

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=5.6e-09  Score=96.82  Aligned_cols=151  Identities=15%  Similarity=0.188  Sum_probs=83.0

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (365)
                      ++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+.......       ...+.+.++.
T Consensus        21 l~~vsl~i~~Gei--~~iiG~nGsGKSTLlk~L~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~-------~~~ig~v~q~   90 (343)
T PRK11153         21 LNNVSLHIPAGEI--FGVIGASGAGKSTLIRCINL-LERPTSGRVLVDGQDLTALSEKELRKA-------RRQIGMIFQH   90 (343)
T ss_pred             EEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCcCCHHHHHHH-------hcCEEEEeCC
Confidence            3333334445554  89999999999999999998 567788888887754311000000000       0011111111


Q ss_pred             cCccc------------------h----hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CC
Q 017844          102 AGFQD------------------R----YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DK  141 (365)
Q Consensus       102 ~~~~~------------------~----~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~  141 (365)
                      .....                  .    ..+.+.++.+.     ...+..+|            ...+++++++||+ ..
T Consensus        91 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~  170 (343)
T PRK11153         91 FNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSA  170 (343)
T ss_pred             CccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            11000                  0    01112222211     00111111            1247899999998 78


Q ss_pred             CCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          142 LSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       142 L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      |++.....+.+.|.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       171 LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~-i~~~~d~v~~  213 (343)
T PRK11153        171 LDPATTRSILELLKDINRELGLTIVLITHEMDV-VKRICDRVAV  213 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            999999999999987643  4567777776653 3455566543

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.89  E-value=4.3e-09  Score=91.02  Aligned_cols=54  Identities=17%  Similarity=0.248  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.|.+... +..+|++|++.+ ....+.+|+..
T Consensus       151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~  206 (211)
T cd03225         151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIV  206 (211)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            47899999998 88999999999999987643 456777777654 33444455443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=8.2e-09  Score=91.86  Aligned_cols=158  Identities=13%  Similarity=0.217  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc------cccccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSANH   94 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~   94 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..+..+.+.+++... ..+.. ...+....      .+..+.
T Consensus        16 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~-~~~~~-~~~~v~q~~~~~~~~tv~e~   90 (255)
T PRK11248         16 ALEDINLTLESGEL--LVVLGPSGCGKTTLLNLIAG-FVPYQHGSITLDGKPV-EGPGA-ERGVVFQNEGLLPWRNVQDN   90 (255)
T ss_pred             eEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEC-CCCCC-cEEEEeCCCccCCCCcHHHH
Confidence            33444444445555  99999999999999999999 5677788887776543 11100 00000000      000000


Q ss_pred             eecCCCCcCccc---hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHH
Q 017844           95 VELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRT  153 (365)
Q Consensus        95 ~~~~~~~~~~~~---~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~  153 (365)
                      +.+.....+...   ...+.+.++.+.     ...+..+|            ...+++++++||+ ..|+......+.+.
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~  170 (255)
T PRK11248         91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL  170 (255)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            000000001000   011222222221     01111111            1247899999998 78999999999999


Q ss_pred             Hhhh-c-CceeEEEEecCCCcccHHHhccceeE
Q 017844          154 MEKY-S-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       154 le~~-~-~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      |.+. . .+..+|++|++.+. ...+.+|..++
T Consensus       171 L~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l  202 (255)
T PRK11248        171 LLKLWQETGKQVLLITHDIEE-AVFMATELVLL  202 (255)
T ss_pred             HHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            9875 2 24567777776553 33444554433

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.89  E-value=2.7e-09  Score=89.24  Aligned_cols=102  Identities=21%  Similarity=0.334  Sum_probs=57.9

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHH
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVI  114 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  114 (365)
                      .+++|+||+|+|||++|.++++++........++....+                     +.........   ....+.+
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L---------------------~~~l~~~~~~---~~~~~~~  103 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL---------------------LDELKQSRSD---GSYEELL  103 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH---------------------HHHHHCCHCC---TTHCHHH
T ss_pred             eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce---------------------eccccccccc---cchhhhc
Confidence            459999999999999999999987553322222221111                     1100000000   0122334


Q ss_pred             HHHHhcCCCCCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          115 KEMAKNRPIDTKGKRGFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~vliiDE~~~--L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      +.+.           +.+++||||+..  .+....+.|+++++....+...|++||...
T Consensus       104 ~~l~-----------~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~  151 (178)
T PF01695_consen  104 KRLK-----------RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLSP  151 (178)
T ss_dssp             HHHH-----------TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-H
T ss_pred             Cccc-----------cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCch
Confidence            4433           347999999854  456667778888887544557888888553

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.88  E-value=1.6e-09  Score=100.50  Aligned_cols=149  Identities=14%  Similarity=0.213  Sum_probs=83.5

Q ss_pred             HHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcC
Q 017844           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG  103 (365)
Q Consensus        24 ~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (365)
                      .+...+..|..  +.|.||+|+||||++++|++ +..+..+.+.+++..+...+.......      ....+.+..+...
T Consensus        11 ~vs~~i~~Gei--~~l~G~sGsGKSTLLr~L~G-l~~p~~G~I~i~G~~i~~~~~~~~~~~------rr~~i~~v~Q~~~   81 (363)
T TIGR01186        11 DADLAIAKGEI--FVIMGLSGSGKSTTVRMLNR-LIEPTAGQIFIDGENIMKQSPVELREV------RRKKIGMVFQQFA   81 (363)
T ss_pred             eeEEEEcCCCE--EEEECCCCChHHHHHHHHhC-CCCCCceEEEECCEECCcCCHHHHHHH------HhCcEEEEECCCc
Confidence            33334445555  99999999999999999999 667888988888865511000000000      0011222222211


Q ss_pred             ccchhHHH------------------HHHHHHHhcCCC---------CCC------------CCCCceEEEEeCC-CCCC
Q 017844          104 FQDRYVVQ------------------EVIKEMAKNRPI---------DTK------------GKRGFKVLVLNEV-DKLS  143 (365)
Q Consensus       104 ~~~~~~~~------------------~~l~~~~~~~~~---------~~~------------~~~~~~vliiDE~-~~L~  143 (365)
                      .....++.                  +...++.....+         .+|            ...+++++++||+ ..|+
T Consensus        82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD  161 (363)
T TIGR01186        82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD  161 (363)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            11111111                  111111111111         111            1347899999998 8899


Q ss_pred             HHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          144 REAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       144 ~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      +.....+.+.+.+...  +..+|++|++.+.. ..+.+|+.
T Consensus       162 ~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea-~~~~drI~  201 (363)
T TIGR01186       162 PLIRDSMQDELKKLQATLQKTIVFITHDLDEA-IRIGDRIV  201 (363)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence            9999988888876532  46688888876643 34445653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.88  E-value=2.9e-09  Score=94.15  Aligned_cols=50  Identities=22%  Similarity=0.460  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~   72 (365)
                      .+++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..
T Consensus        16 ~il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~   65 (243)
T TIGR02315        16 QALKNINLNINPGEF--VAIIGPSGAGKSTLLRCINR-LVEPSSGSILLEGTD   65 (243)
T ss_pred             ceeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CcCCCccEEEECCEE
Confidence            344555445555555  99999999999999999998 556777888777654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.87  E-value=1.6e-09  Score=93.39  Aligned_cols=43  Identities=7%  Similarity=0.180  Sum_probs=34.7

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCC
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~  171 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|++|++..
T Consensus       151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~  195 (206)
T TIGR03608       151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE  195 (206)
T ss_pred             cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            47899999998 88999999999999987643 456777777764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.87  E-value=1.5e-08  Score=86.50  Aligned_cols=129  Identities=14%  Similarity=0.188  Sum_probs=70.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc----------cceecCCCCcCccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA----------NHVELSPSDAGFQD  106 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  106 (365)
                      +.|.||+|+||||+++++++ +..+..+.+.+++.... ......  +  ......          +.+.+.....+  .
T Consensus        29 ~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~i~-~~~~~~--~--~~~~~~~~~~~~~tv~~~l~~~~~~~~--~  100 (195)
T PRK13541         29 TYIKGANGCGKSSLLRMIAG-IMQPSSGNIYYKNCNIN-NIAKPY--C--TYIGHNLGLKLEMTVFENLKFWSEIYN--S  100 (195)
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCcccC-hhhhhh--E--EeccCCcCCCccCCHHHHHHHHHHhcc--c
Confidence            89999999999999999999 56777888887775431 000000  0  000000          00000000000  0


Q ss_pred             hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhh-cCceeEEEEe
Q 017844          107 RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCC  167 (365)
Q Consensus       107 ~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~-~~~~~~Il~t  167 (365)
                      ...+.+.++.+.     ......+|            ...+++++++||+ ..+++.....+.+.+.+. ..+..+|+++
T Consensus       101 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s  180 (195)
T PRK13541        101 AETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSS  180 (195)
T ss_pred             HHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            001112211110     00000111            1247799999998 789999999998888643 3346677777


Q ss_pred             cCCCcc
Q 017844          168 NSSSKV  173 (365)
Q Consensus       168 ~~~~~l  173 (365)
                      ++...+
T Consensus       181 h~~~~i  186 (195)
T PRK13541        181 HLESSI  186 (195)
T ss_pred             CCcccc
Confidence            776643

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.87  E-value=3.5e-09  Score=93.17  Aligned_cols=54  Identities=24%  Similarity=0.312  Sum_probs=39.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.|.+...  +..+|++|++.+ ....+.+++..
T Consensus       170 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~  226 (236)
T cd03267         170 HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLV  226 (236)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEE
Confidence            47899999998 88999999999999987643  456677776655 33444455443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.87  E-value=6.8e-09  Score=91.37  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=39.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+.. .+..+|++|++.+. ...+.+|+.+
T Consensus       160 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~  215 (236)
T cd03219         160 TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTV  215 (236)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEE
Confidence            37799999998 7899999999999998764 34567777776553 3445566543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=98.87  E-value=1.7e-07  Score=90.41  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=75.6

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------CceeEEEEecCCC-------cccHHHhcccee--EEecCC
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------ASCRLILCCNSSS-------KVTEAIRSRCLN--IRINSP  189 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~~~~~Il~t~~~~-------~l~~~l~sR~~~--i~~~~~  189 (365)
                      ...+++|||++.|+...|..|++.+++..           .++++|++|+...       .+.+.+..|+..  +.++|+
T Consensus       233 ~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppL  312 (441)
T PRK10365        233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSL  312 (441)
T ss_pred             CCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCCh
Confidence            34689999999999999999999998632           2456777776543       244555556544  445554


Q ss_pred             CH--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 017844          190 TE--EQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ  238 (365)
Q Consensus       190 ~~--~~~~~iL~~~~~----~~~---~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~  238 (365)
                      ..  +++..+....+.    +.+   ..++++++..+.... .||+|++.+.++.++..
T Consensus       313 reR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~  371 (441)
T PRK10365        313 RQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL  371 (441)
T ss_pred             hhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence            32  244444444333    223   358999999999965 99999999999987764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.86  E-value=1.1e-08  Score=87.47  Aligned_cols=142  Identities=15%  Similarity=0.274  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.++.|.+  +.+.||+|||||||...++. +..|+.+.+.+++.+. .....+..     ..-...++.+..+
T Consensus        20 ~L~~v~l~i~~Ge~--vaI~GpSGSGKSTLLniig~-ld~pt~G~v~i~g~d~-~~l~~~~~-----~~~R~~~iGfvFQ   90 (226)
T COG1136          20 ALKDVNLEIEAGEF--VAIVGPSGSGKSTLLNLLGG-LDKPTSGEVLINGKDL-TKLSEKEL-----AKLRRKKIGFVFQ   90 (226)
T ss_pred             ecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEc-CcCCHHHH-----HHHHHHhEEEECc
Confidence            34444445566766  99999999999999999987 7788888888888554 11110000     0000122333333


Q ss_pred             CcCccchhHHHHHHH------------------HHHh----------cCCCCCCC------------CCCceEEEEeCC-
Q 017844          101 DAGFQDRYVVQEVIK------------------EMAK----------NRPIDTKG------------KRGFKVLVLNEV-  139 (365)
Q Consensus       101 ~~~~~~~~~~~~~l~------------------~~~~----------~~~~~~~~------------~~~~~vliiDE~-  139 (365)
                      .+..-+..++.+.+.                  .+..          ..|..+|+            ..++++++-||+ 
T Consensus        91 ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPT  170 (226)
T COG1136          91 NFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPT  170 (226)
T ss_pred             cCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCcc
Confidence            322222222222211                  1111          11212222            247899999999 


Q ss_pred             CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCC
Q 017844          140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSS  171 (365)
Q Consensus       140 ~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~  171 (365)
                      ..|+.+....+++++.+...  +..+|++|+++.
T Consensus       171 gnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~  204 (226)
T COG1136         171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE  204 (226)
T ss_pred             ccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            88999988888888887632  457777777644

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.86  E-value=2.1e-09  Score=92.16  Aligned_cols=154  Identities=19%  Similarity=0.211  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc---------
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS---------   91 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------   91 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++.............+  .....         
T Consensus        15 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~i--~~~~q~~~~~~~~t   89 (201)
T cd03231          15 LFSGLSFTLAAGEA--LQVTGPNGSGKTTLLRILAG-LSPPLAGRVLLNGGPLDFQRDSIARGL--LYLGHAPGIKTTLS   89 (201)
T ss_pred             eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEecccccHHhhhhe--EEeccccccCCCcC
Confidence            34444444555555  99999999999999999999 557777877777644310000000000  00000         


Q ss_pred             -ccceecCCCCcCccchhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844           92 -ANHVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus        92 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                       .+.+.+..   .......+.+.++.+.-     .....+|            ...+++++++||+ ..|+......+.+
T Consensus        90 v~e~l~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~  166 (201)
T cd03231          90 VLENLRFWH---ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE  166 (201)
T ss_pred             HHHHHHhhc---ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence             00000000   00011112222222110     0000111            1247799999998 8899999999999


Q ss_pred             HHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          153 TMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       153 ~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+.+... ...+|++|++...+.. .-+|+..
T Consensus       167 ~l~~~~~~g~tiii~sH~~~~~~~-~~~~~~~  197 (201)
T cd03231         167 AMAGHCARGGMVVLTTHQDLGLSE-AGARELD  197 (201)
T ss_pred             HHHHHHhCCCEEEEEecCchhhhh-ccceeEe
Confidence            9976533 4567777777665544 4455543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.86  E-value=5.4e-08  Score=88.23  Aligned_cols=195  Identities=18%  Similarity=0.184  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhc--CCCCccceeccccceecCCCcceecccccccc-cc
Q 017844           19 QDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVF--GPGAEKVKVENKTWKIDAGSRNIDLELTTLSS-AN   93 (365)
Q Consensus        19 ~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~   93 (365)
                      +..++.+...+..  .....+.|+|++|+|||++|+.+++...  ......+.++....     .....+    ... ..
T Consensus         2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~----~~~i~~   72 (287)
T PF00931_consen    2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQL----LEQILR   72 (287)
T ss_dssp             HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHH----HHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----cccccc----cccccc
Confidence            4556777777766  3333399999999999999999987632  21111111111000     000000    000 00


Q ss_pred             ceecCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844           94 HVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus        94 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.....+. ...+.....+.+....         ..++-++|+|+++.  ......+...+.....++++|+||.+.. 
T Consensus        73 ~l~~~~~~~~~~~~~~~~~~~l~~~L---------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~kilvTTR~~~-  140 (287)
T PF00931_consen   73 QLGEPDSSISDPKDIEELQDQLRELL---------KDKRCLLVLDDVWD--EEDLEELREPLPSFSSGSKILVTTRDRS-  140 (287)
T ss_dssp             HHTCC-STSSCCSSHHHHHHHHHHHH---------CCTSEEEEEEEE-S--HHHH-------HCHHSS-EEEEEESCGG-
T ss_pred             cccccccccccccccccccccchhhh---------ccccceeeeeeecc--cccccccccccccccccccccccccccc-
Confidence            000110011 1111111222222221         23357999999873  3344444555544455778888887643 


Q ss_pred             ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844          173 VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEG---LQLPSGFATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       173 l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~---~~i~~~~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      +..........+++++++.++..+.+.+.+....   ..-.++....|++.++|.+-.+.-+...
T Consensus       141 v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~  205 (287)
T PF00931_consen  141 VAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASY  205 (287)
T ss_dssp             GGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3333333367899999999999999998875444   1222567789999998866544443333

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.86  E-value=7.1e-09  Score=89.65  Aligned_cols=153  Identities=18%  Similarity=0.271  Sum_probs=80.2

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccceecCCC
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANHVELSPS  100 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~  100 (365)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+ ......+....      .+..+.+.+...
T Consensus        20 ~i~~Ge~--~~l~G~nGsGKSTLl~~l~g-l~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~   96 (211)
T cd03298          20 TFAQGEI--TAIVGPSGSGKSTLLNLIAG-FETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLS   96 (211)
T ss_pred             EEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccc
Confidence            3344444  99999999999999999998 55777788877775431100 00000000000      000011111000


Q ss_pred             C-cCc--cchhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC
Q 017844          101 D-AGF--QDRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus       101 ~-~~~--~~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~  159 (365)
                      . ...  .....+.+.++.+.     ...+..+|            ...+++++++||+ ..|+......+.+.|.+...
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~  176 (211)
T cd03298          97 PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA  176 (211)
T ss_pred             cccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            0 000  00111222222211     11111111            1247899999998 78999999999999987642


Q ss_pred             --ceeEEEEecCCCcccHHHhccceeE
Q 017844          160 --SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       160 --~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                        ...+|++|++.+. ...+.+|+..+
T Consensus       177 ~~~~tii~~sH~~~~-~~~~~d~i~~l  202 (211)
T cd03298         177 ETKMTVLMVTHQPED-AKRLAQRVVFL  202 (211)
T ss_pred             hcCCEEEEEecCHHH-HHhhhCEEEEE
Confidence              4566777766553 33445565443

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.86  E-value=6.1e-09  Score=91.06  Aligned_cols=56  Identities=21%  Similarity=0.180  Sum_probs=40.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+..++..+.+.+.+... ...+|+++++.......+.+|+.++
T Consensus       160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l  217 (226)
T cd03234         160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL  217 (226)
T ss_pred             hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence            36799999998 78999999999999987643 4567777777643334455555443

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.85  E-value=6.2e-09  Score=88.73  Aligned_cols=137  Identities=20%  Similarity=0.303  Sum_probs=75.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec--cc-cccccccceecCCCCcCccchhHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL--EL-TTLSSANHVELSPSDAGFQDRYVVQEV  113 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (365)
                      +.|.|+||+||||+.+.|++ +..|+.+.+.+++...   |   ..+.  .+ ...+..+.+.+...-.+.. +..+++.
T Consensus        56 vGiiG~NGaGKSTLlkliaG-i~~Pt~G~v~v~G~v~---~---li~lg~Gf~pelTGreNi~l~~~~~G~~-~~ei~~~  127 (249)
T COG1134          56 VGIIGHNGAGKSTLLKLIAG-IYKPTSGKVKVTGKVA---P---LIELGAGFDPELTGRENIYLRGLILGLT-RKEIDEK  127 (249)
T ss_pred             EEEECCCCCcHHHHHHHHhC-ccCCCCceEEEcceEe---h---hhhcccCCCcccchHHHHHHHHHHhCcc-HHHHHHH
Confidence            78999999999999999999 7789999888877532   0   0000  00 0000011111111111111 1112222


Q ss_pred             HHHHHhcC--------CC-------------CCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhh-cCceeEEEEecCC
Q 017844          114 IKEMAKNR--------PI-------------DTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSS  170 (365)
Q Consensus       114 l~~~~~~~--------~~-------------~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~-~~~~~~Il~t~~~  170 (365)
                      .+++.+..        |+             +.+..-+++|++|||+ ..-+...+..-.+.+++. ..+..+|+++++.
T Consensus       128 ~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~  207 (249)
T COG1134         128 VDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL  207 (249)
T ss_pred             HHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence            22222211        11             2234457899999998 555677777777777776 5566677777765


Q ss_pred             CcccHHHhccce
Q 017844          171 SKVTEAIRSRCL  182 (365)
Q Consensus       171 ~~l~~~l~sR~~  182 (365)
                      . ....+.+|+.
T Consensus       208 ~-~I~~~Cd~~i  218 (249)
T COG1134         208 G-AIKQYCDRAI  218 (249)
T ss_pred             H-HHHHhcCeeE
Confidence            5 3344555553

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=2.9e-09  Score=94.16  Aligned_cols=53  Identities=13%  Similarity=0.194  Sum_probs=38.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|+++++... ...+.+|+.
T Consensus       158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~  212 (242)
T PRK11124        158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV-ARKTASRVV  212 (242)
T ss_pred             cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEE
Confidence            47899999998 78999999999999987643 4556666666553 344556653

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=5.9e-09  Score=85.06  Aligned_cols=132  Identities=18%  Similarity=0.221  Sum_probs=77.6

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (365)
                      .+..|..  +.++||+|+||||+.|.+|+ +..|..+.+++++......+......+           -+..-..+....
T Consensus        24 ~l~~Ge~--~~i~G~NG~GKTtLLRilaG-Ll~p~~G~v~~~~~~i~~~~~~~~~~l-----------~yLGH~~giK~e   89 (209)
T COG4133          24 TLNAGEA--LQITGPNGAGKTTLLRILAG-LLRPDAGEVYWQGEPIQNVRESYHQAL-----------LYLGHQPGIKTE   89 (209)
T ss_pred             EEcCCCE--EEEECCCCCcHHHHHHHHHc-ccCCCCCeEEecCCCCccchhhHHHHH-----------HHhhccccccch
Confidence            3344544  89999999999999999999 778888988888755411111000111           111111222333


Q ss_pred             hHHHHHHHHHHhcCC---------------C---------CCCC------------CCCceEEEEeCC-CCCCHHHHHHH
Q 017844          108 YVVQEVIKEMAKNRP---------------I---------DTKG------------KRGFKVLVLNEV-DKLSREAQHSL  150 (365)
Q Consensus       108 ~~~~~~l~~~~~~~~---------------~---------~~~~------------~~~~~vliiDE~-~~L~~~~~~~L  150 (365)
                      .++.|.++.+.....               +         .+|.            -....+.|+||+ -.++++....|
T Consensus        90 LTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l  169 (209)
T COG4133          90 LTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL  169 (209)
T ss_pred             hhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH
Confidence            334444433322111               0         0110            135679999998 78999999889


Q ss_pred             HHHHhhhcCceeEEE-EecCCCcc
Q 017844          151 RRTMEKYSASCRLIL-CCNSSSKV  173 (365)
Q Consensus       151 l~~le~~~~~~~~Il-~t~~~~~l  173 (365)
                      -..|.......-+|+ +|+.+-.+
T Consensus       170 ~~l~~~H~~~GGiVllttHq~l~~  193 (209)
T COG4133         170 TALMAAHAAQGGIVLLTTHQPLPI  193 (209)
T ss_pred             HHHHHHHhcCCCEEEEecCCccCC
Confidence            899988755544555 44444444

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.85  E-value=1.8e-08  Score=88.99  Aligned_cols=142  Identities=15%  Similarity=0.214  Sum_probs=75.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (365)
                      +.|.||+|+||||+++++++ +..+..+.+.+++..+...|.......   ..+..+.+........ .......+.++.
T Consensus        28 ~~i~G~NGsGKSTLlk~L~G-~~~p~~G~i~~~g~~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~-~~~~~~~~~l~~  102 (246)
T cd03237          28 IGILGPNGIGKTTFIKMLAG-VLKPDEGDIEIELDTVSYKPQYIKADY---EGTVRDLLSSITKDFY-THPYFKTEIAKP  102 (246)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCcCCCCeEEECCceEEEecccccCCC---CCCHHHHHHHHhhhcc-ccHHHHHHHHHH
Confidence            89999999999999999999 556777777666533312221110000   0000001110000000 000011122221


Q ss_pred             HH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHH
Q 017844          117 MA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEA  176 (365)
Q Consensus       117 ~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~  176 (365)
                      +.     ......+|            ...+++++++||+ ..|+......+.+.|.+...  +..+|+++++.+ ....
T Consensus       103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~  181 (246)
T cd03237         103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDY  181 (246)
T ss_pred             cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence            10     00000111            1347799999998 78999999999988887632  456777776654 3345


Q ss_pred             HhccceeE
Q 017844          177 IRSRCLNI  184 (365)
Q Consensus       177 l~sR~~~i  184 (365)
                      +.+|+.++
T Consensus       182 ~~d~i~~l  189 (246)
T cd03237         182 LADRLIVF  189 (246)
T ss_pred             hCCEEEEE
Confidence            55665433

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK06921 hypothetical protein; Provisional

Probab=98.84  E-value=1.3e-08  Score=90.68  Aligned_cols=120  Identities=17%  Similarity=0.255  Sum_probs=66.1

Q ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhcCC-CCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHH
Q 017844           34 CPHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE  112 (365)
Q Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (365)
                      ..+++|+||+|+|||+|+.++++++... ....+++....                     .+......   .+  ...+
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~---------------------l~~~l~~~---~~--~~~~  170 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE---------------------GFGDLKDD---FD--LLEA  170 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH---------------------HHHHHHHH---HH--HHHH
Confidence            3459999999999999999999987543 22111111100                     00000000   00  0111


Q ss_pred             HHHHHHhcCCCCCCCCCCceEEEEeCCCC-------CCHHHHHHHHHHHhhhcC-ceeEEEEecCCCc----ccHHHhcc
Q 017844          113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDK-------LSREAQHSLRRTMEKYSA-SCRLILCCNSSSK----VTEAIRSR  180 (365)
Q Consensus       113 ~l~~~~~~~~~~~~~~~~~~vliiDE~~~-------L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~----l~~~l~sR  180 (365)
                      .+..           ....++|||||++.       .+......|+.+++.... +..+|++||....    +.+.+.||
T Consensus       171 ~~~~-----------~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~~~~~l~sR  239 (266)
T PRK06921        171 KLNR-----------MKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR  239 (266)
T ss_pred             HHHH-----------hcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhhhhhHHHHH
Confidence            1111           12458999999943       445556678888876543 4567888876542    23455555


Q ss_pred             ----ce--eEEecCCC
Q 017844          181 ----CL--NIRINSPT  190 (365)
Q Consensus       181 ----~~--~i~~~~~~  190 (365)
                          |.  .+.|+..+
T Consensus       240 i~~r~~~~~i~~~g~s  255 (266)
T PRK06921        240 IVEMCKDYLVIIKGDS  255 (266)
T ss_pred             HHHhccCeEEEecCcc
Confidence                32  56665543

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.84  E-value=9.8e-09  Score=95.46  Aligned_cols=158  Identities=13%  Similarity=0.231  Sum_probs=85.0

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccc
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANH   94 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~   94 (365)
                      ++.+.-.+..|..  +.|.||+|+||||++++|++ +..++.|.+.+++..+...| ......+.+..      .+..+.
T Consensus        20 l~~vsl~i~~Ge~--~~llG~sGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eN   96 (356)
T PRK11650         20 IKGIDLDVADGEF--IVLVGPSGCGKSTLLRMVAG-LERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVREN   96 (356)
T ss_pred             EeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHH
Confidence            3334444445554  89999999999999999999 67888898888886551111 11111110000      000000


Q ss_pred             eecCCCCcCccc---hhHHHHHHHHH-----HhcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHH
Q 017844           95 VELSPSDAGFQD---RYVVQEVIKEM-----AKNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRT  153 (365)
Q Consensus        95 ~~~~~~~~~~~~---~~~~~~~l~~~-----~~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~  153 (365)
                      +.+.....+...   ...+.+.++.+     ....+..+|            ...+++++++||+ ..|+......+.+.
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~  176 (356)
T PRK11650         97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE  176 (356)
T ss_pred             HHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            111000000000   00111222211     111111111            1347899999998 78999999988888


Q ss_pred             HhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          154 MEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       154 le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      |.+...  +..+|++|++.... ..+.+|+.+
T Consensus       177 l~~l~~~~g~tii~vTHd~~ea-~~l~D~i~v  207 (356)
T PRK11650        177 IQRLHRRLKTTSLYVTHDQVEA-MTLADRVVV  207 (356)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence            877543  46788888876543 345566543

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.84  E-value=1.2e-08  Score=90.05  Aligned_cols=156  Identities=12%  Similarity=0.177  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc--ceeccccccccc------
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLELTTLSSA------   92 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~------   92 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++.+++ +..+..|.+.+++......+...  ...+  ......      
T Consensus        18 ~l~~~sl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i--~~~~q~~~~~~~   92 (241)
T PRK10895         18 VVEDVSLTVNSGEI--VGLLGPNGAGKTTTFYMVVG-IVPRDAGNIIIDDEDISLLPLHARARRGI--GYLPQEASIFRR   92 (241)
T ss_pred             EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHHhCe--EEeccCCccccc
Confidence            33444444445554  99999999999999999999 55777787877765431000000  0000  000000      


Q ss_pred             ----cceecCCCCc-Cccc---hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844           93 ----NHVELSPSDA-GFQD---RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREA  146 (365)
Q Consensus        93 ----~~~~~~~~~~-~~~~---~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~  146 (365)
                          +.+.+...-. ....   ...+.+.++.+.-     .....+|            ...+++++++||+ ..|+...
T Consensus        93 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  172 (241)
T PRK10895         93 LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS  172 (241)
T ss_pred             CcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence                0000000000 0000   0112222222110     0000111            1247799999998 7899999


Q ss_pred             HHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       147 ~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ...+.+.+.+... +..+|++|++.+. ...+.+|+.
T Consensus       173 ~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~d~v~  208 (241)
T PRK10895        173 VIDIKRIIEHLRDSGLGVLITDHNVRE-TLAVCERAY  208 (241)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEEcCHHH-HHHhcCEEE
Confidence            9888888877643 4566777766543 334555553

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=1.2e-08  Score=95.22  Aligned_cols=156  Identities=16%  Similarity=0.275  Sum_probs=97.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee-cCCCCcCccchhHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGFQDRYVVQEVIK  115 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~  115 (365)
                      ++||||||||||.+||.|..-|++..+..+  +|-++                     +. |+     ......+|.++.
T Consensus       259 iLLyGPPGTGKTLiARqIGkMLNArePKIV--NGPeI---------------------L~KYV-----GeSE~NvR~LFa  310 (744)
T KOG0741|consen  259 ILLYGPPGTGKTLIARQIGKMLNAREPKIV--NGPEI---------------------LNKYV-----GESEENVRKLFA  310 (744)
T ss_pred             EEEECCCCCChhHHHHHHHHHhcCCCCccc--CcHHH---------------------HHHhh-----cccHHHHHHHHH
Confidence            899999999999999999997766554321  12111                     11 11     112224555555


Q ss_pred             HHHhcCCCCCCCCCCceEEEEeCCCCCC-------------HHHHHHHHHHHhh--hcCceeEEEEecCCCcccHHHhcc
Q 017844          116 EMAKNRPIDTKGKRGFKVLVLNEVDKLS-------------REAQHSLRRTMEK--YSASCRLILCCNSSSKVTEAIRSR  180 (365)
Q Consensus       116 ~~~~~~~~~~~~~~~~~vliiDE~~~L~-------------~~~~~~Ll~~le~--~~~~~~~Il~t~~~~~l~~~l~sR  180 (365)
                      +..+.... ....++-.|+|+||+|.+.             ....|.||.-|+.  .-.++.+|..||..+-+++++.+-
T Consensus       311 DAEeE~r~-~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRP  389 (744)
T KOG0741|consen  311 DAEEEQRR-LGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRP  389 (744)
T ss_pred             hHHHHHHh-hCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCC
Confidence            44322111 0123445899999999763             3467778877763  345788999999999999999874


Q ss_pred             c---eeEEecCCCHHHHHHHHHH---HHHHcCCCCCHHHHHHHHHHc
Q 017844          181 C---LNIRINSPTEEQIVKVLEF---IAKKEGLQLPSGFATRLAEKS  221 (365)
Q Consensus       181 ~---~~i~~~~~~~~~~~~iL~~---~~~~~~~~i~~~~~~~i~~~~  221 (365)
                      .   ..+++.-|+..-+.++++-   ..+..+.-=++-.++.||..+
T Consensus       390 GRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lT  436 (744)
T KOG0741|consen  390 GRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALT  436 (744)
T ss_pred             CceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHh
Confidence            4   2678888888877777653   333333322233466666654

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.84  E-value=1.2e-08  Score=89.93  Aligned_cols=54  Identities=17%  Similarity=0.237  Sum_probs=39.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+....+.+.+.+.+...  ...+|++|++.+ ....+.+|+..
T Consensus       147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~  203 (237)
T TIGR00968       147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVV  203 (237)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEE
Confidence            47799999998 88999999999999987644  456777776654 33445566543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.84  E-value=3e-08  Score=80.18  Aligned_cols=111  Identities=17%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (365)
                      +.+.||+|+||||+++++++ +..+..+.+.+++..                     .+.+.++   ... ...+. +. 
T Consensus        29 ~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~~~~---------------------~i~~~~~---lS~-G~~~r-v~-   80 (144)
T cd03221          29 IGLVGRNGAGKSTLLKLIAG-ELEPDEGIVTWGSTV---------------------KIGYFEQ---LSG-GEKMR-LA-   80 (144)
T ss_pred             EEEECCCCCCHHHHHHHHcC-CCCCCceEEEECCeE---------------------EEEEEcc---CCH-HHHHH-HH-
Confidence            89999999999999999998 456666666655421                     1222221   111 11111 11 


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          117 MAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       117 ~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ++.  .    ...+++++++||+ ..++......+.+.+.+.  +..+++++++.+. ...+.+|+.++
T Consensus        81 lar--a----l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~-~~~~~d~v~~l  140 (144)
T cd03221          81 LAK--L----LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYF-LDQVATKIIEL  140 (144)
T ss_pred             HHH--H----HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHH-HHHhCCEEEEE
Confidence            111  1    1345689999998 789999999999999876  3456666666543 34444555433

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.84  E-value=1.2e-08  Score=90.06  Aligned_cols=157  Identities=15%  Similarity=0.254  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC--c-ceeccccccccc-----
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS--R-NIDLELTTLSSA-----   92 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~--~-~~~~~~~~~~~~-----   92 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++..+...+..  . ...+  ......     
T Consensus        16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i--~~~~q~~~~~~   90 (240)
T PRK09493         16 VLHNIDLNIDQGEV--VVIIGPSGSGKSTLLRCINK-LEEITSGDLIVDGLKVNDPKVDERLIRQEA--GMVFQQFYLFP   90 (240)
T ss_pred             EeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCChhHHHHhhce--EEEecccccCC
Confidence            34444444445544  89999999999999999999 5577788888877544110000  0 0000  000000     


Q ss_pred             -----cceecCCCC-cCccch---hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHH
Q 017844           93 -----NHVELSPSD-AGFQDR---YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSRE  145 (365)
Q Consensus        93 -----~~~~~~~~~-~~~~~~---~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~  145 (365)
                           +.+.+.... .+....   ..+.+.++.+.     ...+..+|            ...+++++++||+ ..|+..
T Consensus        91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~  170 (240)
T PRK09493         91 HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE  170 (240)
T ss_pred             CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence                 000000000 000000   01112222110     00000111            1247799999998 789999


Q ss_pred             HHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       146 ~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ....+.+.+.+... +..+|++|++.+. .+.+.+|+..
T Consensus       171 ~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~  208 (240)
T PRK09493        171 LRHEVLKVMQDLAEEGMTMVIVTHEIGF-AEKVASRLIF  208 (240)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            99999999987643 4567777776653 3455566543

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.83  E-value=9.7e-09  Score=96.10  Aligned_cols=158  Identities=16%  Similarity=0.254  Sum_probs=83.3

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccc
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANH   94 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~   94 (365)
                      ++.+.-.+..|..  +.|.||+|+|||||+++|++ +..++.+.+.+++..+...+ ......+.+..      .+..+.
T Consensus        19 l~~vsl~i~~Ge~--~~l~G~nGsGKSTLL~~iaG-l~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~en   95 (369)
T PRK11000         19 SKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAG-LEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN   95 (369)
T ss_pred             EeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHH
Confidence            3334334445554  89999999999999999999 66788888888776541111 00101110000      000000


Q ss_pred             eecCCCCcCccch---hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHH
Q 017844           95 VELSPSDAGFQDR---YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRT  153 (365)
Q Consensus        95 ~~~~~~~~~~~~~---~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~  153 (365)
                      +.+.....+....   ..+.+.++.+.-     ..+..+|            ...+++++++||+ ..|+......+.+.
T Consensus        96 i~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~  175 (369)
T PRK11000         96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE  175 (369)
T ss_pred             HHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            0000000000000   011222222110     0111111            1247899999998 78999999999888


Q ss_pred             HhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          154 MEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       154 le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      |.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       176 L~~l~~~~g~tvI~vTHd~~~-~~~~~d~i~v  206 (369)
T PRK11000        176 ISRLHKRLGRTMIYVTHDQVE-AMTLADKIVV  206 (369)
T ss_pred             HHHHHHHhCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            887632  4677888877653 2345566543

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.83  E-value=4.7e-09  Score=89.21  Aligned_cols=43  Identities=14%  Similarity=0.244  Sum_probs=34.5

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCC
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~  171 (365)
                      .+++++++||+ ..|+......+.+.|.+... +..+|++|++.+
T Consensus       144 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~  188 (190)
T TIGR01166       144 MRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD  188 (190)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence            47799999998 88999999999999987643 456777777654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.83  E-value=1.3e-08  Score=89.81  Aligned_cols=159  Identities=16%  Similarity=0.229  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccccc------ccccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT------LSSAN   93 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------~~~~~   93 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++......+. .....+....      .+..+
T Consensus        17 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   93 (239)
T cd03296          17 ALDDVSLDIPSGEL--VALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD   93 (239)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence            34444444445554  89999999999999999999 556777888777754311000 0001000000      00000


Q ss_pred             ceecCCCCcCc---cch----hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844           94 HVELSPSDAGF---QDR----YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH  148 (365)
Q Consensus        94 ~~~~~~~~~~~---~~~----~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~  148 (365)
                      .+.+.....+.   ...    ..+.+.++.+.     ......+|            ...+++++++||+ ..|+.....
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~  173 (239)
T cd03296          94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK  173 (239)
T ss_pred             HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            01110000000   000    01122222211     01111111            1247789999998 889999999


Q ss_pred             HHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       149 ~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+.+.+.+...  ...+|++|++.+.+ ..+.+|+.+
T Consensus       174 ~l~~~l~~~~~~~~~tvii~sH~~~~~-~~~~d~i~~  209 (239)
T cd03296         174 ELRRWLRRLHDELHVTTVFVTHDQEEA-LEVADRVVV  209 (239)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence            99999987643  45677777776532 344455433

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.1e-07  Score=87.09  Aligned_cols=68  Identities=15%  Similarity=0.195  Sum_probs=48.8

Q ss_pred             ccHHHhccc-eeEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Q 017844          173 VTEAIRSRC-LNIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS---NRSLRRAILSFETC  235 (365)
Q Consensus       173 l~~~l~sR~-~~i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~~---~g~lr~ai~~l~~~  235 (365)
                      +.|.+.-|+ ..+.|..++.+++..+|..           .+...++  .+++++++.||+.+   +...|-+..+++++
T Consensus       425 mIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~  504 (564)
T KOG0745|consen  425 MIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESL  504 (564)
T ss_pred             CcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            345555666 3788999999999998853           1122333  57899999999854   45778888889888


Q ss_pred             HhcCC
Q 017844          236 RVQQY  240 (365)
Q Consensus       236 ~~~~~  240 (365)
                      .+.+.
T Consensus       505 Lleam  509 (564)
T KOG0745|consen  505 LLEAM  509 (564)
T ss_pred             Hhhhc
Confidence            76653

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.83  E-value=1.2e-08  Score=89.95  Aligned_cols=157  Identities=12%  Similarity=0.101  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc--ceeccccccccc------
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLELTTLSSA------   92 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~------   92 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++......+...  ...+  ......      
T Consensus        20 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i--~~~~q~~~~~~~   94 (237)
T PRK11614         20 ALHEVSLHINQGEI--VTLIGANGAGKTTLLGTLCG-DPRATSGRIVFDGKDITDWQTAKIMREAV--AIVPEGRRVFSR   94 (237)
T ss_pred             eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CCCCCCceEEECCEecCCCCHHHHHHhCE--EEeccCcccCCC
Confidence            44444444555555  89999999999999999998 55777788877775431100000  0000  000000      


Q ss_pred             ----cceecCCCCcCcc-chhHHHHHHHHHH------hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844           93 ----NHVELSPSDAGFQ-DRYVVQEVIKEMA------KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH  148 (365)
Q Consensus        93 ----~~~~~~~~~~~~~-~~~~~~~~l~~~~------~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~  148 (365)
                          +.+.+........ ....+.+.++.+.      ......+|            ...+++++++||+ ..|+.....
T Consensus        95 ~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~  174 (237)
T PRK11614         95 MTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ  174 (237)
T ss_pred             CcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHH
Confidence                0000000000000 0011122222221      11111111            1237899999998 889999999


Q ss_pred             HHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       149 ~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+.+.+.+... +..+|++|++.+. ...+.+|+.+
T Consensus       175 ~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~  209 (237)
T PRK11614        175 QIFDTIEQLREQGMTIFLVEQNANQ-ALKLADRGYV  209 (237)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCcHHH-HHhhCCEEEE
Confidence            99999887643 4566677666543 3345566543

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.83  E-value=3.6e-09  Score=93.98  Aligned_cols=55  Identities=13%  Similarity=0.239  Sum_probs=39.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|++|++.+ ....+.+|+.++
T Consensus       161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l  217 (250)
T PRK11264        161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFM  217 (250)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence            37889999998 78999999999999887643 456666666654 334555665443

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.83  E-value=1.5e-08  Score=87.18  Aligned_cols=146  Identities=15%  Similarity=0.175  Sum_probs=77.1

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc----------
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS----------   91 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------   91 (365)
                      ++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++.............+  .....          
T Consensus        17 l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~p~~G~v~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~tv   91 (204)
T PRK13538         17 FSGLSFTLNAGEL--VQIEGPNGAGKTSLLRILAG-LARPDAGEVLWQGEPIRRQRDEYHQDL--LYLGHQPGIKTELTA   91 (204)
T ss_pred             EecceEEECCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEcccchHHhhhhe--EEeCCccccCcCCcH
Confidence            3333334444544  89999999999999999999 557778888777654310000000000  00000          


Q ss_pred             ccceecCCCCcCccchhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHH
Q 017844           92 ANHVELSPSDAGFQDRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRT  153 (365)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~  153 (365)
                      .+.+.+.....+......+.+.++.+.     ......+|            ...+++++++||+ ..|+......+.+.
T Consensus        92 ~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  171 (204)
T PRK13538         92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL  171 (204)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            000000000000001111222222211     10100111            1347899999998 78999999999999


Q ss_pred             Hhhhc-CceeEEEEecCCCc
Q 017844          154 MEKYS-ASCRLILCCNSSSK  172 (365)
Q Consensus       154 le~~~-~~~~~Il~t~~~~~  172 (365)
                      +.+.. .+..+|++|++.+.
T Consensus       172 l~~~~~~~~tiii~sh~~~~  191 (204)
T PRK13538        172 LAQHAEQGGMVILTTHQDLP  191 (204)
T ss_pred             HHHHHHCCCEEEEEecChhh
Confidence            98763 34567777777654

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.83  E-value=4.3e-09  Score=93.86  Aligned_cols=55  Identities=16%  Similarity=0.204  Sum_probs=39.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+..  .+..+|++|++.+ ....+.+|+..+
T Consensus       157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  214 (258)
T PRK13548        157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLL  214 (258)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEE
Confidence            36799999998 7899999999999998764  3456777776654 334455665433

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=1.2e-08  Score=94.61  Aligned_cols=145  Identities=14%  Similarity=0.209  Sum_probs=84.0

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (365)
                      ++.+.-.+..|..  +.|.||+|+||||++++|++ +..++.+.+.+++..+...|..+            ..+.+..++
T Consensus        22 l~~isl~i~~Ge~--~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~~~~~~------------r~ig~vfQ~   86 (351)
T PRK11432         22 IDNLNLTIKQGTM--VTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRSIQQ------------RDICMVFQS   86 (351)
T ss_pred             EeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHH------------CCEEEEeCC
Confidence            3344444445554  89999999999999999999 67888888888886551111100            011111111


Q ss_pred             cCccc------------------hhHHHHHHHHHHhc---------CCCCCCC------------CCCceEEEEeCC-CC
Q 017844          102 AGFQD------------------RYVVQEVIKEMAKN---------RPIDTKG------------KRGFKVLVLNEV-DK  141 (365)
Q Consensus       102 ~~~~~------------------~~~~~~~l~~~~~~---------~~~~~~~------------~~~~~vliiDE~-~~  141 (365)
                      ...+.                  .....+.+..+...         .+..+|+            ..+++++++||+ ..
T Consensus        87 ~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~  166 (351)
T PRK11432         87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN  166 (351)
T ss_pred             cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence            11111                  01111111111111         1111121            237899999998 88


Q ss_pred             CCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          142 LSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       142 L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      |+......+...|.+...  +..+|++|++.+.. ..+.+|+.
T Consensus       167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~-~~laD~i~  208 (351)
T PRK11432        167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEA-FAVSDTVI  208 (351)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEE
Confidence            999999888888876533  46778888776542 34556654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.82  E-value=3.9e-09  Score=92.05  Aligned_cols=143  Identities=18%  Similarity=0.223  Sum_probs=74.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch---hHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---YVVQEV  113 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  113 (365)
                      +.|.||+|+||||+++++++ +..+..+.+.+++... .... ....+ ....+..+.+.+.....+....   ....+.
T Consensus        51 ~~i~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~-~~~~-~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~  126 (224)
T cd03220          51 IGLIGRNGAGKSTLLRLLAG-IYPPDSGTVTVRGRVS-SLLG-LGGGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEI  126 (224)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEc-hhhc-ccccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            89999999999999999999 5567778777776432 1000 00000 0000000111100000000000   011111


Q ss_pred             HHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCccc
Q 017844          114 IKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSKVT  174 (365)
Q Consensus       114 l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~l~  174 (365)
                      ++.+.     ......+|            ...+++++++||+ ..|+...+..+.+.+.+.... ..+|+++++.+. .
T Consensus       127 l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~-~  205 (224)
T cd03220         127 IEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-I  205 (224)
T ss_pred             HHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H
Confidence            11110     00000111            1247799999998 789999999999998876433 556666666543 3


Q ss_pred             HHHhccceeE
Q 017844          175 EAIRSRCLNI  184 (365)
Q Consensus       175 ~~l~sR~~~i  184 (365)
                      ..+.+|+.++
T Consensus       206 ~~~~d~i~~l  215 (224)
T cd03220         206 KRLCDRALVL  215 (224)
T ss_pred             HHhCCEEEEE
Confidence            3444555433

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.6e-08  Score=92.65  Aligned_cols=49  Identities=27%  Similarity=0.455  Sum_probs=41.8

Q ss_pred             CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      ..|.|++||+.+++.+.-+..+|.  |++++||||||||.+++.+.. ++.+
T Consensus       176 ~D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~-lLPp  224 (490)
T COG0606         176 PDFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPG-LLPP  224 (490)
T ss_pred             cchhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcc-cCCC
Confidence            379999999999999988876663  499999999999999999987 4443

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.82  E-value=5.4e-09  Score=90.50  Aligned_cols=159  Identities=18%  Similarity=0.260  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc-------eecCCCcceecccccccccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW-------KIDAGSRNIDLELTTLSSAN   93 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~   93 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++...       ...|........ ...+..+
T Consensus        14 ~l~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~-~~~tv~e   89 (213)
T cd03235          14 VLEDVSFEVKPGEF--LAIVGPNGAGKSTLLKAILG-LLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRD-FPISVRD   89 (213)
T ss_pred             eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCccHHHHHhheEEeccccccccC-CCCcHHH
Confidence            34444444555555  99999999999999999999 5567778777776432       011111000000 0000001


Q ss_pred             ceecCCCCc-C---cc---chhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844           94 HVELSPSDA-G---FQ---DRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH  148 (365)
Q Consensus        94 ~~~~~~~~~-~---~~---~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~  148 (365)
                      .+.+..... .   ..   ....+.+.++.+.     ......+|            ...+++++++||+ ..|++....
T Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~  169 (213)
T cd03235          90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQE  169 (213)
T ss_pred             HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            111100000 0   00   0111222222211     11111111            1247899999998 889999999


Q ss_pred             HHHHHHhhhc-CceeEEEEecCCCcccHHHhccceeE
Q 017844          149 SLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       149 ~Ll~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+.+.+.+.. .+..+|++|++.+. ...+.+|+.++
T Consensus       170 ~l~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l  205 (213)
T cd03235         170 DIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLL  205 (213)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEE
Confidence            9999998764 34567777776553 34444555433

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.82  E-value=6.1e-09  Score=91.42  Aligned_cols=54  Identities=13%  Similarity=0.243  Sum_probs=40.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+...  ...+|+++++...+ +.+.+|+..
T Consensus       147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~-~~~~d~i~~  203 (232)
T cd03300         147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA-LTMSDRIAV  203 (232)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhcCEEEE
Confidence            47899999998 78999999999999987653  45677777766543 445566543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.81  E-value=1.6e-08  Score=88.65  Aligned_cols=145  Identities=19%  Similarity=0.268  Sum_probs=76.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc-----ccccccceecCCCC--cCccc---
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT-----TLSSANHVELSPSD--AGFQD---  106 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~---  106 (365)
                      +.|.||+|+||||+++++++ +..+..+.+.+++..+ ........-+...     ..+..+.+.+....  .....   
T Consensus        14 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~-~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~   91 (230)
T TIGR01184        14 ISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQI-TEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSER   91 (230)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEC-CCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence            89999999999999999999 5577788888877544 1110000000000     00000011110000  00000   


Q ss_pred             hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEE
Q 017844          107 RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILC  166 (365)
Q Consensus       107 ~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~  166 (365)
                      ...+.+.++.+.     ......+|            ...+++++++||+ ..|+......+.+.|.+...  +..+|++
T Consensus        92 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~  171 (230)
T TIGR01184        92 RAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV  171 (230)
T ss_pred             HHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            001222222211     01111111            1247899999998 78999999999999987532  4567777


Q ss_pred             ecCCCcccHHHhccceeE
Q 017844          167 CNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       167 t~~~~~l~~~l~sR~~~i  184 (365)
                      |++.+. ...+.+|+.++
T Consensus       172 sH~~~~-~~~~~d~v~~l  188 (230)
T TIGR01184       172 THDVDE-ALLLSDRVVML  188 (230)
T ss_pred             eCCHHH-HHHhcCEEEEE
Confidence            776553 34445555443

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=1.4e-08  Score=95.44  Aligned_cols=53  Identities=11%  Similarity=0.194  Sum_probs=39.0

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|++.....+.+.|.+..  .+..+|++|++.+.+ ..+.+|+.
T Consensus       181 ~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~-~~~~Dri~  236 (400)
T PRK10070        181 INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEA-MRIGDRIA  236 (400)
T ss_pred             cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHH-HHhCCEEE
Confidence            47899999998 8899999999999887763  245677777776533 34455553

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.81  E-value=1.9e-08  Score=86.25  Aligned_cols=143  Identities=13%  Similarity=0.105  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc-eeccccccc---------
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN-IDLELTTLS---------   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~---------   90 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++.... ...... ..+  ....         
T Consensus        16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~-~~~~~~~~~i--~~~~q~~~~~~~~   89 (200)
T PRK13540         16 LLQQISFHLPAGGL--LHLKGSNGAGKTTLLKLIAG-LLNPEKGEILFERQSIK-KDLCTYQKQL--CFVGHRSGINPYL   89 (200)
T ss_pred             EEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeeEEECCCccc-cCHHHHHhhe--EEeccccccCcCC
Confidence            33444444445544  99999999999999999998 56777888887775441 000000 000  0000         


Q ss_pred             -cccceecCCCCcCccchhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844           91 -SANHVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLR  151 (365)
Q Consensus        91 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll  151 (365)
                       ..+.+.+... .. .....+.+.++.+..     .....+|            ...+++++++||+ ..|+......+.
T Consensus        90 tv~~~~~~~~~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~  167 (200)
T PRK13540         90 TLRENCLYDIH-FS-PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII  167 (200)
T ss_pred             CHHHHHHHHHh-cC-cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence             0000000000 00 000112223322110     0000111            1247899999998 889999999999


Q ss_pred             HHHhhhc-CceeEEEEecCCC
Q 017844          152 RTMEKYS-ASCRLILCCNSSS  171 (365)
Q Consensus       152 ~~le~~~-~~~~~Il~t~~~~  171 (365)
                      +.+.+.. ....+|++|++..
T Consensus       168 ~~l~~~~~~~~tiii~sh~~~  188 (200)
T PRK13540        168 TKIQEHRAKGGAVLLTSHQDL  188 (200)
T ss_pred             HHHHHHHHcCCEEEEEeCCch
Confidence            9998753 3456777777655

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.81  E-value=7.5e-08  Score=88.13  Aligned_cols=137  Identities=20%  Similarity=0.344  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844           21 IAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (365)
Q Consensus        21 ~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (365)
                      ++...+.+++.  ....+++|+||+|+|||+|+.++|+++.......+++....+                     +...
T Consensus       168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l---------------------~~~l  226 (329)
T PRK06835        168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL---------------------IEIL  226 (329)
T ss_pred             HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH---------------------HHHH
Confidence            44445555552  122459999999999999999999988654332222221111                     1100


Q ss_pred             CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC--CCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCc---
Q 017844           99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVD--KLSREAQHSLRRTMEKYSA-SCRLILCCNSSSK---  172 (365)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~--~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~---  172 (365)
                      ... .........+.+..+           ...++|||||+.  ..++..+..|+.+++.... +..+|++||....   
T Consensus       227 ~~~-~~~~~~~~~~~~~~l-----------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~  294 (329)
T PRK06835        227 REI-RFNNDKELEEVYDLL-----------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL  294 (329)
T ss_pred             HHH-HhccchhHHHHHHHh-----------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence            000 000000001111111           245899999994  4567778889999987543 4568888886542   


Q ss_pred             --ccHHHhccc----eeEEecCCC
Q 017844          173 --VTEAIRSRC----LNIRINSPT  190 (365)
Q Consensus       173 --l~~~l~sR~----~~i~~~~~~  190 (365)
                        +.+.+.||+    .++.|...+
T Consensus       295 ~~~~eri~SRL~~~~~~i~~~G~d  318 (329)
T PRK06835        295 KTYSERISSRLLGNFTLLKFYGED  318 (329)
T ss_pred             HHHhHHHHHHHHcCCEEEEecCcC
Confidence              445677775    467776544

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.81  E-value=1.9e-08  Score=87.14  Aligned_cols=146  Identities=18%  Similarity=0.260  Sum_probs=76.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccccc------cccccceecCCCCcCc---cc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT------LSSANHVELSPSDAGF---QD  106 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~  106 (365)
                      +.|.||+|+||||+++++++ +..+..+.+.+++......+. .....+....      .+..+.+.+.......   ..
T Consensus        27 ~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~  105 (213)
T TIGR01277        27 VAIMGPSGAGKSTLLNLIAG-FIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQ  105 (213)
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHH
Confidence            99999999999999999998 567777878777754310000 0000000000      0000001000000000   00


Q ss_pred             hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEE
Q 017844          107 RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILC  166 (365)
Q Consensus       107 ~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~  166 (365)
                      ...+.+.++.+.     ...+..+|            ...+++++++||+ ..|+...+..+.+.|.+...  +..+|++
T Consensus       106 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~v  185 (213)
T TIGR01277       106 QEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV  185 (213)
T ss_pred             HHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            111222222211     11111111            1247799999998 78999999999999988643  4567777


Q ss_pred             ecCCCcccHHHhccceeE
Q 017844          167 CNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       167 t~~~~~l~~~l~sR~~~i  184 (365)
                      |++.+.+ ..+.+|+..+
T Consensus       186 sh~~~~~-~~~~d~v~~l  202 (213)
T TIGR01277       186 THHLSDA-RAIASQIAVV  202 (213)
T ss_pred             eCCHHHH-HhhcCeEEEE
Confidence            7765532 3444555433

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.81  E-value=1.8e-08  Score=89.07  Aligned_cols=54  Identities=9%  Similarity=0.180  Sum_probs=39.5

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~-~~~~~d~i~~  208 (242)
T cd03295         152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE-AFRLADRIAI  208 (242)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEE
Confidence            47799999998 78999999999999987642  4567777776553 3445566543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.81  E-value=2.5e-08  Score=85.30  Aligned_cols=45  Identities=11%  Similarity=0.130  Sum_probs=35.7

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhh-cCceeEEEEecCCCcc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKY-SASCRLILCCNSSSKV  173 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~-~~~~~~Il~t~~~~~l  173 (365)
                      .+++++++||+ ..|+......+.+.+.+. ..+..+|+++++...+
T Consensus       144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~  190 (198)
T TIGR01189       144 SRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL  190 (198)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence            47899999998 789999999999999875 3345688888876543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.81  E-value=1.3e-08  Score=94.55  Aligned_cols=139  Identities=14%  Similarity=0.210  Sum_probs=82.1

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (365)
                      .+..|..  +.|.||+|+||||++++|++ +..++.+.+.+++..+...|...            ..+.+..++...+..
T Consensus        26 ~i~~Ge~--~~l~GpsGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~~~~~~~------------r~ig~v~Q~~~lfp~   90 (353)
T TIGR03265        26 SVKKGEF--VCLLGPSGCGKTTLLRIIAG-LERQTAGTIYQGGRDITRLPPQK------------RDYGIVFQSYALFPN   90 (353)
T ss_pred             EEcCCCE--EEEECCCCCCHHHHHHHHHC-CCCCCceEEEECCEECCCCCHHH------------CCEEEEeCCcccCCC
Confidence            3344544  89999999999999999999 67888898888886551111100            111222222111111


Q ss_pred             hH----------------------HHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHH
Q 017844          108 YV----------------------VQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQ  147 (365)
Q Consensus       108 ~~----------------------~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~  147 (365)
                      .+                      +.+.++.+.     ...+..+|            ...+++++++||+ ..|+....
T Consensus        91 ~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r  170 (353)
T TIGR03265        91 LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVR  170 (353)
T ss_pred             CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            11                      122222211     01111111            1237899999998 78999999


Q ss_pred             HHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       148 ~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ..+.+.|.+...  +..+|++|++.+.. ..+.+|+.
T Consensus       171 ~~l~~~L~~l~~~~~~tvi~vTHd~~ea-~~l~d~i~  206 (353)
T TIGR03265       171 EHLRTEIRQLQRRLGVTTIMVTHDQEEA-LSMADRIV  206 (353)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEE
Confidence            988888877533  46788888776633 34556653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=1.1e-08  Score=92.25  Aligned_cols=159  Identities=14%  Similarity=0.239  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC---Ccceeccccc----c---c
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLELTT----L---S   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~----~---~   90 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++..+...+.   .....+.+..    +   +
T Consensus        22 ~l~~vsl~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t   98 (279)
T PRK13635         22 ALKDVSFSVYEGEW--VAIVGHNGSGKSTLAKLLNG-LLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT   98 (279)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence            44444445555655  89999999999999999998 567888888888865411000   0000000000    0   0


Q ss_pred             cccceecCCCCcCccch---hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844           91 SANHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                      ..+.+.+.....+....   ..+.+.++.+.     ...+..+|            ...+++++++||+ ..|++..+..
T Consensus        99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~  178 (279)
T PRK13635         99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE  178 (279)
T ss_pred             HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            00001010000010000   01112221110     11111111            1247899999998 8899999999


Q ss_pred             HHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      +.+.+.+...  +..+|++|++.+.+ .. .+|+.++
T Consensus       179 l~~~l~~l~~~~~~tilivsH~~~~~-~~-~d~i~~l  213 (279)
T PRK13635        179 VLETVRQLKEQKGITVLSITHDLDEA-AQ-ADRVIVM  213 (279)
T ss_pred             HHHHHHHHHHcCCCEEEEEecCHHHH-Hc-CCEEEEE
Confidence            9999987653  46777788776654 33 5665433

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.80  E-value=1.8e-08  Score=88.22  Aligned_cols=50  Identities=24%  Similarity=0.384  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++...
T Consensus        20 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~   69 (228)
T cd03257          20 ALDDVSFSIKKGET--LGLVGESGSGKSTLARAILG-LLKPTSGSIIFDGKDL   69 (228)
T ss_pred             eecCceeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEEc
Confidence            44444445555655  99999999999999999999 5577788888777543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.80  E-value=6.2e-09  Score=96.96  Aligned_cols=139  Identities=19%  Similarity=0.306  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (365)
                      +.+++.+...+..|..  +-+.||+|+||||++|.+.+ ...+..+.+.+++.++.        .+  ..-.-+.|+.|.
T Consensus       349 ~pil~~isF~l~~G~~--lgIIGPSgSGKSTLaR~lvG-~w~p~~G~VRLDga~l~--------qW--d~e~lG~hiGYL  415 (580)
T COG4618         349 KPILKGISFALQAGEA--LGIIGPSGSGKSTLARLLVG-IWPPTSGSVRLDGADLR--------QW--DREQLGRHIGYL  415 (580)
T ss_pred             CcceecceeEecCCce--EEEECCCCccHHHHHHHHHc-ccccCCCcEEecchhhh--------cC--CHHHhccccCcC
Confidence            3455666666666665  89999999999999999998 66788899999887651        11  222336678888


Q ss_pred             CCCcCccchhHHHHHHHHHHhc------------C---------CC-----------CCC------------CCCCceEE
Q 017844           99 PSDAGFQDRYVVQEVIKEMAKN------------R---------PI-----------DTK------------GKRGFKVL  134 (365)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~------------~---------~~-----------~~~------------~~~~~~vl  134 (365)
                      |++....+. ++.+++..+...            .         |.           .+|            ..+++.++
T Consensus       416 PQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv  494 (580)
T COG4618         416 PQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV  494 (580)
T ss_pred             cccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence            887654442 344444333211            0         00           111            13578999


Q ss_pred             EEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844          135 VLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS  171 (365)
Q Consensus       135 iiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~  171 (365)
                      ++||+ .+|+.+...+|...+.... ..+.+|++++.+.
T Consensus       495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs  533 (580)
T COG4618         495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS  533 (580)
T ss_pred             EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            99999 6799988889999887654 4566777777765

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.80  E-value=1.8e-08  Score=88.96  Aligned_cols=54  Identities=9%  Similarity=0.184  Sum_probs=39.7

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.|.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~  217 (241)
T cd03256         161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVG  217 (241)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            47899999998 88999999999999987642  4567777777654 3445556543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.80  E-value=1.9e-08  Score=87.12  Aligned_cols=54  Identities=19%  Similarity=0.256  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|++|++.+.+ ..+.+|+.+
T Consensus       148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~-~~~~d~i~~  204 (214)
T cd03297         148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA-EYLADRIVV  204 (214)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH-HHhcCEEEE
Confidence            47899999998 88999999999999987643  45677777665533 344455443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.80  E-value=1.2e-07  Score=95.52  Aligned_cols=73  Identities=21%  Similarity=0.273  Sum_probs=53.7

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhc-------------CceeEEEEecCCC-------------cccHHHhccce-
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYS-------------ASCRLILCCNSSS-------------KVTEAIRSRCL-  182 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~-------------~~~~~Il~t~~~~-------------~l~~~l~sR~~-  182 (365)
                      ...+++|||++.|+...+..|++.||+..             ..+.+|.++|...             .+++++.|||. 
T Consensus       557 dgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDL  636 (915)
T PTZ00111        557 NGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDL  636 (915)
T ss_pred             CCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcE
Confidence            34699999999999999999999998642             3466777776531             47899999994 


Q ss_pred             -eEEecCCCHHHHHHHHHHHH
Q 017844          183 -NIRINSPTEEQIVKVLEFIA  202 (365)
Q Consensus       183 -~i~~~~~~~~~~~~iL~~~~  202 (365)
                       .+-+..++.+.=..+..+++
T Consensus       637 If~l~D~~d~~~D~~lA~hI~  657 (915)
T PTZ00111        637 IYLVLDHIDQDTDQLISLSIA  657 (915)
T ss_pred             EEEecCCCChHHHHHHHHHHH
Confidence             45667777666555544444

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.80  E-value=7.5e-09  Score=90.39  Aligned_cols=159  Identities=15%  Similarity=0.246  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee-cCCC--cceeccccc-----cccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-DAGS--RNIDLELTT-----LSSA   92 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~-~~~~--~~~~~~~~~-----~~~~   92 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..+..|.+.+++..... .+..  ....+.+..     .+..
T Consensus        22 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~   98 (225)
T PRK10247         22 ILNNISFSLRAGEF--KLITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY   98 (225)
T ss_pred             eeeccEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHH
Confidence            44444444445544  89999999999999999999 567777877777643310 0000  000000000     0000


Q ss_pred             cceecCCCCcCcc-chhHHHHHHHHHHh------cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844           93 NHVELSPSDAGFQ-DRYVVQEVIKEMAK------NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~------~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                      +.+.+...-.... ....+.+.++.+.-      .....+|            ...+++++++||+ ..|++.....+.+
T Consensus        99 enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  178 (225)
T PRK10247         99 DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE  178 (225)
T ss_pred             HHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            0000000000000 01112223322211      0010111            1247899999998 8899999999999


Q ss_pred             HHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       153 ~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+.+...  +..+|+++++.+.+ + ..+|+..+
T Consensus       179 ~l~~~~~~~~~tvii~sh~~~~~-~-~~d~i~~l  210 (225)
T PRK10247        179 IIHRYVREQNIAVLWVTHDKDEI-N-HADKVITL  210 (225)
T ss_pred             HHHHHHHhcCCEEEEEECChHHH-H-hCCEEEEE
Confidence            9987632  45678888776644 3 34554444

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.80  E-value=1.7e-08  Score=90.56  Aligned_cols=53  Identities=8%  Similarity=0.105  Sum_probs=38.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|++|++.+.+ ..+.+|+.
T Consensus       160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~-~~~~d~v~  215 (269)
T PRK11831        160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEV-LSIADHAY  215 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH-HHhhCEEE
Confidence            46789999998 88999999999999987643  45677777765433 34445553

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=1.6e-08  Score=88.74  Aligned_cols=150  Identities=17%  Similarity=0.309  Sum_probs=79.8

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccceecCCCC
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANHVELSPSD  101 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~  101 (365)
                      +..|..  +.|.||+|+||||+++.+++ +..+..+.+.+++......+ ......+....      .+..+.+.+....
T Consensus        22 i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~   98 (232)
T PRK10771         22 VERGER--VAILGPSGAGKSTLLNLIAG-FLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNP   98 (232)
T ss_pred             EcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccc
Confidence            334444  99999999999999999998 55777788877775431100 00000100000      0000001110000


Q ss_pred             -cCcc--chhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-
Q 017844          102 -AGFQ--DRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-  159 (365)
Q Consensus       102 -~~~~--~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-  159 (365)
                       ....  ....+.+.++.+.     ...+..+|            ...+++++++||+ ..|+...+..+.+.+.+... 
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~  178 (232)
T PRK10771         99 GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE  178 (232)
T ss_pred             ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence             0000  0111222232221     11111111            1347899999998 78999999999999987632 


Q ss_pred             -ceeEEEEecCCCcccHHHhccce
Q 017844          160 -SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       160 -~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                       +..+|++|++.+.+ ..+.+|+.
T Consensus       179 ~~~tiii~sH~~~~~-~~~~d~i~  201 (232)
T PRK10771        179 RQLTLLMVSHSLEDA-ARIAPRSL  201 (232)
T ss_pred             cCCEEEEEECCHHHH-HHhCCEEE
Confidence             45677777776633 44556654

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.79  E-value=1.6e-08  Score=94.22  Aligned_cols=147  Identities=13%  Similarity=0.210  Sum_probs=84.5

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC--ccceeccccceecCCCcceeccccccccccceecCC
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA--EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (365)
                      ++.+.-.+..|..  +.|.||+|+||||++++|++ +..++.  +.+.+++..+...|...            ..+.+..
T Consensus        21 l~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaG-l~~p~~~~G~i~~~g~~~~~~~~~~------------r~ig~vf   85 (362)
T TIGR03258        21 LDDLSLEIEAGEL--LALIGKSGCGKTTLLRAIAG-FVKAAGLTGRIAIADRDLTHAPPHK------------RGLALLF   85 (362)
T ss_pred             EeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCCCEEEEECCEECCCCCHHH------------CCEEEEE
Confidence            3333334445554  89999999999999999999 667888  88888876541111000            0111111


Q ss_pred             CCcCccchh----------------------HHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-
Q 017844          100 SDAGFQDRY----------------------VVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-  139 (365)
Q Consensus       100 ~~~~~~~~~----------------------~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-  139 (365)
                      ++...+...                      .+.+.++.+.     ...+..+|            ...+++++++||+ 
T Consensus        86 Q~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~  165 (362)
T TIGR03258        86 QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL  165 (362)
T ss_pred             CCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            111111111                      1112222211     00111111            1247899999998 


Q ss_pred             CCCCHHHHHHHHHHHhhhcC---ceeEEEEecCCCcccHHHhccceeE
Q 017844          140 DKLSREAQHSLRRTMEKYSA---SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       140 ~~L~~~~~~~Ll~~le~~~~---~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ..|+......+.+.|.+...   +..+|++|++.+.. ..+.+|..++
T Consensus       166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea-~~l~dri~vl  212 (362)
T TIGR03258       166 SALDANIRANMREEIAALHEELPELTILCVTHDQDDA-LTLADKAGIM  212 (362)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence            88999999999998887643   45677788776543 4555666443

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=1.8e-08  Score=90.49  Aligned_cols=158  Identities=13%  Similarity=0.265  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC---Ccceeccccc-------cc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLELTT-------LS   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~-------~~   90 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..+..|.+.+++......+.   .....+....       .+
T Consensus        24 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t  100 (271)
T PRK13632         24 ALKNVSFEINEGEY--VAILGHNGSGKSTISKILTG-LLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT  100 (271)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence            34444444445554  89999999999999999999 557777888887754411000   0000000000       00


Q ss_pred             cccceecCCCCcCccchh---HHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844           91 SANHVELSPSDAGFQDRY---VVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~---~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                      ..+.+.+.....+.....   .+.+.++.+.     ...+..+|            ...+++++++||+ ..|+..+...
T Consensus       101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~  180 (271)
T PRK13632        101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE  180 (271)
T ss_pred             HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            000000000000000000   0112222211     00111111            1247899999998 8899999999


Q ss_pred             HHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +.+.+.+...  +..+|++|++.+.+ . ..+|+.+
T Consensus       181 l~~~l~~~~~~~~~tiii~sH~~~~~-~-~~d~v~~  214 (271)
T PRK13632        181 IKKIMVDLRKTRKKTLISITHDMDEA-I-LADKVIV  214 (271)
T ss_pred             HHHHHHHHHHhcCcEEEEEEechhHH-h-hCCEEEE
Confidence            9999987643  35777888877654 3 4566543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.79  E-value=3.5e-08  Score=85.82  Aligned_cols=155  Identities=18%  Similarity=0.304  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce----------------ecCCCcceec
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK----------------IDAGSRNIDL   84 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~----------------~~~~~~~~~~   84 (365)
                      +++.+...+..|..  +++.|++|+||||+++.+++ +..+..+.+.+++..+.                ++|+..-..-
T Consensus        19 ~l~~v~~~i~~Ge~--~~i~G~nGsGKSTL~~~l~G-Ll~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~   95 (235)
T COG1122          19 ALKDVSLEIEKGER--VLLIGPNGSGKSTLLKLLNG-LLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP   95 (235)
T ss_pred             eeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHcC-cCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence            33444444555555  99999999999999999998 77888888877775431                1111110000


Q ss_pred             cccccccccceecCCCCcCccchhHHHHHHHHHH---------hcCCCCCCCC------------CCceEEEEeCC-CCC
Q 017844           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA---------KNRPIDTKGK------------RGFKVLVLNEV-DKL  142 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~------------~~~~vliiDE~-~~L  142 (365)
                           +..+.+.+.+...+.... .+.+......         ...+..+|+.            -+++++++||+ -.|
T Consensus        96 -----tV~~evafg~~n~g~~~~-e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~L  169 (235)
T COG1122          96 -----TVEDEVAFGLENLGLPRE-EIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL  169 (235)
T ss_pred             -----cHHHHHhhchhhcCCCHH-HHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCC
Confidence                 000011122222222221 1222222211         1222233322            26789999998 789


Q ss_pred             CHHHHHHHHHHHhhhcCc--eeEEEEecCCCcccHHHhccceeEE
Q 017844          143 SREAQHSLRRTMEKYSAS--CRLILCCNSSSKVTEAIRSRCLNIR  185 (365)
Q Consensus       143 ~~~~~~~Ll~~le~~~~~--~~~Il~t~~~~~l~~~l~sR~~~i~  185 (365)
                      ++.....+++.+.+....  ..+|++|++.+. .....+|+.++.
T Consensus       170 D~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~-~~~~ad~v~vl~  213 (235)
T COG1122         170 DPKGRRELLELLKKLKEEGGKTIIIVTHDLEL-VLEYADRVVVLD  213 (235)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH-HHhhCCEEEEEE
Confidence            999999999999987654  467777776554 345567765444

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.78  E-value=2.7e-08  Score=87.01  Aligned_cols=53  Identities=11%  Similarity=0.218  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|+......+.+.|.+......+|++|++.+ ....+.+|+.
T Consensus       158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~  211 (227)
T cd03260         158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ-QAARVADRTA  211 (227)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHH-HHHHhCCEEE
Confidence            37899999998 78999999999999988755555666666654 3344555553

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=9.9e-09  Score=92.25  Aligned_cols=158  Identities=15%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceeccccccccc-c---
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTTLSSA-N---   93 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~-~---   93 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..+..|.+.+++..+.......   ...+  ...... .   
T Consensus        16 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~i--~~v~q~~~~~~   90 (271)
T PRK13638         16 VLKGLNLDFSLSPV--TGLVGANGCGKSTLFMNLSG-LLRPQKGAVLWQGKPLDYSKRGLLALRQQV--ATVFQDPEQQI   90 (271)
T ss_pred             cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHcC-CCCCCccEEEECCEEcccccCCHHHHHhhe--EEEeeChhhcc
Confidence            44444444555555  99999999999999999998 56777888887775431000000   0000  000000 0   


Q ss_pred             -------ceecCCCCcCccch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CCCCHH
Q 017844           94 -------HVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (365)
Q Consensus        94 -------~~~~~~~~~~~~~~---~~~~~~l~~~~-----~~~~~~~~~------------~~~~~vliiDE~-~~L~~~  145 (365)
                             .+.+.....+....   ..+.+.++.+.     ......+|+            ..+++++++||+ ..|+..
T Consensus        91 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~  170 (271)
T PRK13638         91 FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPA  170 (271)
T ss_pred             ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence                   00000000000000   01112222211     111111121            247899999998 789999


Q ss_pred             HHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       146 ~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ....+.+.|.+... +..+|+++++.+. ...+.+|+.++
T Consensus       171 ~~~~l~~~l~~~~~~g~tii~vtH~~~~-~~~~~d~i~~l  209 (271)
T PRK13638        171 GRTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVL  209 (271)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            99999999987643 4566677766553 34555665433

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.78  E-value=2.1e-08  Score=93.43  Aligned_cols=138  Identities=17%  Similarity=0.216  Sum_probs=77.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccc----------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD----------  106 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  106 (365)
                      +.|.||+|+||||+++++++ +..++.+.+.+++..+...+......      .....+.+.+++.....          
T Consensus        26 ~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~i~~~~~~~~~~------~~~~~i~~v~q~~~l~~~~tv~enl~~   98 (354)
T TIGR02142        26 TAIFGRSGSGKTTLIRLIAG-LTRPDEGEIVLNGRTLFDSRKGIFLP------PEKRRIGYVFQEARLFPHLSVRGNLRY   98 (354)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECccCccccccc------hhhCCeEEEecCCccCCCCcHHHHHHH
Confidence            89999999999999999999 56777888888776541110000000      00000111111111000          


Q ss_pred             ----------hhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc
Q 017844          107 ----------RYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus       107 ----------~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~  158 (365)
                                ...+.+.++.+.-     ..+..+|            ...+++++++||+ ..|+......+.+.|.+..
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~  178 (354)
T TIGR02142        99 GMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLH  178 (354)
T ss_pred             HhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence                      0012222222111     0111112            1237899999998 8899999999999998764


Q ss_pred             C--ceeEEEEecCCCcccHHHhccce
Q 017844          159 A--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       159 ~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .  +..+|++|++.+.+ ..+.+|+.
T Consensus       179 ~~~g~tiiivtH~~~~~-~~~~d~i~  203 (354)
T TIGR02142       179 AEFGIPILYVSHSLQEV-LRLADRVV  203 (354)
T ss_pred             HhcCCEEEEEecCHHHH-HHhCCEEE
Confidence            3  45677777776533 34455654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=2e-08  Score=90.38  Aligned_cols=159  Identities=15%  Similarity=0.236  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC----cceeccccc----c---
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT----L---   89 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~----~---   89 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++......+..    ....+....    +   
T Consensus        17 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~   93 (274)
T PRK13644         17 ALENINLVIKKGEY--IGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR   93 (274)
T ss_pred             eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence            34444444555555  99999999999999999999 5677888888887544110000    000000000    0   


Q ss_pred             ccccceecCCCCcCccc---hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844           90 SSANHVELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH  148 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~  148 (365)
                      +..+.+.+.....+...   ...+.+.++.+.     ...+..+|            ...+++++++||+ ..|++..+.
T Consensus        94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~  173 (274)
T PRK13644         94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI  173 (274)
T ss_pred             hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            00000000000000000   001112222111     01111111            1247899999998 889999999


Q ss_pred             HHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       149 ~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++.+.+... +..+|++|++.+.+ + ..+|+.++
T Consensus       174 ~l~~~l~~l~~~g~til~~tH~~~~~-~-~~d~v~~l  208 (274)
T PRK13644        174 AVLERIKKLHEKGKTIVYITHNLEEL-H-DADRIIVM  208 (274)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHHHH-h-hCCEEEEE
Confidence            99999987643 56777777777654 3 35665443

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.78  E-value=1.5e-08  Score=95.26  Aligned_cols=159  Identities=17%  Similarity=0.168  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-C--Ccceeccccc------ccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-G--SRNIDLELTT------LSS   91 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~--~~~~~~~~~~------~~~   91 (365)
                      +++.+...+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+ .  .+...+....      .+.
T Consensus        18 vL~~vs~~i~~Gei--v~liGpNGaGKSTLLk~LaG-ll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv   94 (402)
T PRK09536         18 VLDGVDLSVREGSL--VGLVGPNGAGKTTLLRAING-TLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV   94 (402)
T ss_pred             EEEeeEEEECCCCE--EEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCH
Confidence            34444444455555  89999999999999999999 56788888888875431100 0  0000000000      000


Q ss_pred             ccceecCCC----CcC---ccchhHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844           92 ANHVELSPS----DAG---FQDRYVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREA  146 (365)
Q Consensus        92 ~~~~~~~~~----~~~---~~~~~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~  146 (365)
                      .+.+.+...    ...   ..+...+.+.++.+...     ....+|            ...+++++++||+ ..|+...
T Consensus        95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~  174 (402)
T PRK09536         95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH  174 (402)
T ss_pred             HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence            000111000    000   00111122222221110     000111            1247899999998 8899999


Q ss_pred             HHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       147 ~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +..++++|.+... +..+|+++++.+ ....+.+|+..
T Consensus       175 ~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~  211 (402)
T PRK09536        175 QVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVL  211 (402)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence            9999999887653 445555555544 44556677643

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.77  E-value=2e-08  Score=93.90  Aligned_cols=154  Identities=14%  Similarity=0.250  Sum_probs=83.4

Q ss_pred             HHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceecccccc------cccccee
Q 017844           24 NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTTL------SSANHVE   96 (365)
Q Consensus        24 ~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~   96 (365)
                      .+...+..|..  +.|.||+|+||||++++|++ +..++.+.+.+++..+...|. .....+.+...      +..+.+.
T Consensus        32 ~vsl~i~~Ge~--~~LlGpsGsGKSTLLr~IaG-l~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~  108 (375)
T PRK09452         32 NLDLTINNGEF--LTLLGPSGCGKTTVLRLIAG-FETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVA  108 (375)
T ss_pred             eeEEEEeCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHH
Confidence            33334444554  89999999999999999999 667888888888866521111 11111100000      0000000


Q ss_pred             cCCCCcCccchhHHHHHHHHHHhc---------CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHH
Q 017844           97 LSPSDAGFQDRYVVQEVIKEMAKN---------RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTM  154 (365)
Q Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~l  154 (365)
                      +.....+. .....++.+..+...         .+..+|            ...+++++++||+ ..|+......+.+.|
T Consensus       109 ~~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L  187 (375)
T PRK09452        109 FGLRMQKT-PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL  187 (375)
T ss_pred             HHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            00000000 101111111111111         111112            1247899999998 789999999999988


Q ss_pred             hhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          155 EKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       155 e~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+...  +..+|++|++.... ..+.+|+.
T Consensus       188 ~~l~~~~g~tiI~vTHd~~ea-~~laDri~  216 (375)
T PRK09452        188 KALQRKLGITFVFVTHDQEEA-LTMSDRIV  216 (375)
T ss_pred             HHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence            87643  56788888876542 34456653

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.77  E-value=5.5e-09  Score=92.90  Aligned_cols=155  Identities=18%  Similarity=0.218  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc------ccccc
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT------LSSAN   93 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~   93 (365)
                      .+++.+...+..|..  +.|.||+|+|||||++.|++ +..++.+.+.+++... ... .....+....      .+..+
T Consensus        26 ~il~~isl~i~~Ge~--~~I~G~NGsGKSTLlk~l~G-l~~p~~G~i~~~g~~~-~~~-~~~i~~v~q~~~l~~~~tv~e  100 (257)
T PRK11247         26 TVLNQLDLHIPAGQF--VAVVGRSGCGKSTLLRLLAG-LETPSAGELLAGTAPL-AEA-REDTRLMFQDARLLPWKKVID  100 (257)
T ss_pred             ceeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEH-HHh-hCceEEEecCccCCCCCcHHH
Confidence            344444444455555  99999999999999999999 5566777776655322 000 0000000000      00000


Q ss_pred             ceecCCCCcCccchhHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHh
Q 017844           94 HVELSPSDAGFQDRYVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (365)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le  155 (365)
                      .+.+...  . .....+.+.++.+.-     ..+..+|            ...+++++++||+ ..|+......+.+.|.
T Consensus       101 nl~~~~~--~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~  177 (257)
T PRK11247        101 NVGLGLK--G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE  177 (257)
T ss_pred             HHHhccc--c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            0000000  0 001112222222111     0111111            1236799999998 8899999999999988


Q ss_pred             hhc--CceeEEEEecCCCcccHHHhcccee
Q 017844          156 KYS--ASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       156 ~~~--~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +..  .+..+|++|++.+. ...+.+|+..
T Consensus       178 ~~~~~~~~tviivsHd~~~-~~~~~d~i~~  206 (257)
T PRK11247        178 SLWQQHGFTVLLVTHDVSE-AVAMADRVLL  206 (257)
T ss_pred             HHHHHcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            752  24567777777653 3445566543

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.77  E-value=2.9e-08  Score=84.64  Aligned_cols=53  Identities=17%  Similarity=0.305  Sum_probs=43.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc---CceeEEEEecCCCcccHHHhccc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS---ASCRLILCCNSSSKVTEAIRSRC  181 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~---~~~~~Il~t~~~~~l~~~l~sR~  181 (365)
                      .++.++|+||+ ..|+..+.+.|++.+++..   ....++++|++.+.+++-+-.+.
T Consensus       188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l  244 (257)
T COG1119         188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL  244 (257)
T ss_pred             cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence            47889999997 8999999999999998753   35679999999998887664443

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.77  E-value=1.7e-08  Score=93.94  Aligned_cols=139  Identities=14%  Similarity=0.212  Sum_probs=78.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh--------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--------  108 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  108 (365)
                      +.|.||+|+||||++++|++ +..++.+.+.+++..+.......  ..    ......+.+..++.......        
T Consensus        27 ~~l~G~nGsGKSTLl~~iaG-l~~p~~G~I~~~g~~~~~~~~~~--~~----~~~~~~i~~v~q~~~l~~~~tv~enl~~   99 (352)
T PRK11144         27 TAIFGRSGAGKTSLINAISG-LTRPQKGRIVLNGRVLFDAEKGI--CL----PPEKRRIGYVFQDARLFPHYKVRGNLRY   99 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEEcccccccc--cc----chhhCCEEEEcCCcccCCCCcHHHHHHh
Confidence            89999999999999999999 56777888888775541000000  00    00001122222221111111        


Q ss_pred             --------HHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--c
Q 017844          109 --------VVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--S  160 (365)
Q Consensus       109 --------~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~  160 (365)
                              .+.+.++.+.-     ..+..+|            ...+++++++||+ ..|+......+.+.|.+...  +
T Consensus       100 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g  179 (352)
T PRK11144        100 GMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN  179 (352)
T ss_pred             hhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence                    12222222110     0111111            1247899999998 78999999999988887643  4


Q ss_pred             eeEEEEecCCCcccHHHhcccee
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ..+|++|++.+.+ ..+.+|+.+
T Consensus       180 ~tii~vTHd~~~~-~~~~d~i~~  201 (352)
T PRK11144        180 IPILYVSHSLDEI-LRLADRVVV  201 (352)
T ss_pred             CeEEEEecCHHHH-HHhCCEEEE
Confidence            5678888776533 345556543

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.76  E-value=6.7e-09  Score=103.82  Aligned_cols=139  Identities=20%  Similarity=0.315  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCC
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (365)
                      .+++.+.-.++.|+.  +.+.|++||||||++|.+.+ ++.|..|.+.+++.+.+ .-         ....-.+.+.+++
T Consensus       487 ~vL~~isL~I~~Ge~--vaIvG~SGsGKSTL~KLL~g-ly~p~~G~I~~dg~dl~-~i---------~~~~lR~~ig~V~  553 (709)
T COG2274         487 PVLEDLSLEIPPGEK--VAIVGRSGSGKSTLLKLLLG-LYKPQQGRILLDGVDLN-DI---------DLASLRRQVGYVL  553 (709)
T ss_pred             chhhceeEEeCCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEeHH-hc---------CHHHHHhheeEEc
Confidence            567777667777766  99999999999999999999 88999999999987651 00         0001111233333


Q ss_pred             CCcCccchhHHH-------------HHHHH--------HHhcCCC-----------CCCC------------CCCceEEE
Q 017844          100 SDAGFQDRYVVQ-------------EVIKE--------MAKNRPI-----------DTKG------------KRGFKVLV  135 (365)
Q Consensus       100 ~~~~~~~~~~~~-------------~~l~~--------~~~~~~~-----------~~~~------------~~~~~vli  135 (365)
                      ++.....+ +++             +++..        +....|.           .+|+            -.+++|++
T Consensus       554 Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILl  632 (709)
T COG2274         554 QDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILL  632 (709)
T ss_pred             ccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEE
Confidence            33211110 111             11111        1111111           1121            24789999


Q ss_pred             EeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          136 LNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       136 iDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      +||+ ..|+++....+.+.|.+...+..+|++|++...
T Consensus       633 LDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~t  670 (709)
T COG2274         633 LDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST  670 (709)
T ss_pred             EeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchH
Confidence            9999 889999999999999998888889999998763

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.76  E-value=2e-08  Score=88.27  Aligned_cols=54  Identities=17%  Similarity=0.318  Sum_probs=41.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+.+ +. .+|+..+
T Consensus       155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~v~~l  209 (234)
T cd03251         155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTI-EN-ADRIVVL  209 (234)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-hh-CCEEEEe
Confidence            47889999998 8899999999999998876566788888777654 33 5565443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.76  E-value=2.3e-08  Score=88.32  Aligned_cols=55  Identities=11%  Similarity=0.223  Sum_probs=41.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+...+..+.+.+.+......+|++|++.+ ..+.+.+|+.++
T Consensus       160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~~~~~d~i~~l  215 (242)
T TIGR03411       160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME-FVRSIADKVTVL  215 (242)
T ss_pred             cCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence            47899999998 78999999999999988765566777777655 344555666433

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.76  E-value=2.4e-08  Score=89.10  Aligned_cols=55  Identities=15%  Similarity=0.240  Sum_probs=40.5

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|++|++.+ ..+.+.+|+.++
T Consensus       169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l  225 (257)
T PRK10619        169 MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL  225 (257)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence            37889999998 78999999999999887643 456666666654 345566676544

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.76  E-value=3.3e-08  Score=79.19  Aligned_cols=46  Identities=22%  Similarity=0.398  Sum_probs=37.6

Q ss_pred             HHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        25 l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      +...+..|..  +.++||+||||||+.+.+|. +..++.+.+.+.|..+
T Consensus        22 isl~v~~Ge~--iaitGPSG~GKStllk~va~-Lisp~~G~l~f~Ge~v   67 (223)
T COG4619          22 ISLSVRAGEF--IAITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDV   67 (223)
T ss_pred             eeeeecCCce--EEEeCCCCccHHHHHHHHHh-ccCCCCceEEEcCccc
Confidence            3334445555  89999999999999999998 7889999999888766

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.76  E-value=1.4e-08  Score=90.28  Aligned_cols=55  Identities=13%  Similarity=0.145  Sum_probs=40.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+...+..+|+++++.+. ...+.+|+..+
T Consensus       163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~-~~~~~d~i~~l  218 (250)
T PRK14247        163 FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQ-AARISDYVAFL  218 (250)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEE
Confidence            47899999998 789999999999999887555667777776553 34455665443

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.75  E-value=2.9e-08  Score=88.31  Aligned_cols=55  Identities=15%  Similarity=0.211  Sum_probs=40.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|++|++.+.+ ..+.+|+.++
T Consensus       163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~-~~~~d~i~~l  220 (252)
T TIGR03005       163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA-REFADRVCFF  220 (252)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH-HHhcCEEEEE
Confidence            47899999998 78999999999999987643  46677777776533 4455665433

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=2.7e-08  Score=89.53  Aligned_cols=158  Identities=19%  Similarity=0.309  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceeccccc-------cc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTT-------LS   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~-------~~   90 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+...+..   ....+.+..       .+
T Consensus        20 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t   96 (274)
T PRK13647         20 ALKGLSLSIPEGSK--TALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST   96 (274)
T ss_pred             eeeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence            44444444555655  99999999999999999998 5677888888877544100000   000000000       00


Q ss_pred             cccceecCCCCcCccch---hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844           91 SANHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                      ..+.+.+.....+....   ..+.+.++.+.     ...+..+|            ...+++++++||+ ..|+......
T Consensus        97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~  176 (274)
T PRK13647         97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET  176 (274)
T ss_pred             HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence            00000000000000000   01122222111     00111111            1247899999998 7899999999


Q ss_pred             HHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          150 LRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       150 Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      +++.+.+... +..+|++|++.+. ...+.+|+.
T Consensus       177 l~~~l~~~~~~g~tili~tH~~~~-~~~~~d~i~  209 (274)
T PRK13647        177 LMEILDRLHNQGKTVIVATHDVDL-AAEWADQVI  209 (274)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEE
Confidence            9999987643 4567777776553 344566654

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.74  E-value=1.2e-09  Score=89.97  Aligned_cols=161  Identities=15%  Similarity=0.228  Sum_probs=102.6

Q ss_pred             CccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc
Q 017844           13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA   92 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (365)
                      .+-++...+++.+.-.+.+|..  +.+.||+|.||||.-..+.+ +..++.+.+.+++.++..-|-...         +.
T Consensus        11 ~K~y~kr~Vv~~Vsl~v~~GEi--VGLLGPNGAGKTT~Fymi~G-lv~~d~G~i~ld~~diT~lPm~~R---------Ar   78 (243)
T COG1137          11 AKSYKKRKVVNDVSLEVNSGEI--VGLLGPNGAGKTTTFYMIVG-LVRPDSGKILLDDEDITKLPMHKR---------AR   78 (243)
T ss_pred             hHhhCCeeeeeeeeEEEcCCcE--EEEECCCCCCceeEEEEEEE-EEecCCceEEECCcccccCChHHH---------hh
Confidence            3334445555555555666766  89999999999999988887 778899999888876633332221         11


Q ss_pred             cceecCCCCcCccchhHHHHHHHHHHhc-----------------------------CCCCCCC------------CCCc
Q 017844           93 NHVELSPSDAGFQDRYVVQEVIKEMAKN-----------------------------RPIDTKG------------KRGF  131 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------~~~~~~~------------~~~~  131 (365)
                      --+.|.+++...+.+.++++.+..+.+.                             ...++|+            ..+|
T Consensus        79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P  158 (243)
T COG1137          79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP  158 (243)
T ss_pred             cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence            1245566665555444444443322111                             1112222            2378


Q ss_pred             eEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEE
Q 017844          132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (365)
Q Consensus       132 ~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~  185 (365)
                      +.+++||+ -.+++-+...+.+++........=|++|.+.-+-.-.+.+|+.++.
T Consensus       159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~  213 (243)
T COG1137         159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIIS  213 (243)
T ss_pred             CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEe
Confidence            89999997 7788888877888887776677777777766543345677876544

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.74  E-value=1.6e-08  Score=90.70  Aligned_cols=158  Identities=15%  Similarity=0.184  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc-ceecccccccccc------
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLSSAN------   93 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~------   93 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+... ...+  .......      
T Consensus        28 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i--~~v~q~~~~~~~~  102 (267)
T PRK15112         28 AVKPLSFTLREGQT--LAIIGENGSGKSTLAKMLAG-MIEPTSGELLIDDHPLHFGDYSYRSQRI--RMIFQDPSTSLNP  102 (267)
T ss_pred             eeeeeeEEecCCCE--EEEEcCCCCCHHHHHHHHhC-CCCCCCCEEEECCEECCCCchhhHhccE--EEEecCchhhcCc
Confidence            44555445555655  99999999999999999999 56777888877765431000000 0000  0000000      


Q ss_pred             ------ceecCCC-CcCccc---hhHHHHHHHHHHh------cCCCCCC------------CCCCceEEEEeCC-CCCCH
Q 017844           94 ------HVELSPS-DAGFQD---RYVVQEVIKEMAK------NRPIDTK------------GKRGFKVLVLNEV-DKLSR  144 (365)
Q Consensus        94 ------~~~~~~~-~~~~~~---~~~~~~~l~~~~~------~~~~~~~------------~~~~~~vliiDE~-~~L~~  144 (365)
                            .+.+... ......   ...+.+.++.+.-      .....+|            ...+++++++||+ ..|++
T Consensus       103 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~  182 (267)
T PRK15112        103 RQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDM  182 (267)
T ss_pred             chhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCH
Confidence                  0000000 000000   0012222222211      0001111            1237899999998 78999


Q ss_pred             HHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       145 ~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .....+.+.|.+...  +..+|++|++.+. ...+.+|+.++
T Consensus       183 ~~~~~l~~~l~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l  223 (267)
T PRK15112        183 SMRSQLINLMLELQEKQGISYIYVTQHLGM-MKHISDQVLVM  223 (267)
T ss_pred             HHHHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhcCEEEEE
Confidence            999999999987642  4567777776553 34455665443

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=2.4e-08  Score=90.12  Aligned_cols=159  Identities=16%  Similarity=0.242  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceeccccc-------cc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTT-------LS   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~-------~~   90 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++......+..   ....+.+..       .+
T Consensus        22 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t   98 (279)
T PRK13650         22 TLNDVSFHVKQGEW--LSIIGHNGSGKSTTVRLIDG-LLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT   98 (279)
T ss_pred             eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence            33444334445554  99999999999999999998 5678888888877544100000   000000000       00


Q ss_pred             cccceecCCCCcCccch---hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844           91 SANHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                      ..+.+.+.....+....   ..+.+.++.+.     ...+..+|            ...+++++++||+ ..|+......
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~  178 (279)
T PRK13650         99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE  178 (279)
T ss_pred             HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence            00001110000011100   01122222211     11111122            1247899999998 8899999999


Q ss_pred             HHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      +.+.+.+...  +..+|++|++.+.+ . ..+|+.++
T Consensus       179 l~~~l~~l~~~~g~tilivtH~~~~~-~-~~dri~~l  213 (279)
T PRK13650        179 LIKTIKGIRDDYQMTVISITHDLDEV-A-LSDRVLVM  213 (279)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence            9999987643  56788888877654 3 46666443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.74  E-value=3.4e-08  Score=86.21  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=37.0

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSR  180 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR  180 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|+++++ ......+.+|
T Consensus       166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~-~~~~~~~~d~  218 (224)
T TIGR02324       166 ADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD-EEVRELVADR  218 (224)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcce
Confidence            36789999998 88999999999999987643 4567777766 3333334444

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.74  E-value=3.1e-08  Score=87.46  Aligned_cols=157  Identities=15%  Similarity=0.175  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceecccccccc-c------
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTTLSS-A------   92 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~-~------   92 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+ ......+  ..... .      
T Consensus        18 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~i--~~~~q~~~~~~~t   92 (241)
T PRK14250         18 ILKDISVKFEGGAI--YTIVGPSGAGKSTLIKLINR-LIDPTEGSILIDGVDIKTIDVIDLRRKI--GMVFQQPHLFEGT   92 (241)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEhhhcChHHhhhcE--EEEecCchhchhh
Confidence            34444444445544  89999999999999999999 55778888887775431100 0000000  00000 0      


Q ss_pred             --cceecCCCCcCccchhHHHHHHHHHHh------cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844           93 --NHVELSPSDAGFQDRYVVQEVIKEMAK------NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLR  151 (365)
Q Consensus        93 --~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll  151 (365)
                        +.+.+... ........+.+.++.+.-      ..+..+|            ...+++++++||+ ..|+......+.
T Consensus        93 v~e~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~  171 (241)
T PRK14250         93 VKDNIEYGPM-LKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE  171 (241)
T ss_pred             HHHHHhcchh-hcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence              00000000 000001112223322211      1111111            1247899999998 789999999999


Q ss_pred             HHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          152 RTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       152 ~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      +.+.+...  +..+|++|++.+. ...+.+|+.++
T Consensus       172 ~~l~~~~~~~g~tii~~sH~~~~-~~~~~d~i~~l  205 (241)
T PRK14250        172 ELIVKLKNKMNLTVIWITHNMEQ-AKRIGDYTAFL  205 (241)
T ss_pred             HHHHHHHHhCCCEEEEEeccHHH-HHHhCCEEEEE
Confidence            98887642  4567777776653 34555666443

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.74  E-value=3.9e-08  Score=85.59  Aligned_cols=54  Identities=13%  Similarity=0.346  Sum_probs=39.9

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+...+..+.+.+.+...  +..+|+++++.+ + ..+.+++.++
T Consensus       158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~-~~~~d~v~~l  214 (220)
T TIGR02982       158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-I-LDVADRIVHM  214 (220)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H-HhhCCEEEEE
Confidence            47899999998 78999999999999987643  567778887764 3 2455554433

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=3.1e-08  Score=92.78  Aligned_cols=151  Identities=13%  Similarity=0.196  Sum_probs=79.6

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceecccccc------ccccceecCCC
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTTL------SSANHVELSPS  100 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~  100 (365)
                      .+..|..  +.|.||+|+||||++++|++ +..++.+.+.+++..+...| ..+...+.+...      +..+.+.+...
T Consensus        41 ~i~~Ge~--~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~  117 (377)
T PRK11607         41 TIYKGEI--FALLGASGCGKSTLLRMLAG-FEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLK  117 (377)
T ss_pred             EEcCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence            3444544  89999999999999999998 67888888888876541111 111111100000      00000111000


Q ss_pred             CcCccchhHHHHHHHHHHhcCCC---------CCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc
Q 017844          101 DAGFQDRYVVQEVIKEMAKNRPI---------DTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus       101 ~~~~~~~~~~~~~l~~~~~~~~~---------~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~  158 (365)
                      ..+ ......++.+..+.....+         .+|            ...+++++++||+ ..|+......+...+.+..
T Consensus       118 ~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  196 (377)
T PRK11607        118 QDK-LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL  196 (377)
T ss_pred             HcC-CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            000 0111111111111111111         111            1247899999998 7899988887776665542


Q ss_pred             --CceeEEEEecCCCcccHHHhcccee
Q 017844          159 --ASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       159 --~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                        .+..+|++|++.+.. ..+-+|+.+
T Consensus       197 ~~~g~tii~vTHd~~ea-~~laDri~v  222 (377)
T PRK11607        197 ERVGVTCVMVTHDQEEA-MTMAGRIAI  222 (377)
T ss_pred             HhcCCEEEEEcCCHHHH-HHhCCEEEE
Confidence              246788888776632 345566543

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.74  E-value=3.7e-08  Score=91.54  Aligned_cols=152  Identities=13%  Similarity=0.219  Sum_probs=82.6

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec-CCCcceeccccc------cccccceecCCC
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID-AGSRNIDLELTT------LSSANHVELSPS  100 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~  100 (365)
                      .+..|..  +.|.||+|+|||||+++|++ +..++.+.+.+++...... +..+...+.+..      .+..+.+.+...
T Consensus        24 ~i~~Ge~--~~llGpsGsGKSTLLr~IaG-l~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~  100 (353)
T PRK10851         24 DIPSGQM--VALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLT  100 (353)
T ss_pred             EEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhh
Confidence            3445554  89999999999999999999 6678888888887654111 111111110000      000000111100


Q ss_pred             Cc---Cccch----hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHh
Q 017844          101 DA---GFQDR----YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (365)
Q Consensus       101 ~~---~~~~~----~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le  155 (365)
                      ..   .....    ..+.+.++.+.-     ..+..+|            ...+++++++||+ ..|+......+.+.|.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~  180 (353)
T PRK10851        101 VLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR  180 (353)
T ss_pred             hcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            00   00010    112222222211     1111111            1247899999998 8899999999999998


Q ss_pred             hhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          156 KYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       156 ~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +...  +..+|++|++.... ..+.+|+.+
T Consensus       181 ~l~~~~g~tii~vTHd~~ea-~~~~Dri~v  209 (353)
T PRK10851        181 QLHEELKFTSVFVTHDQEEA-MEVADRVVV  209 (353)
T ss_pred             HHHHhcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence            7643  45677777776533 345566543

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=2.5e-08  Score=89.58  Aligned_cols=155  Identities=14%  Similarity=0.166  Sum_probs=82.2

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc-ceeccccccc-ccc--ce--
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLELTTLS-SAN--HV--   95 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~--   95 (365)
                      ++.+.-.+..|..  +.|.||+|+|||||+++|++ +..+..|.+.+++......+... ...+  .... ...  +.  
T Consensus        25 l~~isl~i~~Ge~--~~I~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i--~~v~q~~~~~~~~~   99 (269)
T PRK13648         25 LKDVSFNIPKGQW--TSIVGHNGSGKSTIAKLMIG-IEKVKSGEIFYNNQAITDDNFEKLRKHI--GIVFQNPDNQFVGS   99 (269)
T ss_pred             eeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHHhhe--eEEEeChHHhcccc
Confidence            3444334444544  89999999999999999999 56777888888775431100000 0000  0000 000  00  


Q ss_pred             ------ecCCCCcCccch---hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844           96 ------ELSPSDAGFQDR---YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH  148 (365)
Q Consensus        96 ------~~~~~~~~~~~~---~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~  148 (365)
                            .+.....+....   ..+.+.++.+..     ..+..+|            ...+++++++||+ ..|+.....
T Consensus       100 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~  179 (269)
T PRK13648        100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ  179 (269)
T ss_pred             cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence                  000000000000   011122222110     0111111            1237799999998 889999999


Q ss_pred             HHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       149 ~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+.+.+.+...  +..+|++|++.+.+. . .+|+.+
T Consensus       180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~-~-~d~i~~  214 (269)
T PRK13648        180 NLLDLVRKVKSEHNITIISITHDLSEAM-E-ADHVIV  214 (269)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCchHHh-c-CCEEEE
Confidence            99999987643  467788888776543 2 566543

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=4.6e-08  Score=87.15  Aligned_cols=55  Identities=15%  Similarity=0.210  Sum_probs=40.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.|.+...  +..+|++|++.+. ...+.+|+.++
T Consensus       170 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l  227 (255)
T PRK11300        170 TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL-VMGISDRIYVV  227 (255)
T ss_pred             cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            47899999998 88999999999999987643  4567777776553 34455665433

>PRK04132 replication factor C small subunit; Provisional

Probab=98.73  E-value=5.6e-09  Score=105.43  Aligned_cols=49  Identities=47%  Similarity=0.899  Sum_probs=46.8

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHH
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTL   50 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtl   50 (365)
                      +|++||||++|+|++||+.+++.|+.+++.++.+|++|+||||+||+..
T Consensus         8 ~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~   56 (846)
T PRK04132          8 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT   56 (846)
T ss_pred             cHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence            7999999999999999999999999999999999988999999999643

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.73  E-value=7.9e-08  Score=83.62  Aligned_cols=140  Identities=21%  Similarity=0.246  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      ++..+...+..|..  +.+.|++||||||+++.+.+ |..++.|.+.+++..+             ..+.          
T Consensus        28 avd~Vsf~i~~ge~--~glVGESG~GKSTlgr~i~~-L~~pt~G~i~f~g~~i-------------~~~~----------   81 (268)
T COG4608          28 AVDGVSFSIKEGET--LGLVGESGCGKSTLGRLILG-LEEPTSGEILFEGKDI-------------TKLS----------   81 (268)
T ss_pred             EecceeEEEcCCCE--EEEEecCCCCHHHHHHHHHc-CcCCCCceEEEcCcch-------------hhcc----------
Confidence            34444455566666  89999999999999999998 8899999999888654             0000          


Q ss_pred             CcCccchhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--C
Q 017844          101 DAGFQDRYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--A  159 (365)
Q Consensus       101 ~~~~~~~~~~~~~l~~~~------~~~~~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~  159 (365)
                        .......+.+.+..+.      ...+..+++            .-++++++.||+ .+|+...|...+++|.+..  .
T Consensus        82 --~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~  159 (268)
T COG4608          82 --KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL  159 (268)
T ss_pred             --hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHh
Confidence              0000001112221111      111111111            236789999998 7788888888888887653  3


Q ss_pred             ceeEEEEecCCCcccHHHhccceeEEecCC
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSP  189 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~  189 (365)
                      +...+|++++.. ....+.+|..+......
T Consensus       160 ~lt~lFIsHDL~-vv~~isdri~VMy~G~i  188 (268)
T COG4608         160 GLTYLFISHDLS-VVRYISDRIAVMYLGKI  188 (268)
T ss_pred             CCeEEEEEEEHH-hhhhhcccEEEEecCce
Confidence            578889988765 33455667655555443

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.72  E-value=3.4e-08  Score=88.06  Aligned_cols=160  Identities=18%  Similarity=0.172  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceeccccc------ccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTT------LSS   91 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~------~~~   91 (365)
                      +++.+.-.+..|..  +.|.||+|+||||++++|++ +..+..+.+.+++......+...   ...+....      .+.
T Consensus        16 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (256)
T TIGR03873        16 IVDGVDVTAPPGSL--TGLLGPNGSGKSTLLRLLAG-ALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV   92 (256)
T ss_pred             EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence            34444444445554  89999999999999999999 55777788877775431101000   00000000      000


Q ss_pred             ccceecCCC---C-cCcc---chhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844           92 ANHVELSPS---D-AGFQ---DRYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREA  146 (365)
Q Consensus        92 ~~~~~~~~~---~-~~~~---~~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~  146 (365)
                      .+.+.+...   . ....   ....+.+.++.+.     ......+|            ...+++++++||+ ..|+...
T Consensus        93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  172 (256)
T TIGR03873        93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA  172 (256)
T ss_pred             HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence            000100000   0 0000   0001222222211     11111111            1237799999998 7899999


Q ss_pred             HHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       147 ~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ...+.+.|.+... +..+|+++++.+. ...+.+|+.++
T Consensus       173 ~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l  210 (256)
T TIGR03873       173 QLETLALVRELAATGVTVVAALHDLNL-AASYCDHVVVL  210 (256)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            9999999987643 4567777776653 34555665433

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=2.6e-08  Score=88.72  Aligned_cols=55  Identities=15%  Similarity=0.158  Sum_probs=40.0

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+..+...+.+.|.+... +..+|++|++.+ ....+.+|+.++
T Consensus       155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l  211 (255)
T PRK11231        155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVL  211 (255)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEE
Confidence            47899999998 88999999999999987643 456777776655 334455665433

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=3.7e-08  Score=88.99  Aligned_cols=54  Identities=17%  Similarity=0.159  Sum_probs=39.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|++.....+.+.|.+... +..+|++|++.+ ....+.+|+.+
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~  217 (280)
T PRK13649        162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYV  217 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEE
Confidence            37799999998 78999999999999887643 456677776654 33445566543

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.72  E-value=9.8e-08  Score=80.33  Aligned_cols=143  Identities=13%  Similarity=0.194  Sum_probs=76.6

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee-cCCCcceeccccccc-cccceecC---CCCc
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-DAGSRNIDLELTTLS-SANHVELS---PSDA  102 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~---~~~~  102 (365)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++.+... .+......+  .... .-..+.+.   ....
T Consensus        21 ~i~~G~~--~~l~G~nGsGKStLl~~i~G-~~~~~~G~v~~~g~~~~~~~~~~~~~~i--~~~~q~l~~~gl~~~~~~~~   95 (180)
T cd03214          21 SIEAGEI--VGILGPNGAGKSTLLKTLAG-LLKPSSGEILLDGKDLASLSPKELARKI--AYVPQALELLGLAHLADRPF   95 (180)
T ss_pred             EECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCcCCHHHHHHHH--hHHHHHHHHcCCHhHhcCCc
Confidence            3344444  89999999999999999998 556777877777644300 000000000  0000 00000000   0000


Q ss_pred             CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhc
Q 017844          103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRS  179 (365)
Q Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~s  179 (365)
                      ........ +.+. ++.  .    ...+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+. ...+.+
T Consensus        96 ~~LS~G~~-qrl~-lar--a----l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d  166 (180)
T cd03214          96 NELSGGER-QRVL-LAR--A----LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL-AARYAD  166 (180)
T ss_pred             ccCCHHHH-HHHH-HHH--H----HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCC
Confidence            00010000 0000 010  0    1246689999998 78999999999999987644  4567777766553 334556


Q ss_pred             cceeE
Q 017844          180 RCLNI  184 (365)
Q Consensus       180 R~~~i  184 (365)
                      |+..+
T Consensus       167 ~~~~l  171 (180)
T cd03214         167 RVILL  171 (180)
T ss_pred             EEEEE
Confidence            65444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.72  E-value=8.6e-08  Score=76.30  Aligned_cols=68  Identities=15%  Similarity=0.214  Sum_probs=40.2

Q ss_pred             ceEEEEeCCCCCC---HHHHHHHHHHHhhhcCceeEEEEecCCC--cccHHHhccceeEEecCCCHHHHHHHHHHHHH
Q 017844          131 FKVLVLNEVDKLS---REAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK  203 (365)
Q Consensus       131 ~~vliiDE~~~L~---~~~~~~Ll~~le~~~~~~~~Il~t~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~  203 (365)
                      .+++||||+..|-   +....++-.+|+.   ...+|.+-+..+  .+...++++...+.|  ++++..-.++.+++.
T Consensus       101 aDvIIIDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~P~v~~ik~~~~v~v~--lt~~NR~~i~~~Il~  173 (179)
T COG1618         101 ADVIIIDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRHPLVQRIKKLGGVYVF--LTPENRNRILNEILS  173 (179)
T ss_pred             CCEEEEecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCChHHHHhhhcCCEEEE--EccchhhHHHHHHHH
Confidence            4899999997764   3444444444443   233555555443  466778888776665  444444455555544

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.72  E-value=4.8e-08  Score=91.24  Aligned_cols=53  Identities=15%  Similarity=0.216  Sum_probs=39.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++|+++||+ ..|++.....+.+.|.+...  +..+|++|++.+.+ ..+.+|+.
T Consensus       181 ~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~-~~l~DrI~  236 (382)
T TIGR03415       181 MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEA-LKIGNRIA  236 (382)
T ss_pred             cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence            47899999998 88999999988888877543  46678888776633 34556653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.72  E-value=3.6e-08  Score=86.90  Aligned_cols=52  Identities=17%  Similarity=0.257  Sum_probs=40.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|+......+.+.|.+...+..+|++|++.+.+ . ..+|+.
T Consensus       156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~-~-~~d~v~  208 (238)
T cd03249         156 RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTI-R-NADLIA  208 (238)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-h-hCCEEE
Confidence            47799999998 7899999999999998775456678888776644 3 456653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.72  E-value=8.2e-09  Score=101.02  Aligned_cols=158  Identities=15%  Similarity=0.141  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC----Ccceeccccc------cc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLELTT------LS   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~------~~   90 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..++.+.+.+++..+...+.    .....+.+..      .+
T Consensus        19 ~l~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~l~G-~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (501)
T PRK10762         19 ALSGAALNVYPGRV--MALVGENGAGKSTMMKVLTG-IYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT   95 (501)
T ss_pred             EeeeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence            44444445555555  89999999999999999999 557778888887754311000    0001110000      00


Q ss_pred             cccceecCCCC---cCccch----hHHHHHHHHHHhcC----C-CCCC------------CCCCceEEEEeCC-CCCCHH
Q 017844           91 SANHVELSPSD---AGFQDR----YVVQEVIKEMAKNR----P-IDTK------------GKRGFKVLVLNEV-DKLSRE  145 (365)
Q Consensus        91 ~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~----~-~~~~------------~~~~~~vliiDE~-~~L~~~  145 (365)
                      ..+.+.+....   .+..+.    ..+.+.++.+.-..    + ..+|            ...+++++++||+ ..|++.
T Consensus        96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~  175 (501)
T PRK10762         96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT  175 (501)
T ss_pred             HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence            00111110000   000011    11222232221100    0 0111            1247899999998 889999


Q ss_pred             HHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          146 AQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       146 ~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ....+.+.+.+... +..+|++|++.+ ....+.+|+.
T Consensus       176 ~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~  212 (501)
T PRK10762        176 ETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVT  212 (501)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEE
Confidence            99999988887643 345666666654 3345556653

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=98.71  E-value=6.4e-07  Score=88.00  Aligned_cols=193  Identities=13%  Similarity=0.147  Sum_probs=113.0

Q ss_pred             CHHHHHHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee
Q 017844           18 HQDIAQNLKKLVTEQ-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE   96 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (365)
                      |++++..+.-..-.. .+..++|.|+.|+||||+++.++..+ ...        ..| ..                  +.
T Consensus         8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~ll-p~~--------~p~-r~------------------~p   59 (584)
T PRK13406          8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALL-PAG--------TPL-RR------------------LP   59 (584)
T ss_pred             HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhc-CCC--------CCc-cc------------------CC
Confidence            555555544333333 55669999999999999999999844 221        011 00                  00


Q ss_pred             cCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcC-----------ceeEEE
Q 017844           97 LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSA-----------SCRLIL  165 (365)
Q Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~-----------~~~~Il  165 (365)
                      ...++........+...+..-.....-+.-...+..|++|||+..+++..++.|++.|++...           ...|++
T Consensus        60 ~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~L  139 (584)
T PRK13406         60 PGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGL  139 (584)
T ss_pred             CCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEE
Confidence            111111111111122222211110000111234557999999999999999999999986321           124666


Q ss_pred             EecCCC-----cccHHHhccce-eEEecCCCHHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHHcC--C--CHHHH
Q 017844          166 CCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIV-------KVLEFIAKKEGLQLPSGFATRLAEKSN--R--SLRRA  228 (365)
Q Consensus       166 ~t~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~-------~iL~~~~~~~~~~i~~~~~~~i~~~~~--g--~lr~a  228 (365)
                      +++...     .+.+++.+||. .+.+..++..+..       ++...+..-.++.++++.++++++.+.  |  +.|..
T Consensus       140 Iat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~  219 (584)
T PRK13406        140 VALDEGAEEDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAP  219 (584)
T ss_pred             EecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHH
Confidence            665333     38899999995 7888887766532       233322222478899999998877432  2  67877


Q ss_pred             HHHHHHHHhc
Q 017844          229 ILSFETCRVQ  238 (365)
Q Consensus       229 i~~l~~~~~~  238 (365)
                      +.++..+...
T Consensus       220 i~llraARa~  229 (584)
T PRK13406        220 LLALRAARAA  229 (584)
T ss_pred             HHHHHHHHHH
Confidence            7777654333

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.71  E-value=3e-08  Score=85.45  Aligned_cols=153  Identities=13%  Similarity=0.189  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC---Ccceecccc-----ccccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLELT-----TLSSA   92 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~-----~~~~~   92 (365)
                      +++.+.-.+..|..  +.+.||+|+|||||++++++ +..+..+.+.+++......+.   .....+...     ..+..
T Consensus        23 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~   99 (207)
T cd03369          23 VLKNVSFKVKAGEK--IGIVGRTGAGKSTLILALFR-FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR   99 (207)
T ss_pred             cccCceEEECCCCE--EEEECCCCCCHHHHHHHHhc-ccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHH
Confidence            34444444444544  99999999999999999999 556777777777643310000   000000000     00000


Q ss_pred             cceecCCCCcCccchhHHHHHHHHHHhcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC
Q 017844           93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~  159 (365)
                      +.+.+.    .......+.+.++ + ......+|            ...+++++++||+ ..|+......+.+.|.+...
T Consensus       100 ~~l~~~----~~~~~~~~~~~l~-~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~  173 (207)
T cd03369         100 SNLDPF----DEYSDEEIYGALR-V-SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT  173 (207)
T ss_pred             HHhccc----CCCCHHHHHHHhh-c-cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC
Confidence            000000    0001111122222 1 01111111            1247799999998 78999999999999988755


Q ss_pred             ceeEEEEecCCCcccHHHhccceeE
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      +..+|++|++.+.+ .. .+|+..+
T Consensus       174 ~~tiii~th~~~~~-~~-~d~v~~l  196 (207)
T cd03369         174 NSTILTIAHRLRTI-ID-YDKILVM  196 (207)
T ss_pred             CCEEEEEeCCHHHH-hh-CCEEEEE
Confidence            66778888876644 22 3555433

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.71  E-value=1.5e-08  Score=90.86  Aligned_cols=50  Identities=24%  Similarity=0.350  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..+..|.+.+++...
T Consensus        26 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i   75 (265)
T TIGR02769        26 VLTNVSLSIEEGET--VGLLGRSGCGKSTLARLLLG-LEKPAQGTVSFRGQDL   75 (265)
T ss_pred             EeeCceeEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCEEc
Confidence            34444444555555  99999999999999999999 5677888888777543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.71  E-value=5.7e-08  Score=86.74  Aligned_cols=54  Identities=6%  Similarity=0.075  Sum_probs=38.7

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+..+...+.+.+.+... +..+|++|++.. ..+.+.+|+..
T Consensus       160 ~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~  215 (264)
T PRK13546        160 VNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAW  215 (264)
T ss_pred             hCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEE
Confidence            47799999998 78999999889999887643 455666666644 33455566543

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.71  E-value=4.2e-08  Score=85.99  Aligned_cols=54  Identities=13%  Similarity=0.130  Sum_probs=39.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++|+++||+ ..|+......+.+.+.+...  +..+|+++++.+ ....+.+|+..
T Consensus       142 ~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~  198 (230)
T TIGR02770       142 LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAV  198 (230)
T ss_pred             cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            36789999998 78999999999999887643  456667776655 33445566543

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=4.6e-08  Score=88.21  Aligned_cols=159  Identities=14%  Similarity=0.224  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceeccccc-------cc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELTT-------LS   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~-------~~   90 (365)
                      +++.+.-.+..|..  +.|.||+|+||||++++|++ +..+..|.+.+++......+...   ...+.+..       .+
T Consensus        19 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t   95 (277)
T PRK13652         19 ALNNINFIAPRNSR--IAVIGPNGAGKSTLFRHFNG-ILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT   95 (277)
T ss_pred             eeeEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence            33444444445554  89999999999999999999 56788888888775431100000   00000000       00


Q ss_pred             cccceecCCCCcCccch---hHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844           91 SANHVELSPSDAGFQDR---YVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                      ..+.+.+.....+....   ..+.+.++.+.     ...+..+|            ...+++++|+||+ ..|+..+...
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~  175 (277)
T PRK13652         96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE  175 (277)
T ss_pred             HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            00000000000000000   01122222211     11111112            1247899999998 7899999999


Q ss_pred             HHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +.+.+.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       176 l~~~l~~l~~~~g~tvli~tH~~~~-~~~~~drv~~  210 (277)
T PRK13652        176 LIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYV  210 (277)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEE
Confidence            9999987643  4567777776653 3445566643

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.71  E-value=3.2e-08  Score=86.64  Aligned_cols=54  Identities=20%  Similarity=0.369  Sum_probs=40.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+...+..+|++|++.+.+ +. .+|+..+
T Consensus       156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~-~d~i~~l  210 (229)
T cd03254         156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-KN-ADKILVL  210 (229)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-hh-CCEEEEE
Confidence            47899999998 7899999999999998875566778888776643 32 4555433

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.71  E-value=1.8e-08  Score=89.28  Aligned_cols=54  Identities=15%  Similarity=0.221  Sum_probs=40.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+. ...+.+|+.+
T Consensus       161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~-~~~~~d~i~~  215 (247)
T TIGR00972       161 VEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQ-AARISDRTAF  215 (247)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHH-HHHhCCEEEE
Confidence            47899999998 789999999999999887555567777776553 3445566543

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.71  E-value=4.7e-08  Score=88.79  Aligned_cols=54  Identities=19%  Similarity=0.267  Sum_probs=37.4

Q ss_pred             cCCCCCCccccC----HHHHHHHHHHHHc---C-CCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844            7 YRPKTLDQVIVH----QDIAQNLKKLVTE---Q-DCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus         7 ~rP~~~~~iig~----~~~~~~l~~~l~~---~-~~~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +...+|+++...    ..+......++..   + ...+++|+||+|+|||+++.++++++..
T Consensus       121 ~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~  182 (306)
T PRK08939        121 LLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK  182 (306)
T ss_pred             HhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            345678887643    3344444555543   1 2334999999999999999999998853

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.71  E-value=4.8e-08  Score=85.91  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=39.7

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+...+..+.+.+.+...  ...+|++|++... .+.+.+|+.+
T Consensus       146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~-~~~~~d~i~~  202 (235)
T cd03299         146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE-AWALADKVAI  202 (235)
T ss_pred             cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEE
Confidence            47799999998 78999999999999987643  4667777776553 3445566543

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.71  E-value=7.9e-08  Score=79.00  Aligned_cols=111  Identities=17%  Similarity=0.264  Sum_probs=65.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHH--HH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE--VI  114 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l  114 (365)
                      +.|.||+|+||||+++++++. ..+..+.+.+++... ..  ..       .......+.+..+ .   .....+.  +.
T Consensus        28 ~~i~G~nGsGKStll~~l~g~-~~~~~G~i~~~~~~~-~~--~~-------~~~~~~~i~~~~q-l---S~G~~~r~~l~   92 (157)
T cd00267          28 VALVGPNGSGKSTLLRAIAGL-LKPTSGEILIDGKDI-AK--LP-------LEELRRRIGYVPQ-L---SGGQRQRVALA   92 (157)
T ss_pred             EEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCEEc-cc--CC-------HHHHHhceEEEee-C---CHHHHHHHHHH
Confidence            899999999999999999984 456667676666432 00  00       0000111222221 1   1011111  11


Q ss_pred             HHHHhcCCCCCCCCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCc-eeEEEEecCCCc
Q 017844          115 KEMAKNRPIDTKGKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS-CRLILCCNSSSK  172 (365)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~-~~~Il~t~~~~~  172 (365)
                      ..+          ..+++++++||+ ..|+......+.+.+.+.... ..+++++++.+.
T Consensus        93 ~~l----------~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~  142 (157)
T cd00267          93 RAL----------LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL  142 (157)
T ss_pred             HHH----------hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            111          234689999999 689999999999999876443 556666666543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=4.3e-08  Score=88.83  Aligned_cols=160  Identities=18%  Similarity=0.313  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC--CC-----cceeccccc----c
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA--GS-----RNIDLELTT----L   89 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~--~~-----~~~~~~~~~----~   89 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||+++|++ +..++.+.+.+++......+  ..     ....+....    .
T Consensus        22 ~l~~vsl~i~~Ge~--~~iiG~NGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~   98 (287)
T PRK13641         22 GLDNISFELEEGSF--VALVGHTGSGKSTLMQHFNA-LLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL   98 (287)
T ss_pred             ceeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence            44444445555655  89999999999999999998 66788888888876441100  00     000000000    0


Q ss_pred             ---ccccceecCCCCcCccch---hHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CCCCH
Q 017844           90 ---SSANHVELSPSDAGFQDR---YVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKLSR  144 (365)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~------~~~~~~~~------------~~~~~vliiDE~-~~L~~  144 (365)
                         +..+.+.+.....+....   ..+.+.++.+.-      .....+|+            ..+++++++||+ ..|+.
T Consensus        99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~  178 (287)
T PRK13641         99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP  178 (287)
T ss_pred             ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence               000000000000000000   011222222111      00011111            237899999998 88999


Q ss_pred             HHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          145 EAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       145 ~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ..+..+.+.+.+... +..+|++|++.+ ....+.+|+.++
T Consensus       179 ~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l  218 (287)
T PRK13641        179 EGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVL  218 (287)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            999999999988743 456666666544 334566776544

>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2

Probab=98.70  E-value=1.2e-07  Score=79.11  Aligned_cols=111  Identities=21%  Similarity=0.318  Sum_probs=84.5

Q ss_pred             CCCCceEEEEeCC----CCCCHHHHHHHHHHHhhhcCceeEEEEec-CCC---cccHHHhccceeEEecCCCHHHHHHHH
Q 017844          127 GKRGFKVLVLNEV----DKLSREAQHSLRRTMEKYSASCRLILCCN-SSS---KVTEAIRSRCLNIRINSPTEEQIVKVL  198 (365)
Q Consensus       127 ~~~~~~vliiDE~----~~L~~~~~~~Ll~~le~~~~~~~~Il~t~-~~~---~l~~~l~sR~~~i~~~~~~~~~~~~iL  198 (365)
                      ..+..+++++.++    +.........|.++++.++.++.+|+.++ ..+   ++...+...+.++.+.+|+..++..|+
T Consensus        54 lF~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i  133 (172)
T PF06144_consen   54 LFGDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWI  133 (172)
T ss_dssp             SSSSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHH
T ss_pred             ccCCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHH
Confidence            3667899999998    44566777889999999988888888888 333   356777778889999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          199 EFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +..+++.|+.+++++++.+++..++|++.+.+.++++++
T Consensus       134 ~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L  172 (172)
T PF06144_consen  134 KERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL  172 (172)
T ss_dssp             HHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999998864

7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.70  E-value=3.9e-08  Score=86.54  Aligned_cols=54  Identities=13%  Similarity=0.267  Sum_probs=40.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.|.+...+..+|+++++.+.+ .. .+|+..+
T Consensus       154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~-~d~~~~l  208 (236)
T cd03253         154 KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VN-ADKIIVL  208 (236)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence            47899999998 7899999999999998775555677777776644 33 5665443

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=4.4e-08  Score=88.77  Aligned_cols=156  Identities=17%  Similarity=0.227  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Cc----ceecccccccc-c--
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SR----NIDLELTTLSS-A--   92 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~----~~~~~~~~~~~-~--   92 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..+..+.+.+++........ ..    ...+  ..... +  
T Consensus        21 ~l~~vsl~i~~Ge~--v~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i--g~v~q~~~~   95 (288)
T PRK13643         21 ALFDIDLEVKKGSY--TALIGHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKV--GVVFQFPES   95 (288)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEECccccccccHHHHHhhE--EEEecCcch
Confidence            44444445555655  99999999999999999999 667888888888754310000 00    0000  00000 0  


Q ss_pred             cce--------ecCCCCcCccch---hHHHHHHHHHHh------cCCCCCCC------------CCCceEEEEeCC-CCC
Q 017844           93 NHV--------ELSPSDAGFQDR---YVVQEVIKEMAK------NRPIDTKG------------KRGFKVLVLNEV-DKL  142 (365)
Q Consensus        93 ~~~--------~~~~~~~~~~~~---~~~~~~l~~~~~------~~~~~~~~------------~~~~~vliiDE~-~~L  142 (365)
                      ..+        .+.+...+....   ..+.+.++.+.-      ..+..+|+            ..+++++++||+ ..|
T Consensus        96 ~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gL  175 (288)
T PRK13643         96 QLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL  175 (288)
T ss_pred             hcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence            000        000000010000   011222221111      11111111            237899999998 789


Q ss_pred             CHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       143 ~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ++.....+++.+.+... +..+|++|++.+ ....+.+|+.
T Consensus       176 D~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~  215 (288)
T PRK13643        176 DPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVY  215 (288)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEE
Confidence            99999999999987643 456666776654 3345566664

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.70  E-value=1e-07  Score=83.12  Aligned_cols=52  Identities=17%  Similarity=0.207  Sum_probs=38.5

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC  181 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~  181 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|++|++.+. ...+.+|.
T Consensus       130 ~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~-~~~~~d~i  183 (223)
T TIGR03771       130 TRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQ-AMATCDRV  183 (223)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEE
Confidence            47899999998 78999999999999987653 4567777776553 33444554

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.70  E-value=4.1e-08  Score=86.81  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHH-hccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l-~sR~~  182 (365)
                      .+++++++||+ ..|+......+.+.+.+... +..+|++|++.+.+ ..+ .+|+.
T Consensus       161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~-~~~~~d~i~  216 (243)
T TIGR01978       161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLL-NYIKPDYVH  216 (243)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH-HhhcCCeEE
Confidence            37889999998 88999999999999988753 45677777766533 333 35543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.69  E-value=4.6e-08  Score=86.14  Aligned_cols=52  Identities=23%  Similarity=0.404  Sum_probs=39.9

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|+......+.+.+.+...+..+|++|++.+.+ . ..+|+.
T Consensus       155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~-~~d~v~  207 (237)
T cd03252         155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-K-NADRII  207 (237)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-H-hCCEEE
Confidence            37799999998 8899999999999998876556778888777644 2 245543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=5.9e-08  Score=87.38  Aligned_cols=151  Identities=15%  Similarity=0.264  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++..+...+... ...       ...+.+.++
T Consensus        17 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~i~G-l~~~~~G~i~~~g~~~~~~~~~~-~~~-------~~~i~~v~q   85 (275)
T PRK13639         17 ALKGINFKAEKGEM--VALLGPNGAGKSTLFLHFNG-ILKPTSGEVLIKGEPIKYDKKSL-LEV-------RKTVGIVFQ   85 (275)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCccEEEECCEECccccchH-HHH-------HhheEEEee
Confidence            34444444555555  99999999999999999998 56777888888775441001000 000       000111111


Q ss_pred             Cc--------------------Cccch---hHHHHHHHHHHh-----cCCCCCC------------CCCCceEEEEeCC-
Q 017844          101 DA--------------------GFQDR---YVVQEVIKEMAK-----NRPIDTK------------GKRGFKVLVLNEV-  139 (365)
Q Consensus       101 ~~--------------------~~~~~---~~~~~~l~~~~~-----~~~~~~~------------~~~~~~vliiDE~-  139 (365)
                      +.                    +....   ..+.+.++.+.-     ..+..+|            ...+++++++||+ 
T Consensus        86 ~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  165 (275)
T PRK13639         86 NPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT  165 (275)
T ss_pred             ChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            10                    00000   011112221100     0000111            1247899999998 


Q ss_pred             CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          140 DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       140 ~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ..|+...+..+.+.+.+... +..+|+++++.+. ...+.+|+..
T Consensus       166 ~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~-~~~~~d~i~~  209 (275)
T PRK13639        166 SGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL-VPVYADKVYV  209 (275)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEE
Confidence            78999999999999987643 4567777776553 3345566543

>PRK09183 transposase/IS protein; Provisional

Probab=98.69  E-value=1.3e-07  Score=84.07  Aligned_cols=61  Identities=20%  Similarity=0.280  Sum_probs=40.7

Q ss_pred             CceEEEEeCCCC--CCHHHHHHHHHHHhhhcCceeEEEEecCCCc-----c------cHHHhccc----eeEEecCCC
Q 017844          130 GFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCCNSSSK-----V------TEAIRSRC----LNIRINSPT  190 (365)
Q Consensus       130 ~~~vliiDE~~~--L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~-----l------~~~l~sR~----~~i~~~~~~  190 (365)
                      .+.++||||++.  ++....+.|+++++....+..+|++||.+..     +      ..++.+|.    ..+.|...+
T Consensus       164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~s  241 (259)
T PRK09183        164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGES  241 (259)
T ss_pred             CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCCC
Confidence            347999999976  4556667889988765445568888886542     1      13555654    467776654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.69  E-value=7.4e-09  Score=101.47  Aligned_cols=155  Identities=10%  Similarity=0.189  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc--ceecccccccc-------
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR--NIDLELTTLSS-------   91 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~-------   91 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..+..|.+.+++..+...+...  ...+  .....       
T Consensus        26 il~~vsl~i~~Ge~--~~liG~NGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i--~~v~q~~~~~~~  100 (510)
T PRK15439         26 VLKGIDFTLHAGEV--HALLGGNGAGKSTLMKIIAG-IVPPDSGTLEIGGNPCARLTPAKAHQLGI--YLVPQEPLLFPN  100 (510)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCCCCHHHHHhCCE--EEEeccCccCCC
Confidence            44444444555555  89999999999999999998 55677788877765431000000  0000  00000       


Q ss_pred             ---ccceecCCCCcCccchhHHHHHHHHHHhcC-----CCCCC------------CCCCceEEEEeCC-CCCCHHHHHHH
Q 017844           92 ---ANHVELSPSDAGFQDRYVVQEVIKEMAKNR-----PIDTK------------GKRGFKVLVLNEV-DKLSREAQHSL  150 (365)
Q Consensus        92 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~L  150 (365)
                         .+.+.+.... .......+.+.++.+.-..     ...+|            ...+++++++||+ ..|++.....+
T Consensus       101 ~tv~e~l~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l  179 (510)
T PRK15439        101 LSVKENILFGLPK-RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL  179 (510)
T ss_pred             CcHHHHhhccccc-chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence               0000000000 0000011222222211100     00111            1247899999998 88999999999


Q ss_pred             HHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          151 RRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       151 l~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+.|.+... +..+|++|++.+. ...+.+|+.
T Consensus       180 ~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~i~  211 (510)
T PRK15439        180 FSRIRELLAQGVGIVFISHKLPE-IRQLADRIS  211 (510)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEE
Confidence            999887643 3556666666553 344556653

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=98.69  E-value=4.8e-07  Score=79.24  Aligned_cols=177  Identities=18%  Similarity=0.225  Sum_probs=99.9

Q ss_pred             cccCHHHHHHHHHHHH----cCC--CCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844           15 VIVHQDIAQNLKKLVT----EQD--CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus        15 iig~~~~~~~l~~~l~----~~~--~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      +.||.-+++.+...++    .+.  .|- +-|+|++||||+..++.||+.++......-++.                  
T Consensus        84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~------------------  145 (344)
T KOG2170|consen   84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH------------------  145 (344)
T ss_pred             hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH------------------
Confidence            4677665555554443    332  232 789999999999999999998764432110000                  


Q ss_pred             ccccccceecCCCCcCccchhHHHH-HHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-------C
Q 017844           88 TLSSANHVELSPSDAGFQDRYVVQE-VIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-------A  159 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-------~  159 (365)
                      .+.+.    .........+  ..++ +...+.....     ..++.++|+||+|.|.++..+.|-..++.++       .
T Consensus       146 ~fvat----~hFP~~~~ie--~Yk~eL~~~v~~~v~-----~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~fr  214 (344)
T KOG2170|consen  146 HFVAT----LHFPHASKIE--DYKEELKNRVRGTVQ-----ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFR  214 (344)
T ss_pred             Hhhhh----ccCCChHHHH--HHHHHHHHHHHHHHH-----hcCCceEEechhhhcCHhHHHHHhhhhcccccccccccc
Confidence            00000    0000000000  0111 1111222111     3456899999999999999888888887543       3


Q ss_pred             ceeEEEEecCCCcccH-----------------------HHh-------------ccc-------eeEEecCCCHHHHHH
Q 017844          160 SCRLILCCNSSSKVTE-----------------------AIR-------------SRC-------LNIRINSPTEEQIVK  196 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~-----------------------~l~-------------sR~-------~~i~~~~~~~~~~~~  196 (365)
                      +..||+.+|.......                       ++.             ||.       ..|.|-|++...+..
T Consensus       215 kaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~  294 (344)
T KOG2170|consen  215 KAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRS  294 (344)
T ss_pred             ceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHH
Confidence            5679999875542111                       110             111       146677777777777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHH
Q 017844          197 VLEFIAKKEGLQLPSGFATRLAEK  220 (365)
Q Consensus       197 iL~~~~~~~~~~i~~~~~~~i~~~  220 (365)
                      -++..+.++|...+.+.++.+++.
T Consensus       295 C~r~el~~rg~~~d~~~~erva~~  318 (344)
T KOG2170|consen  295 CIRAELRKRGLAPDQDFVERVANS  318 (344)
T ss_pred             HHHHHHHhcccccchHHHHHHHHh
Confidence            777666677766666666666654

>PLN03210 Resistant to P

Probab=98.69  E-value=5.8e-07  Score=96.31  Aligned_cols=197  Identities=14%  Similarity=0.206  Sum_probs=103.9

Q ss_pred             CCCCCccccCHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      +..+++++|.+..++.+..++.-+  ...-+.|+|++|+||||+|+++++.+.....+.+.++........         
T Consensus       180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~---------  250 (1153)
T PLN03210        180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM---------  250 (1153)
T ss_pred             CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch---------
Confidence            456889999999888888887532  222399999999999999999988765443333332211000000         


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCC--------CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDT--------KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                      ....     .....+.... ....++.+..+........        ....++-++|+|+++.  ....+.|....+...
T Consensus       251 ~~~~-----~~~~~~~~~~-~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~  322 (1153)
T PLN03210        251 EIYS-----SANPDDYNMK-LHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFG  322 (1153)
T ss_pred             hhcc-----cccccccchh-HHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCC
Confidence            0000     0000000000 0000111111111000000        0124556899999973  344444444333334


Q ss_pred             CceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP--SGFATRLAEKSNRSL  225 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~--~~~~~~i~~~~~g~l  225 (365)
                      .+.++|+||++..-+ ..  ..+ .++.+..++.++..+++...+-+....-+  .+....+++.++|-+
T Consensus       323 ~GsrIIiTTrd~~vl-~~--~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP  389 (1153)
T PLN03210        323 SGSRIIVITKDKHFL-RA--HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP  389 (1153)
T ss_pred             CCcEEEEEeCcHHHH-Hh--cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence            456777777764322 11  112 47888899999998888877754332211  234566777887755

syringae 6; Provisional

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.68  E-value=2e-08  Score=89.98  Aligned_cols=159  Identities=18%  Similarity=0.222  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceeccccc------ccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELTT------LSS   91 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~------~~~   91 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+..   ....+.+..      .+.
T Consensus        22 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   98 (265)
T PRK10253         22 VAENLTVEIPDGHF--TAIIGPNGCGKSTLLRTLSR-LMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV   98 (265)
T ss_pred             EeeecceEECCCCE--EEEECCCCCCHHHHHHHHcC-CCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcH
Confidence            44444444555554  99999999999999999999 5567777777776543100000   000000000      000


Q ss_pred             ccceecC--CC-C-cC-ccc--hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844           92 ANHVELS--PS-D-AG-FQD--RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREA  146 (365)
Q Consensus        92 ~~~~~~~--~~-~-~~-~~~--~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~  146 (365)
                      .+.+.+.  .. . .. ...  ...+.+.++.+.     ......+|            ...+++++++||+ ..|+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~  178 (265)
T PRK10253         99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH  178 (265)
T ss_pred             HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            0001000  00 0 00 000  011222222211     11111111            1247899999998 7899999


Q ss_pred             HHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          147 QHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       147 ~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ...+.+.|.+...  +..+|++|++.+ ....+.+|+..
T Consensus       179 ~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~  216 (265)
T PRK10253        179 QIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIA  216 (265)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            9999999987643  456777776655 34455566543

>PHA00729 NTP-binding motif containing protein

Probab=98.68  E-value=2.1e-07  Score=79.77  Aligned_cols=29  Identities=24%  Similarity=0.363  Sum_probs=25.7

Q ss_pred             cccHHHhccceeEEecCCCHHHHHHHHHH
Q 017844          172 KVTEAIRSRCLNIRINSPTEEQIVKVLEF  200 (365)
Q Consensus       172 ~l~~~l~sR~~~i~~~~~~~~~~~~iL~~  200 (365)
                      .+.++++|||..+.|.+++.+++.+.|+.
T Consensus       110 ~L~~aLrSR~~l~il~~ls~edL~~~Lr~  138 (226)
T PHA00729        110 KIYALIRTRVSAVIFTTPSPEDLAFYLRE  138 (226)
T ss_pred             HHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence            46788999999999999999999998875

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.68  E-value=5.6e-08  Score=84.61  Aligned_cols=54  Identities=15%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+ .. .+.+|+..+
T Consensus       157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~-~~-~~~d~v~~l  211 (220)
T cd03245         157 NDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS-LL-DLVDRIIVM  211 (220)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HH-HhCCEEEEE
Confidence            47899999998 88999999999999988765566777777765 33 455555443

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.68  E-value=8.9e-08  Score=84.95  Aligned_cols=147  Identities=18%  Similarity=0.257  Sum_probs=76.8

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc-ceecCCCcceeccccccccccceecCCCCcCccc
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD  106 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (365)
                      .+..|..  +.|.||+|+||||+++++++ +..+..+.+.+++.. +...|........ ...+...++.+..   +. .
T Consensus        26 ~i~~Ge~--~~I~G~NGsGKSTLl~~i~G-l~~p~~G~i~~~~~~~i~~v~q~~~~~~~-l~~~~~~~~~~~~---~~-~   97 (251)
T PRK09544         26 ELKPGKI--LTLLGPNGAGKSTLVRVVLG-LVAPDEGVIKRNGKLRIGYVPQKLYLDTT-LPLTVNRFLRLRP---GT-K   97 (251)
T ss_pred             EEcCCcE--EEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCccCEEEeccccccccc-cChhHHHHHhccc---cc-c
Confidence            3444544  99999999999999999999 556777766655421 1111111000000 0000000000000   00 0


Q ss_pred             hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEE
Q 017844          107 RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILC  166 (365)
Q Consensus       107 ~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~  166 (365)
                      ...+.+.++.+.     ......+|            ...+++++++||+ ..|+......+.+.+.+...  +..+|++
T Consensus        98 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiiv  177 (251)
T PRK09544         98 KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMV  177 (251)
T ss_pred             HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            111222222211     11111111            1247799999998 88999999999998877643  4567777


Q ss_pred             ecCCCcccHHHhcccee
Q 017844          167 CNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       167 t~~~~~l~~~l~sR~~~  183 (365)
                      |++.+. ...+.+|+.+
T Consensus       178 sH~~~~-i~~~~d~i~~  193 (251)
T PRK09544        178 SHDLHL-VMAKTDEVLC  193 (251)
T ss_pred             ecCHHH-HHHhCCEEEE
Confidence            776553 3344555543

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.68  E-value=3.8e-08  Score=86.02  Aligned_cols=45  Identities=20%  Similarity=0.396  Sum_probs=36.9

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l  173 (365)
                      .+++++++||+ ..|+......+.+.+.+...+..+|++|++.+.+
T Consensus       167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  212 (226)
T cd03248         167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTV  212 (226)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence            47899999998 7899999999999998765566788888776643

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.68  E-value=1e-07  Score=85.68  Aligned_cols=52  Identities=8%  Similarity=0.146  Sum_probs=38.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRC  181 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~  181 (365)
                      .+++++++||+ ..|++.....+.+.|.+... +..+|+++++.+.+ ..+.+|+
T Consensus       159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~-~~~~d~v  212 (272)
T PRK15056        159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSV-TEFCDYT  212 (272)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEE
Confidence            37899999998 88999999999999987643 45677777765533 3344554

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=5.2e-08  Score=88.08  Aligned_cols=150  Identities=15%  Similarity=0.181  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++......+... ..+       ...+.+.++
T Consensus        21 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~i~G-l~~p~~G~i~i~g~~~~~~~~~~-~~~-------~~~ig~v~q   89 (283)
T PRK13636         21 ALKGININIKKGEV--TAILGGNGAGKSTLFQNLNG-ILKPSSGRILFDGKPIDYSRKGL-MKL-------RESVGMVFQ   89 (283)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCccEEEECCEECCCCcchH-HHH-------HhhEEEEec
Confidence            44444445555655  99999999999999999999 56778888888875441000000 000       000111111


Q ss_pred             Cc--------------------CccchhHHHHHHHHHHhcCCC---------CCC------------CCCCceEEEEeCC
Q 017844          101 DA--------------------GFQDRYVVQEVIKEMAKNRPI---------DTK------------GKRGFKVLVLNEV  139 (365)
Q Consensus       101 ~~--------------------~~~~~~~~~~~l~~~~~~~~~---------~~~------------~~~~~~vliiDE~  139 (365)
                      +.                    +. ......+.+..+.....+         .+|            ...+++++++||+
T Consensus        90 ~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEP  168 (283)
T PRK13636         90 DPDNQLFSASVYQDVSFGAVNLKL-PEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP  168 (283)
T ss_pred             CcchhhccccHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            10                    00 000111111111111111         111            1247899999998


Q ss_pred             -CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          140 -DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       140 -~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                       ..|+......+.+.+.+...  +..+|++|++.+. ...+.+|..+
T Consensus       169 t~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~  214 (283)
T PRK13636        169 TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFV  214 (283)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEE
Confidence             88999999999998887643  4566777766554 3455666643

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.67  E-value=2.9e-08  Score=88.68  Aligned_cols=54  Identities=9%  Similarity=0.123  Sum_probs=40.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+. ...+.+|+.+
T Consensus       173 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~-~~~~~d~i~~  227 (260)
T PRK10744        173 IRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ-AARCSDYTAF  227 (260)
T ss_pred             CCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHHhCCEEEE
Confidence            47899999998 789999999999999887555567777776553 3445566543

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=1.1e-07  Score=84.56  Aligned_cols=54  Identities=15%  Similarity=0.212  Sum_probs=40.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+...+..+|++|++.+. ...+.+|+..
T Consensus       163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~-~~~~~d~i~~  217 (250)
T PRK14262        163 VEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQ-AIRIADYIAF  217 (250)
T ss_pred             CCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhCCEEEE
Confidence            47899999998 789999999999999887555667777776553 3344566543

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.67  E-value=5.3e-08  Score=89.72  Aligned_cols=54  Identities=11%  Similarity=0.234  Sum_probs=40.0

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.|.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       117 ~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e-~~~~~d~i~v  173 (325)
T TIGR01187       117 FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEE-AMTMSDRIAI  173 (325)
T ss_pred             hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            47899999998 88999999999998887542  4667778777653 2445566543

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=2.4e-08  Score=88.87  Aligned_cols=54  Identities=9%  Similarity=0.174  Sum_probs=40.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.|.+...+..+|+++++.+. ...+.+|+.+
T Consensus       166 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~-~~~~~d~i~~  220 (253)
T PRK14267        166 MKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ-AARVSDYVAF  220 (253)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH-HHhhCCEEEE
Confidence            47899999998 789999999999999887555667777776553 3445566543

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.66  E-value=4e-08  Score=85.56  Aligned_cols=45  Identities=20%  Similarity=0.395  Sum_probs=36.9

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l  173 (365)
                      .+++++++||+ ..|+......+.+.|.+...+..+|++|++...+
T Consensus       156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  201 (221)
T cd03244         156 RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI  201 (221)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence            47789999998 7899999999999998875566778888776644

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=6.6e-08  Score=87.71  Aligned_cols=160  Identities=16%  Similarity=0.255  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec-CC-C-----cceeccccc----c
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID-AG-S-----RNIDLELTT----L   89 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~-~~-~-----~~~~~~~~~----~   89 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..++.+.+.+++..+... +. .     ....+.+..    +
T Consensus        22 ~L~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l   98 (290)
T PRK13634         22 ALYDVNVSIPSGSY--VAIIGHTGSGKSTLLQHLNG-LLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL   98 (290)
T ss_pred             ceeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence            44444445555655  99999999999999999998 5577788888877544100 00 0     000000000    0


Q ss_pred             ---ccccceecCCCCcCccch---hHHHHHHHHHHhc------CCCCCC------------CCCCceEEEEeCC-CCCCH
Q 017844           90 ---SSANHVELSPSDAGFQDR---YVVQEVIKEMAKN------RPIDTK------------GKRGFKVLVLNEV-DKLSR  144 (365)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~------~~~~~~------------~~~~~~vliiDE~-~~L~~  144 (365)
                         +..+.+.+.....+....   ..+.+.++.+.-.      .+..+|            ...+++++++||+ ..|++
T Consensus        99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~  178 (290)
T PRK13634         99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP  178 (290)
T ss_pred             hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence               000000000000010000   0112222221110      111111            1247899999998 78999


Q ss_pred             HHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          145 EAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       145 ~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ..+..+++.+.+...  +..+|++|++.+. ...+.+|+.++
T Consensus       179 ~~~~~l~~~L~~l~~~~g~tviiitHd~~~-~~~~~drv~~l  219 (290)
T PRK13634        179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMED-AARYADQIVVM  219 (290)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            999999999987643  4567777776553 34556776544

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=1.2e-08  Score=99.99  Aligned_cols=159  Identities=16%  Similarity=0.185  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC--CCccceeccccceecCCC----cceeccccc-----
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS----RNIDLELTT-----   88 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~i~~~~~~~~~~~~~----~~~~~~~~~-----   88 (365)
                      .+++.+.-.+..|..  +.|.||+|+|||||++++++. ..+  ..|.+.+++..+...+..    ....+.+..     
T Consensus        19 ~il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl-~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~   95 (506)
T PRK13549         19 KALDNVSLKVRAGEI--VSLCGENGAGKSTLMKVLSGV-YPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK   95 (506)
T ss_pred             EeecceeEEEeCCeE--EEEECCCCCCHHHHHHHHhCC-CCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence            345555555555655  899999999999999999994 443  677787776543110000    000000000     


Q ss_pred             -cccccceecCCCCc--Cccch----hHHHHHHHHHHhcCCC-----CCC------------CCCCceEEEEeCC-CCCC
Q 017844           89 -LSSANHVELSPSDA--GFQDR----YVVQEVIKEMAKNRPI-----DTK------------GKRGFKVLVLNEV-DKLS  143 (365)
Q Consensus        89 -~~~~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~-----~~~------------~~~~~~vliiDE~-~~L~  143 (365)
                       .+..+.+.+.....  +..+.    ..+.+.++.+.-....     .+|            ...+++++++||+ ..|+
T Consensus        96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD  175 (506)
T PRK13549         96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLT  175 (506)
T ss_pred             CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence             00001111110000  00011    1122333322110000     111            1247899999998 7899


Q ss_pred             HHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          144 REAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       144 ~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      +.....+.+.|.+... +..+|++|++.+ ....+.+|+.
T Consensus       176 ~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~  214 (506)
T PRK13549        176 ESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTIC  214 (506)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEE
Confidence            9999999999987643 345666666544 3344455553

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.66  E-value=3e-08  Score=81.99  Aligned_cols=62  Identities=13%  Similarity=0.291  Sum_probs=38.0

Q ss_pred             CceEEEEeCCCCC---CHHHHHHHHHHHhhhcCceeEEEEecCC--CcccHHHhcc--ceeEEecCCCHHHH
Q 017844          130 GFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSS--SKVTEAIRSR--CLNIRINSPTEEQI  194 (365)
Q Consensus       130 ~~~vliiDE~~~L---~~~~~~~Ll~~le~~~~~~~~Il~t~~~--~~l~~~l~sR--~~~i~~~~~~~~~~  194 (365)
                      ..++++|||+..|   ++..++++.++|+.   +..+|.+-...  ..+.+.+++|  +.++.+.+-+.+.+
T Consensus        95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s---~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen   95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS---NKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             CCHEEEE---STTCCC-CHHHHHHHHHHCT---TSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCH
T ss_pred             CCCEEEEeccchhhhcCHHHHHHHHHHHcC---CCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhH
Confidence            5579999999766   56777888888882   34455555444  3578899988  77888876655544

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=6.4e-08  Score=87.26  Aligned_cols=156  Identities=16%  Similarity=0.235  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC---Ccceeccccc-------cc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG---SRNIDLELTT-------LS   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~-------~~   90 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++......+.   .....+.+..       .+
T Consensus        22 ~l~~v~l~i~~Ge~--~~I~G~nGsGKSTLl~~l~G-l~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t   98 (277)
T PRK13642         22 QLNGVSFSITKGEW--VSIIGQNGSGKSTTARLIDG-LFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT   98 (277)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCC
Confidence            33444444455555  99999999999999999999 557788888887754310000   0000000000       00


Q ss_pred             cccceecCCCCcCccchhH----HHHHHHHH-----HhcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844           91 SANHVELSPSDAGFQDRYV----VQEVIKEM-----AKNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQH  148 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~----~~~~l~~~-----~~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~  148 (365)
                      ..+.+.+.....+. ....    +.+.++.+     ....+..+|            ...+++++++||+ ..|+.....
T Consensus        99 v~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~  177 (277)
T PRK13642         99 VEDDVAFGMENQGI-PREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ  177 (277)
T ss_pred             HHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            00000000000000 0111    11122211     111111111            1247799999998 789999999


Q ss_pred             HHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       149 ~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++.+.+...  +..+|++|++.+.+ . ..+|+.
T Consensus       178 ~l~~~l~~l~~~~g~tiil~sH~~~~~-~-~~d~i~  211 (277)
T PRK13642        178 EIMRVIHEIKEKYQLTVLSITHDLDEA-A-SSDRIL  211 (277)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHH-H-hCCEEE
Confidence            99999987643  56788888877754 2 356653

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=6.2e-08  Score=87.55  Aligned_cols=54  Identities=13%  Similarity=0.248  Sum_probs=40.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|++|++.+.+ . ..+|+.++
T Consensus       160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~-~~d~i~~l  216 (282)
T PRK13640        160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-N-MADQVLVL  216 (282)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-H-hCCEEEEE
Confidence            47899999998 88999999999999987643  46777788776654 3 46666443

>PF05729 NACHT: NACHT domain

Probab=98.66  E-value=3e-07  Score=75.95  Aligned_cols=74  Identities=16%  Similarity=0.209  Sum_probs=48.1

Q ss_pred             CceEEEEeCCCCCCHHHH--------HHHHHHHhh-hcCceeEEEEecCCCc-ccHHHhccceeEEecCCCHHHHHHHHH
Q 017844          130 GFKVLVLNEVDKLSREAQ--------HSLRRTMEK-YSASCRLILCCNSSSK-VTEAIRSRCLNIRINSPTEEQIVKVLE  199 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~--------~~Ll~~le~-~~~~~~~Il~t~~~~~-l~~~l~sR~~~i~~~~~~~~~~~~iL~  199 (365)
                      +.-++|||-+|.+.....        ..+...+.. .+.++++++++..... -..........+.+.+++.+++.++++
T Consensus        81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  160 (166)
T PF05729_consen   81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR  160 (166)
T ss_pred             CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence            446899999988765322        234455554 3557888888765442 112222223578999999999999998


Q ss_pred             HHHH
Q 017844          200 FIAK  203 (365)
Q Consensus       200 ~~~~  203 (365)
                      +.++
T Consensus       161 ~~f~  164 (166)
T PF05729_consen  161 KYFS  164 (166)
T ss_pred             HHhh
Confidence            8764

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=4e-08  Score=87.46  Aligned_cols=55  Identities=13%  Similarity=0.183  Sum_probs=40.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+...+..+|++|++.+. ...+.+|+.++
T Consensus       167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~-~~~~~d~i~~l  222 (254)
T PRK14273        167 IEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ-AGRISDRTAFF  222 (254)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            37899999998 789999999999999887555667777776553 34455666443

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.65  E-value=5.6e-08  Score=86.50  Aligned_cols=55  Identities=13%  Similarity=0.198  Sum_probs=40.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|+++++.+. ...+.+|+..+
T Consensus       166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~-~~~~~d~v~~l  221 (253)
T PRK14242        166 VEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQ-AARVSDVTAFF  221 (253)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH-HHHhCCEEEEE
Confidence            47899999998 789999999999999887545566677766553 34455665443

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=7.2e-08  Score=87.50  Aligned_cols=55  Identities=16%  Similarity=0.251  Sum_probs=40.0

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|++|++.+. ...+.+|+.++
T Consensus       167 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~-~~~~~d~i~~l  224 (289)
T PRK13645        167 MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ-VLRIADEVIVM  224 (289)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence            37889999998 88999999999999887642  4567777776553 34455665433

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=9.8e-08  Score=85.66  Aligned_cols=56  Identities=9%  Similarity=0.167  Sum_probs=41.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~  185 (365)
                      .+++++++||+ ..|+......+.+.+.+...+..+|++|++.+. ...+.+|..++.
T Consensus       171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~-~~~~~d~i~~l~  227 (269)
T PRK14259        171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQ-AVRVSDMTAFFN  227 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEe
Confidence            47899999998 889999999999999887555667777776543 344555554443

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=9.8e-08  Score=85.50  Aligned_cols=55  Identities=13%  Similarity=0.136  Sum_probs=39.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+..+...+.+.+.+...  +..+|++|++.+. ...+.+|+.++
T Consensus       164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~-i~~~~d~i~~l  221 (265)
T PRK10575        164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM-AARYCDYLVAL  221 (265)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            47899999998 78999999999999887642  4567777776553 33455665433

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.64  E-value=2.4e-08  Score=98.49  Aligned_cols=135  Identities=16%  Similarity=0.268  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.++.|+.  +.+.||+|+||||+++.+++ +..++.|.+.+++.+... - ..       .+  ...+.+.++
T Consensus       350 vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~i~g~~i~~-~-~~-------~l--r~~i~~V~Q  415 (529)
T TIGR02868       350 VLDGVSLDLPPGER--VAILGPSGSGKSTLLMLLTG-LLDPLQGEVTLDGVSVSS-L-QD-------EL--RRRISVFAQ  415 (529)
T ss_pred             eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhhh-H-HH-------HH--HhheEEEcc
Confidence            44444444555555  99999999999999999998 678888989888855410 0 00       00  001222222


Q ss_pred             CcCc---------------cchhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEe
Q 017844          101 DAGF---------------QDRYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLN  137 (365)
Q Consensus       101 ~~~~---------------~~~~~~~~~l~~~-----~~~~~-----------~~~~~------------~~~~~vliiD  137 (365)
                      +...               .+...+.+.++..     ....|           ..+|+            -.+++|+++|
T Consensus       416 ~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD  495 (529)
T TIGR02868       416 DAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD  495 (529)
T ss_pred             CcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            2110               0111122222211     00000           01111            2378899999


Q ss_pred             CC-CCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844          138 EV-DKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (365)
Q Consensus       138 E~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~  169 (365)
                      |+ ..|+.+....+.+.+.+..++..+|++|++
T Consensus       496 E~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr  528 (529)
T TIGR02868       496 EPTEHLDAGTESELLEDLLAALSGKTVVVITHH  528 (529)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            99 789999999999999887666778888775

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=1.1e-07  Score=86.13  Aligned_cols=160  Identities=18%  Similarity=0.326  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC-----cceeccccc----c--
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDLELTT----L--   89 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~----~--   89 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++......+..     ....+.+..    .  
T Consensus        22 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~   98 (287)
T PRK13637         22 ALDNVNIEIEDGEF--VGLIGHTGSGKSTLIQHLNG-LLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE   98 (287)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence            44444445555655  99999999999999999998 6678888888887554110000     000000000    0  


Q ss_pred             -ccccceecCCCCcCccch---hHHHHHHHHHHhc-------CCCCCCC------------CCCceEEEEeCC-CCCCHH
Q 017844           90 -SSANHVELSPSDAGFQDR---YVVQEVIKEMAKN-------RPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (365)
Q Consensus        90 -~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-------~~~~~~~------------~~~~~vliiDE~-~~L~~~  145 (365)
                       +..+.+.+.....+....   ..+.+.++.+.-.       .+..+|+            ..+++++++||+ ..|+..
T Consensus        99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~  178 (287)
T PRK13637         99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK  178 (287)
T ss_pred             ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence             000000000000011100   0122233322110       0111111            237899999998 789999


Q ss_pred             HHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          146 AQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       146 ~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+..+++.+.+...  +..+|++|++.+. ...+.+|+.++
T Consensus       179 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~drv~~l  218 (287)
T PRK13637        179 GRDEILNKIKELHKEYNMTIILVSHSMED-VAKLADRIIVM  218 (287)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEE
Confidence            99999999987643  4567777776553 34456776443

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.64  E-value=2.5e-08  Score=97.84  Aligned_cols=159  Identities=14%  Similarity=0.167  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC----cceeccccc------c
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELTT------L   89 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~------~   89 (365)
                      .+++.+...+..|..  +.|.||+|+|||||++++++ +..+..|.+.+++..+...+..    ....+.+..      .
T Consensus        19 ~il~~vs~~i~~Ge~--~~liG~nGsGKSTLl~~i~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~   95 (510)
T PRK09700         19 HALKSVNLTVYPGEI--HALLGENGAGKSTLMKVLSG-IHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL   95 (510)
T ss_pred             EEeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence            344555555555655  89999999999999999998 5567778887777543110100    000000000      0


Q ss_pred             ccccceecCCCC----cCc--cch----hHHHHHHHHHHhcC-----CCCCC------------CCCCceEEEEeCC-CC
Q 017844           90 SSANHVELSPSD----AGF--QDR----YVVQEVIKEMAKNR-----PIDTK------------GKRGFKVLVLNEV-DK  141 (365)
Q Consensus        90 ~~~~~~~~~~~~----~~~--~~~----~~~~~~l~~~~~~~-----~~~~~------------~~~~~~vliiDE~-~~  141 (365)
                      +..+.+.+....    .+.  ...    ..+.+.++.+.-..     ...+|            ...+++++++||+ ..
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~  175 (510)
T PRK09700         96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS  175 (510)
T ss_pred             cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence            000111110000    000  000    11222222221100     00111            1247899999998 88


Q ss_pred             CCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          142 LSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       142 L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      |+......+.+.|.+... +..+|++|++.. ....+.+|+.
T Consensus       176 LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~  216 (510)
T PRK09700        176 LTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYT  216 (510)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEE
Confidence            999999999999887643 345666666544 3345556654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.64  E-value=8.4e-08  Score=86.06  Aligned_cols=54  Identities=19%  Similarity=0.234  Sum_probs=39.5

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+...+..+.+.+++...  +..+|++|++.+ ....+.+|+..
T Consensus       168 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~  224 (268)
T PRK10419        168 VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMV  224 (268)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEE
Confidence            47899999998 78999999999999987643  456777777755 33445555543

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=1e-07  Score=86.26  Aligned_cols=159  Identities=15%  Similarity=0.263  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC-------cceeccccc----c
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-------RNIDLELTT----L   89 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~----~   89 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..++.|.+.+++......+..       ....+.+..    +
T Consensus        22 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~L~G-l~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l   98 (286)
T PRK13646         22 AIHDVNTEFEQGKY--YAIVGQTGSGKSTLIQNINA-LLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL   98 (286)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence            44444444555555  89999999999999999998 6678888888877544110000       000000000    0


Q ss_pred             ---ccccceecCCCCcCccch---hHHHHHHHHHHh------cCCCCCC------------CCCCceEEEEeCC-CCCCH
Q 017844           90 ---SSANHVELSPSDAGFQDR---YVVQEVIKEMAK------NRPIDTK------------GKRGFKVLVLNEV-DKLSR  144 (365)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~------~~~~~~~------------~~~~~~vliiDE~-~~L~~  144 (365)
                         +..+.+.+.....+....   ..+.+.++.+.-      ..+..+|            ...+++++++||+ ..|++
T Consensus        99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~  178 (286)
T PRK13646         99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP  178 (286)
T ss_pred             chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence               000001110000011100   011222222211      0111111            1247899999998 88999


Q ss_pred             HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhcccee
Q 017844          145 EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       145 ~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .....+++++.+..  .+..+|++|++.+.+ ..+.+|+.+
T Consensus       179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~-~~~~dri~~  218 (286)
T PRK13646        179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEV-ARYADEVIV  218 (286)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HHhCCEEEE
Confidence            99999999998764  246777777776643 344566643

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.64  E-value=4.6e-08  Score=87.01  Aligned_cols=54  Identities=17%  Similarity=0.209  Sum_probs=40.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.|.+...+..+|++|++.+. ...+.+|+.+
T Consensus       165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~-~~~~~d~i~~  219 (252)
T PRK14239        165 TSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQ-ASRISDRTGF  219 (252)
T ss_pred             cCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHH-HHHhCCEEEE
Confidence            47799999998 789999999999999887555667777776553 3344566543

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.64  E-value=1.9e-07  Score=82.20  Aligned_cols=158  Identities=18%  Similarity=0.245  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc------eec---ccccccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN------IDL---ELTTLSS   91 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~------~~~---~~~~~~~   91 (365)
                      +++.+.-.+..|..  +.+.|.+|.|||||+|++-. |..|+.+.+.+++.+...-+....      .-+   .|+.+++
T Consensus        21 al~~vsL~I~~GeI--~GIIG~SGAGKSTLiR~iN~-Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss   97 (339)
T COG1135          21 ALDDVSLEIPKGEI--FGIIGYSGAGKSTLLRLINL-LERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS   97 (339)
T ss_pred             eeccceEEEcCCcE--EEEEcCCCCcHHHHHHHHhc-cCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc
Confidence            44555555666766  89999999999999999976 889999999999865411110000      000   0011111


Q ss_pred             cccee---cCCCCcCccchhHHHHHHHHHHhc---------CCCCCCC------------CCCceEEEEeCC-CCCCHHH
Q 017844           92 ANHVE---LSPSDAGFQDRYVVQEVIKEMAKN---------RPIDTKG------------KRGFKVLVLNEV-DKLSREA  146 (365)
Q Consensus        92 ~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~------------~~~~~vliiDE~-~~L~~~~  146 (365)
                      ....+   +.-.-.+ .++..+++-..++...         .|..+|+            ..+|+|++.||+ ..|+++.
T Consensus        98 rTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T  176 (339)
T COG1135          98 RTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET  176 (339)
T ss_pred             chHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence            11111   1000011 1122222222222211         1222232            347899999999 7899999


Q ss_pred             HHHHHHHHhhh--cCceeEEEEecCCCcccHHHhcccee
Q 017844          147 QHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       147 ~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ...++..|.+.  .-+..++++|+..+ +...+.+|..+
T Consensus       177 T~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVav  214 (339)
T COG1135         177 TQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAV  214 (339)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheE
Confidence            88888888764  23466777776544 66777787644

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.64  E-value=1.3e-07  Score=84.79  Aligned_cols=54  Identities=13%  Similarity=0.147  Sum_probs=40.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+. ...+.+|+.+
T Consensus       180 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~-~~~~~d~i~~  234 (267)
T PRK14237        180 VKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ-AARASDYTAF  234 (267)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCEEEE
Confidence            37899999998 789999999999999887555667777776553 3445566543

>PRK10536 hypothetical protein; Provisional

Probab=98.63  E-value=5.2e-07  Score=78.64  Aligned_cols=134  Identities=13%  Similarity=0.223  Sum_probs=71.1

Q ss_pred             cccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc-CCCCccceeccccceecCCCcceecccccccccc
Q 017844           15 VIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSAN   93 (365)
Q Consensus        15 iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (365)
                      +.+.......+..++....  .++++||+|||||+++.+++.... ......+.+..                ..+...+
T Consensus        57 i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~R----------------P~v~~ge  118 (262)
T PRK10536         57 ILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTR----------------PVLQADE  118 (262)
T ss_pred             ccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeC----------------CCCCchh
Confidence            4445555556666776644  499999999999999999988533 33333232221                1122233


Q ss_pred             ceecCCCCcCcc-ch--hHHHHHHHHH---------Hh--cCCC---CCC---C-CCCceEEEEeCCCCCCHHHHHHHHH
Q 017844           94 HVELSPSDAGFQ-DR--YVVQEVIKEM---------AK--NRPI---DTK---G-KRGFKVLVLNEVDKLSREAQHSLRR  152 (365)
Q Consensus        94 ~~~~~~~~~~~~-~~--~~~~~~l~~~---------~~--~~~~---~~~---~-~~~~~vliiDE~~~L~~~~~~~Ll~  152 (365)
                      .+.+.|.+..-. ..  ..+.+.+..+         ..  ...+   .+.   + .-...++|+||++++++.....++.
T Consensus       119 ~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt  198 (262)
T PRK10536        119 DLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT  198 (262)
T ss_pred             hhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh
Confidence            344444432100 00  0111111111         00  0000   000   0 0134799999999999876665554


Q ss_pred             HHhhhcCceeEEEEecC
Q 017844          153 TMEKYSASCRLILCCNS  169 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~  169 (365)
                      -+   ..+.++|++.+.
T Consensus       199 R~---g~~sk~v~~GD~  212 (262)
T PRK10536        199 RL---GENVTVIVNGDI  212 (262)
T ss_pred             hc---CCCCEEEEeCCh
Confidence            44   457888888764

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.63  E-value=6.1e-08  Score=86.09  Aligned_cols=54  Identities=9%  Similarity=0.175  Sum_probs=39.9

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+ ....+.+|+.+
T Consensus       163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~v~~  217 (250)
T PRK14240        163 VEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQ-QASRISDKTAF  217 (250)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHH-HHHhhCCEEEE
Confidence            47899999998 78999999999999987755566777777655 33445566543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.63  E-value=4.9e-06  Score=87.59  Aligned_cols=213  Identities=14%  Similarity=0.147  Sum_probs=116.6

Q ss_pred             CCcccccC-CCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            1 MLWVDKYR-PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         1 ~~w~~k~r-P~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      |+-.-|+. |..-.+++-.+...+.+...   ...+-++++||+|.||||++..++... .   ....+.....-.+|..
T Consensus         1 ~~~~~k~~~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~-~---~~~w~~l~~~d~~~~~   73 (903)
T PRK04841          1 MLIPSKLSRPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK-N---NLGWYSLDESDNQPER   73 (903)
T ss_pred             CCcccccCCCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC-C---CeEEEecCcccCCHHH
Confidence            44445664 55567778788777766432   223339999999999999998877532 1   1111111000000000


Q ss_pred             cceeccccccccccceecCCC------CcCccc-hhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH-HHHHH
Q 017844           80 RNIDLELTTLSSANHVELSPS------DAGFQD-RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QHSLR  151 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~-~~~Ll  151 (365)
                      -...+ ...+... .....+.      ..+... ...+..++..+..        ...+-++||||+|.++... ...+.
T Consensus        74 f~~~l-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~lvlDD~h~~~~~~~~~~l~  143 (903)
T PRK04841         74 FASYL-IAALQQA-TNGHCSKSEALAQKRQYASLSSLFAQLFIELAD--------WHQPLYLVIDDYHLITNPEIHEAMR  143 (903)
T ss_pred             HHHHH-HHHHHHh-cCcccchhhhhhccCCcCCHHHHHHHHHHHHhc--------CCCCEEEEEeCcCcCCChHHHHHHH
Confidence            00000 0000000 0000000      000000 0112222232221        2355799999999997544 44666


Q ss_pred             HHHhhhcCceeEEEEecCCCcc-cHHHhccceeEEec----CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 017844          152 RTMEKYSASCRLILCCNSSSKV-TEAIRSRCLNIRIN----SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR  226 (365)
Q Consensus       152 ~~le~~~~~~~~Il~t~~~~~l-~~~l~sR~~~i~~~----~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr  226 (365)
                      .+++..+.+..+|+++.....+ ...++-+-..+.+.    +++.++...++...+   |..++++.+..+.+.++|.+-
T Consensus       144 ~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~  220 (903)
T PRK04841        144 FFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWAT  220 (903)
T ss_pred             HHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHH
Confidence            6677777888888887764433 22333233344444    889999999997543   677899999999999999986


Q ss_pred             HHHHHHH
Q 017844          227 RAILSFE  233 (365)
Q Consensus       227 ~ai~~l~  233 (365)
                      -..-+..
T Consensus       221 ~l~l~~~  227 (903)
T PRK04841        221 ALQLIAL  227 (903)
T ss_pred             HHHHHHH
Confidence            5543333

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.63  E-value=1.6e-07  Score=83.41  Aligned_cols=54  Identities=7%  Similarity=0.111  Sum_probs=40.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+..+...+.+.+.+......+|++|++.+ ....+.+|+.+
T Consensus       164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~-~~~~~~d~v~~  218 (251)
T PRK14270        164 VKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQ-QASRVSDYTAF  218 (251)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHH-HHHHhcCEEEE
Confidence            47899999998 88999999999999988755556777776654 33455566643

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.63  E-value=1.5e-07  Score=84.12  Aligned_cols=55  Identities=9%  Similarity=0.201  Sum_probs=41.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+...+..+|+++++.+. ...+.+|+..+
T Consensus       172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~-~~~~~d~i~~l  227 (259)
T PRK14274        172 TNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQ-AARVSDQTAFF  227 (259)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH-HHHhCCEEEEE
Confidence            47899999998 789999999999999887655667777777653 34455665433

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.63  E-value=1.5e-07  Score=83.83  Aligned_cols=54  Identities=13%  Similarity=0.127  Sum_probs=39.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|+++++.+.+ ..+.+|+..
T Consensus       157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~-~~~~d~v~~  213 (254)
T PRK10418        157 CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVV-ARLADDVAV  213 (254)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH-HHhCCEEEE
Confidence            47899999998 78999999999998887632  45677777765543 344566543

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.63  E-value=2.8e-08  Score=78.88  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=29.1

Q ss_pred             eEEEEeCCCCC-CHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844          132 KVLVLNEVDKL-SREAQHSLRRTMEKYSASCRLILCCNS  169 (365)
Q Consensus       132 ~vliiDE~~~L-~~~~~~~Ll~~le~~~~~~~~Il~t~~  169 (365)
                      .+++|||+|.+ +.+..+.|..+.+  ..++.+|++++.
T Consensus        89 ~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~  125 (131)
T PF13401_consen   89 VLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP  125 (131)
T ss_dssp             EEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred             eEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence            69999999999 8777777777666  457888888876

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.62  E-value=5.1e-08  Score=86.88  Aligned_cols=55  Identities=7%  Similarity=0.172  Sum_probs=41.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+..+...+.+.+.+......+|++|++.. ..+.+.+|+..+
T Consensus       170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~-~~~~~~d~v~~l  225 (257)
T PRK14246        170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ-QVARVADYVAFL  225 (257)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHH-HHHHhCCEEEEE
Confidence            47899999998 78999999999999987755567777777655 344555665433

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.62  E-value=5.2e-08  Score=86.52  Aligned_cols=54  Identities=19%  Similarity=0.269  Sum_probs=40.7

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+ ....+.+|+.+
T Consensus       162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~-~~~~~~d~i~~  216 (249)
T PRK14253        162 MEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQ-QARRISDRTAF  216 (249)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEE
Confidence            47899999998 78999999999999988765566777777655 34455566543

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=1e-07  Score=87.41  Aligned_cols=50  Identities=18%  Similarity=0.257  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..+..|.+.+++..+
T Consensus        41 ~L~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~L~G-l~~p~~G~I~i~g~~~   90 (320)
T PRK13631         41 ALNNISYTFEKNKI--YFIIGNSGSGKSTLVTHFNG-LIKSKYGTIQVGDIYI   90 (320)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCCeEEECCEEc
Confidence            44444444555555  99999999999999999998 6678888888877543

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.62  E-value=8.9e-08  Score=88.26  Aligned_cols=152  Identities=16%  Similarity=0.220  Sum_probs=84.2

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCC
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSD  101 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (365)
                      ++.+.-.+..|..  +.|.|++|+||||++++|++ +..+..+.+.+++... ......  +.  ...  ...+.+..++
T Consensus        37 l~~vsl~i~~Ge~--~~lvG~sGsGKSTLlk~i~G-l~~p~~G~I~~~G~~i-~~~~~~--~~--~~~--r~~i~~v~Q~  106 (331)
T PRK15079         37 VDGVTLRLYEGET--LGVVGESGCGKSTFARAIIG-LVKATDGEVAWLGKDL-LGMKDD--EW--RAV--RSDIQMIFQD  106 (331)
T ss_pred             EeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHHC-CCCCCCcEEEECCEEC-CcCCHH--HH--HHH--hCceEEEecC
Confidence            3444444455555  99999999999999999998 5677788888877654 110000  00  000  0001111111


Q ss_pred             c--Cc--------------------cch----hHHHHHHHHHH------hcCCCCCC------------CCCCceEEEEe
Q 017844          102 A--GF--------------------QDR----YVVQEVIKEMA------KNRPIDTK------------GKRGFKVLVLN  137 (365)
Q Consensus       102 ~--~~--------------------~~~----~~~~~~l~~~~------~~~~~~~~------------~~~~~~vliiD  137 (365)
                      .  ..                    ...    ..+.+.++.+.      ...+..+|            ...+++++|+|
T Consensus       107 ~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD  186 (331)
T PRK15079        107 PLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD  186 (331)
T ss_pred             chhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            0  00                    010    01122222211      11111122            12478999999


Q ss_pred             CC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          138 EV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       138 E~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      |+ ..|+...+..+++.|.+...  +..+|++|++.. ....+.+|+.++
T Consensus       187 EPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl  235 (331)
T PRK15079        187 EPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVM  235 (331)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            98 78999999999999887643  466777777655 334455666433

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.62  E-value=1.6e-07  Score=83.43  Aligned_cols=55  Identities=9%  Similarity=0.170  Sum_probs=41.0

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+..+...+.+.+++......+|++|++.+. ...+.+|+.++
T Consensus       165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~-~~~~~d~i~~l  220 (252)
T PRK14256        165 VKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ-AARVSDYTAFF  220 (252)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH-HHhhCCEEEEE
Confidence            47799999998 889999999999999887655667777776553 34555666433

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=3.6e-08  Score=89.03  Aligned_cols=158  Identities=17%  Similarity=0.263  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-----Ccceeccccc----cc-
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-----SRNIDLELTT----LS-   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~----~~-   90 (365)
                      +++.+.-.+..|..  +.|.||+|+||||+++++++ +..+..|.+.+++... ....     .+...+.+..    .. 
T Consensus        25 vl~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~~~~G~i~i~g~~i-~~~~~~~~~~~~i~~v~q~~~~~~~~  100 (280)
T PRK13633         25 ALDDVNLEVKKGEF--LVILGRNGSGKSTIAKHMNA-LLIPSEGKVYVDGLDT-SDEENLWDIRNKAGMVFQNPDNQIVA  100 (280)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEec-cccccHHHHhhheEEEecChhhhhcc
Confidence            45555445555655  89999999999999999998 5577788888877554 1100     0000000000    00 


Q ss_pred             --cccceecCCCCcCccc---hhHHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHH
Q 017844           91 --SANHVELSPSDAGFQD---RYVVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQ  147 (365)
Q Consensus        91 --~~~~~~~~~~~~~~~~---~~~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~  147 (365)
                        ..+.+.+.....+...   ...+.+.++.+.     ...+..+|            ...+++++++||+ ..|+...+
T Consensus       101 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~  180 (280)
T PRK13633        101 TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGR  180 (280)
T ss_pred             ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence              0000000000001000   011122222211     11111111            1247899999998 88999999


Q ss_pred             HHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          148 HSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       148 ~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      ..+.+.+.+...  +..+|++|++.+.+ .. .+|+.++
T Consensus       181 ~~l~~~l~~l~~~~g~tillvtH~~~~~-~~-~d~v~~l  217 (280)
T PRK13633        181 REVVNTIKELNKKYGITIILITHYMEEA-VE-ADRIIVM  217 (280)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecChHHH-hc-CCEEEEE
Confidence            999999987642  56777788777754 33 5665433

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.62  E-value=2.4e-08  Score=84.78  Aligned_cols=55  Identities=22%  Similarity=0.357  Sum_probs=44.9

Q ss_pred             ccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        16 ig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      .|+..+.+.+.-.+.+|+.  +.+.||+|+||||+.|.+.+ +..|+.+.+.+.+.++
T Consensus        18 fG~~~Ild~v~l~V~~Gei--~~iiGgSGsGKStlLr~I~G-ll~P~~GeI~i~G~~i   72 (263)
T COG1127          18 FGDRVILDGVDLDVPRGEI--LAILGGSGSGKSTLLRLILG-LLRPDKGEILIDGEDI   72 (263)
T ss_pred             cCCEEEecCceeeecCCcE--EEEECCCCcCHHHHHHHHhc-cCCCCCCeEEEcCcch
Confidence            3556666666666667766  89999999999999999999 7789999999888765

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.62  E-value=6.8e-08  Score=86.71  Aligned_cols=54  Identities=13%  Similarity=0.186  Sum_probs=40.0

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+. ...+.+|+.+
T Consensus       181 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~-~~~~~d~v~~  235 (268)
T PRK14248        181 MKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ-ALRVSDRTAF  235 (268)
T ss_pred             CCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHH-HHHhCCEEEE
Confidence            47899999998 889999999999999877545567777777553 3445566543

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.61  E-value=1e-07  Score=84.43  Aligned_cols=54  Identities=17%  Similarity=0.246  Sum_probs=39.1

Q ss_pred             CceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      +++++++||+ ..|+......+.+.|.+... +..+|++|++.+. ...+.+|+.++
T Consensus       151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l  206 (248)
T PRK03695        151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH-TLRHADRVWLL  206 (248)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEE
Confidence            4589999998 88999999999999987643 4567777776553 34455665433

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.61  E-value=9.1e-08  Score=91.38  Aligned_cols=155  Identities=19%  Similarity=0.300  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC-----cceeccccccccccc
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS-----RNIDLELTTLSSANH   94 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~   94 (365)
                      .+++.+...+..|..  +-|.|++||||||+++++++ +..|..+.+.+++.++..+...     ....+   .+..+ +
T Consensus       305 ~Av~~VSf~l~~GE~--lglVGeSGsGKSTlar~i~g-L~~P~~G~i~~~g~~~~~~~~~~~~~r~~~Qm---vFQdp-~  377 (539)
T COG1123         305 KAVDDVSFDLREGET--LGLVGESGSGKSTLARILAG-LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQM---VFQDP-Y  377 (539)
T ss_pred             eeeeeeeeEecCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEEeCcccccccchhhhhhhheEE---EEeCc-c
Confidence            444555555666666  89999999999999999999 6778888888877542111000     00000   00000 0


Q ss_pred             eecCCC---------CcC-------ccchhHHHHHHHHH------HhcCCCCCCC------------CCCceEEEEeCC-
Q 017844           95 VELSPS---------DAG-------FQDRYVVQEVIKEM------AKNRPIDTKG------------KRGFKVLVLNEV-  139 (365)
Q Consensus        95 ~~~~~~---------~~~-------~~~~~~~~~~l~~~------~~~~~~~~~~------------~~~~~vliiDE~-  139 (365)
                      ..+++.         ...       ...+..+.++++..      ....|..+|+            ..+++++|.||+ 
T Consensus       378 ~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~  457 (539)
T COG1123         378 SSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPV  457 (539)
T ss_pred             cccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCc
Confidence            011110         000       00011122222221      1222223332            237899999997 


Q ss_pred             CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          140 DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       140 ~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ..|+...+...+++|.+...  +..++|+|++.. +...+.+|..
T Consensus       458 SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~  501 (539)
T COG1123         458 SALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVA  501 (539)
T ss_pred             cccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEE
Confidence            88999998888888876543  478999998765 3455666653

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.61  E-value=1.6e-07  Score=83.77  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|+......+.+.+.+...  +..+|++|++.+.+ ..+.+|+.
T Consensus       168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~-~~~~d~i~  223 (258)
T PRK11701        168 THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA-RLLAHRLL  223 (258)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH-HHhcCEEE
Confidence            37899999998 78999999999999887543  45667777665533 34455654

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.61  E-value=1.1e-07  Score=82.22  Aligned_cols=60  Identities=23%  Similarity=0.281  Sum_probs=44.0

Q ss_pred             CCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeEEecC
Q 017844          128 KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIRINS  188 (365)
Q Consensus       128 ~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~  188 (365)
                      -.+++|+++||+ =.|+-.++..+++++.++.  ..+.++++|+.... ..++..|...|.-..
T Consensus       172 Lh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~d-i~~lc~rv~~I~~Gq  234 (325)
T COG4586         172 LHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDD-IATLCDRVLLIDQGQ  234 (325)
T ss_pred             cCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhh-HHHhhhheEEeeCCc
Confidence            357899999998 5789999999999998763  35667777766554 367777776655443

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.60  E-value=2.4e-07  Score=73.77  Aligned_cols=187  Identities=15%  Similarity=0.253  Sum_probs=101.5

Q ss_pred             CCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce--ecCCCcce----
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK--IDAGSRNI----   82 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~--~~~~~~~~----   82 (365)
                      -+++.-++|...++-.+.-....|..  +++.||+|.|||++.|.+-- +.-+..+...+.+..|.  ..|.++..    
T Consensus         5 v~~in~~yg~~q~lfdi~l~~~~get--lvllgpsgagkssllr~lnl-le~p~sg~l~ia~~~fd~s~~~~~k~i~~lr   81 (242)
T COG4161           5 LNGINCFYGAHQALFDITLDCPEGET--LVLLGPSGAGKSSLLRVLNL-LEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR   81 (242)
T ss_pred             EcccccccccchheeeeeecCCCCCE--EEEECCCCCchHHHHHHHHH-HhCCCCCeEEecccccccccCccHHHHHHHH
Confidence            34566677776666555444444544  89999999999999998853 66677777766665541  22222110    


Q ss_pred             -ec--cc---cccccccc----eecCCCCcCccchhH---HHHHHHHH-----HhcCCCCCCCC------------CCce
Q 017844           83 -DL--EL---TTLSSANH----VELSPSDAGFQDRYV---VQEVIKEM-----AKNRPIDTKGK------------RGFK  132 (365)
Q Consensus        83 -~~--~~---~~~~~~~~----~~~~~~~~~~~~~~~---~~~~l~~~-----~~~~~~~~~~~------------~~~~  132 (365)
                       ++  .+   ..|..-..    ++-.+.-.+..+...   ..++++.+     +...|+.+++.            -++.
T Consensus        82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq  161 (242)
T COG4161          82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence             00  00   00000000    000000111111111   12222222     22233333332            2678


Q ss_pred             EEEEeCC-CCCCHHHHHHHHHHHhhhcCcee-EEEEecCCCcccHHHhccce------e------EEecCCCHHHHHHHH
Q 017844          133 VLVLNEV-DKLSREAQHSLRRTMEKYSASCR-LILCCNSSSKVTEAIRSRCL------N------IRINSPTEEQIVKVL  198 (365)
Q Consensus       133 vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~-~Il~t~~~~~l~~~l~sR~~------~------i~~~~~~~~~~~~iL  198 (365)
                      |+++||+ -.|+++..+...+++.+...... -+++|+.. .+...+.+|..      +      -.|..|..++...+|
T Consensus       162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~~ft~p~te~f~~yl  240 (242)
T COG4161         162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNYL  240 (242)
T ss_pred             EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchhhccCccHHHHHHHh
Confidence            9999998 67899999999999998866543 44444443 34445556642      2      237777777777665


Q ss_pred             H
Q 017844          199 E  199 (365)
Q Consensus       199 ~  199 (365)
                      .
T Consensus       241 s  241 (242)
T COG4161         241 S  241 (242)
T ss_pred             c
Confidence            4

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.60  E-value=3.7e-07  Score=80.81  Aligned_cols=105  Identities=19%  Similarity=0.328  Sum_probs=58.2

Q ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHH
Q 017844           33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQE  112 (365)
Q Consensus        33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (365)
                      +..+++|+||+|+|||++|-+|+.++.........+..                     ++.+.-.......  .....+
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~---------------------~el~~~Lk~~~~~--~~~~~~  160 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA---------------------PDLLSKLKAAFDE--GRLEEK  160 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH---------------------HHHHHHHHHHHhc--CchHHH
Confidence            33449999999999999999999998632221111111                     0001000000000  000001


Q ss_pred             HHHHHHhcCCCCCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          113 VIKEMAKNRPIDTKGKRGFKVLVLNEVDK--LSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       113 ~l~~~~~~~~~~~~~~~~~~vliiDE~~~--L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      +.+.           -.+.+++||||+..  ++....+.+++++.........++++|.+.
T Consensus       161 l~~~-----------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~  210 (254)
T COG1484         161 LLRE-----------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLSF  210 (254)
T ss_pred             HHHH-----------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence            1111           13458999999865  566667778887776544434488887654

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=3.2e-07  Score=81.49  Aligned_cols=106  Identities=21%  Similarity=0.312  Sum_probs=72.6

Q ss_pred             CceEEEEeCCCCCC------------HHHHHHHHHHHhhhc----------CceeEEEEe----cCCCcccHHHhccce-
Q 017844          130 GFKVLVLNEVDKLS------------REAQHSLRRTMEKYS----------ASCRLILCC----NSSSKVTEAIRSRCL-  182 (365)
Q Consensus       130 ~~~vliiDE~~~L~------------~~~~~~Ll~~le~~~----------~~~~~Il~t----~~~~~l~~~l~sR~~-  182 (365)
                      +..|+||||+|.+.            ...|..||.++|...          .++.||...    ..|+.+.|.+.-|+- 
T Consensus       250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI  329 (444)
T COG1220         250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI  329 (444)
T ss_pred             hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence            45799999999773            235677888887421          122233332    245679999999995 


Q ss_pred             eEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHH
Q 017844          183 NIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETC  235 (365)
Q Consensus       183 ~i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~~--------~g~lr~ai~~l~~~  235 (365)
                      .+++.+++.++..++|..           .++.+|+  .+++++++.||+.+        +=..|++-..++.+
T Consensus       330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl  403 (444)
T COG1220         330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL  403 (444)
T ss_pred             EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence            899999999999999753           2223555  57899999999853        12346665555544

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.60  E-value=1.4e-07  Score=84.45  Aligned_cols=53  Identities=13%  Similarity=0.174  Sum_probs=39.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|+......+.+.+.+...  ...+|++|++.+. ...+.+|+.
T Consensus       169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~  224 (262)
T PRK09984        169 QQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIV  224 (262)
T ss_pred             cCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEE
Confidence            47899999998 88999999999999988743  4667777777653 334556654

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.60  E-value=6.1e-08  Score=86.20  Aligned_cols=55  Identities=9%  Similarity=0.154  Sum_probs=40.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+ ....+.+|+..+
T Consensus       165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  220 (252)
T PRK14272        165 VEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH-QAARVSDTTSFF  220 (252)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence            47799999998 78999999999999988755566777777655 334455666433

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.60  E-value=3.7e-08  Score=88.35  Aligned_cols=53  Identities=25%  Similarity=0.332  Sum_probs=40.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++|+++||+ ..|+......+.+.+.+...+..+|+++++.+.+ .. .+|+.+
T Consensus       155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i-~~-~dri~v  208 (275)
T cd03289         155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAM-LE-CQRFLV  208 (275)
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-Hh-CCEEEE
Confidence            47899999998 8899999988999988765567788888887543 22 566643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.59  E-value=3e-08  Score=96.89  Aligned_cols=158  Identities=14%  Similarity=0.225  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC----Ccceeccccc------cc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG----SRNIDLELTT------LS   90 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~------~~   90 (365)
                      +++.+.-.+..|..  +.|.||+|+|||||++++++ +..+..|.+.+++..+...+.    .....+....      .+
T Consensus        13 il~~vs~~i~~Ge~--~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   89 (491)
T PRK10982         13 ALDNVNLKVRPHSI--HALMGENGAGKSTLLKCLFG-IYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS   89 (491)
T ss_pred             eeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcC-CCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence            34444444555555  89999999999999999998 567778888877754310000    0000000000      00


Q ss_pred             cccceecCCCC-cCc-cchh----HHHHHHHHHHhcC-----CCCCC------------CCCCceEEEEeCC-CCCCHHH
Q 017844           91 SANHVELSPSD-AGF-QDRY----VVQEVIKEMAKNR-----PIDTK------------GKRGFKVLVLNEV-DKLSREA  146 (365)
Q Consensus        91 ~~~~~~~~~~~-~~~-~~~~----~~~~~l~~~~~~~-----~~~~~------------~~~~~~vliiDE~-~~L~~~~  146 (365)
                      ..+.+.+.... .+. .+..    .+.+.++.+.-..     ...+|            ...+++++|+||+ ..|+...
T Consensus        90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~  169 (491)
T PRK10982         90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE  169 (491)
T ss_pred             HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence            00011110000 000 0101    1222222221100     00111            1237899999998 7899999


Q ss_pred             HHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          147 QHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       147 ~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ...+.+.+.+... +..+|++|++.+. ...+.+|+.
T Consensus       170 ~~~l~~~l~~l~~~g~tvii~tH~~~~-~~~~~d~i~  205 (491)
T PRK10982        170 VNHLFTIIRKLKERGCGIVYISHKMEE-IFQLCDEIT  205 (491)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEE
Confidence            9999998887643 3556777766543 334555553

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=1.4e-07  Score=86.04  Aligned_cols=53  Identities=15%  Similarity=0.201  Sum_probs=39.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|++.....+++.+.+... ...+|++|++.+.+ ..+.+|+.
T Consensus       182 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~-~~~adrv~  236 (305)
T PRK13651        182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV-LEWTKRTI  236 (305)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHH-HHhCCEEE
Confidence            37899999998 78999999999999987643 45677777765533 34556654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.59  E-value=2.7e-07  Score=82.00  Aligned_cols=54  Identities=13%  Similarity=0.223  Sum_probs=40.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.|.+...+..+|++|++.+. ...+.+|+.+
T Consensus       166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~-~~~~~d~i~~  220 (251)
T PRK14244        166 VKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQ-AKKVSDRVAF  220 (251)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhcCEEEE
Confidence            47799999998 789999999999999877555667777776653 3445566543

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=5.9e-08  Score=86.23  Aligned_cols=55  Identities=15%  Similarity=0.205  Sum_probs=41.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+..+...+.+.+.+......+|++|++.+. ...+.+|+.++
T Consensus       164 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~-~~~~~d~i~~l  219 (251)
T PRK14251        164 VRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ-AGRISDQTAFL  219 (251)
T ss_pred             cCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH-HHhhcCEEEEE
Confidence            47899999998 789999999999999887555667777776553 34445666443

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.58  E-value=7.3e-08  Score=96.26  Aligned_cols=138  Identities=16%  Similarity=0.236  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.++.|+.  +.+.||+|+||||+++.+++ +..+..|.+.+++.+........          -...+.+.++
T Consensus       358 il~~i~l~i~~G~~--~aIvG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~----------~~~~i~~v~Q  424 (582)
T PRK11176        358 ALRNINFKIPAGKT--VALVGRSGSGKSTIANLLTR-FYDIDEGEILLDGHDLRDYTLAS----------LRNQVALVSQ  424 (582)
T ss_pred             cccCceEEeCCCCE--EEEECCCCCCHHHHHHHHHh-ccCCCCceEEECCEEhhhcCHHH----------HHhhceEEcc
Confidence            34444444444544  99999999999999999999 67888898888886541100000          0001111111


Q ss_pred             Cc----------------CccchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEE
Q 017844          101 DA----------------GFQDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVL  136 (365)
Q Consensus       101 ~~----------------~~~~~~~~~~~l~~~-----~~~~~~-----------~~~~------------~~~~~vlii  136 (365)
                      +.                ...+...+.+.++..     ....+.           .+|+            -.+++|+++
T Consensus       425 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ilil  504 (582)
T PRK11176        425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL  504 (582)
T ss_pred             CceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            11                001111222222221     111110           0111            136789999


Q ss_pred             eCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          137 NEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       137 DE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ||+ ..|+++....+.+.+.+...+..+|++|++.+
T Consensus       505 DEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~  540 (582)
T PRK11176        505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLS  540 (582)
T ss_pred             ECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence            999 88999999999999988766778888888764

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.58  E-value=7.6e-08  Score=96.25  Aligned_cols=130  Identities=16%  Similarity=0.227  Sum_probs=77.2

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc---
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF---  104 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  104 (365)
                      .++.|+.  +.+.||+|+||||+++.+++. . |..|.+.+++.+....+.          ..-...+.+.+++...   
T Consensus       372 ~i~~G~~--vaIvG~SGsGKSTL~~lL~g~-~-p~~G~I~i~g~~i~~~~~----------~~lr~~i~~v~Q~~~LF~~  437 (588)
T PRK11174        372 TLPAGQR--IALVGPSGAGKTSLLNALLGF-L-PYQGSLKINGIELRELDP----------ESWRKHLSWVGQNPQLPHG  437 (588)
T ss_pred             EEcCCCE--EEEECCCCCCHHHHHHHHhcC-C-CCCcEEEECCEecccCCH----------HHHHhheEEecCCCcCCCc
Confidence            3344444  999999999999999999994 4 778888888865410000          0000112222222110   


Q ss_pred             ------------cchhHHHHHHHHH-----HhcCC------C-----CCCC------------CCCceEEEEeCC-CCCC
Q 017844          105 ------------QDRYVVQEVIKEM-----AKNRP------I-----DTKG------------KRGFKVLVLNEV-DKLS  143 (365)
Q Consensus       105 ------------~~~~~~~~~l~~~-----~~~~~------~-----~~~~------------~~~~~vliiDE~-~~L~  143 (365)
                                  .+...+.+.++..     ....|      +     .+|+            -.+++|+++||+ ..|+
T Consensus       438 TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD  517 (588)
T PRK11174        438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD  517 (588)
T ss_pred             CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence                        1111122222211     01010      0     1111            136799999999 7899


Q ss_pred             HHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          144 REAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       144 ~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+....+.+.+.+...+..+|++|++.+
T Consensus       518 ~~te~~i~~~l~~~~~~~TvIiItHrl~  545 (588)
T PRK11174        518 AHSEQLVMQALNAASRRQTTLMVTHQLE  545 (588)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecChH
Confidence            9999999999988766777888888874

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.58  E-value=1.4e-07  Score=103.74  Aligned_cols=134  Identities=16%  Similarity=0.131  Sum_probs=77.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh--------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--------  108 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  108 (365)
                      +.|.||+|+||||+++++++ +..++.|.+.+++........ .          ....+.+.++.....+..        
T Consensus      1968 ~gLLG~NGAGKTTLlkmL~G-ll~ptsG~I~i~G~~i~~~~~-~----------~r~~IGy~pQ~~~L~~~LTv~E~L~l 2035 (2272)
T TIGR01257      1968 FGLLGVNGAGKTTTFKMLTG-DTTVTSGDATVAGKSILTNIS-D----------VHQNMGYCPQFDAIDDLLTGREHLYL 2035 (2272)
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECcchHH-H----------HhhhEEEEeccccCCCCCCHHHHHHH
Confidence            88999999999999999999 557888888888755410000 0          001112222111111100        


Q ss_pred             --------------HHHHHHHHHH-----hcCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844          109 --------------VVQEVIKEMA-----KNRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (365)
Q Consensus       109 --------------~~~~~l~~~~-----~~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~  156 (365)
                                    .+.+.++.+.     ......+|            ..++++|+++||+ ..|++.++..+.+.+.+
T Consensus      2036 ~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257      2036 YARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence                          1111121110     00000111            1347899999998 88999999999999987


Q ss_pred             hc-CceeEEEEecCCCcccHHHhcccee
Q 017844          157 YS-ASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       157 ~~-~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .. .+..+|++|++.+ ...++.+|..+
T Consensus      2116 l~~~g~TIILtTH~me-e~e~lcDrV~I 2142 (2272)
T TIGR01257      2116 IIREGRAVVLTSHSME-ECEALCTRLAI 2142 (2272)
T ss_pred             HHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            63 3445666666554 33566666643

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.58  E-value=3.1e-07  Score=82.56  Aligned_cols=54  Identities=9%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.|.+...+..+|+++++.+. ...+.+|+..
T Consensus       184 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~-i~~~~d~i~~  238 (271)
T PRK14238        184 IEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ-AARISDKTAF  238 (271)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH-HHHhCCEEEE
Confidence            37799999998 889999999999999887655667777776553 3445566543

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=1.9e-07  Score=85.94  Aligned_cols=153  Identities=16%  Similarity=0.199  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      +++.+.-.+..|..  +.|.|++|+||||++++|++ +..+..+.+.+++... ..-...  +.  ...  ...+.+..+
T Consensus        30 ~l~~vsl~i~~Ge~--~~IvG~sGsGKSTLl~~l~g-l~~p~~G~i~~~g~~l-~~~~~~--~~--~~~--r~~i~~v~Q   99 (327)
T PRK11308         30 ALDGVSFTLERGKT--LAVVGESGCGKSTLARLLTM-IETPTGGELYYQGQDL-LKADPE--AQ--KLL--RQKIQIVFQ   99 (327)
T ss_pred             EEeeeEEEECCCCE--EEEECCCCCcHHHHHHHHHc-CCCCCCcEEEECCEEc-CcCCHH--HH--HHH--hCCEEEEEc
Confidence            34444444555655  99999999999999999999 5567778888877543 100000  00  000  001111111


Q ss_pred             Cc----------------------Cccc---hhHHHHHHHHHH------hcCCCCCCC------------CCCceEEEEe
Q 017844          101 DA----------------------GFQD---RYVVQEVIKEMA------KNRPIDTKG------------KRGFKVLVLN  137 (365)
Q Consensus       101 ~~----------------------~~~~---~~~~~~~l~~~~------~~~~~~~~~------------~~~~~vliiD  137 (365)
                      +.                      +...   ...+.+.++.+.      ...+..+|+            ..+++++|+|
T Consensus       100 ~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilD  179 (327)
T PRK11308        100 NPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD  179 (327)
T ss_pred             CchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            10                      0000   011223332211      111111221            2478999999


Q ss_pred             CC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          138 EV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       138 E~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      |+ ..|+...+..+++.|.+...  +..+|++|++.. ....+.+|+.++
T Consensus       180 EPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm  228 (327)
T PRK11308        180 EPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVM  228 (327)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            98 78999999999998877633  567777777755 334455665433

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.57  E-value=1.4e-07  Score=84.06  Aligned_cols=52  Identities=13%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|++.....+.+.+.+...+..+|+++++.+.+. . .+|+.
T Consensus       173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~-~-~dri~  225 (257)
T cd03288         173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTIL-D-ADLVL  225 (257)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHH-h-CCEEE
Confidence            46799999998 78999999999998887655677788888777543 2 45653

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.56  E-value=3e-07  Score=82.04  Aligned_cols=55  Identities=7%  Similarity=0.177  Sum_probs=40.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.+.+.+......+|++|++.+. ...+.+|+.++
T Consensus       165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~-~~~~~d~i~~l  220 (258)
T PRK14241        165 VEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ-AARVSDQTAFF  220 (258)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence            47899999998 789999999999999877545667777776553 33444565444

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=6.7e-08  Score=95.28  Aligned_cols=154  Identities=21%  Similarity=0.266  Sum_probs=81.5

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc-ceecCCCcceeccccccccccceecCCC
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT-WKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      ++.+...+..|..  +.|.||+|+|||||++++++ +..+..|.+.+++.. +...|....... ....+..+.+.....
T Consensus       335 l~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~i~G-~~~p~~G~i~~~~~~~i~~~~q~~~~~~-~~~~t~~~~~~~~~~  410 (530)
T PRK15064        335 FKNLNLLLEAGER--LAIIGENGVGKTTLLRTLVG-ELEPDSGTVKWSENANIGYYAQDHAYDF-ENDLTLFDWMSQWRQ  410 (530)
T ss_pred             ecCcEEEECCCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCceEEEEEcccccccC-CCCCcHHHHHHHhcc
Confidence            3333333444544  89999999999999999998 556777777665421 111111100000 000000011111000


Q ss_pred             CcCccchhHHHHHHHHHHh------cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCce
Q 017844          101 DAGFQDRYVVQEVIKEMAK------NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASC  161 (365)
Q Consensus       101 ~~~~~~~~~~~~~l~~~~~------~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~  161 (365)
                        .......+++.++.+.-      .....+|            ...+++++++||+ ..|+......+.+.+.+.  ..
T Consensus       411 --~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~  486 (530)
T PRK15064        411 --EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EG  486 (530)
T ss_pred             --CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence              00111123333333211      1111111            1247899999998 889999999999999887  34


Q ss_pred             eEEEEecCCCcccHHHhccceeE
Q 017844          162 RLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       162 ~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+|++|++.+ ....+.+|+.++
T Consensus       487 tvi~vsHd~~-~~~~~~d~i~~l  508 (530)
T PRK15064        487 TLIFVSHDRE-FVSSLATRIIEI  508 (530)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEE
Confidence            6777777655 334455665443

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=3.2e-07  Score=81.60  Aligned_cols=54  Identities=11%  Similarity=0.152  Sum_probs=40.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+...+..+|++|++.+.+ +.+.+|+.+
T Consensus       166 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~-~~~~d~v~~  220 (253)
T PRK14261        166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA-ARVSDYTGF  220 (253)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH-HhhCCEEEE
Confidence            47899999998 8899999999999998876556677777765543 344556543

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.56  E-value=1.8e-07  Score=86.29  Aligned_cols=54  Identities=17%  Similarity=0.215  Sum_probs=40.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++|+||+ ..|+...+..+++.|.+...  +..+|++|++.. ....+.+|+.+
T Consensus       178 ~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~v  234 (330)
T PRK09473        178 CRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLV  234 (330)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEE
Confidence            37899999998 88999999999998887643  567888887765 33445666643

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=2.4e-07  Score=82.06  Aligned_cols=54  Identities=13%  Similarity=0.154  Sum_probs=39.9

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|+......+.+.+.+...+..+|++|++.+.+ ..+.+|+.+
T Consensus       159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~-~~~~d~i~~  213 (246)
T PRK14269        159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQG-KRVADYTAF  213 (246)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhhCcEEEE
Confidence            47899999998 7899999999999998765556677777765533 344556543

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.55  E-value=3e-07  Score=79.50  Aligned_cols=53  Identities=6%  Similarity=-0.028  Sum_probs=34.9

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..+++.....+.+.+.+......+|+++++.. ....+.+++.
T Consensus       121 ~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~-~~~~~~d~i~  174 (213)
T PRK15177        121 LPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR-LIKEHCHAFG  174 (213)
T ss_pred             cCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH-HHHHhcCeeE
Confidence            47789999996 88888888888887644322334667766655 3334445543

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.55  E-value=2.9e-07  Score=82.21  Aligned_cols=56  Identities=14%  Similarity=0.156  Sum_probs=42.5

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIR  185 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~  185 (365)
                      .+++++++||+ ..|+...+..+.+.+.+...+..+|+++++.+. ...+.+|+.++.
T Consensus       166 ~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~-i~~~~d~v~~l~  222 (261)
T PRK14263        166 TEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ-AIRVADTTAFFS  222 (261)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHHhCCEEEEEe
Confidence            47899999998 889999999999999887555566677766553 445667766663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
1sxj_E	354	Crystal Structure Of The Eukaryotic Clamp Loader (R		3e-52
1iqp_A	327	Crystal Structure Of The Clamp Loader Small Subunit		2e-36
2chq_A	319	Replication Factor C Adpnp Complex Length = 319		1e-35
2chg_A	226	Replication Factor C Domains 1 And 2 Length = 226		1e-35
1sxj_C	340	Crystal Structure Of The Eukaryotic Clamp Loader (R		9e-31
1sxj_D	353	Crystal Structure Of The Eukaryotic Clamp Loader (R		1e-30
1sxj_B	323	Crystal Structure Of The Eukaryotic Clamp Loader (R		3e-20
3u5z_B	324	Structure Of T4 Bacteriophage Clamp Loader Bound To		8e-14
3glf_B	395	Crystal Structure Of The Ecoli Clamp Loader Bound T		4e-07
3glh_B	376	Crystal Structure Of The E. Coli Clamp Loader Bound		4e-07
1xxi_B	368	Adp Bound E. Coli Clamp Loader Complex Length = 368		5e-07
1jr3_A	373	Crystal Structure Of The Processivity Clamp Loader		5e-07
3glg_B	395	Crystal Structure Of A Mutant (Gammat157a) E. Coli		6e-07
1njg_A	250	Nucleotide-Free Form Of An Isolated E. Coli Clamp L		9e-07
1ixr_C	312	Ruva-Ruvb Complex Length = 312		4e-04
1ixs_B	318	Structure Of Ruvb Complexed With Ruva Domain Iii Le		5e-04
1hqc_A	324	Structure Of Ruvb From Thermus Thermophilus Hb8 Len		6e-04

>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 354

Iteration: 1
 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 180/289 (62%), Gaps = 11/289 (3%)
Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           LWVDKYRPK+L+ +  ++++   LK L  + +D PHLL YGP G+GKKT  MALL  +FG
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG  ++K++ + + + A +R   LEL  +SS  H+E++PSD G  DR V+QE++KE+A+ 
Sbjct: 63  PGVYRLKIDVRQF-VTASNRK--LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
             +D +  +      +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +  
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
            I+S+CL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+
Sbjct: 180 PIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
Query: 235 CRV-QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYE 282
             +  +   K +  I   DW   + ++   I++E+S   L + R  LY+
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYD 288

>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 32/227 (14%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK T  +AL R++FG  
Sbjct: 15  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG-- 72
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                   + W+                  N +EL+ SD   +   V++E +KE A+ +P
Sbjct: 73  --------ENWR-----------------HNFLELNASDE--RGINVIREKVKEFARTKP 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
           I   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC 
Sbjct: 106 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
             R     +E I K L +IA+ EGL+L       +   +   +RRAI
Sbjct: 163 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI 209

>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    + W+                  N +E++ SD    D  VV+  IKE A+  
Sbjct: 65  ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI   G   FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 32/228 (14%)
Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG- 64
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                    + W+                  N +E++ SD    D  VV+  IKE A+  
Sbjct: 65  ---------ENWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI   G   FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340

Iteration: 1
 Score =  130 bits (328), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 32/234 (13%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+TLD+V    ++   ++K V E   PHLLFYGPPG+GK + I+AL R+++G  
Sbjct: 15  WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-- 72
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                   K +       N+ LEL           +  D G     VV+  IK+ A  R 
Sbjct: 73  --------KNYS------NMVLELN----------ASDDRGID---VVRNQIKDFASTRQ 105
Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
           I +K   GFK+++L+E D ++  AQ++LRR +E+Y+ + R  +  N + K+T A+ S+C 
Sbjct: 106 IFSK---GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162
Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
             R     +E I + +  +   E L+L       L E SN  +RR +   ++C+
Sbjct: 163 RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216

>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353

Iteration: 1
 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 133/272 (48%), Gaps = 35/272 (12%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRPK LD+V         LKK +   + PH+LFYGPPG+GK + I+AL ++++GP 
Sbjct: 27  WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK--- 119
             K ++                          +EL+ SD   +   +V+E +K  A+   
Sbjct: 87  LMKSRI--------------------------LELNASDE--RGISIVREKVKNFARLTV 118
Query: 120 NRP----IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
           ++P    ++      +K+++L+E D ++ +AQ +LRRTME YS   R  L CN  +++ +
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
            + S+C   R  +      +  L FI+++E ++   G   R+ + S   LRR I   ++ 
Sbjct: 179 PLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA 238
Query: 236 RVQQYPFKDNQAIPAMDWEEFVFEIASDIMQE 267
                   D + I +   EE    +  DI+ E
Sbjct: 239 SKGAQYLGDGKNITSTQVEELAGVVPHDILIE 270

>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 33/234 (14%)
Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ L  ++ +++    L+++  + + PH++  G PG GK T +  L  ++ G  
Sbjct: 11  WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR- 69
Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHV-ELSPSDAGFQDRYVVQEVIKEMAKNR 121
                                      S A+ V EL+ SD    D  VV+  IK  A+ +
Sbjct: 70  ---------------------------SYADGVLELNASDDRGID--VVRNQIKHFAQKK 100
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                GK   K+++L+E D ++  AQ +LRRTME YS S R    CN S+K+ E ++S+C
Sbjct: 101 LHLPPGKH--KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
             +R +  ++E ++K L  I K E ++  +     +   +   +R+AI + ++ 
Sbjct: 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212

>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4 Clamp, Primer-Template Dna, And Atp Analog Length = 324

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 48/213 (22%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGP-PGSGKKTLIMALLRQVFGPGAE 64
           KYRP T+D+ I+     +  K + ++   PH++ + P PG+GK T+  AL   V    A+
Sbjct: 19  KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NAD 75
Query: 65  KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID 124
            + V     KID     +   LT  +SA         A F  R                 
Sbjct: 76  MMFVNGSDCKIDF----VRGPLTNFASA---------ASFDGRQ---------------- 106
Query: 125 TKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLN 183
                  KV+V++E D+    E+Q  LR  ME YS++C +I+  N+   + + ++SRC  
Sbjct: 107 -------KVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159
Query: 184 IRINSPTEE-------QIVKVLEFIAKKEGLQL 209
           I    PT+E       Q+++ L  I K EG+ +
Sbjct: 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI 192

>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer-template Dna Length = 395

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 31  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 91  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 142 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 193 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 240

>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide Length = 376

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 12  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 71
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 72  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 122
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 123 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 173
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 174 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 221

>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex Length = 368

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 9   KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 69  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 120 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 218

>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii Length = 373

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 9   KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 69  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 119
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 120 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 218

>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna Length = 395

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 31  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 90
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 91  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 141
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 142 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRC 192
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 193 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 240

>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit Length = 250

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 22/228 (9%)
Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV---FGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +    G 
Sbjct: 16  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75
Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
            A    V +   +I+ G R +DL     +S   VE          R ++  V    A+ R
Sbjct: 76  TATPCGVCDNCREIEQG-RFVDLIEIDAASRTKVE--------DTRDLLDNVQYAPARGR 126
Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
                    FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRC
Sbjct: 127 ---------FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 177
Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           L   + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 178 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 225

>pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +       L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +       L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTLIMAL-------L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +       L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	1e-122
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	1e-101
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	1e-88
2chg_A	226	Replication factor C small subunit; DNA-binding pr	4e-62
2chq_A	319	Replication factor C small subunit; DNA-binding pr	2e-61
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	1e-58
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	2e-56
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	2e-47
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	4e-45
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	1e-14
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	6e-10
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	6e-10
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	7e-07
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	4e-06
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	3e-05
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	3e-05
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	3e-05
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	4e-05
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	4e-05
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	5e-05
3pvs_A	447	Replication-associated recombination protein A; ma	1e-04
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	1e-04
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	2e-04
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	4e-04

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354

 Score =  356 bits (915), Expect = e-122
 Identities = 119/329 (36%), Positives = 200/329 (60%), Gaps = 13/329 (3%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           LWVDKYRPK+L+ +  ++++   LK L  + +D PHLL YGP G+GKKT  MALL  +FG
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           PG  ++K++ + +     + N  LEL  +SS  H+E++PSD G  DR V+QE++KE+A+ 
Sbjct: 63  PGVYRLKIDVRQFV---TASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119

Query: 121 RPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE 175
             +D +  +      +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +  
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179

Query: 176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFET 234
            I+S+CL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+
Sbjct: 180 PIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239

Query: 235 CRVQ-QYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV 293
             +  +   K +  I   DW   + ++   I++E+S   L + R  LY+LL +C+P  ++
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII 299

Query: 294 LKRLLYELLK--RLDAEIKHEVCHWAAYY 320
           LK L + LL    L+   K  +  +++ +
Sbjct: 300 LKELTFSLLDVETLNTTNKSSIIEYSSVF 328

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353

 Score =  302 bits (774), Expect = e-101
 Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 27/326 (8%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             WV+KYRPK LD+V         LKK +   + PH+LFYGPPG+GK + I+AL ++++G
Sbjct: 25  QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
           P   K ++               LEL   S    + +         R  V +  K     
Sbjct: 85  PDLMKSRI---------------LELNA-SDERGISIVREKVKNFARLTVSKPSK----- 123

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
             ++      +K+++L+E D ++ +AQ +LRRTME YS   R  L CN  +++ + + S+
Sbjct: 124 HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           C   R  +      +  L FI+++E ++   G   R+ + S   LRR I   ++      
Sbjct: 184 CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQ 243

Query: 241 PFKDNQAIPAMDWEEFVF----EIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKR 296
              D + I +   EE       +I  +I+++       +++  +   + +      V+ +
Sbjct: 244 YLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQ 303

Query: 297 LLYELLKR--LDAEIKHEVCHWAAYY 320
           L    +     D   K+++       
Sbjct: 304 LHEYYITNDNFDTNFKNQISWLLFTT 329

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327

 Score =  269 bits (689), Expect = 1e-88
 Identities = 101/322 (31%), Positives = 150/322 (46%), Gaps = 36/322 (11%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK T  +AL R++FG
Sbjct: 13  KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 72

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                       W+                  N +EL+ SD    +  V++E +KE A+ 
Sbjct: 73  EN----------WR-----------------HNFLELNASDERGIN--VIREKVKEFART 103

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           +PI   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SR
Sbjct: 104 KPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           C   R     +E I K L +IA+ EGL+L       +   +   +RRAI   +       
Sbjct: 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 220

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLN-CVPPVVVLKRLLY 299
              D      M       E   ++M         + R KL E+LL   +    VL ++  
Sbjct: 221 KITDENVF--MVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHK 278

Query: 300 ELLK-RLDAEIKHEVCHWAAYY 320
           E+    ++   K  +      Y
Sbjct: 279 EVFNLPIEEPKKVLLADKIGEY 300

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score =  197 bits (503), Expect = 4e-62
 Identities = 85/228 (37%), Positives = 118/228 (51%), Gaps = 32/228 (14%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                                          N +E++ SD    D  VV+  IKE A+  
Sbjct: 66  ---------------------------NWRDNFIEMNASDERGID--VVRHKIKEFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI       FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PIGGAP---FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score =  198 bits (506), Expect = 2e-61
 Identities = 86/228 (37%), Positives = 120/228 (52%), Gaps = 32/228 (14%)

Query: 2   LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           +WV+KYRP+TLD+V+   ++ Q LK  V  ++ PHLLF GPPG+GK    +AL R +FG 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                      W+                  N +E++ SD    D  VV+  IKE A+  
Sbjct: 66  ----------NWR-----------------DNFIEMNASDERGID--VVRHKIKEFARTA 96

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC 181
           PI       FK++ L+E D L+ +AQ +LRRTME YS SCR IL CN  S++ E I+SRC
Sbjct: 97  PIGGAP---FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              R     +E + K L  I +KEG+++       L   S    R+AI
Sbjct: 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI 201

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340

 Score =  192 bits (490), Expect = 1e-58
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 32/229 (13%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           + WV+KYRP+TLD+V    ++   ++K V E   PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 13  LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                       +                     +EL+ SD    D  VV+  IK+ A  
Sbjct: 73  K----------NYS-----------------NMVLELNASDDRGID--VVRNQIKDFAST 103

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           R I     +GFK+++L+E D ++  AQ++LRR +E+Y+ + R  +  N + K+T A+ S+
Sbjct: 104 RQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           C   R     +E I + +  +   E L+L       L E SN  +RR +
Sbjct: 161 CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVL 209

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323

 Score =  185 bits (472), Expect = 2e-56
 Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 31/229 (13%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           + WV+KYRP+ L  ++ +++    L+++  + + PH++  G PG GK T +  L  ++ G
Sbjct: 9   LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                      ++                     +EL+ SD    D  VV+  IK  A+ 
Sbjct: 69  R----------SYA-----------------DGVLELNASDDRGID--VVRNQIKHFAQK 99

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
           +     GK   K+++L+E D ++  AQ +LRRTME YS S R    CN S+K+ E ++S+
Sbjct: 100 KLHLPPGK--HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
           C  +R +  ++E ++K L  I K E ++  +     +   +   +R+AI
Sbjct: 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAI 206

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score =  166 bits (423), Expect = 2e-47
 Identities = 56/320 (17%), Positives = 102/320 (31%), Gaps = 73/320 (22%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD-----------------CPHLLFYGPP 43
            LW  KY P  L QV  ++     LK  +   +                     + YGPP
Sbjct: 27  KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 86

Query: 44  GSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103
           G GK T    + ++                    G   +             E + SD  
Sbjct: 87  GIGKTTAAHLVAQE-------------------LGYDIL-------------EQNASD-- 112

Query: 104 FQDR--YVVQEVIKEMAKNRPI---------DTKGKRGFKVLVLNEVDKLSREAQHSLRR 152
              R   ++   +K    N  +                  V++++EVD +S   +  + +
Sbjct: 113 --VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQ 170

Query: 153 TMEKYSASCRLILC-CN-SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP 210
             +    +   ++  CN  +          CL+I+   P    I   L  IA +E  +L 
Sbjct: 171 LAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 230

Query: 211 SGFATRLAEKSNRSLRRAI--LSFETCRVQQYPFKDNQAIPAMDWEEFV----FEIASDI 264
                RL + +   +R+ I  LS       +    +N    +  WE+ +    F+IA  +
Sbjct: 231 PNVIDRLIQTTRGDIRQVINLLST-ISTTTKTINHENINEISKAWEKNIALKPFDIAHKM 289

Query: 265 MQEQSPKRLFQVRGKLYELL 284
           +  Q    +      L + +
Sbjct: 290 LDGQIYSDIGSRNFTLNDKI 309

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Length = 324

 Score =  156 bits (397), Expect = 4e-45
 Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 51/240 (21%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGP-PGSGKKTLIMALLRQVF 59
            +   KYRP T+D+ I+     +  K + ++   PH++ + P PG+GK T+  AL   V 
Sbjct: 14  HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73

Query: 60  GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
                          ++     ID                          V+  +   A 
Sbjct: 74  ADMMF----------VNGSDCKID-------------------------FVRGPLTNFAS 98

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIR 178
               D +     KV+V++E D+    E+Q  LR  ME YS++C +I+  N+   + + ++
Sbjct: 99  AASFDGR----QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154

Query: 179 SRCLNIRINSPTEE-------QIVKVLEFIAKKEGLQL--PSGFATRLAEKSNRSLRRAI 229
           SRC  I    PT+E       Q+++ L  I K EG+ +      A  L +K+    R+ I
Sbjct: 155 SRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAA-LVKKNFPDFRKTI 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 93.4 bits (231), Expect = 8e-21
 Identities = 50/368 (13%), Positives = 114/368 (30%), Gaps = 94/368 (25%)

Query: 4   VDKY---RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
             KY   R +   +      + Q L +L   +   ++L  G  GSGK  + + +      
Sbjct: 126 FAKYNVSRLQPYLK------LRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCL---- 172

Query: 61  PGAEKVKVENKT---WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEM 117
             + KV+ +      W ++  + N    +  +      ++ P+     D     ++    
Sbjct: 173 --SYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 118 AKNRPIDTKGKRGFK--VLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVT 174
            +         + ++  +LVL  V +           +    ++ SC+ IL      +VT
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNA----------KAWNAFNLSCK-ILLTTRFKQVT 278

Query: 175 EAIRS-----RCLNIRINSPTEEQIVKVLEFIAKKEGL---QLP-----------SGFAT 215
           + + +       L+    + T ++   V   + K        LP           S  A 
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 216 RLAEKSNRS----------LRRAI------LSFETCRVQQYP----FKDNQAIPA----M 251
            + +               L   I      L     R + +     F  +  IP     +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSL 394

Query: 252 DWEEFVFEIASDIMQEQSPKRLFQVRGK-----LYELLLNCVPPVVVL----KRLL--YE 300
            W + +      ++ +     L + + K     +  + L     +       + ++  Y 
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 301 LLKRLDAE 308
           + K  D++
Sbjct: 455 IPKTFDSD 462

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 55/391 (14%), Positives = 113/391 (28%), Gaps = 104/391 (26%)

Query: 19  QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVK--VE-----NK 71
           +D+    K ++++++  H++      SG   L   LL +      E V+  VE     N 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK----QEEMVQKFVEEVLRINY 91

Query: 72  TWKIDA-GSRNIDLELTTLSSANHVELSPSDAG-FQDRYV--------VQEVIKEMAKNR 121
            + +    +      + T       +   +D   F    V        +++ + E+   +
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 122 PIDTKGKRGF-K-VLVLNEVDKLSREAQH-------SLRRTMEKYSASCRLILCCNSSSK 172
            +   G  G  K  + L+       + +        +L+               CNS   
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN--------------CNSPET 197

Query: 173 VTEAIRSRCLNIRIN-----SPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS-NRSL- 225
           V E ++     I  N       +    +++    A+   L         L  K     L 
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---------LKSKPYENCLL 248

Query: 226 -------RRAILSFE-TCRV----QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRL 273
                   +A  +F  +C++    +     D   + A        +  S  +     K L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 274 FQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIKHEVCHWAAYY------------- 320
                K  +     +P  V+        L  +   I+  +  W   +             
Sbjct: 307 L---LKYLDCRPQDLPREVLTTNPR--RLSIIAESIRDGLATW-DNWKHVNCDKLTTIIE 360

Query: 321 VSIS----------FQILFIVPL-VDFPSPL 340
            S++          F  L + P     P+ L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 45/302 (14%), Positives = 79/302 (26%), Gaps = 119/302 (39%)

Query: 25  LKKL-VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK------IDA 77
           LK L    QD P  +    P        ++++       AE ++    TW        D 
Sbjct: 308 LKYLDCRPQDLPREVLTTNP------RRLSII-------AESIRDGLATWDNWKHVNCDK 354

Query: 78  GSRNIDLELTTLSSANH----VELS--PSDA-----------GFQDRYVVQEVIKEMAKN 120
            +  I+  L  L  A +      LS  P  A               +  V  V+ ++ K 
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 121 RPIDTKGKRGFKV---LVLNEVDKLSREAQ-HSLRRTMEKYSASCRLILCCNSSSKVTE- 175
             ++ + K        + L    KL  E   H  R  ++ Y+         +        
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTF--DSDDLIPPYLD 470

Query: 176 -----------------------------------AIRSRCLN----------------- 183
                                               IR                      
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 184 ---IRINSPTEEQIVK-VLEFIAKKE--------------GLQLPSGFATRLAEKSNRSL 225
              I  N P  E++V  +L+F+ K E               L         + E++++ +
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA---IFEEAHKQV 587

Query: 226 RR 227
           +R
Sbjct: 588 QR 589

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 59/312 (18%), Positives = 96/312 (30%), Gaps = 55/312 (17%)

Query: 18  HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVF---GPGAE--------K 65
            +   + L          H LL    PG G   LI AL R +      G +        +
Sbjct: 7   LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66

Query: 66  VKVENKTWKIDAGSRNIDLELTTLSSANHV---ELSPSDAGFQDRYVVQEV--IKEMAKN 120
                    + AG               H     L+P      +   V  V  + E    
Sbjct: 67  --------LMQAG--------------THPDYYTLAPEKGK--NTLGVDAVREVTEKLNE 102

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
                 G  G KV+ + +   L+  A ++L +T+E+  A     L      ++   +RSR
Sbjct: 103 HA--RLG--GAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY 240
           C    +  P E+  V  L        + +           S  S   A+  F+    Q  
Sbjct: 159 CRLHYLAPPPEQYAVTWLS-----REVTMSQDALLAALRLSAGSPGAALALFQGDNWQAR 213

Query: 241 PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVV----LKR 296
                QA+         + + + +  EQ+P RL  +   L + L        V    +  
Sbjct: 214 E-TLCQALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPG 272

Query: 297 LLYELLKRLDAE 308
           L+ EL   L   
Sbjct: 273 LVAELANHLSPS 284

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368

 Score = 59.2 bits (143), Expect = 6e-10
 Identities = 47/278 (16%), Positives = 92/278 (33%), Gaps = 49/278 (17%)

Query: 5   DKYRPKTLDQVIVHQD----IAQNLKKLVTE-QDCPH-LLFYGPPGSGKKTLIMAL---- 54
           D   P+   Q +V Q      A  + +++ E +     +L  G PG+GK  + M +    
Sbjct: 35  DALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94

Query: 55  ---LRQVFGPGAEKVKVENKTW--------------KIDAGSRNIDL-ELTTLSSANHVE 96
                     G+E   +E                          + L E+  + ++    
Sbjct: 95  GPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID-VINSRTQG 153

Query: 97  LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG----FKVLVLNEVDKLSREAQHSLRR 152
                +G      ++  ++E    +  + + +        VL ++EV  L  E+   L R
Sbjct: 154 FLALFSGDTGE--IKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNR 211

Query: 153 TMEKYSASCRLILCCN------------SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEF 200
            +E   A   LI+  N            S   +   +  R L +     +E+   ++L  
Sbjct: 212 ALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270

Query: 201 IAKKEGLQLPSGFATRLAEKSNR-SLRRAILSFETCRV 237
             ++E +++     T L       SLR AI       +
Sbjct: 271 RCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Length = 250

 Score = 58.0 bits (141), Expect = 6e-10
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 27/232 (11%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA-LLRQVFGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++  ++A  L    G 
Sbjct: 16  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEV--IKEMAK 119
            A    V +   +I+ G R +DL          +E+   DA    R  V++   + +  +
Sbjct: 76  TATPCGVCDNCREIEQG-RFVDL----------IEI---DAA--SRTKVEDTRDLLDNVQ 119

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS 179
             P   +G+  FKV +++EV  LSR + ++L +T+E+     + +L      K+   I S
Sbjct: 120 YAP--ARGR--FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175

Query: 180 RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
           RCL   + +   EQI   LE I  +E +         LA  +  SLR A LS
Sbjct: 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA-LS 226

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384

 Score = 49.8 bits (118), Expect = 7e-07
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 29/239 (12%)

Query: 7   YRPKTLDQVIVHQD-----IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
              K +      ++      A  ++  V  +     LF G  G+GK  +   +  ++   
Sbjct: 17  SVFKEI----PFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI--- 69

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
             E  K + +   +     N   E+     A    L+    GF        + + + K +
Sbjct: 70  -EEVKKEDEEYKDVKQAYVNCR-EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIK 127

Query: 122 PIDTKGKRGFKVLVLNEVDKL--SREAQHSLRRTMEKYSASCRLILCCNSS---SKVTEA 176
                 +    ++ L+EVD L   R     L + +   + +  +I+  N       +   
Sbjct: 128 NGTRNIR---AIIYLDEVDTLVKRRGGDIVLYQLLRSDA-NISVIMISNDINVRDYMEPR 183

Query: 177 IRSRC-LNIRINSPTEEQIVKVLEFI---AKKEGLQLPSG--FATRLAEKSNRSLRRAI 229
           + S    ++       EQ+  +L         +G        +   ++ K +   R+A+
Sbjct: 184 VLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAV 242

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 47.1 bits (111), Expect = 4e-06
 Identities = 37/259 (14%), Positives = 76/259 (29%), Gaps = 49/259 (18%)

Query: 7   YRPKTL---DQVIVHQDIAQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQVFGP 61
           Y PK L   +Q +  Q +   L   +       P     G PG+GK   +  L       
Sbjct: 14  YVPKRLPHREQQL--QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL---- 67

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
                      +K    +R + +      +   +    + +             E     
Sbjct: 68  -----------YKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALL 116

Query: 122 PIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----ASCRLILCCNS---SSKVT 174
               + +  +  LVL++   L+ +   +  R  ++          L++  ++    + + 
Sbjct: 117 VEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176

Query: 175 EAIRSRCLNIRINSP--TEEQIVK------------------VLEFIAKKEGLQLPSGFA 214
            + R       I     T++QI                    +L+ IA   G Q P    
Sbjct: 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 236

Query: 215 TRLAEKSNRSLRRAILSFE 233
              A  +   L R+  + +
Sbjct: 237 RGDARLAIDILYRSAYAAQ 255

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 12/70 (17%)

Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTL--IMAL-----L 55
          RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL  ++A      L
Sbjct: 7  RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66

Query: 56 RQVFGPGAEK 65
          R   GP  EK
Sbjct: 67 RVTSGPAIEK 76

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTL--IMAL-----L 55
          RP   D  I  + I +NL   +       +   H+LF GP G GK TL  I++      +
Sbjct: 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI 83

Query: 56 RQVFGPGAEK 65
          +    P  EK
Sbjct: 84 KTTAAPMIEK 93

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 12/70 (17%)

Query: 8  RPKTLDQVIVHQDIAQNLKKLVT-----EQDCPHLLFYGPPGSGKKTL--IMAL-----L 55
          RPK+LD+ I  +++ + L   +       +   H+L  GPPG GK TL  I+A      +
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79

Query: 56 RQVFGPGAEK 65
              GP   K
Sbjct: 80 HVTSGPVLVK 89

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Length = 373

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 31/234 (13%)

Query: 6   KYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA-LLRQVFGP 61
           K+RP+T   V+  + +   L   ++     H  LF G  G GK ++  ++A  L    G 
Sbjct: 9   KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA----GFQDRYVVQEVIKEM 117
            A    V +   +I+ G R +DL          +E+   DA      +D    ++ + + 
Sbjct: 69  TATPCGVCDNCREIEQG-RFVDL----------IEI---DAASRTKVED---TRD-LLDN 110

Query: 118 AKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAI 177
            +  P   +G+  FKV +++EV  LSR + ++L +T+E+     + +L      K+   I
Sbjct: 111 VQYAP--ARGR--FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166

Query: 178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILS 231
            SRCL   + +   EQI   LE I  +E +         LA  +  SLR A LS
Sbjct: 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA-LS 219

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 19/137 (13%)

Query: 107 RYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILC 166
           R  + +V+ +           +    VL ++EV  L  E    L R +E   A   +I  
Sbjct: 276 RGEINKVVNKYID----QGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPI-VIFA 330

Query: 167 CNSSSKVTEAI-------------RSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF 213
            N  + V                   R + IR    T +++ ++++  A+ EG+ +    
Sbjct: 331 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEA 390

Query: 214 ATRLAEKSNR-SLRRAI 229
              L E   + +LR ++
Sbjct: 391 LNHLGEIGTKTTLRYSV 407

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 58/223 (26%)

Query: 17  VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
           +  + A+    L  E    H+ F G PG+GK T+ + +   +   G              
Sbjct: 50  LLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY------------- 96

Query: 77  AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIK-----EMAKNRPIDTKGKRGF 131
                       +   + V ++  D     +Y+     K     + A             
Sbjct: 97  ------------VRKGHLVSVTRDD--LVGQYIGHTAPKTKEVLKRAMG----------- 131

Query: 132 KVLVLNEVDKLSR---------EAQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAI 177
            VL ++E   L R         EA   L + ME       +IL   +       +     
Sbjct: 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191

Query: 178 RSR-CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE 219
           RSR   +I     ++E++ ++   +   +  Q+     T L  
Sbjct: 192 RSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA 234

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 8  RPKTLDQVIVHQD--IAQN--LKKLVTEQDCPH-LLFYGPPGSGKKTL--IMA 53
          RP+ L Q  + Q   +A    L + + E    H ++ +GPPG+GK TL  ++A
Sbjct: 21 RPENLAQY-IGQQHLLAAGKPLPRAI-EAGHLHSMILWGPPGTGKTTLAEVIA 71

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Length = 387

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 48/306 (15%), Positives = 105/306 (34%), Gaps = 32/306 (10%)

Query: 19  QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78
           + +A+ L   +  +   + L YG  G+GK  +   +LR+          +E +   +   
Sbjct: 29  RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR----------LEARASSLGVL 78

Query: 79  SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNE 138
            + I +      +   V  + ++A           + E+ +         RG  ++VL+E
Sbjct: 79  VKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDE 138

Query: 139 VDKL-----SREAQHSLRRTMEKYSASCRLILCCNSS-----SKVTEAIRSRCLNIRINS 188
           +D L      ++  + + R  ++      + L   ++       +   ++S    + +  
Sbjct: 139 IDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVF 198

Query: 189 P--TEEQIVKVLEF---IAKKEGLQLPSG--FATRLAEKSNRSLRRAILSFETCR--VQQ 239
           P  T  Q+  +LE     A   G+  P        LA + +   RRA+   +  R   + 
Sbjct: 199 PPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRAL---DLLRVAGEI 255

Query: 240 YPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLY 299
              +  + +          EI  D + E         +  L  +++            +Y
Sbjct: 256 AERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIY 315

Query: 300 ELLKRL 305
           E  K L
Sbjct: 316 ERYKEL 321

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 44/282 (15%), Positives = 93/282 (32%), Gaps = 29/282 (10%)

Query: 19  QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG 78
           + IA  L  L  E+   ++  YG  G+GK  ++  +L ++      K K       I+  
Sbjct: 30  RKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV----YINT- 84

Query: 79  SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNE 138
                 ++ T       +L  S         +          + +   G +   V+VL+E
Sbjct: 85  -----RQIDTPYRV-LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQ--VVIVLDE 136

Query: 139 VDKLSR----EAQHSLRRTMEKYSASCRLILCCNSSSKVTE----AIRSRCLNIRI--NS 188
           +D   +    +  + L R   + + S    +   +  K  +     ++S      I    
Sbjct: 137 IDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPP 196

Query: 189 PTEEQIVKVLE---FIAKKEGLQLPSG--FATRLAEKSNRSLRRAILSFETCRVQQYPFK 243
              E++  +L     +A K G+   +       LA + +   RRA+        +     
Sbjct: 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVS-GEIAERM 255

Query: 244 DNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL 285
            +  +          EI  D +++      F  +  L  ++ 
Sbjct: 256 KDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVS 297

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 24/182 (13%)

Query: 36  HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV 95
            ++  G PG GK TL+  ++ ++   G   +    +  +     +     + T      +
Sbjct: 2   KIIITGEPGVGKTTLVKKIVERL---GKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI 58

Query: 96  ELSPSDAGFQD--RYVV----QEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK---LSREA 146
             S      +    Y V     E +      R      K   KV++++E+ K    S++ 
Sbjct: 59  FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF 118

Query: 147 QHSLRRTMEKYSASCRLILCC--NSSSKVTEAIRSRCLNIRINSPTEE-------QIVKV 197
           +  +R+ M     +  ++          + + IR       +   T E        I+ +
Sbjct: 119 RDLVRQIMH--DPNVNVVATIPIRDVHPLVKEIRRLP-GAVLIELTPENRDVILEDILSL 175

Query: 198 LE 199
           LE
Sbjct: 176 LE 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	100.0
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	100.0
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	100.0
2chq_A	319	Replication factor C small subunit; DNA-binding pr	100.0
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	100.0
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	100.0
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	100.0
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	100.0
3pvs_A	447	Replication-associated recombination protein A; ma	100.0
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.97
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.96
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.96
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.95
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.95
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	99.93
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.92
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.91
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.9
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.9
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.9
3bos_A	242	Putative DNA replication factor; P-loop containing	99.89
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.89
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.87
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.87
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.86
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.86
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.86
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.85
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.85
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.84
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.84
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.83
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.83
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.83
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.82
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.82
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.82
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.82
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.82
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.81
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.81
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.81
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.81
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.8
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.79
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.78
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.78
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.77
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.77
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.76
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.76
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.75
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.75
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.75
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.75
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.75
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.74
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.73
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.73
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.73
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.71
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.7
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.7
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.7
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.68
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.68
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.68
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.68
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.67
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.65
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.62
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.6
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.58
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.57
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.55
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.54
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.52
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.51
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.51
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.5
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.48
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.44
3co5_A	143	Putative two-component system transcriptional RES	99.42
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.4
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.39
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.35
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.31
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.29
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.21
2fna_A	357	Conserved hypothetical protein; structural genomic	99.2
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.18
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	99.15
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	99.11
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.07
2qgz_A	308	Helicase loader, putative primosome component; str	99.05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.04
1tue_A	212	Replication protein E1; helicase, replication, E1E	99.04
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.03
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.01
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.0
1g6h_A	257	High-affinity branched-chain amino acid transport	98.97
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.96
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.96
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.95
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.94
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.93
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.92
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.92
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.92
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.92
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.91
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.91
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.9
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.89
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.88
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.84
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.84
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.84
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.8
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.8
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.8
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.79
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.78
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.78
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.75
3f8t_A	506	Predicted ATPase involved in replication control,	98.73
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.7
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.69
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.68
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.68
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.66
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.65
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.62
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.58
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.58
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.57
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.56
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.54
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.53
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.51
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.46
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.45
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.44
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.43
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.42
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.36
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.36
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.35
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.34
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.34
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.3
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.29
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.29
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.28
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.28
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.27
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.26
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.25
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.22
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.2
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.19
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.17
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.17
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.17
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.13
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.12
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.12
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.11
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.09
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.03
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.01
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.95
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.92
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.9
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.87
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.85
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.85
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.83
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.82
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.79
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.77
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.76
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.72
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.71
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.71
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.71
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.7
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.69
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.63
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	97.63
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	97.61
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.57
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.57
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	97.57
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.56
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.56
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.52
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.52
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.51
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.51
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.5
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.47
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.44
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.44
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.44
3io5_A	333	Recombination and repair protein; storage dimer, i	97.44
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.42
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.41
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.38
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.37
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.34
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.32
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.32
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.3
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.3
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.29
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.29
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.28
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.28
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.25
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.24
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.23
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.21
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.21
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.21
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.19
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.18
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.18
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.17
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.15
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.13
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	97.13
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.13
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.12
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.1
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	97.1
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.09
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.09
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.08
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.06
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.06
1via_A	175	Shikimate kinase; structural genomics, transferase	97.06
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.05
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.05
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.04
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.02
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.01
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.01
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.0
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.0
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.99
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.98
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.98
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	96.98
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.96
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.95
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.95
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.94
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.94
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.93
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.92
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.92
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.92
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.92
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.91
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.91
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.91
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.91
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.9
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.9
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.88
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.88
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.87
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.86
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.85
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.85
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.85
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.84
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.84
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.83
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.83
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.83
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.83
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.83
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.81
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.8
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.8
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.8
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.79
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.78
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.77
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.76
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.75
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.74
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	96.74
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.74
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.73
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.73
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.72
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.72
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.72
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.69
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	96.69
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	96.68
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.67
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.67
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.67
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.67
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.67
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.67
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.67
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.66
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	96.66
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.64
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.64
2og2_A	359	Putative signal recognition particle receptor; nuc	96.64
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.63
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.63
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.63
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.63
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.62
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.62
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.62
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.62
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.61
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.61
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.61
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.6
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.58
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.56
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.56
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.55
3h1t_A	590	Type I site-specific restriction-modification syst	96.55
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.54
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.54
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.54
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.53
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.52
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.52
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.48
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.48
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.48
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.48
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.45
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	96.43
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.43
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	96.42
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	96.41
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.39
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.36
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.33
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.32
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	96.32
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.31
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.31
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	96.31
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.3
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.29
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	96.27
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.26
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.25
3bor_A	237	Human initiation factor 4A-II; translation initiat	96.24
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	96.24
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.22
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	96.22
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.21
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.21
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.2
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.19
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.19
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.16
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.14
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.13
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.13
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.11
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.1
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.09
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	96.07
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.06
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	96.06
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.05
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.05
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	96.05
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	96.01
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.0
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.99
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.98
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.98
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.98
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.97
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	95.97
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.95
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	95.95
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.95
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	95.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.94
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.93
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.93
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.92
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.91
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.88
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.86
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.86
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.82
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	95.81
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.77
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	95.76
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.76
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.75
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.74
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.74
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.72
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.7
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.7
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.69
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.69
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	95.66
2whx_A	618	Serine protease/ntpase/helicase NS3; transcription	95.66
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	95.66
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.66
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.66
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.65
2xxa_A	433	Signal recognition particle protein; protein trans	95.65
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.6
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.58
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.58
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.57
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.57
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.55
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.55
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.55
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.53
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.53
2eyq_A	1151	TRCF, transcription-repair coupling factor; MFD, S	95.52
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.51
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.5
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.5
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.5
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.48
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	95.48
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.45
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	95.45
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.43
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	95.41
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.39
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.37
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.37
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.37
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.36
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.34
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.32
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.29
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.28
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.28
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.25
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	95.25
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.25
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	95.23
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.21
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.19
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.19
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.16
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.15
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.13
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.13
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.12
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	95.1
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.09
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	95.08
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.07
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.06
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.05
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.04
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.02
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.01
2z83_A	459	Helicase/nucleoside triphosphatase; hydrolase, mem	95.0
1jql_B	140	DNA polymerase III, delta subunit; processivity cl	94.99
1yks_A	440	Genome polyprotein [contains: flavivirin protease	94.97
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.95
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	94.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.93
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	94.91
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.88
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.87
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.84
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.83
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.82
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.81
2zpa_A	671	Uncharacterized protein YPFI; RNA modification enz	94.81
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.79
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.77
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.71
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.71
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.71
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	94.69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.66
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.65
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.63

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=7.6e-45  Score=338.56  Aligned_cols=323  Identities=37%  Similarity=0.685  Sum_probs=258.3

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHH-HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l-~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      |+|++||||++|++++|++.+++.++.++ ..++.+|++|+||+|+||||+++++++.+.++..+.+.+++..+ ..|+.
T Consensus         2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~-~~~~~   80 (354)
T 1sxj_E            2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF-VTASN   80 (354)
T ss_dssp             --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred             CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee-ccccc
Confidence            59999999999999999999999999999 88888889999999999999999999999898888877777666 44555


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCC----CCC-CCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID----TKG-KRGFKVLVLNEVDKLSREAQHSLRRTM  154 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~-~~~~~vliiDE~~~L~~~~~~~Ll~~l  154 (365)
                      .+..+  .......++.+.+.+.+......+++.++.+....++.    +++ .++++|+||||++.|+..+++.|++++
T Consensus        81 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~l  158 (354)
T 1sxj_E           81 RKLEL--NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM  158 (354)
T ss_dssp             -------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred             cccee--eeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence            54444  44444555666555444333224666666665444321    012 457899999999999999999999999


Q ss_pred             hhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Q 017844          155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       155 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~-~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      ++++.++.+|++|+++.++.++++|||..++|++|+.+++.+++..++.++|+.++ +++++.+++.++||+|+|++.++
T Consensus       159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~  238 (354)
T 1sxj_E          159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE  238 (354)
T ss_dssp             HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence            99988999999999999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHhcCC-CCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--hCCHHHH
Q 017844          234 TCRVQQY-PFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--RLDAEIK  310 (365)
Q Consensus       234 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~--~~~~~~~  310 (365)
                      .++.+.. .++.+..+...+++..+++++++++..+....+..+++.+++++..|.++..|+.++.+++.+  .++...+
T Consensus       239 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~l  318 (354)
T 1sxj_E          239 SMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNK  318 (354)
T ss_dssp             HHHHTTTTEECSSCCCCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHH
T ss_pred             HHHHhCCCCcCcCcCCCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHH
Confidence            9988765 466655566677888999999999988888899999999999999999999999999999887  7889999


Q ss_pred             HHHHHHHHHhhhhhHH
Q 017844          311 HEVCHWAAYYVSISFQ  326 (365)
Q Consensus       311 ~~~~~~~~~~~~~~~~  326 (365)
                      .++.+.++.+++++..
T Consensus       319 ~~~~~~l~~~d~~l~~  334 (354)
T 1sxj_E          319 SSIIEYSSVFDERLSL  334 (354)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=100.00  E-value=4.6e-37  Score=282.60  Aligned_cols=278  Identities=22%  Similarity=0.325  Sum_probs=222.1

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      .+|++||||++|++++|++++++.++.++..++.++ ++++||||+|||++++++++.+..   .               
T Consensus        14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~---~---------------   75 (324)
T 3u61_B           14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA---D---------------   75 (324)
T ss_dssp             SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE---E---------------
T ss_pred             chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC---C---------------
Confidence            479999999999999999999999999999999888 788899999999999999997621   0               


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHhhhc
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-REAQHSLRRTMEKYS  158 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-~~~~~~Ll~~le~~~  158 (365)
                                    ++++++++.+   ...+++.+..+....+.    .+++++++|||+|.++ .+.++.|++++++++
T Consensus        76 --------------~~~i~~~~~~---~~~i~~~~~~~~~~~~~----~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~  134 (324)
T 3u61_B           76 --------------MMFVNGSDCK---IDFVRGPLTNFASAASF----DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS  134 (324)
T ss_dssp             --------------EEEEETTTCC---HHHHHTHHHHHHHBCCC----SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG
T ss_pred             --------------EEEEcccccC---HHHHHHHHHHHHhhccc----CCCCeEEEEECCcccCcHHHHHHHHHHHHhCC
Confidence                          1223333322   22455656666655443    4577999999999999 999999999999998


Q ss_pred             CceeEEEEecCCCcccHHHhccceeEEecCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCHHHHHH
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQ-------IVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAIL  230 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~-------~~~iL~~~~~~~~~~i~~-~~~~~i~~~~~g~lr~ai~  230 (365)
                      .++.+|++||...++.++++|||.++.|++|+.++       +.+++..++.++++.+++ ++++.+++.++||+|.+++
T Consensus       135 ~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~  214 (324)
T 3u61_B          135 SNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG  214 (324)
T ss_dssp             GGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred             CCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence            89999999999999999999999999999999887       455566777889999998 9999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCHHHH
Q 017844          231 SFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLDAEIK  310 (365)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~~~~~  310 (365)
                      .|+.++ ..+.++.+..-......+.++++++.+..    .+..+++..+++++.   +|..++.++++++.+.++....
T Consensus       215 ~L~~~~-~~~~i~~~~v~~~~~~~~~i~~~~~~~~~----~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~~~~~~~l  286 (324)
T 3u61_B          215 ELDSYS-SKGVLDAGILSLVTNDRGAIDDVLESLKN----KDVKQLRALAPKYAA---DYSWFVGKLAEEIYSRVTPQSI  286 (324)
T ss_dssp             HHHHHG-GGTCBCC------------CHHHHHHHHT----TCHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHh-ccCCCCHHHHHHHhCCHHHHHHHHHHHHc----CCHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhCCHHHH
Confidence            999998 33345444311111113356677776654    456777788888776   8999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhH
Q 017844          311 HEVCHWAAYYVSISF  325 (365)
Q Consensus       311 ~~~~~~~~~~~~~~~  325 (365)
                      .++.+.++.+++++.
T Consensus       287 ~~i~~~l~~~d~~l~  301 (324)
T 3u61_B          287 IRMYEIVGENNQYHG  301 (324)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=7.5e-37  Score=282.94  Aligned_cols=288  Identities=28%  Similarity=0.459  Sum_probs=230.7

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      ++|++||||++|++++|++++++.|..+++.|+.+|++|+||+|+||||+++++++.+.+.....               
T Consensus        13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~---------------   77 (340)
T 1sxj_C           13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN---------------   77 (340)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH---------------
T ss_pred             CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccc---------------
Confidence            48999999999999999999999999999999999999999999999999999999886543110               


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                                  .+.+++..+..  ....+++.+..+......   ..++++|++|||+|.++.+++++|++++|+++.+
T Consensus        78 ------------~~~~~~~~~~~--~~~~ir~~i~~~~~~~~~---~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~  140 (340)
T 1sxj_C           78 ------------MVLELNASDDR--GIDVVRNQIKDFASTRQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKN  140 (340)
T ss_dssp             ------------HEEEECTTSCC--SHHHHHTHHHHHHHBCCS---SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             ------------eEEEEcCcccc--cHHHHHHHHHHHHhhccc---CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence                        01222222211  122455556655543221   1345799999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      +.||+++|...++.++++|||..+.|.+++.+++.+++.+++.++++.++++++..+++.++||+|++++.|+.++....
T Consensus       141 ~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~  220 (340)
T 1sxj_C          141 TRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLD  220 (340)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTC
T ss_pred             eEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999998999999999999999999999999999998765543


Q ss_pred             -----CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCC-HHHH
Q 017844          241 -----PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLD-AEIK  310 (365)
Q Consensus       241 -----~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~-~~~~~~~il~~l~~~l~~-~~~-~~~~  310 (365)
                           .++.+.  .+........++++++.+..    ++..++...+++++. .|.+|..++..+..++.. .++ ....
T Consensus       221 ~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~~----~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~  296 (340)
T 1sxj_C          221 NPDEDEISDDVIYECCGAPRPSDLKAVLKSILE----DDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETR  296 (340)
T ss_dssp             SSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHHT----SCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHH
T ss_pred             CcccccccHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence                 222221  11222345678888888876    355778888889987 999999999999988865 455 6777


Q ss_pred             HHHHHHHHHhhhhh
Q 017844          311 HEVCHWAAYYVSIS  324 (365)
Q Consensus       311 ~~~~~~~~~~~~~~  324 (365)
                      .++.+.++.++.++
T Consensus       297 ~~~~~~l~~~~~~l  310 (340)
T 1sxj_C          297 VHLLTKLADIEYSI  310 (340)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777777664

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=100.00  E-value=1.3e-35  Score=271.92  Aligned_cols=288  Identities=33%  Similarity=0.513  Sum_probs=227.1

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      ++|++||||++|++++|++.+++.+..++..++.+|++|+||+|+|||++++.+++.+.++....      .        
T Consensus         5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~------~--------   70 (319)
T 2chq_A            5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD------N--------   70 (319)
T ss_dssp             -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHH------H--------
T ss_pred             ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccC------C--------
Confidence            48999999999999999999999999999999888899999999999999999999876543210      0        


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                                   ++.+.+.+....  ..+++.+..+....+.   ..+++++++|||+|.++.+.++.|++++++++.+
T Consensus        71 -------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~  132 (319)
T 2chq_A           71 -------------FIEMNASDERGI--DVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKS  132 (319)
T ss_dssp             -------------CEEEETTSTTCT--TTSSHHHHHHHHSCCS---SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSS
T ss_pred             -------------eEEEeCccccCh--HHHHHHHHHHHhcCCC---CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCC
Confidence                         011111111110  1123444444433332   2356799999999999999999999999999889


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      +.+|++|+...++.+++++||..+.|++++.+++.+++..++.++|+.+++++++.+++.++||+|.+++.++.++....
T Consensus       133 ~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~  212 (319)
T 2chq_A          133 CRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE  212 (319)
T ss_dssp             EEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSS
T ss_pred             CeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887654


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 017844          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLL-NCVPPVVVLKRLLYELLK-RLDAEIKHEVCHW  316 (365)
Q Consensus       241 ~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~-~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~  316 (365)
                      .++.+.  .+........++++++++..    ++..++...+.+++. .|.+|..++..+..++.. .++.....++.+.
T Consensus       213 ~i~~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~  288 (319)
T 2chq_A          213 VVDADTIYQITATARPEEMTELIQTALK----GNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDK  288 (319)
T ss_dssp             CBCHHHHHHHTTCCCHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            444332  22233345678888888876    345677777888887 899999999998888765 4666666667776


Q ss_pred             HHHhhhhh
Q 017844          317 AAYYVSIS  324 (365)
Q Consensus       317 ~~~~~~~~  324 (365)
                      +...+.++
T Consensus       289 l~~~~~~l  296 (319)
T 2chq_A          289 LGEVDFRL  296 (319)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666553

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=100.00  E-value=1.3e-35  Score=277.97  Aligned_cols=335  Identities=19%  Similarity=0.226  Sum_probs=246.1

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|++||||++|++++|++++++.+..++..++.+| ++|+||+|+|||++++.+++.+.+.....         ..||+.
T Consensus         5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~   75 (373)
T 1jr3_A            5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGV   75 (373)
T ss_dssp             CHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSS
T ss_pred             HHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcc
Confidence            69999999999999999999999999999998888 89999999999999999999887654211         223333


Q ss_pred             ceeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      |..+  ......   ..+.+.+......  ..+++++..+.. .+    ..++++|+||||+|.++.+.++.|+++++++
T Consensus        76 ~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~----~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~  146 (373)
T 1jr3_A           76 CDNC--REIEQGRFVDLIEIDAASRTKV--EDTRDLLDNVQY-AP----ARGRFKVYLIDEVHMLSRHSFNALLKTLEEP  146 (373)
T ss_dssp             SHHH--HHHHTSCCSSCEEEETTCSCCS--SCHHHHHHHTTS-CC----SSSSSEEEEEECGGGSCHHHHHHHHHHHHSC
T ss_pred             cHHH--HHHhccCCCceEEecccccCCH--HHHHHHHHHHhh-cc----ccCCeEEEEEECcchhcHHHHHHHHHHHhcC
Confidence            3222  212222   2233332221111  124555554332 22    2456799999999999999999999999999


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.+|++++...++.+++++||..++|++++.+++.+++..++.++|+.+++++++.+++.++||+|.+.++++.+..
T Consensus       147 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~  226 (373)
T 1jr3_A          147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA  226 (373)
T ss_dssp             CSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred             CCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             cCC-CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h------
Q 017844          238 QQY-PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R------  304 (365)
Q Consensus       238 ~~~-~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~------  304 (365)
                      ++. .++.+.  .+........++++++++..+    +..++...+.++...|.++..++..+..++.+    +      
T Consensus       227 ~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~  302 (373)
T 1jr3_A          227 SGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEA----NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL  302 (373)
T ss_dssp             HTTTCBCHHHHHHHTTCCCHHHHHHHHHHHHHT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCC
T ss_pred             hcCCcccHHHHHHHhCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            543 233221  112222356678888888764    34556666778888999999998888877654    1      


Q ss_pred             --CCHHHHHHHHHHHHHhhhhhHHHHhhhcccCCCCCccccccccc-cccchhcccCC
Q 017844          305 --LDAEIKHEVCHWAAYYVSISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANSD  359 (365)
Q Consensus       305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (365)
                        +.+.....+...+..|+......++. .+.+....+|....+.+ +|+.|++++.-
T Consensus       303 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~-~l~~~~~~lk~~~~~~l~le~~ll~~~~~  359 (373)
T 1jr3_A          303 GNDMAAIELRMRELARTIPPTDIQLYYQ-TLLIGRKELPYAPDRRMGVEMTLLRALAF  359 (373)
T ss_dssp             CSGGGGTHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred             cccchhHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence              11233556667777777653333332 23444334556667777 99999988643

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=5.3e-35  Score=268.81  Aligned_cols=288  Identities=34%  Similarity=0.538  Sum_probs=227.8

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      ++|++||+|.+|++++|++++++.+..++..++.+|++|+||+|+|||++++.+++.+.++....               
T Consensus        13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~---------------   77 (327)
T 1iqp_A           13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRH---------------   77 (327)
T ss_dssp             SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHH---------------
T ss_pred             CchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccC---------------
Confidence            58999999999999999999999999999999988999999999999999999999875432100               


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                                  .++.+.+.+..  ....+++.+..+....+.   ..+++++++|||++.++.+.++.|++++++++.+
T Consensus        78 ------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~  140 (327)
T 1iqp_A           78 ------------NFLELNASDER--GINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSN  140 (327)
T ss_dssp             ------------HEEEEETTCHH--HHHTTHHHHHHHHHSCCG---GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             ------------ceEEeeccccC--chHHHHHHHHHHHhhCCc---CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCC
Confidence                        01222222110  001233444444443333   1256789999999999999999999999999889


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      +.||++++.+.++.+++.+||..+.|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++.++....
T Consensus       141 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~  220 (327)
T 1iqp_A          141 VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK  220 (327)
T ss_dssp             EEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred             CeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876654


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 017844          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHW  316 (365)
Q Consensus       241 ~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~  316 (365)
                      .++.+.  ..........++++++.+...    +...+.+.+++++ ..|.+|..++..+..++.+ .++.....++...
T Consensus       221 ~i~~~~v~~~~~~~~~~~i~~l~~~~~~~----~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~  296 (327)
T 1iqp_A          221 KITDENVFMVASRARPEDIREMMLLALKG----NFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADK  296 (327)
T ss_dssp             EECHHHHHHHTTCCCHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            443322  122233456778888888763    4566677788888 8899999999999998766 5777777777777


Q ss_pred             HHHhhhhh
Q 017844          317 AAYYVSIS  324 (365)
Q Consensus       317 ~~~~~~~~  324 (365)
                      +...+.++
T Consensus       297 l~~~~~~l  304 (327)
T 1iqp_A          297 IGEYNFRL  304 (327)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=7.6e-34  Score=264.01  Aligned_cols=292  Identities=27%  Similarity=0.471  Sum_probs=221.4

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .+|++||||.+|++++|++++++.+..++..+..+|++|+||||+||||+++++++.+.++....               
T Consensus        25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------------   89 (353)
T 1sxj_D           25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMK---------------   89 (353)
T ss_dssp             -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHT---------------
T ss_pred             ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccc---------------
Confidence            48999999999999999999999999999999888899999999999999999999875321100               


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCC-------CCCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPID-------TKGKRGFKVLVLNEVDKLSREAQHSLRRT  153 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~vliiDE~~~L~~~~~~~Ll~~  153 (365)
                                 ...+++.+.+...  ...+++.+..+.......       ....++++|++|||++.++...++.|++.
T Consensus        90 -----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~  156 (353)
T 1sxj_D           90 -----------SRILELNASDERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRT  156 (353)
T ss_dssp             -----------TSEEEECSSSCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHH
T ss_pred             -----------cceEEEccccccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHH
Confidence                       0012222222111  112233333333221100       00124568999999999999999999999


Q ss_pred             HhhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          154 MEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       154 le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      +++++.+++||++++.+..+.+++++||..+.|++++.+++..++..++.++++.+++++++.+++.++||+|.+++.++
T Consensus       157 le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~  236 (353)
T 1sxj_D          157 METYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ  236 (353)
T ss_dssp             HHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            99998889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC------CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Q 017844          234 TCRVQQY------PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--  303 (365)
Q Consensus       234 ~~~~~~~------~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~--  303 (365)
                      .++...+      .++.++  .+........++++++++..    ++...+...+++++..|.+|..|+..+.+++..  
T Consensus       237 ~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~  312 (353)
T 1sxj_D          237 SASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKS----GDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITND  312 (353)
T ss_dssp             HTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHS----CCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCS
T ss_pred             HHHHhcCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            8765432      233221  01111122456677777764    345667777888999999999999999998876  


Q ss_pred             hCCHHHHHHHHHHHHHhhhhh
Q 017844          304 RLDAEIKHEVCHWAAYYVSIS  324 (365)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~  324 (365)
                      .++......+...++..+.++
T Consensus       313 ~~~~~~~~~~~~~l~~~~~~l  333 (353)
T 1sxj_D          313 NFDTNFKNQISWLLFTTDSRL  333 (353)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHH
Confidence            467777777777777766654

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=8.3e-33  Score=253.71  Aligned_cols=286  Identities=23%  Similarity=0.353  Sum_probs=216.2

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      ++|++||+|.+|++++|++.+++.+..++..++.+|++|+||+|+|||++++.+++.+.++....               
T Consensus         9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~---------------   73 (323)
T 1sxj_B            9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYAD---------------   73 (323)
T ss_dssp             CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHH---------------
T ss_pred             CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccC---------------
Confidence            47999999999999999999999999999999988899999999999999999999875432110               


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                                  ..+.+.+.+..  ....+++.+..+...... . ..++++++||||++.++...++.|++++++++.+
T Consensus        74 ------------~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~-~-~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~  137 (323)
T 1sxj_B           74 ------------GVLELNASDDR--GIDVVRNQIKHFAQKKLH-L-PPGKHKIVILDEADSMTAGAQQALRRTMELYSNS  137 (323)
T ss_dssp             ------------HEEEECTTSCC--SHHHHHTHHHHHHHBCCC-C-CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT
T ss_pred             ------------CEEEecCcccc--ChHHHHHHHHHHHhcccc-C-CCCCceEEEEECcccCCHHHHHHHHHHHhccCCC
Confidence                        01222222211  122355555555432211 0 1334799999999999999999999999999889


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      +.+|++|+...++.++++|||..+.|++++.+++.+++..++.++|+.+++++++.+++.++||+|.+++.++.++....
T Consensus       138 ~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~  217 (323)
T 1sxj_B          138 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG  217 (323)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             ceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998875433


Q ss_pred             CCCCCC--CCCCCCHHHHHHHHHHHHHhccChhHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHh--CCHHHHHHHHH
Q 017844          241 PFKDNQ--AIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYE-LLLNCVPPVVVLKRLLYELLKR--LDAEIKHEVCH  315 (365)
Q Consensus       241 ~~~~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~-l~~~~~~~~~il~~l~~~l~~~--~~~~~~~~~~~  315 (365)
                      .++.+.  .+........++++++.       ++..++...+.. ++..|.++..++..+..++.+.  ++.....++.+
T Consensus       218 ~i~~~~v~~~~~~~~~~~i~~~~~~-------~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~  290 (323)
T 1sxj_B          218 LVNADNVFKIVDSPHPLIVKKMLLA-------SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIK  290 (323)
T ss_dssp             SBCHHHHHHHHTSCCHHHHHHHHSC-------SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred             CcCHHHHHHHHCCCCHHHHHHHHhc-------CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence            333221  01111122333433332       345667677777 7778999999988887766542  56766667766


Q ss_pred             HHHHhhhhh
Q 017844          316 WAAYYVSIS  324 (365)
Q Consensus       316 ~~~~~~~~~  324 (365)
                      .+...+.++
T Consensus       291 ~l~~~~~~l  299 (323)
T 1sxj_B          291 EIGLTHMRI  299 (323)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665553

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=100.00  E-value=3.1e-32  Score=258.97  Aligned_cols=321  Identities=17%  Similarity=0.195  Sum_probs=222.9

Q ss_pred             CcccccCCCCCCccccCHHHH---HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844            2 LWVDKYRPKTLDQVIVHQDIA---QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      +|+++|||++|++++||++++   +.+...+..++.++++|+|||||||||+|+++++.+.++           +     
T Consensus        15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-----------f-----   78 (447)
T 3pvs_A           15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-----------V-----   78 (447)
T ss_dssp             CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-----------E-----
T ss_pred             ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-----------e-----
Confidence            799999999999999999999   899999999998889999999999999999999965221           1     


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                                      +.+++...+   ...+++.+........     .+++.++||||+|.++...++.|++.+++  
T Consensus        79 ----------------~~l~a~~~~---~~~ir~~~~~a~~~~~-----~~~~~iLfIDEI~~l~~~~q~~LL~~le~--  132 (447)
T 3pvs_A           79 ----------------ERISAVTSG---VKEIREAIERARQNRN-----AGRRTILFVDEVHRFNKSQQDAFLPHIED--  132 (447)
T ss_dssp             ----------------EEEETTTCC---HHHHHHHHHHHHHHHH-----TTCCEEEEEETTTCC------CCHHHHHT--
T ss_pred             ----------------EEEEeccCC---HHHHHHHHHHHHHhhh-----cCCCcEEEEeChhhhCHHHHHHHHHHHhc--
Confidence                            111111111   1124444444332211     24568999999999999999999999997  


Q ss_pred             CceeEEEEecCCC--cccHHHhccceeEEecCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHcCCCHHHHH
Q 017844          159 ASCRLILCCNSSS--KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK-------EGLQLPSGFATRLAEKSNRSLRRAI  229 (365)
Q Consensus       159 ~~~~~Il~t~~~~--~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~-------~~~~i~~~~~~~i~~~~~g~lr~ai  229 (365)
                      ..+.+|++|+...  .+.+++.|||.++.|.+++.+++..++.+.+.+       .++.+++++++.+++.++||+|.++
T Consensus       133 ~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll  212 (447)
T 3pvs_A          133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL  212 (447)
T ss_dssp             TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred             CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence            3577888776543  688999999999999999999999999999886       5677999999999999999999999


Q ss_pred             HHHHHHHhcCC-------CCCCCC---CCCC-----CCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHH
Q 017844          230 LSFETCRVQQY-------PFKDNQ---AIPA-----MDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVL  294 (365)
Q Consensus       230 ~~l~~~~~~~~-------~~~~~~---~~~~-----~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il  294 (365)
                      +.|+.++..+.       .++.+.   .+..     ....+..++++.++.+.....+...+..++..++..|.+|..|.
T Consensus       213 n~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~  292 (447)
T 3pvs_A          213 NTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVA  292 (447)
T ss_dssp             HHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence            99999887654       122211   0000     00112344555555543333556778888899999999999999


Q ss_pred             HHHHHHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhhhcccCCCCCccccccccc-cccchh-cccCCCcccC
Q 017844          295 KRLLYELLKRLD---AEIKHEVCHWAAYYV----SISFQILFIVPLVDFPSPLECSAQAAY-IQPPLI-RANSDPVALH  364 (365)
Q Consensus       295 ~~l~~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~  364 (365)
                      +.+...-.+.+.   +.........+..++    .+-.-.|.+..++-..+||.|++-.+| --+..+ .-.+.||++|
T Consensus       293 rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~~~~~~~~~~vp~~  371 (447)
T 3pvs_A          293 RRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVH  371 (447)
T ss_dssp             HHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHSCCCCCCGG
T ss_pred             HHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhcCCCCCChH
Confidence            999998887543   332222222222222    222334455433334799999998888 233333 3457788888

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.97  E-value=1.7e-29  Score=232.65  Aligned_cols=298  Identities=18%  Similarity=0.167  Sum_probs=201.3

Q ss_pred             cCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc---cc
Q 017844           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS---SA   92 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~   92 (365)
                      -++++++.+...++.++.+| ++|+||+|+|||++++.+++.+.|.....         ..||+.|..|  ..+.   ..
T Consensus         6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---------~~~c~~c~~c--~~~~~~~~~   74 (334)
T 1a5t_A            6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---------HKSCGHCRGC--QLMQAGTHP   74 (334)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---------TBCCSCSHHH--HHHHHTCCT
T ss_pred             chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---------CCCCCCCHHH--HHHhcCCCC
Confidence            36888999999999999999 99999999999999999999998765321         2355555444  3222   23


Q ss_pred             cceecCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844           93 NHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus        93 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      +...+.+.+. .......++++++.+.. .+    ..++++|+||||+|.|+.+++++|+++||+++.++.||++|++++
T Consensus        75 d~~~~~~~~~~~~~~i~~ir~l~~~~~~-~~----~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~  149 (334)
T 1a5t_A           75 DYYTLAPEKGKNTLGVDAVREVTEKLNE-HA----RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE  149 (334)
T ss_dssp             TEEEECCCTTCSSBCHHHHHHHHHHTTS-CC----TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred             CEEEEeccccCCCCCHHHHHHHHHHHhh-cc----ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence            3344444311 11222345565554332 22    246789999999999999999999999999999999999999999


Q ss_pred             cccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 017844          172 KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAM  251 (365)
Q Consensus       172 ~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~~~~~~  251 (365)
                      +++++++|||+.++|++++.+++.++|..++     .+++++++.+++.++||+|+|+++++.....             
T Consensus       150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~-------------  211 (334)
T 1a5t_A          150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQ-------------  211 (334)
T ss_dssp             GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHH-------------
T ss_pred             hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHH-------------
Confidence            9999999999999999999999999998764     6789999999999999999999999865421             


Q ss_pred             CHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHhh
Q 017844          252 DWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRL----------DAEIKHEVCHWAAYYV  321 (365)
Q Consensus       252 ~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~----------~~~~~~~~~~~~~~~~  321 (365)
                       ....+.+.+..+........       +.+.+. +.++..++.++..++.+-+          ..+....+...+..++
T Consensus       212 -~~~~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a~~~~  282 (334)
T 1a5t_A          212 -ARETLCQALAYSVPSGDWYS-------LLAALN-HEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLS  282 (334)
T ss_dssp             -HHHHHHHHHHHHHHHCCCGG-------GHHHHC-STTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHHHSC
T ss_pred             -HHHHHHHHHHHHHhChHHHH-------HHHHHh-cccHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhCC
Confidence             11233444444433211111       111222 3467777777766655421          1222344455555565


Q ss_pred             hhhHHHHhhhcccCCCCCcc--ccccccc-cccchhcccC
Q 017844          322 SISFQILFIVPLVDFPSPLE--CSAQAAY-IQPPLIRANS  358 (365)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~  358 (365)
                      ..-...++. .+.+....++  ....+.. ++..+++++.
T Consensus       283 ~~~l~~~~~-~l~~~~~~l~~~~~~n~~l~le~ll~~l~~  321 (334)
T 1a5t_A          283 PSRLQAILG-DVCHIREQLMSVTGINRELLITDLLLRIEH  321 (334)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            442222222 1333333444  4455555 8888887764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.96  E-value=5.2e-28  Score=209.42  Aligned_cols=207  Identities=41%  Similarity=0.680  Sum_probs=169.6

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      ++|.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+.+.....               
T Consensus         5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~---------------   69 (226)
T 2chg_A            5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD---------------   69 (226)
T ss_dssp             CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGG---------------
T ss_pred             hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcccccc---------------
Confidence            47999999999999999999999999999988777799999999999999999999764322110               


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                                  ..+.+.+....  ....+.+.+..+......   ...++.+++|||++.++...++.|++.+++.+.+
T Consensus        70 ------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~  132 (226)
T 2chg_A           70 ------------NFIEMNASDER--GIDVVRHKIKEFARTAPI---GGAPFKIIFLDEADALTADAQAALRRTMEMYSKS  132 (226)
T ss_dssp             ------------GEEEEETTCTT--CHHHHHHHHHHHHTSCCS---TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             ------------ceEEecccccc--ChHHHHHHHHHHhcccCC---CccCceEEEEeChhhcCHHHHHHHHHHHHhcCCC
Confidence                        00111211111  111233444444433221   2356789999999999999999999999998888


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      +.+|++++....+.+++.+||..+.|++++.+++.+++...+.+.+..+++++++.+++.++||+|.+++.++.++..+
T Consensus       133 ~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~  211 (226)
T 2chg_A          133 CRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG  211 (226)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             CeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence            9999999999899999999999999999999999999999999999999999999999999999999999999988765

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.96  E-value=2.7e-27  Score=207.62  Aligned_cols=220  Identities=21%  Similarity=0.309  Sum_probs=168.5

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +|.++|+|.+|++++|++..++.+..++..++.++ ++|+||+|+||||+++.+++.+.+.....         ..++..
T Consensus        12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~---------~~~~~~   82 (250)
T 1njg_A           12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGV   82 (250)
T ss_dssp             CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC---------SSCCSC
T ss_pred             HHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCcc
Confidence            69999999999999999999999999999888766 99999999999999999999876543110         111121


Q ss_pred             ceeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           81 NIDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                      +..+  ......   ..+.+.....  .....+++.+..+..     .+..+++.+++|||++.++...++.|++.+++.
T Consensus        83 ~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~  153 (250)
T 1njg_A           83 CDNC--REIEQGRFVDLIEIDAASR--TKVEDTRDLLDNVQY-----APARGRFKVYLIDEVHMLSRHSFNALLKTLEEP  153 (250)
T ss_dssp             SHHH--HHHHTTCCSSEEEEETTCG--GGHHHHHHHHHSCCC-----SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC
T ss_pred             cHHH--HHHhccCCcceEEecCccc--ccHHHHHHHHHHhhh-----chhcCCceEEEEECcccccHHHHHHHHHHHhcC
Confidence            1111  111111   1122221111  111122222222111     112445689999999999999999999999988


Q ss_pred             cCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 017844          158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       158 ~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~  237 (365)
                      +.++.+|++++....+.+++.+||..+.|++++.+++.+++..++.+++..+++++++.+++.++|++|.+.++++.+..
T Consensus       154 ~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~  233 (250)
T 1njg_A          154 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA  233 (250)
T ss_dssp             CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            88899999999988999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             cC
Q 017844          238 QQ  239 (365)
Q Consensus       238 ~~  239 (365)
                      .+
T Consensus       234 ~~  235 (250)
T 1njg_A          234 SG  235 (250)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.95  E-value=3e-27  Score=213.84  Aligned_cols=238  Identities=13%  Similarity=0.142  Sum_probs=174.5

Q ss_pred             cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc-CCCCccceeccccceecCCCcceeccccccccccce
Q 017844           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF-GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHV   95 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (365)
                      ||+++++.|+..++.++.|+++|+||+|+|||++++++++... +..                           ...++.
T Consensus         1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~---------------------------~~~d~~   53 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP---------------------------KASDVL   53 (305)
T ss_dssp             ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC---------------------------CTTTEE
T ss_pred             ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc---------------------------cCCCEE
Confidence            7889999999999999855599999999999999999998521 100                           112223


Q ss_pred             ecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccH
Q 017844           96 ELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTE  175 (365)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~  175 (365)
                      .+.+++. ......++++++.+. ..+.    .++++|+||||+|.|+.+++++|+++||+|++++.||++|+++.++++
T Consensus        54 ~l~~~~~-~~~id~ir~li~~~~-~~p~----~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~  127 (305)
T 2gno_A           54 EIDPEGE-NIGIDDIRTIKDFLN-YSPE----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP  127 (305)
T ss_dssp             EECCSSS-CBCHHHHHHHHHHHT-SCCS----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred             EEcCCcC-CCCHHHHHHHHHHHh-hccc----cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChH
Confidence            4444321 122234677666554 3332    457899999999999999999999999999999999999999999999


Q ss_pred             HHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH-----------HhcCCCCCC
Q 017844          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC-----------RVQQYPFKD  244 (365)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~-----------~~~~~~~~~  244 (365)
                      +++||  +++|++++.+++.++|.+++   +  ++++++    +.+.||+|+|+++++..           ..++. ...
T Consensus       128 tI~SR--~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~-~~~  195 (305)
T 2gno_A          128 TIKSR--VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLET-EKL  195 (305)
T ss_dssp             HHHTT--SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHH
T ss_pred             HHHce--eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccc-HHH
Confidence            99999  99999999999999999887   3  567665    45799999999888632           12210 000


Q ss_pred             CCCCCCCCHHH--HHHHHHHHHHhccChhHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHH
Q 017844          245 NQAIPAMDWEE--FVFEIASDIMQEQSPKRLFQVRGKLYELLL--NCVPPVVVLKRLLYELLK  303 (365)
Q Consensus       245 ~~~~~~~~~~~--~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~--~~~~~~~il~~l~~~l~~  303 (365)
                      -..+.....+.  .++++++++..++.    .++.+.+++++.  .|.+|..++..+++.+..
T Consensus       196 v~~~~~~~~~~~~~v~~l~~ai~~~~~----~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l~~  254 (305)
T 2gno_A          196 LKKVLSKGLEGYLACRELLERFSKVES----KEFFALFDQVTNTITGKDAFLLIQRLTRIILH  254 (305)
T ss_dssp             TTTTTCSHHHHHHHHHHHHHHHHHSCG----GGHHHHHHHHHHHSCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCcchHHHHHHHHHHHCCCH----HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Confidence            11223333433  78999999998644    455666777877  898998888888888874

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.95  E-value=1.2e-27  Score=232.59  Aligned_cols=231  Identities=23%  Similarity=0.347  Sum_probs=164.3

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHc-----------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA   63 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~   63 (365)
                      .+|++||||++|++++|++.+++.+..++..                 +..++++|+||||+|||++|+++++++..   
T Consensus        27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~---  103 (516)
T 1sxj_A           27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY---  103 (516)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred             CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC---
Confidence            4799999999999999999999999999865                 12345999999999999999999997621   


Q ss_pred             ccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCC---------CCCCCCCceEE
Q 017844           64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI---------DTKGKRGFKVL  134 (365)
Q Consensus        64 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~vl  134 (365)
                      ..+.+++.                             +....  ..+.+.+........+         ......++.|+
T Consensus       104 ~~i~in~s-----------------------------~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl  152 (516)
T 1sxj_A          104 DILEQNAS-----------------------------DVRSK--TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI  152 (516)
T ss_dssp             EEEEECTT-----------------------------SCCCH--HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEE
T ss_pred             CEEEEeCC-----------------------------CcchH--HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEE
Confidence            11222221                             11000  0011111100000000         00113466899


Q ss_pred             EEeCCCCCCHHHH---HHHHHHHhhhcCceeEEEEecCCC-cccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCC
Q 017844          135 VLNEVDKLSREAQ---HSLRRTMEKYSASCRLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (365)
Q Consensus       135 iiDE~~~L~~~~~---~~Ll~~le~~~~~~~~Il~t~~~~-~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~  210 (365)
                      ||||+|.+....+   +.|++++++.  +..+|++++... ...+++++||..+.|++|+.+++.+++..++.++++.++
T Consensus       153 iIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~  230 (516)
T 1sxj_A          153 IMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD  230 (516)
T ss_dssp             EECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             EEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence            9999999976433   7788888764  456888887654 445679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCCCC--CC---CCCHHHHHHHHHHHHHhc
Q 017844          211 SGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQA--IP---AMDWEEFVFEIASDIMQE  267 (365)
Q Consensus       211 ~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~~~~~~~--~~---~~~~~~~i~~~~~~i~~~  267 (365)
                      +++++.|++.++||+|.+++.|+.++.....++.+..  +.   ..+....++++++.++..
T Consensus       231 ~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~  292 (516)
T 1sxj_A          231 PNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDG  292 (516)
T ss_dssp             TTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBG
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcC
Confidence            9999999999999999999999998876665554431  00   012223567777777764

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=99.93  E-value=2.1e-26  Score=213.02  Aligned_cols=293  Identities=14%  Similarity=0.070  Sum_probs=208.5

Q ss_pred             HHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcC
Q 017844           25 LKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG  103 (365)
Q Consensus        25 l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (365)
                      +...++ ++.+| ++|+||+|+||++.++.+++.+.+.+...       +         .          .+.+.. +  
T Consensus         9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~-------~---------~----------~~~~~~-~--   58 (343)
T 1jr3_D            9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE-------H---------H----------TFSIDP-N--   58 (343)
T ss_dssp             HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCE-------E---------E----------EEECCT-T--
T ss_pred             HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCe-------e---------E----------EEEecC-C--
Confidence            444555 45666 99999999999999999999775432100       0         0          011111 1  


Q ss_pred             ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCC-CCHHHHHHHHHHHhhhcCceeEEEEecCC------CcccHH
Q 017844          104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSS------SKVTEA  176 (365)
Q Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~-L~~~~~~~Ll~~le~~~~~~~~Il~t~~~------~~l~~~  176 (365)
                          ..+++++..+.. .++    .++++|++|||++. ++.+++++|+++++++++++.+|++++..      .++.++
T Consensus        59 ----~~~~~l~~~~~~-~pl----f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~  129 (343)
T 1jr3_D           59 ----TDWNAIFSLCQA-MSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTA  129 (343)
T ss_dssp             ----CCHHHHHHHHHH-HHH----CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHH
T ss_pred             ----CCHHHHHHHhcC-cCC----ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHH
Confidence                124555555433 332    45679999999999 99999999999999999999999999874      358899


Q ss_pred             HhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCCCC--CCCCCC
Q 017844          177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY--PFKDNQ--AIPAMD  252 (365)
Q Consensus       177 l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~--~~~~~~--~~~~~~  252 (365)
                      +.|||.++.|.+++.+++..++++++.++|+.+++++++.+++.++||+|.+.+.|++++.+.+  .++.++  .+....
T Consensus       130 i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~  209 (343)
T 1jr3_D          130 LANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA  209 (343)
T ss_dssp             HTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred             HHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999999988642  222221  000011


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----hC-----CH-----------HHHHH
Q 017844          253 WEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----RL-----DA-----------EIKHE  312 (365)
Q Consensus       253 ~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~~-----~~-----------~~~~~  312 (365)
                      .+..++++++++..+    +..++...+..++..|.+|..++..+..++..    ..     +.           .....
T Consensus       210 ~~~~if~l~~ai~~~----d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~  285 (343)
T 1jr3_D          210 AHFTPFHWVDALLMG----KSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGM  285 (343)
T ss_dssp             CCCCHHHHHHHHTTS----CHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHH
T ss_pred             hcCCHHHHHHHHHCC----CHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHH
Confidence            123577888888874    34556666777778899999999988887765    11     11           11234


Q ss_pred             HHHHHHHhhhh-hHHHHhhhcccCCCCCcccc--ccccc-cccchhcccCCCcc
Q 017844          313 VCHWAAYYVSI-SFQILFIVPLVDFPSPLECS--AQAAY-IQPPLIRANSDPVA  362 (365)
Q Consensus       313 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~  362 (365)
                      +.+.+..|+.. +.+.+-.  +.+.....|++  .++.+ +|..+++++..+.+
T Consensus       286 ~~~~~~~~s~~~L~~~l~~--l~~~d~~lK~~~~~~~~~~le~l~l~l~~~~~~  337 (343)
T 1jr3_D          286 MGEALNRLSQTQLRQAVQL--LTRTELTLKQDYGQSVWAELEGLSLLLCHKPLA  337 (343)
T ss_dssp             HHHHHHHSCHHHHHHHHHH--HHHHHHHHHHSSCSCHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHcCCHHHHHHHHHH--HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCC
Confidence            45556667655 3333322  44444456664  34545 99999999876544

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.92  E-value=1.1e-23  Score=194.31  Aligned_cols=191  Identities=20%  Similarity=0.290  Sum_probs=148.3

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      .|.+||+|.+|++++|++.+++.+..++..     ...++++|+||+|||||++|+++++.+.++   .+.+++.     
T Consensus        18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~---~~~~~~~-----   89 (338)
T 3pfi_A           18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN---IKTTAAP-----   89 (338)
T ss_dssp             -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC---EEEEEGG-----
T ss_pred             hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEecch-----
Confidence            599999999999999999999998888864     333459999999999999999999875322   1111110     


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                                              ...  ....+...   +..        ..+..+++|||++.+....++.|++.+++
T Consensus        90 ------------------------~~~--~~~~~~~~---~~~--------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~  132 (338)
T 3pfi_A           90 ------------------------MIE--KSGDLAAI---LTN--------LSEGDILFIDEIHRLSPAIEEVLYPAMED  132 (338)
T ss_dssp             ------------------------GCC--SHHHHHHH---HHT--------CCTTCEEEEETGGGCCHHHHHHHHHHHHT
T ss_pred             ------------------------hcc--chhHHHHH---HHh--------ccCCCEEEEechhhcCHHHHHHHHHHHHh
Confidence                                    000  11112222   211        23457999999999999999999999987


Q ss_pred             hcC------------------ceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844          157 YSA------------------SCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (365)
Q Consensus       157 ~~~------------------~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i  217 (365)
                      ...                  .+.+|++||....+.+++++|| ..+.|++|+.+++..++...+...++.+++++++.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l  212 (338)
T 3pfi_A          133 YRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEI  212 (338)
T ss_dssp             SCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred             ccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            431                  2678889999888999999999 799999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHh
Q 017844          218 AEKSNRSLRRAILSFETCRV  237 (365)
Q Consensus       218 ~~~~~g~lr~ai~~l~~~~~  237 (365)
                      ++.+.|++|.+.+.++.+..
T Consensus       213 ~~~~~G~~r~l~~~l~~~~~  232 (338)
T 3pfi_A          213 AKRSRSTPRIALRLLKRVRD  232 (338)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999998643

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.91  E-value=1.4e-23  Score=195.97  Aligned_cols=234  Identities=18%  Similarity=0.212  Sum_probs=153.2

Q ss_pred             CcccccCCCC-CCccccCHHHHHH---HHHHHHcCCCC--eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844            2 LWVDKYRPKT-LDQVIVHQDIAQN---LKKLVTEQDCP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (365)
Q Consensus         2 ~w~~k~rP~~-~~~iig~~~~~~~---l~~~l~~~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~   75 (365)
                      .+.++++|.. |++++|++.+++.   +...+..+..+  +++|+||||+|||++|+++++.+.+.. ..+.+++..+ .
T Consensus        32 ~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~-~~~~~~~~~~-~  109 (368)
T 3uk6_A           32 GLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDT-PFTAIAGSEI-F  109 (368)
T ss_dssp             CBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSC-CEEEEEGGGG-S
T ss_pred             CcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccC-Ccccccchhh-h
Confidence            4568899998 9999999988765   55566666664  599999999999999999999885432 1122222111 0


Q ss_pred             cCCCcceecccccc--------------------------ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCC
Q 017844           76 DAGSRNIDLELTTL--------------------------SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKR  129 (365)
Q Consensus        76 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  129 (365)
                      .......+.....+                          .......+.....+. ....+++.+...............
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~g~~~~  188 (368)
T 3uk6_A          110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE-IKSEVREQINAKVAEWREEGKAEI  188 (368)
T ss_dssp             CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC---
T ss_pred             hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccc-cHHHHHHHHHHHHHHhhhhccccc
Confidence            00000000000000                          000000000000000 011233333332221100000011


Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEec------------CCCcccHHHhccceeEEecCCCHHHHHHH
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCN------------SSSKVTEAIRSRCLNIRINSPTEEQIVKV  197 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~------------~~~~l~~~l~sR~~~i~~~~~~~~~~~~i  197 (365)
                      .+.|+||||+|.++.+.++.|++.++++...+ ++++++            .+..++++++|||..+.|++|+.+++.++
T Consensus       189 ~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i  267 (368)
T 3uk6_A          189 IPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQI  267 (368)
T ss_dssp             CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHH
T ss_pred             cCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHH
Confidence            24699999999999999999999999876554 444444            24568899999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Q 017844          198 LEFIAKKEGLQLPSGFATRLAEKSN-RSLRRAILSFETCRVQQ  239 (365)
Q Consensus       198 L~~~~~~~~~~i~~~~~~~i~~~~~-g~lr~ai~~l~~~~~~~  239 (365)
                      ++.++..+++.+++++++.+++.+. ||+|.++++++.++..+
T Consensus       268 l~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A  310 (368)
T 3uk6_A          268 LRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVC  310 (368)
T ss_dssp             HHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998 99999999999876553

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.90  E-value=1.2e-22  Score=186.21  Aligned_cols=194  Identities=23%  Similarity=0.298  Sum_probs=150.5

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc----C-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      +|.+||+|.+|++++|++.+++.+..++..    + ...+++|+||+|+|||++|+++++.+.++.   +.++       
T Consensus         1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-------   70 (324)
T 1hqc_A            1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-------   70 (324)
T ss_dssp             ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-------
T ss_pred             CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-------
Confidence            478999999999999999999888887753    2 334599999999999999999999763211   1111       


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                                            +....  .   ..++...+..  .     ..+..+++|||++.++...++.|++.+++
T Consensus        71 ----------------------~~~~~--~---~~~l~~~l~~--~-----~~~~~~l~lDEi~~l~~~~~~~L~~~l~~  116 (324)
T 1hqc_A           71 ----------------------GPAIE--K---PGDLAAILAN--S-----LEEGDILFIDEIHRLSRQAEEHLYPAMED  116 (324)
T ss_dssp             ----------------------TTTCC--S---HHHHHHHHTT--T-----CCTTCEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred             ----------------------ccccC--C---hHHHHHHHHH--h-----ccCCCEEEEECCcccccchHHHHHHHHHh
Confidence                                  11110  0   1122222221  0     13457999999999999999999999987


Q ss_pred             hc------------------CceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844          157 YS------------------ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (365)
Q Consensus       157 ~~------------------~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i  217 (365)
                      ..                  .++.+|++|+....+.+++.+|| .++.|++|+.+++..++...+...+..+++++++.+
T Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l  196 (324)
T 1hqc_A          117 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEI  196 (324)
T ss_dssp             SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred             hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            53                  24679999999989999999999 599999999999999999999988999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhcC
Q 017844          218 AEKSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       218 ~~~~~g~lr~ai~~l~~~~~~~  239 (365)
                      ++.++|++|.+.++++.+...+
T Consensus       197 ~~~~~G~~r~l~~~l~~~~~~a  218 (324)
T 1hqc_A          197 GRRSRGTMRVAKRLFRRVRDFA  218 (324)
T ss_dssp             HHHSCSCHHHHHHHHHHHTTTS
T ss_pred             HHHccCCHHHHHHHHHHHHHHH
Confidence            9999999999999999886554

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.90  E-value=1.7e-22  Score=193.59  Aligned_cols=106  Identities=21%  Similarity=0.303  Sum_probs=97.9

Q ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEe---------cC----CCcccHHHhccceeEEecCCCHHHHHHHH
Q 017844          132 KVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCC---------NS----SSKVTEAIRSRCLNIRINSPTEEQIVKVL  198 (365)
Q Consensus       132 ~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t---------~~----~~~l~~~l~sR~~~i~~~~~~~~~~~~iL  198 (365)
                      +|++|||+|.|+.+++++|+++||+++.+ .||+++         ++    +..++++++|||..+.|++++.+++.++|
T Consensus       297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL  375 (456)
T 2c9o_A          297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII  375 (456)
T ss_dssp             CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred             eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence            69999999999999999999999999888 577788         54    66899999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 017844          199 EFIAKKEGLQLPSGFATRLAEKS-NRSLRRAILSFETCRVQ  238 (365)
Q Consensus       199 ~~~~~~~~~~i~~~~~~~i~~~~-~g~lr~ai~~l~~~~~~  238 (365)
                      +.++..+++.++++++..+++.+ .|++|.|+++++.+...
T Consensus       376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~  416 (456)
T 2c9o_A          376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLL  416 (456)
T ss_dssp             HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999 99999999999987443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.90  E-value=3e-23  Score=197.48  Aligned_cols=275  Identities=14%  Similarity=0.218  Sum_probs=144.1

Q ss_pred             cCCC-CCCccc-c--CHHHHHHHHHHHHcCC-CCeEEEECCCCCcHHHHHHHHHHHhcCC--CCccceeccccceecCCC
Q 017844            7 YRPK-TLDQVI-V--HQDIAQNLKKLVTEQD-CPHLLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         7 ~rP~-~~~~ii-g--~~~~~~~l~~~l~~~~-~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~i~~~~~~~~~~~~~   79 (365)
                      ..|. +|++++ |  +..+...+........ .++++|+||+|+||||+++++++.+...  ....+++++..+      
T Consensus        98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~------  171 (440)
T 2z4s_A           98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF------  171 (440)
T ss_dssp             CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH------
T ss_pred             CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH------
Confidence            4454 899988 5  4555666676666543 4459999999999999999999977432  111122211111      


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCC--CCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHh
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP--IDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTME  155 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le  155 (365)
                                                    ..++...+.....  +......++.+++|||++.+..  ..++.|+.+++
T Consensus       172 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~  221 (440)
T 2z4s_A          172 ------------------------------LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFN  221 (440)
T ss_dssp             ------------------------------HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHH
T ss_pred             ------------------------------HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHH
Confidence                                          0011111110000  0000011457999999999875  78888999998


Q ss_pred             hhc-CceeEEEEecCCCc----ccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Q 017844          156 KYS-ASCRLILCCNSSSK----VTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRR  227 (365)
Q Consensus       156 ~~~-~~~~~Il~t~~~~~----l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~  227 (365)
                      ... .+..+|++|+.+..    +.++++|||   ..+.+++|+.+++.+++.+.+...++.+++++++.|+..++||+|.
T Consensus       222 ~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~  301 (440)
T 2z4s_A          222 ELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRR  301 (440)
T ss_dssp             HHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHH
T ss_pred             HHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence            754 34567777776543    789999999   6899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHH-----hccC-hhHHHHHHHHHHHHHHcCCC------hHHHHH
Q 017844          228 AILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIM-----QEQS-PKRLFQVRGKLYELLLNCVP------PVVVLK  295 (365)
Q Consensus       228 ai~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~-----~~~~-~~~~~~~~~~l~~l~~~~~~------~~~il~  295 (365)
                      +.+.|+.+...+...  ...++..+    +.+.+..+.     +..+ .+.+.+..+.+|++....+.      .....+
T Consensus       302 l~~~L~~~~~~a~~~--~~~It~~~----~~~~l~~~~~~~~~~~i~~~~~i~~~v~~~y~i~~~~~~s~~r~~~~~~~r  375 (440)
T 2z4s_A          302 LRGAIIKLLVYKETT--GKEVDLKE----AILLLKDFIKPNRVKAMDPIDELIEIVAKVTGVPREEILSNSRNVKALTAR  375 (440)
T ss_dssp             HHHHHHHHHHHHHHS--SSCCCHHH----HHHHTSTTTCC----------------------------------------
T ss_pred             HHHHHHHHHHHHHHh--CCCCCHHH----HHHHHHHHhhccccccCChHHHHHHHHHHHhCCCHHHhcCccCCcccchHH
Confidence            999999877654311  11122222    222222211     1122 34455556677776533221      112367


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhh
Q 017844          296 RLLYELLKRLDAEIKHEVCHWAAYYVSIS  324 (365)
Q Consensus       296 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  324 (365)
                      ++++++.+.++..+.++++..+ +.+|..
T Consensus       376 ~i~~yl~r~l~~~s~~~IG~~~-~rdhst  403 (440)
T 2z4s_A          376 RIGMYVAKNYLKSSLRTIAEKF-NRSHPV  403 (440)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHhCCCHHHHHHHh-CCChhH
Confidence            8889999999999999999999 888873

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.89  E-value=2.7e-22  Score=175.64  Aligned_cols=194  Identities=16%  Similarity=0.239  Sum_probs=148.8

Q ss_pred             CcccccCC-CCCCcccc---CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844            2 LWVDKYRP-KTLDQVIV---HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus         2 ~w~~k~rP-~~~~~iig---~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      +|..+++| .+|++++|   ++.+++.+..++..+..++++|+||+|+||||+++.+++.+........++++..+    
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~----   91 (242)
T 3bos_A           16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH----   91 (242)
T ss_dssp             EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG----
T ss_pred             CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH----
Confidence            58899999 79999997   36888899988877666679999999999999999999987544322222222111    


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHh
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA--QHSLRRTME  155 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~--~~~Ll~~le  155 (365)
                                       ..      ...      +.+.           ...++.+++|||++.+....  ++.|+..++
T Consensus        92 -----------------~~------~~~------~~~~-----------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~  131 (242)
T 3bos_A           92 -----------------AS------IST------ALLE-----------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYN  131 (242)
T ss_dssp             -----------------GG------SCG------GGGT-----------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHH
T ss_pred             -----------------HH------HHH------HHHH-----------hccCCCEEEEeccccccCCHHHHHHHHHHHH
Confidence                             00      000      0000           01235799999999887655  788888887


Q ss_pred             hhcCce--eEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q 017844          156 KYSASC--RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLR  226 (365)
Q Consensus       156 ~~~~~~--~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr  226 (365)
                      ......  .+|++++...    ...+++.+||   ..+.|++|+.+++.+++...+...++.+++++++.+++.++||+|
T Consensus       132 ~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r  211 (242)
T 3bos_A          132 RVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLR  211 (242)
T ss_dssp             HHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHH
T ss_pred             HHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHH
Confidence            754332  4888887554    3568999999   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcC
Q 017844          227 RAILSFETCRVQQ  239 (365)
Q Consensus       227 ~ai~~l~~~~~~~  239 (365)
                      .+.+.++.++..+
T Consensus       212 ~l~~~l~~~~~~a  224 (242)
T 3bos_A          212 TLFDVLDRLDKAS  224 (242)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.89  E-value=1.3e-21  Score=180.02  Aligned_cols=191  Identities=20%  Similarity=0.279  Sum_probs=146.2

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcC-----CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQ-----DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~-----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      |+++++|++|++++|++.+++.+...+..+     ...+++|+||||+||||+++++++.+.++..   ...+..     
T Consensus        15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg~~-----   86 (334)
T 1in4_A           15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSGPV-----   86 (334)
T ss_dssp             --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEETTT-----
T ss_pred             HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEechH-----
Confidence            599999999999999999999998888643     3345999999999999999999997733110   000000     


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY  157 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~  157 (365)
                                                ......+.....   .        .....|++|||++.+.+..++.|+..++..
T Consensus        87 --------------------------~~~~~~l~~~~~---~--------~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~  129 (334)
T 1in4_A           87 --------------------------LVKQGDMAAILT---S--------LERGDVLFIDEIHRLNKAVEELLYSAIEDF  129 (334)
T ss_dssp             --------------------------CCSHHHHHHHHH---H--------CCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred             --------------------------hcCHHHHHHHHH---H--------ccCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence                                      000111222111   1        123479999999999998888888877654


Q ss_pred             c------------------CceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017844          158 S------------------ASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (365)
Q Consensus       158 ~------------------~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~  218 (365)
                      .                  ..+.++.+++.+..+.+++++||. .+.|.+++.+++.+++++.+...++.++++++..|+
T Consensus       130 ~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia  209 (334)
T 1in4_A          130 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIA  209 (334)
T ss_dssp             CCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred             ccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence            2                  124567778888889999999995 789999999999999999999899999999999999


Q ss_pred             HHcCCCHHHHHHHHHHHHhc
Q 017844          219 EKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       219 ~~~~g~lr~ai~~l~~~~~~  238 (365)
                      +.+.|++|.|+++|+.+...
T Consensus       210 ~~~~G~~R~a~~ll~~~~~~  229 (334)
T 1in4_A          210 KRSRGTPRIAIRLTKRVRDM  229 (334)
T ss_dssp             HTSTTCHHHHHHHHHHHHHH
T ss_pred             HhcCCChHHHHHHHHHHHHH
Confidence            99999999999999876543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.87  E-value=1.4e-20  Score=176.88  Aligned_cols=196  Identities=18%  Similarity=0.247  Sum_probs=143.9

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~   69 (365)
                      -|+++|+|.+|++++|++.+++.+..++..            ....++||+||+|||||++|+++++++..   ..+.++
T Consensus       104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~---~~~~v~  180 (389)
T 3vfd_A          104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA---TFFNIS  180 (389)
T ss_dssp             TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEC
T ss_pred             hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC---cEEEee
Confidence            499999999999999999999999988731            12345999999999999999999987522   112222


Q ss_pred             cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC-------
Q 017844           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL-------  142 (365)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L-------  142 (365)
                      +..+                     ..    .........++..+.....         ..+.||+|||+|.|       
T Consensus       181 ~~~l---------------------~~----~~~g~~~~~~~~~~~~a~~---------~~~~il~iDEid~l~~~~~~~  226 (389)
T 3vfd_A          181 AASL---------------------TS----KYVGEGEKLVRALFAVARE---------LQPSIIFIDQVDSLLCERREG  226 (389)
T ss_dssp             SCCC--------------------------------CHHHHHHHHHHHHH---------SSSEEEEEETGGGGC------
T ss_pred             HHHh---------------------hc----cccchHHHHHHHHHHHHHh---------cCCeEEEEECchhhcccCCCc
Confidence            2111                     00    0000111223344444332         23479999999987       


Q ss_pred             ----CHHHHHHHHHHHhhh----cCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 017844          143 ----SREAQHSLRRTMEKY----SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGF  213 (365)
Q Consensus       143 ----~~~~~~~Ll~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~  213 (365)
                          ....++.|+..++..    ..++.+|.+||.+..+.+++++||. .+.|+.|+.+++..++..++...+..++++.
T Consensus       227 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~  306 (389)
T 3vfd_A          227 EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKE  306 (389)
T ss_dssp             --CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHH
T ss_pred             cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHH
Confidence                244566777777753    3457888899998899999999995 8999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHH
Q 017844          214 ATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       214 ~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      +..+++.+.|..+..+..|-.
T Consensus       307 ~~~la~~~~g~~~~~l~~L~~  327 (389)
T 3vfd_A          307 LAQLARMTDGYSGSDLTALAK  327 (389)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHH
Confidence            999999999988877765543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.87  E-value=2.5e-21  Score=177.57  Aligned_cols=260  Identities=15%  Similarity=0.184  Sum_probs=171.8

Q ss_pred             CCCCccc-c--CHHHHHHHHHHHHcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844           10 KTLDQVI-V--HQDIAQNLKKLVTEQD--CPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus        10 ~~~~~ii-g--~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      .+|++++ |  +..+...++.++....  .++++|+||||+||||+++++++.+.......+++++..+           
T Consensus         8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~-----------   76 (324)
T 1l8q_A            8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF-----------   76 (324)
T ss_dssp             CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-----------
T ss_pred             CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH-----------
Confidence            4789987 4  5666777777776642  3459999999999999999999977433222222222111           


Q ss_pred             cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhh-cCce
Q 017844           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--EAQHSLRRTMEKY-SASC  161 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~-~~~~  161 (365)
                           . ......       ........+....           .++.+++|||++.+..  ..++.++..++.. ..+.
T Consensus        77 -----~-~~~~~~-------~~~~~~~~~~~~~-----------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~  132 (324)
T 1l8q_A           77 -----A-QAMVEH-------LKKGTINEFRNMY-----------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK  132 (324)
T ss_dssp             -----H-HHHHHH-------HHHTCHHHHHHHH-----------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             -----H-HHHHHH-------HHcCcHHHHHHHh-----------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCC
Confidence                 0 000000       0000011111111           1247999999999875  6788888888764 3345


Q ss_pred             eEEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844          162 RLILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       162 ~~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      .+|++++.+.    .+.+++.+|+   ..+.|++ +.+++.+++...+...++.+++++++.+++.+ ||+|.+.+.++.
T Consensus       133 ~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~  210 (324)
T 1l8q_A          133 QIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKL  210 (324)
T ss_dssp             EEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred             eEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHH
Confidence            6777777554    4789999999   7899999 99999999999999999999999999999999 999999999998


Q ss_pred             HHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHH------HcCCChHHHHHHHHHHHHHhCCH
Q 017844          235 CRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQ-SPKRLFQVRGKLYELL------LNCVPPVVVLKRLLYELLKRLDA  307 (365)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~-~~~~~~~~~~~l~~l~------~~~~~~~~il~~l~~~l~~~~~~  307 (365)
                      ++..+.              ..+. + .. .... +...+.++...+|++.      ..+..+....+++++++.+.+..
T Consensus       211 ~~~~~~--------------~~l~-~-~~-~~~i~t~~~i~~~~~~~~~~~~~~i~s~~~~~~~~~~r~i~~~l~r~~~~  273 (324)
T 1l8q_A          211 IKLKGF--------------EGLE-R-KE-RKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCS  273 (324)
T ss_dssp             HHHHCH--------------HHHH-H-HH-HHHHHHHHHHHHHHHHHHSCCHHHHSSCCCCSSSHHHHHHHHHHHHHHHC
T ss_pred             HHHcCH--------------HHhc-c-cc-ccCCCCHHHHHHHHHHHhCCCHHHHhcCCCCCccchHHHHHHHHHHHHhC
Confidence            876611              0000 0 00 0001 1233444444444322      12344555688889998886666


Q ss_pred             HHHHHHHHHHHHhhhh
Q 017844          308 EIKHEVCHWAAYYVSI  323 (365)
Q Consensus       308 ~~~~~~~~~~~~~~~~  323 (365)
                      .+.++++...+..+|.
T Consensus       274 ~s~~~ig~~~g~~~~~  289 (324)
T 1l8q_A          274 ASLIEIARAFKRKDHT  289 (324)
T ss_dssp             CCHHHHHHHSSCCCST
T ss_pred             CCHHHHHHHhCCCCch
Confidence            6778888888766776

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.86  E-value=3.8e-20  Score=167.49  Aligned_cols=197  Identities=17%  Similarity=0.236  Sum_probs=144.1

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~   69 (365)
                      .|+++++|.+|++++|++.+++.+..++..            ....+++|+||||||||++|+++++.+.++   .+.++
T Consensus        10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~---~~~i~   86 (297)
T 3b9p_A           10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT---FLNIS   86 (297)
T ss_dssp             TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE---EEEEE
T ss_pred             HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEee
Confidence            488999999999999999999999988742            123349999999999999999999976321   11122


Q ss_pred             cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC------
Q 017844           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------  143 (365)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------  143 (365)
                      +..+                     ..   ...+ ......+..+.....         ..+.+++|||++.+.      
T Consensus        87 ~~~l---------------------~~---~~~~-~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~  132 (297)
T 3b9p_A           87 AASL---------------------TS---KYVG-DGEKLVRALFAVARH---------MQPSIIFIDEVDSLLSERSSS  132 (297)
T ss_dssp             STTT---------------------SS---SSCS-CHHHHHHHHHHHHHH---------TCSEEEEEETGGGTSBCC---
T ss_pred             HHHH---------------------hh---cccc-hHHHHHHHHHHHHHH---------cCCcEEEeccHHHhccccccC
Confidence            1111                     00   0001 111223333333322         234799999998773      


Q ss_pred             -----HHHHHHHHHHHhhhc-----CceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844          144 -----REAQHSLRRTMEKYS-----ASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       144 -----~~~~~~Ll~~le~~~-----~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~  212 (365)
                           ...++.|+..++..+     .++.+|.+||.+..+++++++|| ..+.++.|+.++...++..++.+.+..++++
T Consensus       133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~  212 (297)
T 3b9p_A          133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTE  212 (297)
T ss_dssp             --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHH
T ss_pred             cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHH
Confidence                 345667888888754     34778888999889999999999 5899999999999999999998888889999


Q ss_pred             HHHHHHHHcCCCHHHHH-HHHHHH
Q 017844          213 FATRLAEKSNRSLRRAI-LSFETC  235 (365)
Q Consensus       213 ~~~~i~~~~~g~lr~ai-~~l~~~  235 (365)
                      .++.+++.+.|..+..+ ++++.+
T Consensus       213 ~~~~la~~~~g~~~~~l~~l~~~a  236 (297)
T 3b9p_A          213 ALRRLAKITDGYSGSDLTALAKDA  236 (297)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHH
Confidence            99999999999887666 444444

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.86  E-value=7.5e-21  Score=173.09  Aligned_cols=187  Identities=21%  Similarity=0.279  Sum_probs=138.9

Q ss_pred             ccccCHHHHHHHHHHHH---------------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCC----ccceeccccce
Q 017844           14 QVIVHQDIAQNLKKLVT---------------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGA----EKVKVENKTWK   74 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~---------------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~----~~i~~~~~~~~   74 (365)
                      +++|++.+++.+...+.               .....+++|+||||||||++|+++++.+.+...    ..+.+++..  
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--  109 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD--  109 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG--
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH--
Confidence            68999999998887664               223335999999999999999999998754221    011111100  


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---------CHH
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------SRE  145 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L---------~~~  145 (365)
                                            +...-.+ .......+.+...            ...|++|||+|.+         +..
T Consensus       110 ----------------------l~~~~~g-~~~~~~~~~~~~~------------~~~vl~iDEid~l~~~~~~~~~~~~  154 (309)
T 3syl_A          110 ----------------------LVGQYIG-HTAPKTKEVLKRA------------MGGVLFIDEAYYLYRPDNERDYGQE  154 (309)
T ss_dssp             ----------------------TCCSSTT-CHHHHHHHHHHHH------------TTSEEEEETGGGSCCCC---CCTHH
T ss_pred             ----------------------hhhhccc-ccHHHHHHHHHhc------------CCCEEEEEChhhhccCCCcccccHH
Confidence                                  0000011 1111222333221            1269999999977         788


Q ss_pred             HHHHHHHHHhhhcCceeEEEEecCCC-----cccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 017844          146 AQHSLRRTMEKYSASCRLILCCNSSS-----KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAE  219 (365)
Q Consensus       146 ~~~~Ll~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~  219 (365)
                      .++.|++.+++.+.++.+|++++...     .+.+++++|| ..+.|++|+.+++..+++.++.+.+..+++++++.+++
T Consensus       155 ~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~  234 (309)
T 3syl_A          155 AIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA  234 (309)
T ss_dssp             HHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            89999999999888888888887543     2468999999 79999999999999999999999999999999999998


Q ss_pred             H--------cCCCHHHHHHHHHHHHh
Q 017844          220 K--------SNRSLRRAILSFETCRV  237 (365)
Q Consensus       220 ~--------~~g~lr~ai~~l~~~~~  237 (365)
                      .        +.||+|.+.++++.++.
T Consensus       235 ~~~~~~~~~~~gn~r~l~~~l~~a~~  260 (309)
T 3syl_A          235 YIGLRRNQPHFANARSIRNALDRARL  260 (309)
T ss_dssp             HHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCCCcHHHHHHHHHHHHH
Confidence            6        45999999999998765

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.86  E-value=2e-20  Score=171.22  Aligned_cols=197  Identities=18%  Similarity=0.201  Sum_probs=143.3

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHH----------c-CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~----------~-~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~   69 (365)
                      .|+.++.+.+|++++|++.+++.++.++.          . +..+ +++|+||||||||++|+++++++..+   .+.++
T Consensus         7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~v~   83 (322)
T 3eie_A            7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS   83 (322)
T ss_dssp             CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred             ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC---EEEEc
Confidence            37889999999999999999999998872          1 2222 39999999999999999999976321   11122


Q ss_pred             cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----
Q 017844           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (365)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----  144 (365)
                      +..+                        .....+ .....++..+.....         ..+.||+|||+|.+..     
T Consensus        84 ~~~l------------------------~~~~~g-~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~~~~~  129 (322)
T 3eie_A           84 SSDL------------------------VSKWMG-ESEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEG  129 (322)
T ss_dssp             HHHH------------------------HTTTGG-GHHHHHHHHHHHHHH---------TSSEEEEEECGGGGSCC----
T ss_pred             hHHH------------------------hhcccc-hHHHHHHHHHHHHHh---------cCCeEEEechhhhhhccCCCC
Confidence            1111                        000001 111224444444332         2347999999998753     


Q ss_pred             ------HHHHHHHHHHhhh---cCceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 017844          145 ------EAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (365)
Q Consensus       145 ------~~~~~Ll~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~  214 (365)
                            ..++.|+..++..   ..++.+|.+||.+..+++++++|| ..+.++.|+.++..++++.++.+.+..+++..+
T Consensus       130 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l  209 (322)
T 3eie_A          130 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDY  209 (322)
T ss_dssp             --CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHH
T ss_pred             cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHH
Confidence                  3467788888753   346778888999999999999999 489999999999999999999888888899999


Q ss_pred             HHHHHHcCC-CHHHHHHHHHHH
Q 017844          215 TRLAEKSNR-SLRRAILSFETC  235 (365)
Q Consensus       215 ~~i~~~~~g-~lr~ai~~l~~~  235 (365)
                      +.+++.+.| +.++..++++.+
T Consensus       210 ~~la~~t~g~sg~di~~l~~~a  231 (322)
T 3eie_A          210 RTLGAMTEGYSGSDIAVVVKDA  231 (322)
T ss_dssp             HHHHHTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHH
Confidence            999999887 555555555443

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.85  E-value=3.9e-20  Score=171.39  Aligned_cols=198  Identities=18%  Similarity=0.199  Sum_probs=137.6

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~   69 (365)
                      .|..++++.+|++++|++.+++.|+.++..           ...+ +++|+||||||||++|+++++++..+   .+.++
T Consensus        40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~v~  116 (355)
T 2qp9_X           40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVS  116 (355)
T ss_dssp             -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE---EEEEE
T ss_pred             hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC---EEEee
Confidence            366788999999999999999999987731           2223 39999999999999999999987321   11122


Q ss_pred             cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----
Q 017844           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (365)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----  144 (365)
                      +..+                     ..   .-.+ .....++..+.....         ..+.||||||+|.+..     
T Consensus       117 ~~~l---------------------~~---~~~g-~~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~r~~~  162 (355)
T 2qp9_X          117 SSDL---------------------VS---KWMG-ESEKLVKQLFAMARE---------NKPSIIFIDQVDALTGTRGEG  162 (355)
T ss_dssp             HHHH---------------------HS---CC----CHHHHHHHHHHHHH---------TSSEEEEEECGGGGTC-----
T ss_pred             HHHH---------------------hh---hhcc-hHHHHHHHHHHHHHH---------cCCeEEEEechHhhcccCCCC
Confidence            1111                     00   0001 111234444443322         2347999999998863     


Q ss_pred             ------HHHHHHHHHHhhh---cCceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 017844          145 ------EAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (365)
Q Consensus       145 ------~~~~~Ll~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~  214 (365)
                            ..++.|+..|+..   ..++.+|.+||.++.+++++++|| ..+.++.|+.+++.++++.++...+..+++..+
T Consensus       163 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l  242 (355)
T 2qp9_X          163 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDY  242 (355)
T ss_dssp             -CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHH
Confidence                  3467788888743   456788889999999999999999 589999999999999999999888777899999


Q ss_pred             HHHHHHcCC-CHHHHHHHHHHHH
Q 017844          215 TRLAEKSNR-SLRRAILSFETCR  236 (365)
Q Consensus       215 ~~i~~~~~g-~lr~ai~~l~~~~  236 (365)
                      +.|++.+.| +.++..++++.++
T Consensus       243 ~~la~~t~G~sg~dl~~l~~~A~  265 (355)
T 2qp9_X          243 RTLGAMTEGYSGSDIAVVVKDAL  265 (355)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999998 5555555555443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.85  E-value=6e-20  Score=172.31  Aligned_cols=218  Identities=16%  Similarity=0.190  Sum_probs=150.7

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc----CCCC--eEEEECCCCCcHHHHHHHHHHHhcCC-CCccceeccccce
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCP--HLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWK   74 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~~~~--~lll~Gp~G~GKTtla~~la~~l~~~-~~~~i~~~~~~~~   74 (365)
                      +|..+|+|   ++++|++..++.+..++..    +...  +++|+||+|+||||+++.+++.+.+. ....+++++... 
T Consensus         9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~-   84 (389)
T 1fnn_A            9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY-   84 (389)
T ss_dssp             GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC-
T ss_pred             hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC-
Confidence            47788888   7799999988888887764    3323  69999999999999999999987554 233344443221 


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l  154 (365)
                          .....+. ..+.  ..+.......+. ....+.+.+......       .+++.|++|||++.++...++.|++.+
T Consensus        85 ----~~~~~~~-~~l~--~~l~~~~~~~~~-~~~~~~~~l~~~l~~-------~~~~~vlilDE~~~l~~~~~~~L~~~~  149 (389)
T 1fnn_A           85 ----RNFTAII-GEIA--RSLNIPFPRRGL-SRDEFLALLVEHLRE-------RDLYMFLVLDDAFNLAPDILSTFIRLG  149 (389)
T ss_dssp             ----CSHHHHH-HHHH--HHTTCCCCSSCC-CHHHHHHHHHHHHHH-------TTCCEEEEEETGGGSCHHHHHHHHHHT
T ss_pred             ----CCHHHHH-HHHH--HHhCccCCCCCC-CHHHHHHHHHHHHhh-------cCCeEEEEEECccccchHHHHHHHHHH
Confidence                0000000 0000  000000000111 111122222222211       234689999999999999999999999


Q ss_pred             hhhc----CceeEEEEecCC---CcccHHHhccce--eEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc--
Q 017844          155 EKYS----ASCRLILCCNSS---SKVTEAIRSRCL--NIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKS--  221 (365)
Q Consensus       155 e~~~----~~~~~Il~t~~~---~~l~~~l~sR~~--~i~~~~~~~~~~~~iL~~~~~~~--~~~i~~~~~~~i~~~~--  221 (365)
                      ++.+    .++.+|++++..   ..+.+.+.+||.  .+.|++++.+++.+++...+...  ...+++++++.+++.+  
T Consensus       150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  229 (389)
T 1fnn_A          150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA  229 (389)
T ss_dssp             TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred             HhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence            8764    478899999887   567889999986  79999999999999999988752  3478999999999999  


Q ss_pred             -------CCCHHHHHHHHHHHHhc
Q 017844          222 -------NRSLRRAILSFETCRVQ  238 (365)
Q Consensus       222 -------~g~lr~ai~~l~~~~~~  238 (365)
                             +||+|.++++++.++..
T Consensus       230 ~~~~~~~~G~~r~~~~~l~~a~~~  253 (389)
T 1fnn_A          230 QTPLDTNRGDARLAIDILYRSAYA  253 (389)
T ss_dssp             SSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCcHHHHHHHHHHHHHH
Confidence                   89999999999987654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.84  E-value=3.2e-19  Score=163.02  Aligned_cols=197  Identities=17%  Similarity=0.194  Sum_probs=140.3

Q ss_pred             ccccCCCCCCccccCHHHHHHHHHHHHc-----------CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus         4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      +.++.+.+|++++|++.+++.|+..+..           ... .+++|+||||||||++|+++++++.+.  ..+.+++.
T Consensus         3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~~   80 (322)
T 1xwi_A            3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISSS   80 (322)
T ss_dssp             EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEECC
T ss_pred             eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEhH
Confidence            4566778999999999999999987731           122 239999999999999999999976211  11112211


Q ss_pred             cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------
Q 017844           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (365)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--------  143 (365)
                      .+                     ..   ...+ .....++..+.....         ..+.||+|||+|.+.        
T Consensus        81 ~l---------------------~~---~~~g-~~~~~~~~lf~~a~~---------~~~~vl~iDEid~l~~~~~~~~~  126 (322)
T 1xwi_A           81 DL---------------------VS---KWLG-ESEKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENES  126 (322)
T ss_dssp             SS---------------------CC---SSCC-SCHHHHHHHHHHHHH---------TSSEEEEEETTTGGGCCSSSCCT
T ss_pred             HH---------------------Hh---hhhh-HHHHHHHHHHHHHHh---------cCCcEEEeecHHHhccccccccc
Confidence            11                     00   0011 122234455544432         234799999999872        


Q ss_pred             ---HHHHHHHHHHHhhh---cCceeEEEEecCCCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017844          144 ---REAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (365)
Q Consensus       144 ---~~~~~~Ll~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~  216 (365)
                         ....+.|+..++..   ..++.+|.+||.+..+++++++|| ..+.++.|+.++..++++.++...+..+++..++.
T Consensus       127 ~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~  206 (322)
T 1xwi_A          127 EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRE  206 (322)
T ss_dssp             THHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence               23456777777753   456788889999999999999999 58999999999999999999988887889999999


Q ss_pred             HHHHcCCC-HHHHHHHHHHHH
Q 017844          217 LAEKSNRS-LRRAILSFETCR  236 (365)
Q Consensus       217 i~~~~~g~-lr~ai~~l~~~~  236 (365)
                      |++.+.|- .++..++++.++
T Consensus       207 la~~t~G~sgadl~~l~~~A~  227 (322)
T 1xwi_A          207 LGRKTDGYSGADISIIVRDAL  227 (322)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHH
Confidence            99999884 444545555433

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.84  E-value=7.7e-20  Score=169.64  Aligned_cols=197  Identities=16%  Similarity=0.202  Sum_probs=140.9

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      +.++++|.+|++++|++.+++.++.++..            ....+++|+||+|||||++|+++++.+.++   .+.+++
T Consensus        74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~i~~  150 (357)
T 3d8b_A           74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT---FFSISA  150 (357)
T ss_dssp             TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE---EEEEEG
T ss_pred             cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe---EEEEeh
Confidence            56889999999999999999999988752            223349999999999999999999975221   122222


Q ss_pred             ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-------
Q 017844           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (365)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-------  143 (365)
                      ..+                     ..   ...+ .....++..+.....         ..+.||+|||+|.|.       
T Consensus       151 ~~l---------------------~~---~~~g-~~~~~~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~  196 (357)
T 3d8b_A          151 SSL---------------------TS---KWVG-EGEKMVRALFAVARC---------QQPAVIFIDEIDSLLSQRGDGE  196 (357)
T ss_dssp             GGG---------------------CC---SSTT-HHHHHHHHHHHHHHH---------TCSEEEEEETHHHHTBC-----
T ss_pred             HHh---------------------hc---cccc-hHHHHHHHHHHHHHh---------cCCeEEEEeCchhhhccCCCCc
Confidence            111                     00   0001 111123333333222         235799999998763       


Q ss_pred             ----HHHHHHHHHHHhhh----cCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 017844          144 ----REAQHSLRRTMEKY----SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (365)
Q Consensus       144 ----~~~~~~Ll~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~  214 (365)
                          ...++.|+..++..    ..++.+|++||.+..+.+++++||. .+.++.|+.++..+++..++...+..++++.+
T Consensus       197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l  276 (357)
T 3d8b_A          197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI  276 (357)
T ss_dssp             -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHH
T ss_pred             chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHH
Confidence                23456777777642    3467788889998899999999996 88999999999999999999888888999999


Q ss_pred             HHHHHHcCC-CHHHHHHHHHHHH
Q 017844          215 TRLAEKSNR-SLRRAILSFETCR  236 (365)
Q Consensus       215 ~~i~~~~~g-~lr~ai~~l~~~~  236 (365)
                      +.+++.+.| +.+....+++.++
T Consensus       277 ~~la~~t~G~s~~dl~~l~~~a~  299 (357)
T 3d8b_A          277 EQIVQQSDAFSGADMTQLCREAS  299 (357)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999998 4444445555443

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.83  E-value=1.6e-19  Score=172.02  Aligned_cols=198  Identities=17%  Similarity=0.190  Sum_probs=141.5

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHH----------c-CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVT----------E-QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~----------~-~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      +..++++.+|++++|++.+++.|+.++.          . ... .+++|+||||||||++|+++++++.+  ...+.+++
T Consensus       124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--~~~~~v~~  201 (444)
T 2zan_A          124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--STFFSISS  201 (444)
T ss_dssp             CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS--SEEEEECC
T ss_pred             eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeH
Confidence            5677889999999999999999998772          1 122 34999999999999999999997521  11122222


Q ss_pred             ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-------
Q 017844           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (365)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-------  143 (365)
                      ..+                     ....   .+. ....++..+.....         ..+.||+|||+|.+.       
T Consensus       202 ~~l---------------------~~~~---~g~-~~~~~~~~f~~a~~---------~~~~vl~iDEid~l~~~~~~~~  247 (444)
T 2zan_A          202 SDL---------------------VSKW---LGE-SEKLVKNLFQLARE---------NKPSIIFIDEIDSLCGSRSENE  247 (444)
T ss_dssp             C----------------------------------CCCTHHHHHHHHHH---------SCSEEEEESCTTTTCCCSSCCC
T ss_pred             HHH---------------------Hhhh---cch-HHHHHHHHHHHHHH---------cCCeEEEEechHhhccCCCCcc
Confidence            111                     0000   000 11124455544332         234799999999883       


Q ss_pred             ----HHHHHHHHHHHhhh---cCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017844          144 ----REAQHSLRRTMEKY---SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (365)
Q Consensus       144 ----~~~~~~Ll~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~  215 (365)
                          ...++.|+..++..   ..++.||++||.+..+++++++||. .+.++.|+.++...+++.++...+..+++..+.
T Consensus       248 ~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~  327 (444)
T 2zan_A          248 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQ  327 (444)
T ss_dssp             CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence                34566777777653   4568889999999999999999994 899999999999999999988877778999999


Q ss_pred             HHHHHcCC-CHHHHHHHHHHHH
Q 017844          216 RLAEKSNR-SLRRAILSFETCR  236 (365)
Q Consensus       216 ~i~~~~~g-~lr~ai~~l~~~~  236 (365)
                      .|++.+.| +.++..++++.++
T Consensus       328 ~la~~t~G~sgadl~~l~~~a~  349 (444)
T 2zan_A          328 ELGRKTDGYSGADISIIVRDAL  349 (444)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHH
Confidence            99999998 5555555555443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.83  E-value=1.2e-19  Score=160.67  Aligned_cols=200  Identities=18%  Similarity=0.258  Sum_probs=139.0

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~   69 (365)
                      +|.+++++.+|++++|++.+++.+...+..           ...+ +++|+||||+||||+++++++.+..+   .+.++
T Consensus         1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~   77 (257)
T 1lv7_A            1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTIS   77 (257)
T ss_dssp             CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEEC
T ss_pred             CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEe
Confidence            699999999999999999999887766532           1233 49999999999999999999976322   12222


Q ss_pred             cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----
Q 017844           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (365)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----  144 (365)
                      +..+                     ...   ..+ .....++..+.....         ..+.++++||+|.+..     
T Consensus        78 ~~~~---------------------~~~---~~~-~~~~~~~~~~~~a~~---------~~~~il~iDeid~l~~~~~~~  123 (257)
T 1lv7_A           78 GSDF---------------------VEM---FVG-VGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAG  123 (257)
T ss_dssp             SCSS---------------------TTS---CCC-CCHHHHHHHHHHHHT---------TCSEEEEETTHHHHTCCCSTT
T ss_pred             HHHH---------------------HHH---hhh-hhHHHHHHHHHHHHH---------cCCeeehhhhhhhhccCCCCC
Confidence            2211                     000   001 111234444444321         2347999999976532     


Q ss_pred             ---------HHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCC
Q 017844          145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (365)
Q Consensus       145 ---------~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~  210 (365)
                               ...+.++..++..  ..++.+|.+||.++.+++++.+  |+ ..+.|+.|+.++..++++..+.+.++. +
T Consensus       124 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~  202 (257)
T 1lv7_A          124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-P  202 (257)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-T
T ss_pred             cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-c
Confidence                     3455677777643  3457788889999889999987  76 478999999999999998887654432 2


Q ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Q 017844          211 SGFATRLAEKSNR-SLRRAILSFETCRVQQ  239 (365)
Q Consensus       211 ~~~~~~i~~~~~g-~lr~ai~~l~~~~~~~  239 (365)
                      +..+..++..+.| +.|+..++++.++..+
T Consensus       203 ~~~~~~la~~~~G~~~~dl~~l~~~a~~~a  232 (257)
T 1lv7_A          203 DIDAAIIARGTPGFSGADLANLVNEAALFA  232 (257)
T ss_dssp             TCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            3336788999999 9999999988776553

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.83  E-value=4.4e-20  Score=172.99  Aligned_cols=217  Identities=20%  Similarity=0.260  Sum_probs=144.6

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCC------CCccceecccc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP------GAEKVKVENKT   72 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~------~~~~i~~~~~~   72 (365)
                      |..+|.|   ++++|++...+.+..++..    +..++++|+||+|+|||++++.+++.+...      ....+++++..
T Consensus        12 l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   88 (387)
T 2v1u_A           12 LLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH   88 (387)
T ss_dssp             HSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             cCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence            4556777   7889999999999988854    334459999999999999999999976432      22223333321


Q ss_pred             ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH--HHHHH
Q 017844           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--AQHSL  150 (365)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~--~~~~L  150 (365)
                      .     .....+. ..+  ...+.......+. .   ..+.+..+.....    ..+++.+++|||++.+...  .++.|
T Consensus        89 ~-----~~~~~~~-~~l--~~~l~~~~~~~~~-~---~~~~~~~l~~~l~----~~~~~~vlilDEi~~l~~~~~~~~~l  152 (387)
T 2v1u_A           89 R-----ETPYRVA-SAI--AEAVGVRVPFTGL-S---VGEVYERLVKRLS----RLRGIYIIVLDEIDFLPKRPGGQDLL  152 (387)
T ss_dssp             S-----CSHHHHH-HHH--HHHHSCCCCSSCC-C---HHHHHHHHHHHHT----TSCSEEEEEEETTTHHHHSTTHHHHH
T ss_pred             C-----CCHHHHH-HHH--HHHhCCCCCCCCC-C---HHHHHHHHHHHHh----ccCCeEEEEEccHhhhcccCCCChHH
Confidence            1     0000000 000  0000000000111 1   1122222211111    1234679999999998766  67777


Q ss_pred             HHHHhhh-----cCceeEEEEecCC---CcccHHHhccc--eeEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHH
Q 017844          151 RRTMEKY-----SASCRLILCCNSS---SKVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLA  218 (365)
Q Consensus       151 l~~le~~-----~~~~~~Il~t~~~---~~l~~~l~sR~--~~i~~~~~~~~~~~~iL~~~~~~--~~~~i~~~~~~~i~  218 (365)
                      ..+++..     ..++.+|++++..   ..+.+++.+|+  ..+.|++++.+++.+++...+..  .+..+++++++.++
T Consensus       153 ~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~  232 (387)
T 2v1u_A          153 YRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCA  232 (387)
T ss_dssp             HHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHH
T ss_pred             HhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence            7777654     4567889999887   57889999999  68999999999999999999876  56778999999999


Q ss_pred             HHcC---CCHHHHHHHHHHHHhc
Q 017844          219 EKSN---RSLRRAILSFETCRVQ  238 (365)
Q Consensus       219 ~~~~---g~lr~ai~~l~~~~~~  238 (365)
                      +.+.   ||+|.++++++.+...
T Consensus       233 ~~~~~~~G~~r~~~~~l~~a~~~  255 (387)
T 2v1u_A          233 ALAAREHGDARRALDLLRVAGEI  255 (387)
T ss_dssp             HHHHSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHH
Confidence            9998   9999999999987654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.82  E-value=1.9e-19  Score=168.74  Aligned_cols=219  Identities=15%  Similarity=0.105  Sum_probs=142.3

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCC--------CCccceec
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP--------GAEKVKVE   69 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~--------~~~~i~~~   69 (365)
                      +|..+|+|   ++++|++..++.+..++..    +..++++|+||+|+|||++++.+++.+...        ....++++
T Consensus        12 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           12 FIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             TTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            57788888   7899999988888766653    334459999999999999999999976332        22223333


Q ss_pred             cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH-HH
Q 017844           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA-QH  148 (365)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~-~~  148 (365)
                      +.....++..-...+    .  ...........+...    .+.+..+.....     ..+ .+++|||+|.+.... ++
T Consensus        89 ~~~~~~~~~~~~~~l----~--~~l~~~~~~~~~~~~----~~~~~~l~~~l~-----~~~-~vlilDEi~~l~~~~~~~  152 (384)
T 2qby_B           89 CREVGGTPQAVLSSL----A--GKLTGFSVPKHGINL----GEYIDKIKNGTR-----NIR-AIIYLDEVDTLVKRRGGD  152 (384)
T ss_dssp             HHHHCSCHHHHHHHH----H--HHHHCSCCCSSSSCT----HHHHHHHHHHHS-----SSC-EEEEEETTHHHHHSTTSH
T ss_pred             CccCCCCHHHHHHHH----H--HHhcCCCCCCCCCCH----HHHHHHHHHHhc-----cCC-CEEEEECHHHhccCCCCc
Confidence            321100000000000    0  000000000111111    122222221111     112 399999999886542 45


Q ss_pred             H-HHHHHhhhcCceeEEEEecCC---CcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHc
Q 017844          149 S-LRRTMEKYSASCRLILCCNSS---SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK--EGLQLPSGFATRLAEKS  221 (365)
Q Consensus       149 ~-Ll~~le~~~~~~~~Il~t~~~---~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~--~~~~i~~~~~~~i~~~~  221 (365)
                      . +..+++.. .++.+|++++..   ..+.+++.+|+ ..+.|++++.+++.+++..++..  .+..+++++++.+++.+
T Consensus       153 ~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~  231 (384)
T 2qby_B          153 IVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS  231 (384)
T ss_dssp             HHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred             eeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence            5 44555544 678899999987   57889999995 69999999999999999998875  45678999999999998


Q ss_pred             C---CCHHHHHHHHHHHHhcCC
Q 017844          222 N---RSLRRAILSFETCRVQQY  240 (365)
Q Consensus       222 ~---g~lr~ai~~l~~~~~~~~  240 (365)
                      .   ||+|.++++++.+...+.
T Consensus       232 ~~~~G~~r~a~~~l~~a~~~a~  253 (384)
T 2qby_B          232 AKEHGDARKAVNLLFRAAQLAS  253 (384)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HhccCCHHHHHHHHHHHHHHhc
Confidence            8   999999999998876654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1e-18  Score=161.31  Aligned_cols=194  Identities=20%  Similarity=0.251  Sum_probs=131.7

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHHc-----------CC-CCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QD-CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~-~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      ++-...+|+++.|.+++++.|++.+.-           |- .|. +|||||||||||++|+++|+++..+-   +.+++.
T Consensus       140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~~s  216 (405)
T 4b4t_J          140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVSGA  216 (405)
T ss_dssp             ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEEGG
T ss_pred             cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEEhH
Confidence            334446899999999999999987641           32 233 99999999999999999999873321   111111


Q ss_pred             cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------
Q 017844           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------  144 (365)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------  144 (365)
                      .+                     +    +.........+++++......         .+.|++|||+|.+..       
T Consensus       217 ~l---------------------~----sk~vGese~~vr~lF~~Ar~~---------aP~IIFiDEiDai~~~R~~~~~  262 (405)
T 4b4t_J          217 EL---------------------V----QKYIGEGSRMVRELFVMAREH---------APSIIFMDEIDSIGSTRVEGSG  262 (405)
T ss_dssp             GG---------------------S----CSSTTHHHHHHHHHHHHHHHT---------CSEEEEEESSSCCTTSCSCSSS
T ss_pred             Hh---------------------h----ccccchHHHHHHHHHHHHHHh---------CCceEeeecchhhccCCCCCCC
Confidence            11                     1    011111223466666655443         347999999998732       


Q ss_pred             ----H---HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844          145 ----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       145 ----~---~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~  212 (365)
                          .   ..+.|+..|+..  ..++.+|.+||+++.+++++++  |+. .|+|+.|+.+++.++++.++.+.++. ++.
T Consensus       263 ~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dv  341 (405)
T 4b4t_J          263 GGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGI  341 (405)
T ss_dssp             GGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSC
T ss_pred             CCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccC
Confidence                1   344566666643  3467889999999999999998  774 89999999999999999887655432 222


Q ss_pred             HHHHHHHHcCC-CHHHHHHHHHHHH
Q 017844          213 FATRLAEKSNR-SLRRAILSFETCR  236 (365)
Q Consensus       213 ~~~~i~~~~~g-~lr~ai~~l~~~~  236 (365)
                      .++.+|+.+.| +..+.-+++..++
T Consensus       342 dl~~lA~~t~G~SGADi~~l~~eA~  366 (405)
T 4b4t_J          342 NLRKVAEKMNGCSGADVKGVCTEAG  366 (405)
T ss_dssp             CHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            47888988876 4444444454443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.82  E-value=5.1e-20  Score=176.67  Aligned_cols=200  Identities=15%  Similarity=0.243  Sum_probs=141.1

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .|.++|||..|++++|++..++.+...+.....+|++|+||||||||++++++++.+.+...... +.+           
T Consensus       169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~-l~~-----------  236 (468)
T 3pxg_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI-LRD-----------  236 (468)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT-TSS-----------
T ss_pred             HHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh-hcC-----------
Confidence            48899999999999999999999999998877778999999999999999999998754321100 000           


Q ss_pred             eeccccccccccceecCCC-CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           82 IDLELTTLSSANHVELSPS-DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                                ..++.+... .........++.++..+..         .++.|++||    ...++++.|+..|+.  ..
T Consensus       237 ----------~~~~~l~~~~~~~g~~e~~~~~~~~~~~~---------~~~~iLfiD----~~~~a~~~L~~~L~~--g~  291 (468)
T 3pxg_A          237 ----------KRVMTLDMGTKYRGEFEDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLAR--GE  291 (468)
T ss_dssp             ----------CCEECC----------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTTS--SS
T ss_pred             ----------CeEEEeeCCccccchHHHHHHHHHHHHHh---------cCCeEEEEe----CchhHHHHHHHhhcC--CC
Confidence                      011111111 0000001124455555443         234699999    455677778888774  36


Q ss_pred             eeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------H
Q 017844          161 CRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNRS------L  225 (365)
Q Consensus       161 ~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~~~~g~------l  225 (365)
                      +.+|.+||..+     .+++++++||..+.|++|+.+++..+++.++.+    +++.++++++..++..+.+.      +
T Consensus       292 v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp  371 (468)
T 3pxg_A          292 LQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP  371 (468)
T ss_dssp             CEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred             EEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCC
Confidence            78888888876     588999999999999999999999999988766    78899999999999976543      5


Q ss_pred             HHHHHHHHHHHhc
Q 017844          226 RRAILSFETCRVQ  238 (365)
Q Consensus       226 r~ai~~l~~~~~~  238 (365)
                      +.++.+++.++..
T Consensus       372 ~~ai~ll~~a~~~  384 (468)
T 3pxg_A          372 DKAIDLIDEAGSK  384 (468)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            6799999876653

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.82  E-value=5e-19  Score=159.71  Aligned_cols=206  Identities=8%  Similarity=0.066  Sum_probs=131.6

Q ss_pred             cccCHHHHH----HHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC-------CCccceeccccceecCCCccee
Q 017844           15 VIVHQDIAQ----NLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP-------GAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        15 iig~~~~~~----~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-------~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      +.|.++..+    .|...+..+..++++|+||||||||++++.+++++...       ....++++|... .++..-...
T Consensus        22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~-~t~~~~~~~  100 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL-AGMDALYEK  100 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC-C--HHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc-CCHHHHHHH
Confidence            345544444    44455566777779999999999999999999988532       123345555432 111000000


Q ss_pred             ccccccccccceecCCCCc-CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---cC
Q 017844           84 LELTTLSSANHVELSPSDA-GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---SA  159 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---~~  159 (365)
                      +    +.     .+..... .......++..+...   ..    ....+.|+++||+|.+.  .++.|+.+++.+   ..
T Consensus       101 I----~~-----~L~g~~~~~~~~~~~L~~~f~~~---~~----~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s  162 (318)
T 3te6_A          101 I----WF-----AISKENLCGDISLEALNFYITNV---PK----AKKRKTLILIQNPENLL--SEKILQYFEKWISSKNS  162 (318)
T ss_dssp             H----HH-----HHSCCC--CCCCHHHHHHHHHHS---CG----GGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSC
T ss_pred             H----HH-----HhcCCCCCchHHHHHHHHHHHHh---hh----ccCCceEEEEecHHHhh--cchHHHHHHhcccccCC
Confidence            0    00     0000000 001111223333221   00    12356799999999998  567777777643   33


Q ss_pred             ceeEEEEecCCCc----ccHHHhccc--eeEEecCCCHHHHHHHHHHHHHHcC---------------------------
Q 017844          160 SCRLILCCNSSSK----VTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKEG---------------------------  206 (365)
Q Consensus       160 ~~~~Il~t~~~~~----l~~~l~sR~--~~i~~~~~~~~~~~~iL~~~~~~~~---------------------------  206 (365)
                      ++.+|+++|+.+.    +.++++||+  ..+.|++++.+++.+++++++....                           
T Consensus       163 ~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  242 (318)
T 3te6_A          163 KLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKI  242 (318)
T ss_dssp             CEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------
T ss_pred             cEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            5778888888753    456778998  5799999999999999999987631                           


Q ss_pred             --------CCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHhcC
Q 017844          207 --------LQLPSGFATRLAE---KSNRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       207 --------~~i~~~~~~~i~~---~~~g~lr~ai~~l~~~~~~~  239 (365)
                              +.+++++++.+|+   ...||+|+|+++|+.+...+
T Consensus       243 ~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~a  286 (318)
T 3te6_A          243 PDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEIS  286 (318)
T ss_dssp             CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence                    1478999999999   57899999999999876544

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.82  E-value=7.4e-18  Score=149.47  Aligned_cols=216  Identities=19%  Similarity=0.242  Sum_probs=136.0

Q ss_pred             CCCCCccccCHHHHHHHHHHHHc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVTE------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      +.+|++++|++.+++.++..+..            ....+++|+||||+|||++|+++++++..+   .+.+++..+   
T Consensus         2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~~~~~---   75 (262)
T 2qz4_A            2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMAGAEF---   75 (262)
T ss_dssp             CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEETTTT---
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEechHHH---
Confidence            46899999999999888876632            122349999999999999999999976322   112222111   


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC------------H
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------------R  144 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------------~  144 (365)
                                        ..    .........++..+.....         ..+.|++|||+|.+.            .
T Consensus        76 ------------------~~----~~~~~~~~~~~~~~~~a~~---------~~~~vl~iDeid~l~~~~~~~~~~~~~~  124 (262)
T 2qz4_A           76 ------------------VE----VIGGLGAARVRSLFKEARA---------RAPCIVYIDEIDAVGKKRSTTMSGFSNT  124 (262)
T ss_dssp             ------------------SS----SSTTHHHHHHHHHHHHHHH---------TCSEEEEEECC-----------------
T ss_pred             ------------------Hh----hccChhHHHHHHHHHHHHh---------cCCeEEEEeCcchhhccccccccCccch
Confidence                              00    0011111123344443322         234799999999883            2


Q ss_pred             HHHHHHHHH---Hhh--hcCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HH
Q 017844          145 EAQHSLRRT---MEK--YSASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-AT  215 (365)
Q Consensus       145 ~~~~~Ll~~---le~--~~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~-~~  215 (365)
                      ..+..+..+   ++.  ...++.+|.++|.+..+++++++  |+ ..+.|+.|+.++..++++..+.+.+...+++. ..
T Consensus       125 ~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~  204 (262)
T 2qz4_A          125 EEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQ  204 (262)
T ss_dssp             --CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHH
T ss_pred             hHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHH
Confidence            233334444   443  23467788888888889999998  88 58999999999999999999998888777664 57


Q ss_pred             HHHHHcCCC-HHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHH
Q 017844          216 RLAEKSNRS-LRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIAS  262 (365)
Q Consensus       216 ~i~~~~~g~-lr~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  262 (365)
                      .++..+.|. .+...++++.++..+.. .....+...++...+.++..
T Consensus       205 ~l~~~~~g~~~~~l~~l~~~a~~~a~~-~~~~~i~~~d~~~a~~~~~~  251 (262)
T 2qz4_A          205 RLAELTPGFSGADIANICNEAALHAAR-EGHTSVHTLNFEYAVERVLA  251 (262)
T ss_dssp             HHHHTCTTCCHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHhcc
Confidence            888888774 55666777776655432 12234556666665555443

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.81  E-value=1.8e-19  Score=163.82  Aligned_cols=194  Identities=16%  Similarity=0.279  Sum_probs=131.1

Q ss_pred             CccccCHHHHHHHHHHHHc--------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC
Q 017844           13 DQVIVHQDIAQNLKKLVTE--------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG   78 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~--------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~   78 (365)
                      ++++|++.+++.+...+..              ....+++|+||||||||++++++++.+.++   .+.+++..+     
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~---~~~i~~~~~-----   86 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKF-----   86 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGG-----
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEcchhc-----
Confidence            3589999999988887754              223449999999999999999999977321   222332221     


Q ss_pred             CcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHH------------
Q 017844           79 SRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREA------------  146 (365)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~------------  146 (365)
                                 ...   .+.    +......+++.+.    ..+-.......+.|++|||++.+....            
T Consensus        87 -----------~~~---~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~  144 (310)
T 1ofh_A           87 -----------TEV---GYV----GKEVDSIIRDLTD----SAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGV  144 (310)
T ss_dssp             -----------SSC---CSG----GGSTTHHHHHHHH----TTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHH
T ss_pred             -----------ccC---Ccc----CccHHHHHHHHHH----HhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHH
Confidence                       000   000    1011111222222    110000001135799999999987544            


Q ss_pred             HHHHHHHHhhh----------cCceeEEEEe----cCCCcccHHHhccce-eEEecCCCHHHHHHHHHH-----------
Q 017844          147 QHSLRRTMEKY----------SASCRLILCC----NSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEF-----------  200 (365)
Q Consensus       147 ~~~Ll~~le~~----------~~~~~~Il~t----~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~-----------  200 (365)
                      ++.|++.+++.          ..++.+|+++    +.+..+.+++.+||. .+.|++|+.+++.+++++           
T Consensus       145 ~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  224 (310)
T 1ofh_A          145 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA  224 (310)
T ss_dssp             HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH
T ss_pred             HHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHH
Confidence            88899999863          2356677764    345578999999995 699999999999999983           


Q ss_pred             HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Q 017844          201 IAKKEGL--QLPSGFATRLAEKS--------NRSLRRAILSFETCR  236 (365)
Q Consensus       201 ~~~~~~~--~i~~~~~~~i~~~~--------~g~lr~ai~~l~~~~  236 (365)
                      .+...+.  .+++++++.|++.+        .||+|.+.+.++.+.
T Consensus       225 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~  270 (310)
T 1ofh_A          225 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM  270 (310)
T ss_dssp             HHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred             HHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence            2333453  68999999999987        799999999999865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.81  E-value=2.8e-19  Score=162.79  Aligned_cols=201  Identities=15%  Similarity=0.262  Sum_probs=139.3

Q ss_pred             CccccCHHHHHHHHHHHHcC--------CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           13 DQVIVHQDIAQNLKKLVTEQ--------DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~--------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      ++++|++.+++.+...+..+        +.. +++|+||||||||++|+++++.+.+.....+.+++..+ .    ..  
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~-~----~~--   89 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY-M----EK--   89 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC-C----ST--
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc-c----cc--
Confidence            46789999999988888653        222 49999999999999999999987665443444444322 0    00  


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----  158 (365)
                           ......+...+...+......+   ...+..         ....+++|||++.+++..++.|++.|++..     
T Consensus        90 -----~~~~~l~g~~~~~~~~~~~~~~---~~~~~~---------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~  152 (311)
T 4fcw_A           90 -----HAVSRLIGAPPGYVGYEEGGQL---TEAVRR---------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSH  152 (311)
T ss_dssp             -----THHHHHHCCCTTSTTTTTCCHH---HHHHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTT
T ss_pred             -----ccHHHhcCCCCccccccccchH---HHHHHh---------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCC
Confidence                 0000011111111111111111   122221         123799999999999999999999999754     


Q ss_pred             ------CceeEEEEecC--------------------------CCcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHc
Q 017844          159 ------ASCRLILCCNS--------------------------SSKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE  205 (365)
Q Consensus       159 ------~~~~~Il~t~~--------------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~  205 (365)
                            .++.+|++||.                          ...+.+++.+|| ..+.|.+|+.+++..++...+.+.
T Consensus       153 ~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~  232 (311)
T 4fcw_A          153 GRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL  232 (311)
T ss_dssp             SCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred             CCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence                  25558888887                          335778999999 689999999999999998876542


Q ss_pred             ---------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 017844          206 ---------GLQLPSGFATRLAEKS---NRSLRRAILSFETCRV  237 (365)
Q Consensus       206 ---------~~~i~~~~~~~i~~~~---~g~lr~ai~~l~~~~~  237 (365)
                               .+.+++++++.+++.+   .|++|.+.+.++.++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~  276 (311)
T 4fcw_A          233 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE  276 (311)
T ss_dssp             HHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred             HHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence                     3468999999999964   5999999999987654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.81  E-value=6.2e-19  Score=158.53  Aligned_cols=195  Identities=18%  Similarity=0.273  Sum_probs=131.7

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHHc-------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      .+..+.+|++++|++.+++.+..++..             ....+++|+||||||||++++++++.+..+   .+.+++.
T Consensus         9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~---~~~v~~~   85 (285)
T 3h4m_A            9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT---FIRVVGS   85 (285)
T ss_dssp             ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE---EEEEEGG
T ss_pred             cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEehH
Confidence            455567899999999999999887743             233349999999999999999999975221   1111111


Q ss_pred             cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---------
Q 017844           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---------  142 (365)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L---------  142 (365)
                      .+                        .....+ .....++..+.....         ..+.|++|||+|.+         
T Consensus        86 ~~------------------------~~~~~~-~~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~~  131 (285)
T 3h4m_A           86 EL------------------------VKKFIG-EGASLVKDIFKLAKE---------KAPSIIFIDEIDAIAAKRTDALT  131 (285)
T ss_dssp             GG------------------------CCCSTT-HHHHHHHHHHHHHHH---------TCSEEEEEETTHHHHBCCSSSCC
T ss_pred             HH------------------------HHhccc-hHHHHHHHHHHHHHH---------cCCeEEEEECHHHhcccCccccC
Confidence            11                        000001 111123333333322         23479999999987         


Q ss_pred             --CHHHHHHHHHHHhhh-----cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844          143 --SREAQHSLRRTMEKY-----SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       143 --~~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~  212 (365)
                        +...+..+..++++.     ..++.+|++||.++.+.+++.+  |+. .+.|++|+.++..++++..+...+.. ++.
T Consensus       132 ~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~  210 (285)
T 3h4m_A          132 GGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDV  210 (285)
T ss_dssp             GGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred             CccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcC
Confidence              445566666666542     3467888889988899999998  884 89999999999999999888765543 233


Q ss_pred             HHHHHHHHcCC-CHHHHHHHHHHHHh
Q 017844          213 FATRLAEKSNR-SLRRAILSFETCRV  237 (365)
Q Consensus       213 ~~~~i~~~~~g-~lr~ai~~l~~~~~  237 (365)
                      .+..++..+.| +.|...++++.+..
T Consensus       211 ~~~~l~~~~~g~~~~~i~~l~~~a~~  236 (285)
T 3h4m_A          211 NLEEIAKMTEGCVGAELKAICTEAGM  236 (285)
T ss_dssp             CHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            47788888777 55566666655443

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.81  E-value=8e-19  Score=161.31  Aligned_cols=252  Identities=15%  Similarity=0.148  Sum_probs=161.0

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .|+++++|..+++++|++++++.+...+..+.  +++|+||||+|||++++++++.+.++.   ..+++.     +....
T Consensus        16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~~~~---~~i~~~-----~~~~~   85 (331)
T 2r44_A           16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMDLDF---HRIQFT-----PDLLP   85 (331)
T ss_dssp             HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTTCCE---EEEECC-----TTCCH
T ss_pred             HHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhCCCe---EEEecC-----CCCCh
Confidence            48999999999999999999999988887754  499999999999999999999763321   111110     00000


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh----
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----  157 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~----  157 (365)
                      .+.     .....+.  .. .+...           ....+      -...|++|||++.+++..++.|++.+++.    
T Consensus        86 ~~l-----~g~~~~~--~~-~~~~~-----------~~~g~------l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~  140 (331)
T 2r44_A           86 SDL-----IGTMIYN--QH-KGNFE-----------VKKGP------VFSNFILADEVNRSPAKVQSALLECMQEKQVTI  140 (331)
T ss_dssp             HHH-----HEEEEEE--TT-TTEEE-----------EEECT------TCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred             hhc-----CCceeec--CC-CCceE-----------eccCc------ccccEEEEEccccCCHHHHHHHHHHHhcCceee
Confidence            000     0000000  00 00000           00000      01269999999999999999999999874    


Q ss_pred             -------cCceeEEEEecCCC-----cccHHHhccce-eEEecCCCHHHHHHHHHHHHHH--------------------
Q 017844          158 -------SASCRLILCCNSSS-----KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK--------------------  204 (365)
Q Consensus       158 -------~~~~~~Il~t~~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~--------------------  204 (365)
                             +....+|.++|..+     .+.+++++||. .+.+++|+.++..++++..+..                    
T Consensus       141 ~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~  220 (331)
T 2r44_A          141 GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRN  220 (331)
T ss_dssp             TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHH
T ss_pred             CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHH
Confidence                   23344554444222     38899999997 5999999999999999987654                    


Q ss_pred             --cCCCCCHHHHHHHHHHc-----CC---------------CHHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHH
Q 017844          205 --EGLQLPSGFATRLAEKS-----NR---------------SLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIAS  262 (365)
Q Consensus       205 --~~~~i~~~~~~~i~~~~-----~g---------------~lr~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  262 (365)
                        .++.+++++++++++.+     .|               ++|.++++++.+...+.. .....+.    .+.+...+.
T Consensus       221 ~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l-~g~~~v~----~~dv~~~~~  295 (331)
T 2r44_A          221 EINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF-NNRDYVL----PEDIKEVAY  295 (331)
T ss_dssp             HHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH-TTCSBCC----HHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH-cCCCCCC----HHHHHHHHH
Confidence              26778999999998753     22               799999998865544321 1111121    234455555


Q ss_pred             HHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 017844          263 DIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYEL  301 (365)
Q Consensus       263 ~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l  301 (365)
                      .++..+......        ....+++++.|+.++...+
T Consensus       296 ~vl~~r~~~~~~--------~~~~~~~~~~i~~~i~~~~  326 (331)
T 2r44_A          296 DILNHRIILNYE--------AEAEGISTRQIIETILRKV  326 (331)
T ss_dssp             HHHTTTSEECHH--------HHHTTCCHHHHHHHHHHHC
T ss_pred             HHhHhhccCCHH--------HHhcCCCHHHHHHHHHhcC
Confidence            555433221111        1125778888888887654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.4e-18  Score=159.26  Aligned_cols=194  Identities=17%  Similarity=0.241  Sum_probs=129.9

Q ss_pred             ccccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus         4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      +++-...+|+++.|.+++++.|++.+..           | ..|. +|||||||||||++|+++|+++..+   .+.+++
T Consensus       173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~---fi~v~~  249 (437)
T 4b4t_I          173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT---FLRIVG  249 (437)
T ss_dssp             EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE---EEEEES
T ss_pred             eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC---EEEEEH
Confidence            4455557999999999999999887631           2 2333 9999999999999999999987322   111111


Q ss_pred             ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------
Q 017844           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------  144 (365)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------  144 (365)
                      ..+                     +.    .........+++++.......         +.|++|||+|.+..      
T Consensus       250 s~l---------------------~s----k~vGesek~ir~lF~~Ar~~a---------P~IIfiDEiDai~~~R~~~~  295 (437)
T 4b4t_I          250 SEL---------------------IQ----KYLGDGPRLCRQIFKVAGENA---------PSIVFIDEIDAIGTKRYDSN  295 (437)
T ss_dssp             GGG---------------------CC----SSSSHHHHHHHHHHHHHHHTC---------SEEEEEEEESSSSCCCSCSS
T ss_pred             HHh---------------------hh----ccCchHHHHHHHHHHHHHhcC---------CcEEEEehhhhhcccCCCCC
Confidence            111                     10    111112234556665554433         47999999997731      


Q ss_pred             -----H---HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844          145 -----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (365)
Q Consensus       145 -----~---~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~  211 (365)
                           .   ..+.|+..++..  ..++.+|++||+++.+++++++  |+. .|+|+.|+.++..++++.++.+..+. ++
T Consensus       296 ~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~d  374 (437)
T 4b4t_I          296 SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-ED  374 (437)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SC
T ss_pred             CCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-Cc
Confidence                 2   234555555543  3467899999999999999998  774 79999999999999999888654432 12


Q ss_pred             HHHHHHHHHcCC-CHHHHHHHHHHH
Q 017844          212 GFATRLAEKSNR-SLRRAILSFETC  235 (365)
Q Consensus       212 ~~~~~i~~~~~g-~lr~ai~~l~~~  235 (365)
                      -.++.||+.+.| +.++..+++..+
T Consensus       375 vdl~~LA~~T~GfSGADI~~l~~eA  399 (437)
T 4b4t_I          375 VNLETLVTTKDDLSGADIQAMCTEA  399 (437)
T ss_dssp             CCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHhCCCCCHHHHHHHHHHH
Confidence            247888888776 444444444443

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.4e-18  Score=157.96  Aligned_cols=193  Identities=16%  Similarity=0.218  Sum_probs=128.2

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHH-----------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      ++-...+|+++.|.+++++.|++.+.           -| ..|. +|||||||||||++|+++|+++..+   .+.+++.
T Consensus       201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~---fi~vs~s  277 (467)
T 4b4t_H          201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT---FIRVIGS  277 (467)
T ss_dssp             ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE---EEEEEGG
T ss_pred             cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC---eEEEEhH
Confidence            34334689999999999999988763           13 3333 9999999999999999999987432   1111111


Q ss_pred             cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------
Q 017844           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------  144 (365)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------  144 (365)
                      .+                     +   . .........+++++......         .+.|++|||+|.+..       
T Consensus       278 ~L---------------------~---s-k~vGesek~ir~lF~~Ar~~---------aP~IIfiDEiDai~~~R~~~~~  323 (467)
T 4b4t_H          278 EL---------------------V---Q-KYVGEGARMVRELFEMARTK---------KACIIFFDEIDAVGGARFDDGA  323 (467)
T ss_dssp             GG---------------------C---C-CSSSHHHHHHHHHHHHHHHT---------CSEEEEEECCTTTSBCCSSSSC
T ss_pred             Hh---------------------h---c-ccCCHHHHHHHHHHHHHHhc---------CCceEeecccccccccccCcCC
Confidence            11                     1   0 11111223456666555443         347999999998731       


Q ss_pred             ----H---HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844          145 ----E---AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       145 ----~---~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~  212 (365)
                          .   ..+.++..|+..  ..++.+|++||+++.+++++++  |+. .|+|+.|+.+++.++++.++++..+. ++-
T Consensus       324 ~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dv  402 (467)
T 4b4t_H          324 GGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGI  402 (467)
T ss_dssp             GGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSC
T ss_pred             CccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCC
Confidence                1   234455555533  3457788999999999999987  884 89999999999999999887654432 122


Q ss_pred             HHHHHHHHcCC-CHHHHHHHHHHH
Q 017844          213 FATRLAEKSNR-SLRRAILSFETC  235 (365)
Q Consensus       213 ~~~~i~~~~~g-~lr~ai~~l~~~  235 (365)
                      .++.||+.+.| +..+..+++..+
T Consensus       403 dl~~LA~~T~GfSGADI~~l~~eA  426 (467)
T 4b4t_H          403 RWELISRLCPNSTGAELRSVCTEA  426 (467)
T ss_dssp             CHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHH
Confidence            37788888876 334444444433

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.78  E-value=6.4e-18  Score=158.36  Aligned_cols=193  Identities=18%  Similarity=0.226  Sum_probs=128.8

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHH-----------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      ++-.+.+|+++.|.+++++.|++.+.           .| ..|. +|||||||||||++|+++|+++..+   .+.+++.
T Consensus       173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~---f~~v~~s  249 (434)
T 4b4t_M          173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT---FLKLAAP  249 (434)
T ss_dssp             ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGG
T ss_pred             CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC---EEEEehh
Confidence            34455689999999999999987652           12 2333 9999999999999999999987332   1111111


Q ss_pred             cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------
Q 017844           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------  143 (365)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--------  143 (365)
                      .+                     +   . .........++.++.......         +.|++|||+|.+.        
T Consensus       250 ~l---------------------~---~-~~vGese~~ir~lF~~A~~~a---------P~IifiDEiDal~~~R~~~~~  295 (434)
T 4b4t_M          250 QL---------------------V---Q-MYIGEGAKLVRDAFALAKEKA---------PTIIFIDELDAIGTKRFDSEK  295 (434)
T ss_dssp             GG---------------------C---S-SCSSHHHHHHHHHHHHHHHHC---------SEEEEEECTHHHHCCCSSGGG
T ss_pred             hh---------------------h---h-cccchHHHHHHHHHHHHHhcC---------CeEEeecchhhhhhccCCCCC
Confidence            11                     1   0 111112234556665554433         3799999998761        


Q ss_pred             ---HH---HHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844          144 ---RE---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       144 ---~~---~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~  212 (365)
                         ..   ..+.|+..|+...  .++.+|.+||+++.+++++++  |+. .|+|+.|+.+++.++++.++.+.... ++-
T Consensus       296 ~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dv  374 (434)
T 4b4t_M          296 SGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDI  374 (434)
T ss_dssp             GTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCC
T ss_pred             CCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcC
Confidence               12   2345666666543  356788899999999999988  774 89999999999999999888765432 112


Q ss_pred             HHHHHHHHcCC-CHHHHHHHHHHH
Q 017844          213 FATRLAEKSNR-SLRRAILSFETC  235 (365)
Q Consensus       213 ~~~~i~~~~~g-~lr~ai~~l~~~  235 (365)
                      .++.||+.+.| +.++.-+++..+
T Consensus       375 dl~~lA~~t~G~sGADi~~l~~eA  398 (434)
T 4b4t_M          375 NWQELARSTDEFNGAQLKAVTVEA  398 (434)
T ss_dssp             CHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CHHHHHHhCCCCCHHHHHHHHHHH
Confidence            37888888776 444444444433

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.78  E-value=3.9e-19  Score=149.66  Aligned_cols=171  Identities=15%  Similarity=0.281  Sum_probs=113.5

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      +|.++|+|.+|++++|+++.++.+..++..+...+++|+||+|+|||++++.+++.+.+...... ..+..+      ..
T Consensus        11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~~~~~------~~   83 (195)
T 1jbk_A           11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG-LKGRRV------LA   83 (195)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG-GTTCEE------EE
T ss_pred             HHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh-hcCCcE------EE
Confidence            58899999999999999999999999998776677999999999999999999998754221100 000000      00


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--------HHHHHHHHH
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--------EAQHSLRRT  153 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--------~~~~~Ll~~  153 (365)
                      .++  ...       .............+.+.+..+..        ..++.+++|||++.+..        ..++.|...
T Consensus        84 ~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~  146 (195)
T 1jbk_A           84 LDM--GAL-------VAGAKYRGEFEERLKGVLNDLAK--------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA  146 (195)
T ss_dssp             ECH--HHH-------HTTTCSHHHHHHHHHHHHHHHHH--------STTTEEEEEETGGGGTT------CCCCHHHHHHH
T ss_pred             eeH--HHH-------hccCCccccHHHHHHHHHHHHhh--------cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh
Confidence            000  000       00000000001123333333332        23457999999998853        235666666


Q ss_pred             HhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHH
Q 017844          154 MEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVL  198 (365)
Q Consensus       154 le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL  198 (365)
                      ++.  .++.+|++++...     .+.+++.+||..+.|++|+.+++.+++
T Consensus       147 ~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          147 LAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             hcc--CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence            654  3677888888765     578999999999999999999988765

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.77  E-value=2.3e-18  Score=161.07  Aligned_cols=217  Identities=15%  Similarity=0.209  Sum_probs=140.1

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCC---CCccceecccccee
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE----QDCPHLLFYGPPGSGKKTLIMALLRQVFGP---GAEKVKVENKTWKI   75 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~---~~~~i~~~~~~~~~   75 (365)
                      |..+|+|   ++++|++..++.+..++..    +...+++|+||+|+||||+++.+++.+...   ....+++++... .
T Consensus        13 l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~-~   88 (386)
T 2qby_A           13 LLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI-D   88 (386)
T ss_dssp             GSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH-C
T ss_pred             CCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC-C
Confidence            4556666   7789999999999988864    333449999999999999999999976432   223333433211 0


Q ss_pred             cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC----HHHHHHHH
Q 017844           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS----REAQHSLR  151 (365)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~----~~~~~~Ll  151 (365)
                      .+    .... ..+.  ..+.......+. ......+.+......       .+.+.+++|||++.+.    .+....|+
T Consensus        89 ~~----~~~~-~~i~--~~l~~~~~~~~~-~~~~~~~~l~~~l~~-------~~~~~vlilDE~~~l~~~~~~~~l~~l~  153 (386)
T 2qby_A           89 TP----YRVL-ADLL--ESLDVKVPFTGL-SIAELYRRLVKAVRD-------YGSQVVIVLDEIDAFVKKYNDDILYKLS  153 (386)
T ss_dssp             SH----HHHH-HHHT--TTTSCCCCSSSC-CHHHHHHHHHHHHHT-------CCSCEEEEEETHHHHHHSSCSTHHHHHH
T ss_pred             CH----HHHH-HHHH--HHhCCCCCCCCC-CHHHHHHHHHHHHhc-------cCCeEEEEEcChhhhhccCcCHHHHHHh
Confidence            00    0000 0000  000000001111 111111222222211       2346899999998775    34555666


Q ss_pred             HHHhhh-cCceeEEEEecCCC---cccHHHhccc--eeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcC-
Q 017844          152 RTMEKY-SASCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEKSN-  222 (365)
Q Consensus       152 ~~le~~-~~~~~~Il~t~~~~---~l~~~l~sR~--~~i~~~~~~~~~~~~iL~~~~~~~--~~~i~~~~~~~i~~~~~-  222 (365)
                      +.+++. ..++.+|++++...   .+.+.+.+|+  ..+.|++++.+++.+++...+...  ...+++++++.+++.+. 
T Consensus       154 ~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (386)
T 2qby_A          154 RINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR  233 (386)
T ss_dssp             HHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred             hchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence            666542 34677888888773   5778899999  689999999999999999887653  35789999999999888 


Q ss_pred             --CCHHHHHHHHHHHHhc
Q 017844          223 --RSLRRAILSFETCRVQ  238 (365)
Q Consensus       223 --g~lr~ai~~l~~~~~~  238 (365)
                        |++|.++++++.++..
T Consensus       234 ~~G~~r~~~~ll~~a~~~  251 (386)
T 2qby_A          234 EHGDARRALDLLRVSGEI  251 (386)
T ss_dssp             TTCCHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHH
Confidence              9999999999877654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.77  E-value=2.6e-17  Score=154.13  Aligned_cols=190  Identities=21%  Similarity=0.283  Sum_probs=127.6

Q ss_pred             CCCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~   74 (365)
                      ...+|+|+.|.+++++.|+..+..           | ..|. +|||||||||||++|+++|+++..+   .+.+++..+ 
T Consensus       167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~---~~~v~~~~l-  242 (428)
T 4b4t_K          167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA---FIRVNGSEF-  242 (428)
T ss_dssp             CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE---EEEEEGGGT-
T ss_pred             CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEecchh-
Confidence            335899999999999999887631           3 2233 9999999999999999999987322   111111111 


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------  143 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------  143 (365)
                                          +    +.........+++++......         .+.|+++||+|.+.           
T Consensus       243 --------------------~----~~~~Ge~e~~ir~lF~~A~~~---------aP~IifiDEiD~i~~~R~~~~~~~~  289 (428)
T 4b4t_K          243 --------------------V----HKYLGEGPRMVRDVFRLAREN---------APSIIFIDEVDSIATKRFDAQTGSD  289 (428)
T ss_dssp             --------------------C----CSSCSHHHHHHHHHHHHHHHT---------CSEEEEEECTHHHHCSCSSSCSCCC
T ss_pred             --------------------h----ccccchhHHHHHHHHHHHHHc---------CCCeeechhhhhhhccccCCCCCCC
Confidence                                1    011111223456666655443         34799999998551           


Q ss_pred             ---HHHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEec-CCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 017844          144 ---REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRIN-SPTEEQIVKVLEFIAKKEGLQLPSGFA  214 (365)
Q Consensus       144 ---~~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~-~~~~~~~~~iL~~~~~~~~~~i~~~~~  214 (365)
                         ....+.|+..|+..  ..++.+|++||+++.+++++++  |+. .|+|+ .|+.++...+++.++.+..+. ++..+
T Consensus       290 ~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl  368 (428)
T 4b4t_K          290 REVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADL  368 (428)
T ss_dssp             CHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCH
T ss_pred             hHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCH
Confidence               12355677777754  3457899999999999999998  664 79996 789999999999888755432 22247


Q ss_pred             HHHHHHcCC-CHHHHHHHHHHH
Q 017844          215 TRLAEKSNR-SLRRAILSFETC  235 (365)
Q Consensus       215 ~~i~~~~~g-~lr~ai~~l~~~  235 (365)
                      +.+|..+.| +.++..+++..+
T Consensus       369 ~~lA~~t~G~sgadi~~l~~eA  390 (428)
T 4b4t_K          369 DSLIIRNDSLSGAVIAAIMQEA  390 (428)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHHHH
Confidence            888888776 444444444443

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.76  E-value=3e-18  Score=158.50  Aligned_cols=229  Identities=14%  Similarity=0.107  Sum_probs=134.5

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCC---CccceeccccceecCCCcc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG---AEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~---~~~i~~~~~~~~~~~~~~~   81 (365)
                      ..-+|.+|++++|++.+++.+......+...+++|+||||||||++|+++++.+....   ...  +++...  .++..+
T Consensus        16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~--~~~~~~--~~~~~~   91 (350)
T 1g8p_A           16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP--VSSPNV--EMIPDW   91 (350)
T ss_dssp             --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT--TCCSSG--GGSCTT
T ss_pred             CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCcccccccccc--cccccc--ccccch
Confidence            3446789999999999887766655444445699999999999999999999663210   000  111111  111111


Q ss_pred             eecccccccc----ccceecCCCCc--CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 017844           82 IDLELTTLSS----ANHVELSPSDA--GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME  155 (365)
Q Consensus        82 ~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le  155 (365)
                      ..+  ..+..    ...+.......  .......+...+.........+........+++|||++.++.+.++.|++.++
T Consensus        92 ~~~--~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le  169 (350)
T 1g8p_A           92 ATV--LSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQ  169 (350)
T ss_dssp             CCC--SCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred             hhh--hccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHh
Confidence            111  00000    00011000000  00000000111110000000000001124799999999999999999999998


Q ss_pred             hh-------------cCceeEEEEecCCC-cccHHHhcccee-EEecCCC-HHHHHHHHHHH------------------
Q 017844          156 KY-------------SASCRLILCCNSSS-KVTEAIRSRCLN-IRINSPT-EEQIVKVLEFI------------------  201 (365)
Q Consensus       156 ~~-------------~~~~~~Il~t~~~~-~l~~~l~sR~~~-i~~~~~~-~~~~~~iL~~~------------------  201 (365)
                      +.             +.++.+|.++|..+ .+.+++++||.. +.+++|+ .++..+++..+                  
T Consensus       170 ~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~  249 (350)
T 1g8p_A          170 SGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKD  249 (350)
T ss_dssp             HSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccch
Confidence            73             23566777777544 789999999974 9999994 55555666542                  


Q ss_pred             -----------HHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHhcC
Q 017844          202 -----------AKKEGLQLPSGFATRLAEKSNR----SLRRAILSFETCRVQQ  239 (365)
Q Consensus       202 -----------~~~~~~~i~~~~~~~i~~~~~g----~lr~ai~~l~~~~~~~  239 (365)
                                 ....++.+++++++.|++.+.+    ++|.++++++.+...+
T Consensus       250 ~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A  302 (350)
T 1g8p_A          250 MDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALA  302 (350)
T ss_dssp             HHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence                       2234568999999999998766    8999999998765443

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.76  E-value=3.4e-17  Score=153.62  Aligned_cols=189  Identities=15%  Similarity=0.185  Sum_probs=127.0

Q ss_pred             CCCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~   75 (365)
                      ..+|+++.|.+++++.|+..+..           | ..|. +|||||||||||++|+++|+++..+.   +.+++..+  
T Consensus       177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~~s~l--  251 (437)
T 4b4t_L          177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSPASGI--  251 (437)
T ss_dssp             SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGGGT--
T ss_pred             CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEehhhh--
Confidence            35899999999999999887741           3 2333 99999999999999999999873321   11111111  


Q ss_pred             cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------
Q 017844           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------  144 (365)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----------  144 (365)
                                         +    +.+.......++..+......         .+.|++|||+|.+..           
T Consensus       252 -------------------~----sk~~Gese~~ir~~F~~A~~~---------~P~IifiDEiDai~~~R~~~~~~~~~  299 (437)
T 4b4t_L          252 -------------------V----DKYIGESARIIREMFAYAKEH---------EPCIIFMDEVDAIGGRRFSEGTSADR  299 (437)
T ss_dssp             -------------------C----CSSSSHHHHHHHHHHHHHHHS---------CSEEEEEECCCSSSCCCSSSCCSSTT
T ss_pred             -------------------c----cccchHHHHHHHHHHHHHHhc---------CCceeeeecccccccccccCCCCcch
Confidence                               1    011111122355555554433         347999999998731           


Q ss_pred             ---HHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhcc--c-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017844          145 ---EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRSR--C-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (365)
Q Consensus       145 ---~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~sR--~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~  216 (365)
                         ...+.||..|+..  ..++.+|++||+++.++++++++  + ..|+|+.|+.+++.++++.++.+.... ++..++.
T Consensus       300 ~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~  378 (437)
T 4b4t_L          300 EIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEA  378 (437)
T ss_dssp             HHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHH
T ss_pred             HHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHH
Confidence               1345567777654  34578999999999999999876  4 379999999999999999888764432 2223788


Q ss_pred             HHHHcCC-CHHHHHHHHHHH
Q 017844          217 LAEKSNR-SLRRAILSFETC  235 (365)
Q Consensus       217 i~~~~~g-~lr~ai~~l~~~  235 (365)
                      +|+.+.| +.++..+++..+
T Consensus       379 lA~~t~G~sGADi~~l~~eA  398 (437)
T 4b4t_L          379 AVKMSDGFNGADIRNCATEA  398 (437)
T ss_dssp             HHHTCCSCCHHHHHHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHHHH
Confidence            8888776 444444444433

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.75  E-value=4.8e-17  Score=144.63  Aligned_cols=204  Identities=13%  Similarity=0.104  Sum_probs=123.7

Q ss_pred             CCCCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      .+|++++|+....+.+...+..  ....+++|+||+|||||++|++++..........+.+++..+ .       +   .
T Consensus         3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~-~-------~---~   71 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL-N-------E---N   71 (265)
T ss_dssp             -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS-C-------H---H
T ss_pred             cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC-C-------h---h
Confidence            3789999998888777665543  223449999999999999999999865433222333333221 0       0   0


Q ss_pred             ccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh----------
Q 017844           88 TLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----------  157 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~----------  157 (365)
                      ... ...+....   +.+... .......+.         .....+++|||++.++.+.++.|++.+++.          
T Consensus        72 ~~~-~~l~g~~~---~~~~g~-~~~~~~~l~---------~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~  137 (265)
T 2bjv_A           72 LLD-SELFGHEA---GAFTGA-QKRHPGRFE---------RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQP  137 (265)
T ss_dssp             HHH-HHHHCCC-------------CCCCHHH---------HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--C
T ss_pred             HHH-HHhcCCcc---cccccc-cccccchhh---------hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCccc
Confidence            000 00000000   000000 000000000         012369999999999999999999999863          


Q ss_pred             -cCceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHH----HHHcCC----CCCHHHHHHH
Q 017844          158 -SASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFI----AKKEGL----QLPSGFATRL  217 (365)
Q Consensus       158 -~~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~----~~~~~~----~i~~~~~~~i  217 (365)
                       +.++++|++||...       .+.+.+.+|+.  .+.+++++.  +++..++..+    +.+.+.    .+++++++.+
T Consensus       138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L  217 (265)
T 2bjv_A          138 LQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETL  217 (265)
T ss_dssp             EECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHH
T ss_pred             ccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHH
Confidence             34678888888752       36789999984  577777765  5666554443    444554    6899999999


Q ss_pred             HHH-cCCCHHHHHHHHHHHHhc
Q 017844          218 AEK-SNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       218 ~~~-~~g~lr~ai~~l~~~~~~  238 (365)
                      ... +.||+|++.+.++.++..
T Consensus       218 ~~~~~~gn~reL~~~l~~~~~~  239 (265)
T 2bjv_A          218 LNYRWPGNIRELKNVVERSVYR  239 (265)
T ss_dssp             HHSCCTTHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCCHHHHHHHHHHHHHh
Confidence            876 499999999999987654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.75  E-value=3.6e-17  Score=155.69  Aligned_cols=198  Identities=18%  Similarity=0.265  Sum_probs=134.2

Q ss_pred             cccc-cCCCCCCccccCHHHHHHHHHHHHc-----------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844            3 WVDK-YRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (365)
Q Consensus         3 w~~k-~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~   69 (365)
                      |.++ ..+.+|++++|++++++.+++.+..           .+.+. ++|+||||||||++++++++++..+   .+.++
T Consensus         5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~---f~~is   81 (476)
T 2ce7_A            5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP---FFHIS   81 (476)
T ss_dssp             CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC---EEEEE
T ss_pred             eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---eeeCC
Confidence            4444 3445899999999999888876642           23343 9999999999999999999976322   12222


Q ss_pred             cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----
Q 017844           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (365)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----  144 (365)
                      +..+                     ....   .+ .....++..+.....         ..+.||+|||+|.+..     
T Consensus        82 ~~~~---------------------~~~~---~g-~~~~~~r~lf~~A~~---------~~p~ILfIDEid~l~~~r~~~  127 (476)
T 2ce7_A           82 GSDF---------------------VELF---VG-VGAARVRDLFAQAKA---------HAPCIVFIDEIDAVGRHRGAG  127 (476)
T ss_dssp             GGGT---------------------TTCC---TT-HHHHHHHHHHHHHHH---------TCSEEEEEETGGGTCCC----
T ss_pred             HHHH---------------------HHHH---hc-ccHHHHHHHHHHHHh---------cCCCEEEEechhhhhhhcccc
Confidence            2211                     1100   01 111234445444332         2358999999988742     


Q ss_pred             ---------HHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCC
Q 017844          145 ---------EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLP  210 (365)
Q Consensus       145 ---------~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~  210 (365)
                               ..++.|+..++..  ..++.+|.+||.++.+++++++  |+. .+.++.|+.+++.++++.++++..+. +
T Consensus       128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~  206 (476)
T 2ce7_A          128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-E  206 (476)
T ss_dssp             -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-T
T ss_pred             cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-c
Confidence                     2456677777642  3467888889888888888876  775 89999999999999999887654432 2


Q ss_pred             HHHHHHHHHHcCCCH-HHHHHHHHHHHhc
Q 017844          211 SGFATRLAEKSNRSL-RRAILSFETCRVQ  238 (365)
Q Consensus       211 ~~~~~~i~~~~~g~l-r~ai~~l~~~~~~  238 (365)
                      +..+..++..+.|.. |+..++++.++..
T Consensus       207 ~v~l~~la~~t~G~sgadL~~lv~~Aal~  235 (476)
T 2ce7_A          207 DVNLEIIAKRTPGFVGADLENLVNEAALL  235 (476)
T ss_dssp             TCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            223778999999977 7788888766544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.75  E-value=1.6e-17  Score=150.46  Aligned_cols=194  Identities=21%  Similarity=0.235  Sum_probs=130.1

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHHc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVTE-----------Q-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      .+..+.+|++++|++.+++.++.++..           + ..+ +++|+||||||||++|+++++.+..   ..+.+++.
T Consensus         7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~---~~i~v~~~   83 (301)
T 3cf0_A            7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISIKGP   83 (301)
T ss_dssp             EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---EEEEECHH
T ss_pred             ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC---CEEEEEhH
Confidence            456778999999999999999988753           1 223 3999999999999999999997631   22222221


Q ss_pred             cceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH------
Q 017844           72 TWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------  145 (365)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~------  145 (365)
                      .+                     ....   .+. ....++..+.....         ..+.+++|||+|.+...      
T Consensus        84 ~l---------------------~~~~---~g~-~~~~~~~~f~~a~~---------~~p~il~iDEid~l~~~~~~~~~  129 (301)
T 3cf0_A           84 EL---------------------LTMW---FGE-SEANVREIFDKARQ---------AAPCVLFFDELDSIAKARGGNIG  129 (301)
T ss_dssp             HH---------------------HHHH---HTT-CTTHHHHHHHHHHH---------TCSEEEEECSTTHHHHHHTTTTC
T ss_pred             HH---------------------Hhhh---cCc-hHHHHHHHHHHHHh---------cCCeEEEEEChHHHhhccCCCcC
Confidence            11                     0000   000 01124444444332         23479999999976543      


Q ss_pred             --------HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844          146 --------AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       146 --------~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~  212 (365)
                              .++.|+..++..  ..++.+|++||.++.+++++++  |+. .+.|+.|+.+++.++++.++.+.+.. ++.
T Consensus       130 ~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~  208 (301)
T 3cf0_A          130 DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDV  208 (301)
T ss_dssp             CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSC
T ss_pred             CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccc
Confidence                    357788888753  3467888999999889999988  884 89999999999999999988776543 222


Q ss_pred             HHHHHHHHcCC-CHHHHHHHHHHHH
Q 017844          213 FATRLAEKSNR-SLRRAILSFETCR  236 (365)
Q Consensus       213 ~~~~i~~~~~g-~lr~ai~~l~~~~  236 (365)
                      .++.++..+.| +.++..++++.++
T Consensus       209 ~~~~la~~~~g~sg~dl~~l~~~a~  233 (301)
T 3cf0_A          209 DLEFLAKMTNGFSGADLTEICQRAC  233 (301)
T ss_dssp             CHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34566665554 3345555555443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.75  E-value=3.3e-18  Score=175.70  Aligned_cols=205  Identities=18%  Similarity=0.264  Sum_probs=139.0

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .|.++|||.+|++++|+++.++.+...+..+..++++|+||||+|||++++.+++.+.+..... ...+..         
T Consensus       159 ~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~-~l~~~~---------  228 (854)
T 1qvr_A          159 DLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE-GLKGKR---------  228 (854)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT-TSTTCE---------
T ss_pred             hHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCch-hhcCCe---------
Confidence            4889999999999999999999999999887777799999999999999999999874322110 000000         


Q ss_pred             eeccccccccccceecCCCCc------CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------HHHH
Q 017844           82 IDLELTTLSSANHVELSPSDA------GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQ  147 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--------~~~~  147 (365)
                                  .+.+.....      .......++..+..+..        ..++.|++|||+|.+.        .++.
T Consensus       229 ------------~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~--------~~~~~iL~IDEi~~l~~~~~~~g~~~~~  288 (854)
T 1qvr_A          229 ------------IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ--------SQGEVILFIDELHTVVGAGKAEGAVDAG  288 (854)
T ss_dssp             ------------EEEECC-----------CHHHHHHHHHHHHHT--------TCSSEEEEECCC----------------
T ss_pred             ------------EEEeehHHhhccCccchHHHHHHHHHHHHHHh--------cCCCeEEEEecHHHHhccCCccchHHHH
Confidence                        011111110      00111123344444332        1245799999999986        3455


Q ss_pred             HHHHHHHhhhcCceeEEEEecCCC----cccHHHhccceeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Q 017844          148 HSLRRTMEKYSASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----KEGLQLPSGFATRLAE  219 (365)
Q Consensus       148 ~~Ll~~le~~~~~~~~Il~t~~~~----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~----~~~~~i~~~~~~~i~~  219 (365)
                      +.|...++.  ..+.+|++|+..+    .+.+++.+||..+.|++|+.++...+++..+.    ..++.++++++..+++
T Consensus       289 ~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~  366 (854)
T 1qvr_A          289 NMLKPALAR--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAAT  366 (854)
T ss_dssp             ---HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred             HHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHH
Confidence            667777764  3567888887654    36789999999999999999999999987665    3578899999999999


Q ss_pred             HcCC------CHHHHHHHHHHHHhc
Q 017844          220 KSNR------SLRRAILSFETCRVQ  238 (365)
Q Consensus       220 ~~~g------~lr~ai~~l~~~~~~  238 (365)
                      .+.|      -++.++.+++.++..
T Consensus       367 ls~r~i~~~~lp~kai~lldea~a~  391 (854)
T 1qvr_A          367 LSHRYITERRLPDKAIDLIDEAAAR  391 (854)
T ss_dssp             HHHHHCCSSCTHHHHHHHHHHHHHH
T ss_pred             HHhhhcccccChHHHHHHHHHHHHH
Confidence            7743      378899998876654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.75  E-value=8.1e-18  Score=170.97  Aligned_cols=200  Identities=15%  Similarity=0.236  Sum_probs=141.5

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .|.++++|..+++++|+++.++.+...+.....+|++|+||||||||++|+++++.+.+........++ .         
T Consensus       169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~-~---------  238 (758)
T 3pxi_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK-R---------  238 (758)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC-C---------
T ss_pred             HHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCC-e---------
Confidence            488999999999999999999999999988877889999999999999999999987553321110000 0         


Q ss_pred             eeccccccccccceecCC-CCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           82 IDLELTTLSSANHVELSP-SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                                  .+.+.. ..........++..+..+..         .++.|++||    ...++++.|+..++.  ..
T Consensus       239 ------------~~~~~~g~~~~G~~e~~l~~~~~~~~~---------~~~~iLfiD----~~~~~~~~L~~~l~~--~~  291 (758)
T 3pxi_A          239 ------------VMTLDMGTKYRGEFEDRLKKVMDEIRQ---------AGNIILFID----AAIDASNILKPSLAR--GE  291 (758)
T ss_dssp             ------------EECC----------CTTHHHHHHHHHT---------CCCCEEEEC----C--------CCCTTS--SS
T ss_pred             ------------EEEecccccccchHHHHHHHHHHHHHh---------cCCEEEEEc----CchhHHHHHHHHHhc--CC
Confidence                        011111 00011111134555555543         234699999    344577778887773  46


Q ss_pred             eeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CH
Q 017844          161 CRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSNR------SL  225 (365)
Q Consensus       161 ~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~~~~g------~l  225 (365)
                      +.+|.+||..+     .+++++++||..+.|++|+.+++.++++.++..    .++.++++++..+++.+.+      .+
T Consensus       292 v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p  371 (758)
T 3pxi_A          292 LQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP  371 (758)
T ss_dssp             CEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred             EEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCC
Confidence            88888888877     688999999999999999999999999977765    6788999999999987643      45


Q ss_pred             HHHHHHHHHHHhc
Q 017844          226 RRAILSFETCRVQ  238 (365)
Q Consensus       226 r~ai~~l~~~~~~  238 (365)
                      +.++.+++.++..
T Consensus       372 ~~ai~ll~~a~~~  384 (758)
T 3pxi_A          372 DKAIDLIDEAGSK  384 (758)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            7899998876654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.74  E-value=1.8e-17  Score=161.58  Aligned_cols=196  Identities=16%  Similarity=0.212  Sum_probs=123.9

Q ss_pred             CccccCHHHHHHHHHHHH------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844           13 DQVIVHQDIAQNLKKLVT------EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      ++++|+++++..+...+.      ....++++|+|||||||||+++++++.+.. ....+.+.+..          +.  
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~~~----------~~--  147 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGGVR----------DE--  147 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC----------------
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecccc----------hh--
Confidence            347899999887766543      123345999999999999999999997622 22211111100          00  


Q ss_pred             cccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhhc----
Q 017844           87 TTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE----AQHSLRRTMEKYS----  158 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~----~~~~Ll~~le~~~----  158 (365)
                           .........-.+..    .......+...       .....+++|||++.+...    .++.|++.|++..    
T Consensus       148 -----~~~~g~~~~~ig~~----~~~~~~~~~~a-------~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~  211 (543)
T 3m6a_A          148 -----SEIRGHRRTYVGAM----PGRIIQGMKKA-------GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSF  211 (543)
T ss_dssp             -------------------------CHHHHHHTT-------CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBC
T ss_pred             -----hhhhhHHHHHhccC----chHHHHHHHHh-------hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhccee
Confidence                 00000000000000    00111111111       112349999999999877    4578888886432    


Q ss_pred             -----------CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHH
Q 017844          159 -----------ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK-----KE-----GLQLPSGFATRL  217 (365)
Q Consensus       159 -----------~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~-----~~-----~~~i~~~~~~~i  217 (365)
                                 .++.||+++|....+++++++||.++.|++|+.++...++..++.     +.     ++.++++++..+
T Consensus       212 ~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l  291 (543)
T 3m6a_A          212 SDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDI  291 (543)
T ss_dssp             CCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHH
T ss_pred             ecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHH
Confidence                       456788899999999999999999999999999999999987652     22     456789999998


Q ss_pred             HHHcC--CCHHHHHHHHHHHHh
Q 017844          218 AEKSN--RSLRRAILSFETCRV  237 (365)
Q Consensus       218 ~~~~~--g~lr~ai~~l~~~~~  237 (365)
                      ++...  |++|.+.+.++.++.
T Consensus       292 ~~~~~~~~~vR~L~~~i~~~~~  313 (543)
T 3m6a_A          292 IRYYTREAGVRSLERQLAAICR  313 (543)
T ss_dssp             HHHHCCCSSSHHHHHHHHHHHH
T ss_pred             HHhCChhhchhHHHHHHHHHHH
Confidence            87544  789988888876554

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.73  E-value=2e-17  Score=168.19  Aligned_cols=209  Identities=14%  Similarity=0.189  Sum_probs=141.8

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .|.++++|.+|++++|++..++.+...+......+++|+||||||||++++.+++.+.+........++..+        
T Consensus       175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~--------  246 (758)
T 1r6b_X          175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY--------  246 (758)
T ss_dssp             BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE--------
T ss_pred             hHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE--------
Confidence            588999999999999999999999999987777779999999999999999999987543321111111000        


Q ss_pred             eeccccccccccceecCC-CCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHH
Q 017844           82 IDLELTTLSSANHVELSP-SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLR  151 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~~~~Ll  151 (365)
                       ..     ..   ..+.. ..........++..++.+.         ..+..+++|||+|.+.         .+..+.|.
T Consensus       247 -~~-----~~---~~l~~~~~~~g~~e~~l~~~~~~~~---------~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~  308 (758)
T 1r6b_X          247 -SL-----DI---GSLLAGTKYRGDFEKRFKALLKQLE---------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIK  308 (758)
T ss_dssp             -EC-----CC---C---CCCCCSSCHHHHHHHHHHHHS---------SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHS
T ss_pred             -EE-----cH---HHHhccccccchHHHHHHHHHHHHH---------hcCCeEEEEechHHHhhcCCCCcchHHHHHHHH
Confidence             00     00   00010 0111111112333333332         1234899999999882         23344444


Q ss_pred             HHHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC
Q 017844          152 RTMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKK----EGLQLPSGFATRLAEKSN  222 (365)
Q Consensus       152 ~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~----~~~~i~~~~~~~i~~~~~  222 (365)
                      ..++.  ....+|.+++.++     ..++++.+||..+.|++|+.+++.+++...+..    .++.++++++..++..+.
T Consensus       309 ~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~  386 (758)
T 1r6b_X          309 PLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAV  386 (758)
T ss_dssp             SCSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             HHHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Confidence            44443  3567778877543     466889999999999999999999999887765    688899999999998765


Q ss_pred             C------CHHHHHHHHHHHHhc
Q 017844          223 R------SLRRAILSFETCRVQ  238 (365)
Q Consensus       223 g------~lr~ai~~l~~~~~~  238 (365)
                      |      .+..++.+++.++..
T Consensus       387 ~~i~~~~lp~~~i~lld~a~~~  408 (758)
T 1r6b_X          387 KYINDRHLPDKAIDVIDEAGAR  408 (758)
T ss_dssp             HHCTTSCTTHHHHHHHHHHHHH
T ss_pred             hhcccccCchHHHHHHHHHHHH
Confidence            4      345788888766543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.73  E-value=6.5e-17  Score=164.30  Aligned_cols=185  Identities=18%  Similarity=0.351  Sum_probs=134.6

Q ss_pred             CccccCHHHHHHHHHHHHcCC-------CC--eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           13 DQVIVHQDIAQNLKKLVTEQD-------CP--HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~~-------~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      ++++|++.+++.+...+....       .|  +++|+||+|||||++|+++++.+.......+.+++..+          
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~----------  560 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY----------  560 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG----------
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc----------
Confidence            468899999988888776321       11  59999999999999999999988766555566665443          


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh------
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------  157 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~------  157 (365)
                                 .+......+        .+...+..         ..+.|++|||++.++++.++.|++.|++.      
T Consensus       561 -----------~~~~~~~~~--------~l~~~~~~---------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~  612 (758)
T 3pxi_A          561 -----------MEKHSTSGG--------QLTEKVRR---------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSK  612 (758)
T ss_dssp             -----------CSSCCCC-----------CHHHHHH---------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC---
T ss_pred             -----------ccccccccc--------hhhHHHHh---------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCC
Confidence                       000000001        11111111         13469999999999999999999999972      


Q ss_pred             -----cCceeEEEEecCCCc------------ccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHc---------CCCCC
Q 017844          158 -----SASCRLILCCNSSSK------------VTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE---------GLQLP  210 (365)
Q Consensus       158 -----~~~~~~Il~t~~~~~------------l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~---------~~~i~  210 (365)
                           ..++.+|++||....            +.+++.+|| .++.|++++.+++..++...+...         .+.++
T Consensus       613 g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~  692 (758)
T 3pxi_A          613 GRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELT  692 (758)
T ss_dssp             --CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred             CCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence                 346788999986443            789999999 799999999999999998877542         34689


Q ss_pred             HHHHHHHHHH---cCCCHHHHHHHHHHH
Q 017844          211 SGFATRLAEK---SNRSLRRAILSFETC  235 (365)
Q Consensus       211 ~~~~~~i~~~---~~g~lr~ai~~l~~~  235 (365)
                      +++++.|++.   ..|++|.+.+.++..
T Consensus       693 ~~a~~~l~~~~~~~~~~~R~L~~~i~~~  720 (758)
T 3pxi_A          693 DAAKAKVAEEGVDLEYGARPLRRAIQKH  720 (758)
T ss_dssp             HHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence            9999999875   568888888888754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.73  E-value=3.7e-18  Score=143.05  Aligned_cols=163  Identities=16%  Similarity=0.262  Sum_probs=106.3

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .|.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+.+...... ..+..+        
T Consensus        11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~-~~~~~~--------   81 (187)
T 2p65_A           11 DLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDS-LKGRKL--------   81 (187)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTT-TTTCEE--------
T ss_pred             HHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcch-hcCCeE--------
Confidence            58899999999999999999999999988776677999999999999999999998754221100 000000        


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHH
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRR  152 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~~~~Ll~  152 (365)
                      ..+     .......  ...........+.+.+..+..        ..++.+++|||++.+.         ....+.|..
T Consensus        82 ~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~  146 (187)
T 2p65_A           82 VSL-----DLSSLIA--GAKYRGDFEERLKSILKEVQD--------AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKP  146 (187)
T ss_dssp             EEE-----CHHHHHH--HCCSHHHHHHHHHHHHHHHHH--------TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHH
T ss_pred             EEE-----eHHHhhc--CCCchhHHHHHHHHHHHHHHh--------cCCceEEEEeCHHHhcccccccccchHHHHHHHH
Confidence            000     0000000  000000001123333333332        1245799999999886         445666666


Q ss_pred             HHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCC
Q 017844          153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPT  190 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~  190 (365)
                      .+++  .++.+|++++...     .+.+++++||..+.+++|+
T Consensus       147 ~~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~  187 (187)
T 2p65_A          147 MLAR--GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS  187 (187)
T ss_dssp             HHHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred             HHhc--CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence            6664  3677888888665     5789999999999998875

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.71  E-value=3.1e-16  Score=159.50  Aligned_cols=197  Identities=17%  Similarity=0.218  Sum_probs=133.9

Q ss_pred             CccccCHHHHHHHHHHHHcC--------CC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           13 DQVIVHQDIAQNLKKLVTEQ--------DC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      +.++|++++++.+..++...        +. .+++|+||+|||||++|+++++.+.   ...+.+++..+ ...      
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~---~~~~~i~~s~~-~~~------  527 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEY-MER------  527 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEGGGC-SSS------
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CCEEEEechhh-cch------
Confidence            35789999998888777531        12 2599999999999999999999772   22344444333 000      


Q ss_pred             ccccccccccceecCCCCcCccchhH-HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc----
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYV-VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS----  158 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~----  158 (365)
                           ......+..   ..+ +.... ...+...+..         ..+.|++|||++.+.++.++.|++.|++..    
T Consensus       528 -----~~~~~l~g~---~~g-~~g~~~~~~l~~~~~~---------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~  589 (758)
T 1r6b_X          528 -----HTVSRLIGA---PPG-YVGFDQGGLLTDAVIK---------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN  589 (758)
T ss_dssp             -----SCCSSSCCC---CSC-SHHHHHTTHHHHHHHH---------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET
T ss_pred             -----hhHhhhcCC---CCC-CcCccccchHHHHHHh---------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcC
Confidence                 000011111   111 11000 0111222221         234899999999999999999999999742    


Q ss_pred             -------CceeEEEEecCCC-------------------------cccHHHhccc-eeEEecCCCHHHHHHHHHHHHHHc
Q 017844          159 -------ASCRLILCCNSSS-------------------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKE  205 (365)
Q Consensus       159 -------~~~~~Il~t~~~~-------------------------~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~  205 (365)
                             .++.+|++||...                         .+.+++++|| .++.|++++.+++..++...+.+.
T Consensus       590 ~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~  669 (758)
T 1r6b_X          590 NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL  669 (758)
T ss_dssp             TTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHH
Confidence                   3566888888643                         5778999999 689999999999999998877632


Q ss_pred             ---------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 017844          206 ---------GLQLPSGFATRLAEKS---NRSLRRAILSFETCRV  237 (365)
Q Consensus       206 ---------~~~i~~~~~~~i~~~~---~g~lr~ai~~l~~~~~  237 (365)
                               .+.+++++++.+++.+   ++++|.+.+.++..+.
T Consensus       670 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~  713 (758)
T 1r6b_X          670 QVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK  713 (758)
T ss_dssp             HHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred             HHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence                     3468999999999865   5558888888776543

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.70  E-value=8.9e-16  Score=138.96  Aligned_cols=203  Identities=16%  Similarity=0.142  Sum_probs=129.2

Q ss_pred             CccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc
Q 017844           13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   90 (365)
                      ++++|+....+.+...+..  ....+++|+||+|||||++|++++..........+.++|..+   |     +   ... 
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~---~-----~---~l~-   69 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL---N-----E---SLL-   69 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC---C-----H---HHH-
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC---C-----h---HHH-
Confidence            4688988888777777654  333449999999999999999999865333333344443222   0     0   000 


Q ss_pred             cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------C
Q 017844           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------A  159 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~  159 (365)
                      ....+............ .....+..            ....+++|||++.++...+..|++.+++..           .
T Consensus        70 ~~~lfg~~~g~~tg~~~-~~~g~~~~------------a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~  136 (304)
T 1ojl_A           70 ESELFGHEKGAFTGADK-RREGRFVE------------ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISV  136 (304)
T ss_dssp             HHHHTCCCSSCCC---C-CCCCHHHH------------HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred             HHHhcCccccccCchhh-hhcCHHHh------------cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccC
Confidence            00000000000000000 00000111            112589999999999999999999998752           4


Q ss_pred             ceeEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc
Q 017844          160 SCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS  221 (365)
Q Consensus       160 ~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~~~----~~~---~~i~~~~~~~i~~~~  221 (365)
                      ++++|++||...       .+.+.+.+|+.  .+.++++.  .+++..++...+.    +.+   ..+++++++.+...+
T Consensus       137 ~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~  216 (304)
T 1ojl_A          137 DVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD  216 (304)
T ss_dssp             CCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred             CeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence            578888888762       35678889974  56677776  4666666655443    333   578999999999976


Q ss_pred             -CCCHHHHHHHHHHHHhcCC
Q 017844          222 -NRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       222 -~g~lr~ai~~l~~~~~~~~  240 (365)
                       .||+|++.+.++.++..+.
T Consensus       217 wpGnvReL~~~l~~~~~~~~  236 (304)
T 1ojl_A          217 WPGNIRELENAIERAVVLLT  236 (304)
T ss_dssp             CSSHHHHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHHhCC
Confidence             9999999999998876543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.70  E-value=1.1e-16  Score=149.55  Aligned_cols=194  Identities=18%  Similarity=0.217  Sum_probs=123.9

Q ss_pred             ccccCHHHHHHHHHHHH----c-------------------------C-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCC
Q 017844           14 QVIVHQDIAQNLKKLVT----E-------------------------Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGA   63 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~----~-------------------------~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~   63 (365)
                      .++||+.+++.+..++.    .                         . ..++++|+||||||||++|+++++.+..+  
T Consensus        22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~--   99 (376)
T 1um8_A           22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP--   99 (376)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC--
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCC--
Confidence            47899999998887772    1                         1 12349999999999999999999976221  


Q ss_pred             ccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC
Q 017844           64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS  143 (365)
Q Consensus        64 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~  143 (365)
                       .+.+++..+                ...   .+.    +......+...+..    ..... ......|++|||++.+.
T Consensus       100 -~~~~~~~~~----------------~~~---~~~----g~~~~~~~~~~~~~----~~~~~-~~~~~~vl~iDEi~~l~  150 (376)
T 1um8_A          100 -IAISDATSL----------------TEA---GYV----GEDVENILTRLLQA----SDWNV-QKAQKGIVFIDEIDKIS  150 (376)
T ss_dssp             -EEEEEGGGC----------------C---------------CTHHHHHHHHH----TTTCH-HHHTTSEEEEETGGGC-
T ss_pred             -EEEecchhh----------------hhc---CcC----CccHHHHHHHHHhh----ccchh-hhcCCeEEEEcCHHHHh
Confidence             122222111                000   000    11111112222221    10000 01234799999999998


Q ss_pred             HH--------------HHHHHHHHHhhhc---------------------CceeEEEEecC-------------------
Q 017844          144 RE--------------AQHSLRRTMEKYS---------------------ASCRLILCCNS-------------------  169 (365)
Q Consensus       144 ~~--------------~~~~Ll~~le~~~---------------------~~~~~Il~t~~-------------------  169 (365)
                      ..              .++.|++.|++..                     .++.+|++++.                   
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~  230 (376)
T 1um8_A          151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT  230 (376)
T ss_dssp             -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred             hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence            77              8999999999641                     34466666651                   


Q ss_pred             ----------------------CCcccHHHhccc-eeEEecCCCHHHHHHHHHH----HHH-------H--cCCCCCHHH
Q 017844          170 ----------------------SSKVTEAIRSRC-LNIRINSPTEEQIVKVLEF----IAK-------K--EGLQLPSGF  213 (365)
Q Consensus       170 ----------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~----~~~-------~--~~~~i~~~~  213 (365)
                                            ...+.+++.+|+ .++.|++++.+++..++..    ++.       .  .++.+++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  310 (376)
T 1um8_A          231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEA  310 (376)
T ss_dssp             CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHH
T ss_pred             chhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHH
Confidence                                  012568899999 7899999999999999862    221       1  235689999


Q ss_pred             HHHHHHHcC---CCHHHHHHHHHHHHhc
Q 017844          214 ATRLAEKSN---RSLRRAILSFETCRVQ  238 (365)
Q Consensus       214 ~~~i~~~~~---g~lr~ai~~l~~~~~~  238 (365)
                      ++.|++.+.   |++|.+.+.++.++..
T Consensus       311 ~~~l~~~~~~~~~~~R~L~~~le~~~~~  338 (376)
T 1um8_A          311 IKEIAQLALERKTGARGLRAIIEDFCLD  338 (376)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence            999999854   9999999999987653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.70  E-value=3.1e-18  Score=152.55  Aligned_cols=198  Identities=15%  Similarity=0.234  Sum_probs=128.7

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHH-----------cCCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVT-----------EQDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~-----------~~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~   72 (365)
                      .++.+.+|++++|++.+++.++..+.           ....+ +++|+||||||||++|+++++.+..+.   +.+++..
T Consensus         3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~v~~~~   79 (268)
T 2r62_A            3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF---FSMGGSS   79 (268)
T ss_dssp             CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC---CCCCSCT
T ss_pred             ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEechHH
Confidence            46778899999999988888887765           12333 399999999999999999999874322   1222211


Q ss_pred             ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-------
Q 017844           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-------  145 (365)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-------  145 (365)
                      +                     ..........    .++..+.....         ..+.|++|||+|.+...       
T Consensus        80 ~---------------------~~~~~~~~~~----~~~~~~~~a~~---------~~~~vl~iDEid~l~~~~~~~~~~  125 (268)
T 2r62_A           80 F---------------------IEMFVGLGAS----RVRDLFETAKK---------QAPSIIFIDEIDAIGKSRAAGGVV  125 (268)
T ss_dssp             T---------------------TTSCSSSCSS----SSSTTHHHHHH---------SCSCEEEESCGGGTTC--------
T ss_pred             H---------------------HHhhcchHHH----HHHHHHHHHHh---------cCCeEEEEeChhhhcccccccccC
Confidence            1                     0000000000    01122333222         13479999999988643       


Q ss_pred             --------HHHHHHHHHhhhc---CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844          146 --------AQHSLRRTMEKYS---ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (365)
Q Consensus       146 --------~~~~Ll~~le~~~---~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~  211 (365)
                              .++.|+..++...   ..+.+|+++|.+..+++++.+  |+ ..+.|++|+.+++.++++..+...+.. ++
T Consensus       126 ~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~  204 (268)
T 2r62_A          126 SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-ND  204 (268)
T ss_dssp             --CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SS
T ss_pred             CCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-Cc
Confidence                    2345666666542   236677788888888889988  65 479999999999999999887644332 22


Q ss_pred             HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC
Q 017844          212 GFATRLAEKSNR-SLRRAILSFETCRVQQY  240 (365)
Q Consensus       212 ~~~~~i~~~~~g-~lr~ai~~l~~~~~~~~  240 (365)
                      ..++.+++.+.| +.|++.++++.++..+.
T Consensus       205 ~~~~~la~~~~g~~g~dl~~l~~~a~~~a~  234 (268)
T 2r62_A          205 VNLQEVAKLTAGLAGADLANIINEAALLAG  234 (268)
T ss_dssp             CCTTTTTSSSCSSCHHHHHHHHHHHHHTTS
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            336667777776 45677778887766553

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.68  E-value=4.7e-16  Score=148.85  Aligned_cols=197  Identities=18%  Similarity=0.288  Sum_probs=129.0

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHc-----------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      |.++ .+.+|++++|+++++..+++.+..           .+.+. ++|+|||||||||+++++++.+.   .+.+.+++
T Consensus        22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---~~~i~i~g   97 (499)
T 2dhr_A           22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG   97 (499)
T ss_dssp             ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred             eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeh
Confidence            4444 677999999999998888776542           12333 99999999999999999999753   23333433


Q ss_pred             ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------
Q 017844           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------  144 (365)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------  144 (365)
                      ..+                     ...   ..+     .....+..+.+..     ....+.+++|||++.+..      
T Consensus        98 ~~~---------------------~~~---~~g-----~~~~~v~~lfq~a-----~~~~p~il~IDEId~l~~~r~~~~  143 (499)
T 2dhr_A           98 SDF---------------------VEM---FVG-----VGAARVRDLFETA-----KRHAPCIVFIDEIDAVGRKRGSGV  143 (499)
T ss_dssp             GGG---------------------TSS---CTT-----HHHHHHHHHTTTS-----SSSSSCEEEEECGGGTCCCSSSST
T ss_pred             hHH---------------------HHh---hhh-----hHHHHHHHHHHHH-----HhcCCCEEEEehHHHHHHhhccCc
Confidence            222                     000   001     0111222222111     112357999999987631      


Q ss_pred             --------HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844          145 --------EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (365)
Q Consensus       145 --------~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~  211 (365)
                              ...+.|+..|+...  ..+.++.++|.++.+++++.+++   ..+.++.|+.+++.++++.++.  +..+++
T Consensus       144 ~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~  221 (499)
T 2dhr_A          144 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAE  221 (499)
T ss_dssp             TTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCC
T ss_pred             CCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCCh
Confidence                    23345555555332  23556666777777888998854   3899999999999999987654  445554


Q ss_pred             HH-HHHHHHHcCCCH-HHHHHHHHHHHhcC
Q 017844          212 GF-ATRLAEKSNRSL-RRAILSFETCRVQQ  239 (365)
Q Consensus       212 ~~-~~~i~~~~~g~l-r~ai~~l~~~~~~~  239 (365)
                      ++ +..++..+.|+. |++.++++.++..+
T Consensus       222 dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A  251 (499)
T 2dhr_A          222 DVDLALLAKRTPGFVGADLENLLNEAALLA  251 (499)
T ss_dssp             SSTTHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            44 888999999987 88888888776553

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.68  E-value=3e-16  Score=150.48  Aligned_cols=195  Identities=17%  Similarity=0.230  Sum_probs=132.1

Q ss_pred             ccCCCCCCccccCHHHHHHHHHHHHc------------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844            6 KYRPKTLDQVIVHQDIAQNLKKLVTE------------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (365)
Q Consensus         6 k~rP~~~~~iig~~~~~~~l~~~l~~------------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~   72 (365)
                      .+++.+|++++|++.+++.++.++..            ...+ ++||+||||||||++|+++++++..   ..+.++|..
T Consensus       197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~---~fv~vn~~~  273 (489)
T 3hu3_A          197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPE  273 (489)
T ss_dssp             HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS---EEEEEEHHH
T ss_pred             ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC---CEEEEEchH
Confidence            45677899999999999999888753            1333 4999999999999999999987521   122232221


Q ss_pred             ceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------
Q 017844           73 WKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------  143 (365)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------  143 (365)
                      +                .         +.........++..+.....         ..+.+++|||+|.+.         
T Consensus       274 l----------------~---------~~~~g~~~~~~~~~f~~A~~---------~~p~iLfLDEId~l~~~~~~~~~~  319 (489)
T 3hu3_A          274 I----------------M---------SKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGE  319 (489)
T ss_dssp             H----------------H---------TSCTTHHHHHHHHHHHHHHH---------TCSEEEEEESHHHHCBCTTSCCCH
T ss_pred             h----------------h---------hhhcchhHHHHHHHHHHHHh---------cCCcEEEecchhhhccccccccch
Confidence            1                0         00011111123344444332         234799999997654         


Q ss_pred             --HHHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017844          144 --REAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (365)
Q Consensus       144 --~~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~  216 (365)
                        ...++.|+..|+..  ..++.+|.+||.++.+++++++  |+. .+.|+.|+.++..++|+.++...... .+..+..
T Consensus       320 ~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~  398 (489)
T 3hu3_A          320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQ  398 (489)
T ss_dssp             HHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHH
T ss_pred             HHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHH
Confidence              25678899999864  3467888889998889999998  553 79999999999999999887655443 2334677


Q ss_pred             HHHHcCCC-HHHHHHHHHHHHhc
Q 017844          217 LAEKSNRS-LRRAILSFETCRVQ  238 (365)
Q Consensus       217 i~~~~~g~-lr~ai~~l~~~~~~  238 (365)
                      ++..+.|. .+...++++.++..
T Consensus       399 la~~t~g~s~~dL~~L~~~A~~~  421 (489)
T 3hu3_A          399 VANETHGHVGADLAALCSEAALQ  421 (489)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHccCCcHHHHHHHHHHHHHH
Confidence            88887774 44444455554433

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.68  E-value=1.5e-16  Score=163.43  Aligned_cols=201  Identities=16%  Similarity=0.283  Sum_probs=136.7

Q ss_pred             CccccCHHHHHHHHHHHHcCC--------C-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee
Q 017844           13 DQVIVHQDIAQNLKKLVTEQD--------C-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID   83 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~~--------~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~   83 (365)
                      ++++|++.+++.+...+....        . .+++|+||+|||||++|+++++.+.+.....+.+++..+ .       +
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~-~-------~  629 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY-M-------E  629 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC-C-------S
T ss_pred             cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc-c-------c
Confidence            467999999988888876421        1 249999999999999999999988776555556665443 0       0


Q ss_pred             ccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----
Q 017844           84 LELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----  158 (365)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----  158 (365)
                      .    ......+...+...+...   ...+...+.. .        .+.|++|||++.++++.++.|++.|++..     
T Consensus       630 ~----~~~s~l~g~~~~~~G~~~---~g~l~~~~~~-~--------~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~  693 (854)
T 1qvr_A          630 K----HAVSRLIGAPPGYVGYEE---GGQLTEAVRR-R--------PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH  693 (854)
T ss_dssp             S----GGGGGC-----------------CHHHHHHH-C--------SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSS
T ss_pred             h----hHHHHHcCCCCCCcCccc---cchHHHHHHh-C--------CCeEEEEecccccCHHHHHHHHHHhccCceECCC
Confidence            0    000000110010011111   0112222222 1        24799999999999999999999999753     


Q ss_pred             ------CceeEEEEecCC--------------------------CcccHHHhccc-eeEEecCCCHHHHHHHHHHHHHH-
Q 017844          159 ------ASCRLILCCNSS--------------------------SKVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAKK-  204 (365)
Q Consensus       159 ------~~~~~Il~t~~~--------------------------~~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~-  204 (365)
                            .++.+|++||..                          ..+.+.+.+|| .++.|.|++.+++..++...+.+ 
T Consensus       694 g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~  773 (854)
T 1qvr_A          694 GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL  773 (854)
T ss_dssp             SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence                  355688888752                          13567889999 68899999999999998877653 


Q ss_pred             ------c--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 017844          205 ------E--GLQLPSGFATRLAEKS---NRSLRRAILSFETCRV  237 (365)
Q Consensus       205 ------~--~~~i~~~~~~~i~~~~---~g~lr~ai~~l~~~~~  237 (365)
                            .  .+.+++++++.|++.+   .|++|.+.+.++.+..
T Consensus       774 ~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~  817 (854)
T 1qvr_A          774 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE  817 (854)
T ss_dssp             HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred             HHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence                  1  2468999999999965   4999999999887543

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.68  E-value=5.5e-16  Score=153.29  Aligned_cols=233  Identities=18%  Similarity=0.186  Sum_probs=141.1

Q ss_pred             ccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce-------ec
Q 017844            4 VDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK-------ID   76 (365)
Q Consensus         4 ~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~-------~~   76 (365)
                      -.+|||++|++++|++.+++.+...+..+.  +++|+||||+||||+++++++.+.+...+.+.+.+....       ..
T Consensus        32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~  109 (604)
T 3k1j_A           32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV  109 (604)
T ss_dssp             GSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred             cccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence            468999999999999999999999998885  499999999999999999999665444344433332210       00


Q ss_pred             CCCccee-------------------ccccccccccceec-CCCCcC----ccchhHHHHHHHHHHhc----CCC-----
Q 017844           77 AGSRNID-------------------LELTTLSSANHVEL-SPSDAG----FQDRYVVQEVIKEMAKN----RPI-----  123 (365)
Q Consensus        77 ~~~~~~~-------------------~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~----~~~-----  123 (365)
                      |.+....                   ..+........+.+ .....+    ........+++..+...    ...     
T Consensus       110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~  189 (604)
T 3k1j_A          110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH  189 (604)
T ss_dssp             ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred             ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence            0000000                   00000000000000 000000    00000111221110000    000     


Q ss_pred             -----CCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------------------cCceeEEEEecCC--CcccH
Q 017844          124 -----DTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------------------SASCRLILCCNSS--SKVTE  175 (365)
Q Consensus       124 -----~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------------------~~~~~~Il~t~~~--~~l~~  175 (365)
                           +.....+..+++|||++.|++..++.|++.|++.                     +.++++|+++|..  ..+.+
T Consensus       190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~  269 (604)
T 3k1j_A          190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP  269 (604)
T ss_dssp             GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred             ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence                 0000123469999999999999999999999842                     2356788888876  47899


Q ss_pred             HHhccce----eEEecC---CCHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---CC-------CHHHHHHHHH
Q 017844          176 AIRSRCL----NIRINS---PTEEQIVKVLEFIAKKE-----GLQLPSGFATRLAEKS---NR-------SLRRAILSFE  233 (365)
Q Consensus       176 ~l~sR~~----~i~~~~---~~~~~~~~iL~~~~~~~-----~~~i~~~~~~~i~~~~---~g-------~lr~ai~~l~  233 (365)
                      ++++||.    .+.|+.   -..+.+..++..+++..     ...++++++..+++.+   .|       ++|.+.++++
T Consensus       270 ~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr  349 (604)
T 3k1j_A          270 ALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR  349 (604)
T ss_dssp             HHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHH
T ss_pred             HHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHH
Confidence            9999994    566543   25566777776555432     2578999999999854   56       6999999998


Q ss_pred             HHHhc
Q 017844          234 TCRVQ  238 (365)
Q Consensus       234 ~~~~~  238 (365)
                      .+...
T Consensus       350 ~A~~~  354 (604)
T 3k1j_A          350 AAGDI  354 (604)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.67  E-value=7.9e-16  Score=137.27  Aligned_cols=184  Identities=15%  Similarity=0.235  Sum_probs=113.8

Q ss_pred             CccccCHHHHHHHHH-------HHHc--CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcce
Q 017844           13 DQVIVHQDIAQNLKK-------LVTE--QDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNI   82 (365)
Q Consensus        13 ~~iig~~~~~~~l~~-------~l~~--~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~   82 (365)
                      ..++|+....+.+..       .+..  ... ++++|+||+|||||++|+++++.+.++   .+.+++.           
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~---~~~i~~~-----------   98 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKICSP-----------   98 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEECG-----------
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---EEEEeCH-----------
Confidence            457777655443333       3431  222 349999999999999999999975322   1111110           


Q ss_pred             eccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC----------CHHHHHHHHH
Q 017844           83 DLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL----------SREAQHSLRR  152 (365)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L----------~~~~~~~Ll~  152 (365)
                                .  .+.. .........++..+....         ..++.+++|||++.+          ....++.|..
T Consensus        99 ----------~--~~~g-~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~  156 (272)
T 1d2n_A           99 ----------D--KMIG-FSETAKCQAMKKIFDDAY---------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLV  156 (272)
T ss_dssp             ----------G--GCTT-CCHHHHHHHHHHHHHHHH---------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHH
T ss_pred             ----------H--HhcC-CchHHHHHHHHHHHHHHH---------hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHH
Confidence                      0  0000 000000012333333322         134589999999876          4455566666


Q ss_pred             HHhh---hcCceeEEEEecCCCcccH-HHhccc-eeEEecCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC---
Q 017844          153 TMEK---YSASCRLILCCNSSSKVTE-AIRSRC-LNIRINSPTE-EQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR---  223 (365)
Q Consensus       153 ~le~---~~~~~~~Il~t~~~~~l~~-~l~sR~-~~i~~~~~~~-~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g---  223 (365)
                      .++.   ....+.+|.+||.++.+.+ .+++|+ ..+.+++++. +++..++.+.     ..++++.+..+++.+.|   
T Consensus       157 ~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~-----~~~~~~~~~~l~~~~~g~~~  231 (272)
T 1d2n_A          157 LLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL-----GNFKDKERTTIAQQVKGKKV  231 (272)
T ss_dssp             HTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEE
T ss_pred             HhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc-----CCCCHHHHHHHHHHhcCCCc
Confidence            6654   2234556666766665655 678885 6889988877 6666666542     24689999999999988   


Q ss_pred             --CHHHHHHHHHHHHh
Q 017844          224 --SLRRAILSFETCRV  237 (365)
Q Consensus       224 --~lr~ai~~l~~~~~  237 (365)
                        ++|+++++++.+..
T Consensus       232 ~g~ir~l~~~l~~a~~  247 (272)
T 1d2n_A          232 WIGIKKLLMLIEMSLQ  247 (272)
T ss_dssp             EECHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHhh
Confidence              99999999998854

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.65  E-value=2e-15  Score=133.30  Aligned_cols=197  Identities=18%  Similarity=0.281  Sum_probs=124.5

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      +...+++.+|++++|+++++..++.....           -..+ .++|+||||+||||+++++++.+.   .+.+.+++
T Consensus         6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~   82 (254)
T 1ixz_A            6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG   82 (254)
T ss_dssp             --CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred             cccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeeH
Confidence            34567778999999999888777665431           1223 399999999999999999999653   22333333


Q ss_pred             ccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-------
Q 017844           71 KTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-------  143 (365)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-------  143 (365)
                      ..+                     ....   .+ .....+...+....         ...+.++++||++.+.       
T Consensus        83 ~~~---------------------~~~~---~~-~~~~~i~~~~~~~~---------~~~~~i~~~Deid~l~~~~~~~~  128 (254)
T 1ixz_A           83 SDF---------------------VEMF---VG-VGAARVRDLFETAK---------RHAPCIVFIDEIDAVGRKRGSGV  128 (254)
T ss_dssp             HHH---------------------HHSC---TT-HHHHHHHHHHHHHT---------TSSSEEEEEETHHHHHC------
T ss_pred             HHH---------------------HHHH---hh-HHHHHHHHHHHHHH---------hcCCeEEEehhhhhhhcccCccc
Confidence            211                     0000   00 00111222222221         1234799999997552       


Q ss_pred             ----H---HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 017844          144 ----R---EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPS  211 (365)
Q Consensus       144 ----~---~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~  211 (365)
                          .   ...+.++..++...  ....++.+++.++.+++++.+  |+ ..+.++.|+.++..++++..+.  +..+++
T Consensus       129 ~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~  206 (254)
T 1ixz_A          129 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAE  206 (254)
T ss_dssp             ---CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCT
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCc
Confidence                1   12344555554322  234566677788888999988  44 3799999999999999987764  344444


Q ss_pred             HH-HHHHHHHcCCCH-HHHHHHHHHHHhc
Q 017844          212 GF-ATRLAEKSNRSL-RRAILSFETCRVQ  238 (365)
Q Consensus       212 ~~-~~~i~~~~~g~l-r~ai~~l~~~~~~  238 (365)
                      ++ +..++..+.|.. |++.++++.++..
T Consensus       207 ~~~~~~la~~~~G~~~~dl~~~~~~a~~~  235 (254)
T 1ixz_A          207 DVDLALLAKRTPGFVGADLENLLNEAALL  235 (254)
T ss_dssp             TCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            43 888999998865 7777887766543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.62  E-value=2.3e-14  Score=128.13  Aligned_cols=193  Identities=18%  Similarity=0.288  Sum_probs=122.0

Q ss_pred             cCCCCCCccccCHHHHHHHHHHHHc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844            7 YRPKTLDQVIVHQDIAQNLKKLVTE-----------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (365)
Q Consensus         7 ~rP~~~~~iig~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~   74 (365)
                      ..+.+|++++|+++++..++.....           -..+ +++|+||||+||||+++++++.+.   .+.+.+++..+ 
T Consensus        34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~-  109 (278)
T 1iy2_A           34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDF-  109 (278)
T ss_dssp             CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHH-
T ss_pred             CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHH-
Confidence            3567899999999888777765531           1223 399999999999999999999653   22333333221 


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC-----------
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS-----------  143 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~-----------  143 (365)
                                          ....   .+ .....+...+.....         ..+.++++||++.+.           
T Consensus       110 --------------------~~~~---~~-~~~~~i~~~~~~~~~---------~~~~i~~iDeid~l~~~~~~~~~~~~  156 (278)
T 1iy2_A          110 --------------------VEMF---VG-VGAARVRDLFETAKR---------HAPCIVFIDEIDAVGRKRGSGVGGGN  156 (278)
T ss_dssp             --------------------HHST---TT-HHHHHHHHHHHHHHT---------SCSEEEEEETHHHHHCC--------C
T ss_pred             --------------------HHHH---hh-HHHHHHHHHHHHHHh---------cCCcEEehhhhHhhhcccccccCCcc
Confidence                                0000   00 001112233333221         134799999997541           


Q ss_pred             HHHHHHHHHHHhhh---c--CceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-H
Q 017844          144 REAQHSLRRTMEKY---S--ASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGF-A  214 (365)
Q Consensus       144 ~~~~~~Ll~~le~~---~--~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~-~  214 (365)
                      ......+...+.+.   .  ....++.+++.++.+++++.+  |+ ..+.|+.|+.++..++++..+.  +..+++++ +
T Consensus       157 ~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~  234 (278)
T 1iy2_A          157 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDL  234 (278)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCH
T ss_pred             hHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCH
Confidence            12233333333332   1  234566678888889999988  44 3799999999999999997764  34444443 7


Q ss_pred             HHHHHHcCCCH-HHHHHHHHHHHhc
Q 017844          215 TRLAEKSNRSL-RRAILSFETCRVQ  238 (365)
Q Consensus       215 ~~i~~~~~g~l-r~ai~~l~~~~~~  238 (365)
                      ..++..+.|+. |++.++++.++..
T Consensus       235 ~~la~~~~G~~~~dl~~l~~~a~~~  259 (278)
T 1iy2_A          235 ALLAKRTPGFVGADLENLLNEAALL  259 (278)
T ss_dssp             HHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            88999999977 6677777766543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.60  E-value=4.4e-15  Score=148.81  Aligned_cols=176  Identities=17%  Similarity=0.259  Sum_probs=119.4

Q ss_pred             CCCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      .+|+++.|.+++++.|++++.-           | ..|. +|||||||||||++|+++|+++..+   .+.+++..+   
T Consensus       201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~---~~~v~~~~l---  274 (806)
T 3cf2_A          201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPEI---  274 (806)
T ss_dssp             CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE---EEEEEHHHH---
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe---EEEEEhHHh---
Confidence            5799999999888888887631           2 2233 9999999999999999999976321   122222111   


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------H
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------E  145 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----------~  145 (365)
                                           .. .........+++.+....         ...+.||+|||+|.+.+           .
T Consensus       275 ---------------------~s-k~~gese~~lr~lF~~A~---------~~~PsIIfIDEiDal~~~r~~~~~~~~~r  323 (806)
T 3cf2_A          275 ---------------------MS-KLAGESESNLRKAFEEAE---------KNAPAIIFIDELDAIAPKREKTHGEVERR  323 (806)
T ss_dssp             ---------------------HS-SCTTHHHHHHHHHHHHHT---------TSCSEEEEEESGGGTCCTTTTCCCTTHHH
T ss_pred             ---------------------hc-ccchHHHHHHHHHHHHHH---------HcCCeEEEEehhcccccccCCCCChHHHH
Confidence                                 00 111111223445554432         23458999999998842           2


Q ss_pred             HHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 017844          146 AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK  220 (365)
Q Consensus       146 ~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~  220 (365)
                      ..+.|+..|+...  .++.+|.+||+++.+++++++  |+. .|+++.|+.+++.++|+.++.+.... ++..+..+|..
T Consensus       324 iv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~  402 (806)
T 3cf2_A          324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE  402 (806)
T ss_dssp             HHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHH
T ss_pred             HHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHh
Confidence            4556777776542  357788899999999999998  774 89999999999999998776543222 23347778887


Q ss_pred             cCC
Q 017844          221 SNR  223 (365)
Q Consensus       221 ~~g  223 (365)
                      +.|
T Consensus       403 T~G  405 (806)
T 3cf2_A          403 THG  405 (806)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            765

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.58  E-value=1.2e-14  Score=137.20  Aligned_cols=214  Identities=14%  Similarity=0.210  Sum_probs=130.0

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHH-Hc---C---CCCeEEE--ECCCCCcHHHHHHHHHHHhcCC------CCccceec
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLV-TE---Q---DCPHLLF--YGPPGSGKKTLIMALLRQVFGP------GAEKVKVE   69 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l-~~---~---~~~~lll--~Gp~G~GKTtla~~la~~l~~~------~~~~i~~~   69 (365)
                      .+|.|   ++++|.+..++.+..++ ..   +   ...+++|  +||+|+|||++++.+++.+...      ....++++
T Consensus        17 ~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           17 ENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             TTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            34544   67899988888887777 42   3   3344888  9999999999999999876431      11222333


Q ss_pred             cccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC------
Q 017844           70 NKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS------  143 (365)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~------  143 (365)
                      +...     .....+. ..+.  ..+.......+.........+...+..        .+++.+++|||++.+.      
T Consensus        94 ~~~~-----~~~~~~~-~~l~--~~l~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~llvlDe~~~l~~~~~~~  157 (412)
T 1w5s_A           94 AFNA-----PNLYTIL-SLIV--RQTGYPIQVRGAPALDILKALVDNLYV--------ENHYLLVILDEFQSMLSSPRIA  157 (412)
T ss_dssp             GGGC-----CSHHHHH-HHHH--HHHTCCCCCTTCCHHHHHHHHHHHHHH--------HTCEEEEEEESTHHHHSCTTSC
T ss_pred             CCCC-----CCHHHHH-HHHH--HHhCCCCCCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEeCHHHHhhccCcc
Confidence            2111     0000000 0000  000000000011111111112222211        1345799999998874      


Q ss_pred             HHHHHHHHHHHhhhc-----CceeEEEEecCCC---ccc---HHHhccc-eeEEecCCCHHHHHHHHHHHHHHcC--CCC
Q 017844          144 REAQHSLRRTMEKYS-----ASCRLILCCNSSS---KVT---EAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEG--LQL  209 (365)
Q Consensus       144 ~~~~~~Ll~~le~~~-----~~~~~Il~t~~~~---~l~---~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~--~~i  209 (365)
                      .+....+++.+++.+     .++.+|++++.+.   .+.   +.+.+++ ..+.|++++.+++.+++...+...+  ..+
T Consensus       158 ~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~  237 (412)
T 1w5s_A          158 AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW  237 (412)
T ss_dssp             HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC
T ss_pred             hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC
Confidence            356666777777654     4567888887654   233   5566665 3599999999999999988776533  357


Q ss_pred             CHHHHHHHHHHcC------CCHHHHHHHHHHHHh
Q 017844          210 PSGFATRLAEKSN------RSLRRAILSFETCRV  237 (365)
Q Consensus       210 ~~~~~~~i~~~~~------g~lr~ai~~l~~~~~  237 (365)
                      +++++..+++.++      |++|.++.+++.+..
T Consensus       238 ~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~  271 (412)
T 1w5s_A          238 EPRHLELISDVYGEDKGGDGSARRAIVALKMACE  271 (412)
T ss_dssp             CHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence            8999999999999      999999999886543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.57  E-value=7.1e-15  Score=136.62  Aligned_cols=193  Identities=21%  Similarity=0.266  Sum_probs=121.3

Q ss_pred             cccCHHHHHHHHHHHH-------------cC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844           15 VIVHQDIAQNLKKLVT-------------EQ--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus        15 iig~~~~~~~l~~~l~-------------~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      ++|++.+++.+..++.             ..  ...+++|+||||||||++|+++++.+..+   .+.+++..+      
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~---~~~~~~~~l------   87 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVP---FTMADATTL------   87 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHHHH------
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---EEEechHHh------
Confidence            5899999998888873             11  22349999999999999999999976221   111222111      


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH--------------
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------------  145 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~--------------  145 (365)
                                        .....   ........+..+........ ....+.|++|||++.+...              
T Consensus        88 ------------------~~~~~---~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~  145 (363)
T 3hws_A           88 ------------------TEAGY---VGEDVENIIQKLLQKCDYDV-QKAQRGIVYIDQIDKISRKSDNPSITRDVSGEG  145 (363)
T ss_dssp             ------------------TTCHH---HHHHHTHHHHHHHHHTTTCH-HHHHHCEEEEECHHHHCCCSSCC---CHHHHHH
T ss_pred             ------------------ccccc---ccccHHHHHHHHHHHhhhhH-HhcCCcEEEEeChhhhcccccccccccccchHH
Confidence                              00000   00001111222211111000 0123469999999988755              


Q ss_pred             HHHHHHHHHhhh---------------------cCceeEEEEecCC----------Cc----------------------
Q 017844          146 AQHSLRRTMEKY---------------------SASCRLILCCNSS----------SK----------------------  172 (365)
Q Consensus       146 ~~~~Ll~~le~~---------------------~~~~~~Il~t~~~----------~~----------------------  172 (365)
                      .++.|++.|+..                     ..+..||++++..          .+                      
T Consensus       146 ~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l  225 (363)
T 3hws_A          146 VQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGEL  225 (363)
T ss_dssp             HHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHH
T ss_pred             HHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHH
Confidence            899999999821                     1233455555532          11                      


Q ss_pred             -------------ccHHHhccce-eEEecCCCHHHHHHHHHH----HHH-------HcC--CCCCHHHHHHHHHH---cC
Q 017844          173 -------------VTEAIRSRCL-NIRINSPTEEQIVKVLEF----IAK-------KEG--LQLPSGFATRLAEK---SN  222 (365)
Q Consensus       173 -------------l~~~l~sR~~-~i~~~~~~~~~~~~iL~~----~~~-------~~~--~~i~~~~~~~i~~~---~~  222 (365)
                                   +.+.+.+|+. ++.|.+|+.+++.+++..    .+.       ..+  +.+++++++.|++.   .+
T Consensus       226 ~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~  305 (363)
T 3hws_A          226 LAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARK  305 (363)
T ss_dssp             HHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCc
Confidence                         6788999996 566999999999888875    222       123  35899999999964   57


Q ss_pred             CCHHHHHHHHHHHHhc
Q 017844          223 RSLRRAILSFETCRVQ  238 (365)
Q Consensus       223 g~lr~ai~~l~~~~~~  238 (365)
                      ++.|.+.+.++.+...
T Consensus       306 ~gaR~L~~~ie~~~~~  321 (363)
T 3hws_A          306 TGARGLRSIVEAALLD  321 (363)
T ss_dssp             CTTTTHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHH
Confidence            7889999988876654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.55  E-value=2.3e-13  Score=122.52  Aligned_cols=153  Identities=16%  Similarity=0.191  Sum_probs=92.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (365)
                      ++|+||||||||++|+++|+++..+   .+.+++..+                     .   . .........+++.+..
T Consensus        39 lLl~GppGtGKT~la~aiA~~l~~~---~i~v~~~~l---------------------~---~-~~~g~~~~~i~~~f~~   90 (293)
T 3t15_A           39 LGIWGGKGQGKSFQCELVFRKMGIN---PIMMSAGEL---------------------E---S-GNAGEPAKLIRQRYRE   90 (293)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHTCC---CEEEEHHHH---------------------H---C-C---HHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC---EEEEeHHHh---------------------h---h-ccCchhHHHHHHHHHH
Confidence            9999999999999999999987321   222222111                     0   0 0001111223344443


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCCCCH-------------HHHHHHHHHHhh-------------hcCceeEEEEecCC
Q 017844          117 MAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------EAQHSLRRTMEK-------------YSASCRLILCCNSS  170 (365)
Q Consensus       117 ~~~~~~~~~~~~~~~~vliiDE~~~L~~-------------~~~~~Ll~~le~-------------~~~~~~~Il~t~~~  170 (365)
                      ......     ...+.|++|||+|.+.+             ..++.|+..|+.             ...++.+|++||.+
T Consensus        91 a~~~~~-----~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~  165 (293)
T 3t15_A           91 AAEIIR-----KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF  165 (293)
T ss_dssp             HHHHHT-----TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC
T ss_pred             HHHHHh-----cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc
Confidence            321111     23457999999988754             244788888862             22467899999999


Q ss_pred             CcccHHHhc--cceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Q 017844          171 SKVTEAIRS--RCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN-RSL  225 (365)
Q Consensus       171 ~~l~~~l~s--R~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~-g~l  225 (365)
                      +.+++++++  |+..+-+ .|+.++..++++.++...++  +.+.+..+..... .++
T Consensus       166 ~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l  220 (293)
T 3t15_A          166 STLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSI  220 (293)
T ss_dssp             CC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCH
T ss_pred             ccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccH
Confidence            999999986  6653333 46999999999988876654  4666666666444 444

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.54  E-value=9.1e-15  Score=146.55  Aligned_cols=184  Identities=21%  Similarity=0.243  Sum_probs=109.9

Q ss_pred             CCCCccccCHHHHHHHHHHHHc-----------CC-CCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTE-----------QD-CPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID   76 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~-----------~~-~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~   76 (365)
                      .+|+++.|.+++++.|++.+..           |. .+. +|||||||||||.+|+++|.++..+   .+.+.+      
T Consensus       474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~---f~~v~~------  544 (806)
T 3cf2_A          474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKG------  544 (806)
T ss_dssp             CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE---EEECCH------
T ss_pred             CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc---eEEecc------
Confidence            4789999999999999887641           22 222 9999999999999999999975221   111111      


Q ss_pred             CCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-----------
Q 017844           77 AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------  145 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-----------  145 (365)
                                     ...+   . .+.......+++++......         .+.||+|||+|.+...           
T Consensus       545 ---------------~~l~---s-~~vGese~~vr~lF~~Ar~~---------~P~IifiDEiDsl~~~R~~~~~~~~~~  596 (806)
T 3cf2_A          545 ---------------PELL---T-MWFGESEANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIGDGGGA  596 (806)
T ss_dssp             ---------------HHHH---T-TTCSSCHHHHHHHHHHHHTT---------CSEEEECSCGGGCC-------------
T ss_pred             ---------------chhh---c-cccchHHHHHHHHHHHHHHc---------CCceeechhhhHHhhccCCCCCCCchH
Confidence                           1001   0 11112233566777665433         3479999999988421           


Q ss_pred             ---HHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 017844          146 ---AQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL  217 (365)
Q Consensus       146 ---~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i  217 (365)
                         ..+.||..|+...  .++.+|.+||.++.+++++++  |+. .++|+.|+.+++.++++.++++..+. ++..++.|
T Consensus       597 ~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~l  675 (806)
T 3cf2_A          597 ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFL  675 (806)
T ss_dssp             -CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC------
T ss_pred             HHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHH
Confidence               3466788887543  346677789999999999998  884 89999999999999998777554332 22335666


Q ss_pred             HHHc----CCCHHHHHHH
Q 017844          218 AEKS----NRSLRRAILS  231 (365)
Q Consensus       218 ~~~~----~g~lr~ai~~  231 (365)
                      ++.+    +.|+..+.+.
T Consensus       676 a~~t~g~SGadi~~l~~~  693 (806)
T 3cf2_A          676 AKMTNGFSGADLTEICQR  693 (806)
T ss_dssp             ----------CHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHH
Confidence            6654    4466555443

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.52  E-value=6.3e-14  Score=134.33  Aligned_cols=196  Identities=12%  Similarity=0.106  Sum_probs=120.1

Q ss_pred             CccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccc
Q 017844           13 DQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSA   92 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (365)
                      ..++|++++++.+...+..+.  |++|+||||||||++|+++++.+.... ......+. +               .+..
T Consensus        22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~~~-~f~~~~~~-~---------------~t~~   82 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTR-F---------------STPE   82 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSSCC-EEEEECCT-T---------------CCHH
T ss_pred             hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhhhh-HHHHHHHh-c---------------CCHH
Confidence            357899999998888877664  599999999999999999998652211 00111110 0               0000


Q ss_pred             cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---------CceeE
Q 017844           93 NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---------ASCRL  163 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---------~~~~~  163 (365)
                      ..+...    ....   ... ...+.....-   ....+.|++|||++.+++..++.|+..|++..         ....|
T Consensus        83 dL~G~~----~~~~---~~~-~g~~~~~~~g---~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~  151 (500)
T 3nbx_X           83 EVFGPL----SIQA---LKD-EGRYERLTSG---YLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRL  151 (500)
T ss_dssp             HHHCCB----C--------------CBCCTT---SGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCE
T ss_pred             HhcCcc----cHHH---Hhh-chhHHhhhcc---CCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhh
Confidence            000000    0000   000 0001000000   00134699999999999999999999998531         12234


Q ss_pred             -EEEecCCCc---ccHHHhccce-eEEecCCCH-HHHHHHHHHHH-----------------------HHcCCCCCHHHH
Q 017844          164 -ILCCNSSSK---VTEAIRSRCL-NIRINSPTE-EQIVKVLEFIA-----------------------KKEGLQLPSGFA  214 (365)
Q Consensus       164 -Il~t~~~~~---l~~~l~sR~~-~i~~~~~~~-~~~~~iL~~~~-----------------------~~~~~~i~~~~~  214 (365)
                       |++||....   ..+++.+|+. .+.+++|+. ++...++....                       ...++.++++++
T Consensus       152 iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~  231 (500)
T 3nbx_X          152 LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVF  231 (500)
T ss_dssp             EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHH
T ss_pred             hhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHH
Confidence             667765432   5569999985 588899987 56677776532                       123677899999


Q ss_pred             HHHHHHc----------CCCHHHHHHHHHHHHhc
Q 017844          215 TRLAEKS----------NRSLRRAILSFETCRVQ  238 (365)
Q Consensus       215 ~~i~~~~----------~g~lr~ai~~l~~~~~~  238 (365)
                      +++++..          +.+.|.++.++..+.+.
T Consensus       232 e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~  265 (500)
T 3nbx_X          232 ELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQAS  265 (500)
T ss_dssp             HHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHH
Confidence            9998865          55889988877654433

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.51  E-value=6.1e-14  Score=116.98  Aligned_cols=134  Identities=19%  Similarity=0.228  Sum_probs=82.4

Q ss_pred             ccccCCCCCCcccc----CHHHHHHHHHHHHcCC---CCeEEEECCCCCcHHHHHHHHHHHhcC-CCCccceecccccee
Q 017844            4 VDKYRPKTLDQVIV----HQDIAQNLKKLVTEQD---CPHLLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKVENKTWKI   75 (365)
Q Consensus         4 ~~k~rP~~~~~iig----~~~~~~~l~~~l~~~~---~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~i~~~~~~~~~   75 (365)
                      +++|++.+|+++++    ++.+++.++.++..-.   ...++|+||+|+||||+++++++.+.. .....++++...+  
T Consensus         1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~--   78 (180)
T 3ec2_A            1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL--   78 (180)
T ss_dssp             CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH--
T ss_pred             CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH--
Confidence            57999999999986    4566777777776532   234999999999999999999997631 1111111111000  


Q ss_pred             cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCC--CCCHHHHHHHHHH
Q 017844           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVD--KLSREAQHSLRRT  153 (365)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~--~L~~~~~~~Ll~~  153 (365)
                                         ............   ..+.+..+           .++++++|||++  .+++..+..|..+
T Consensus        79 -------------------~~~~~~~~~~~~---~~~~~~~~-----------~~~~llilDE~~~~~~~~~~~~~l~~l  125 (180)
T 3ec2_A           79 -------------------IFRLKHLMDEGK---DTKFLKTV-----------LNSPVLVLDDLGSERLSDWQRELISYI  125 (180)
T ss_dssp             -------------------HHHHHHHHHHTC---CSHHHHHH-----------HTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred             -------------------HHHHHHHhcCch---HHHHHHHh-----------cCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence                               000000000000   00111111           135799999997  6788888888888


Q ss_pred             Hhhhc-CceeEEEEecCCCc
Q 017844          154 MEKYS-ASCRLILCCNSSSK  172 (365)
Q Consensus       154 le~~~-~~~~~Il~t~~~~~  172 (365)
                      +++.. .+..+|++||....
T Consensus       126 l~~~~~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A          126 ITYRYNNLKSTIITTNYSLQ  145 (180)
T ss_dssp             HHHHHHTTCEEEEECCCCSC
T ss_pred             HHHHHHcCCCEEEEcCCChh
Confidence            87653 46778888887754

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.51  E-value=3.4e-13  Score=126.60  Aligned_cols=108  Identities=17%  Similarity=0.254  Sum_probs=81.0

Q ss_pred             ceEEEEeCCCCCCH------------HHHHHHHHHHhhh----------cCceeEEEEe----cCCCcccHHHhcccee-
Q 017844          131 FKVLVLNEVDKLSR------------EAQHSLRRTMEKY----------SASCRLILCC----NSSSKVTEAIRSRCLN-  183 (365)
Q Consensus       131 ~~vliiDE~~~L~~------------~~~~~Ll~~le~~----------~~~~~~Il~t----~~~~~l~~~l~sR~~~-  183 (365)
                      ..++++||+|.+..            ..|++||+.+|..          ..++.||+++    .++..+.|.+++|+.+ 
T Consensus       251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~  330 (444)
T 1g41_A          251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR  330 (444)
T ss_dssp             HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred             CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence            45899999998842            2678999999852          2355677776    2455677999999975 


Q ss_pred             EEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHH--------cCCCHHHHHHHHHHHHhc
Q 017844          184 IRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEK--------SNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       184 i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~--------~~g~lr~ai~~l~~~~~~  238 (365)
                      +.|++++.+++.+++..           .+..+|+  .++++++..|++.        -++..|.+.+.++.++..
T Consensus       331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~  406 (444)
T 1g41_A          331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDK  406 (444)
T ss_dssp             EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHH
T ss_pred             eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHH
Confidence            99999999999999941           1222344  6899999999985        357888888888876543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.50  E-value=1.8e-13  Score=110.00  Aligned_cols=132  Identities=19%  Similarity=0.159  Sum_probs=87.3

Q ss_pred             ccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc
Q 017844           14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   91 (365)
                      +++|+...++.+...++.  ....+++|+||+|||||++|++++..........+ +++...                  
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~------------------   62 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP------------------   62 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT------------------
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC------------------
Confidence            578998888888777653  33345999999999999999999885322221112 222111                  


Q ss_pred             ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844           92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                                 ....  .....+...            ...+++|||++.++...+..|+..|+..+.++++|++||...
T Consensus        63 -----------~~~~--~~~~~~~~a------------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~  117 (145)
T 3n70_A           63 -----------DNAP--QLNDFIALA------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSL  117 (145)
T ss_dssp             -----------TTSS--CHHHHHHHH------------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCH
T ss_pred             -----------Ccch--hhhcHHHHc------------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCH
Confidence                       0000  111222211            125899999999999999999999987777889999999753


Q ss_pred             -------cccHHHhccce--eEEecCC
Q 017844          172 -------KVTEAIRSRCL--NIRINSP  189 (365)
Q Consensus       172 -------~l~~~l~sR~~--~i~~~~~  189 (365)
                             .+.+.+..|+.  .++++|+
T Consensus       118 ~~~~~~~~~~~~L~~rl~~~~i~lPpL  144 (145)
T 3n70_A          118 VELAASNHIIAELYYCFAMTQIACLPL  144 (145)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred             HHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence                   35567777764  5666654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.48  E-value=1.1e-12  Score=116.64  Aligned_cols=175  Identities=19%  Similarity=0.216  Sum_probs=103.3

Q ss_pred             CCCCCCccccCHHHHHHHHHHHH------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVT------------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~------------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~   74 (365)
                      ...+|+++.|.+++++.++..+.            +-..+. ++|+|||||||||+++++++.+..   +.+.+++..+ 
T Consensus         5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l-   80 (274)
T 2x8a_A            5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVKGPEL-   80 (274)
T ss_dssp             -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTT-
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHH-
Confidence            45689999999999998887542            112233 999999999999999999996522   2333333211 


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH----------
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR----------  144 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~----------  144 (365)
                                          ..    .........++..+.....         ..+.++++||++.+..          
T Consensus        81 --------------------~~----~~~~~~~~~i~~vf~~a~~---------~~p~i~~~Deid~~~~~r~~~~~~~~  127 (274)
T 2x8a_A           81 --------------------LN----MYVGESERAVRQVFQRAKN---------SAPCVIFFDEVDALCPRRSDRETGAS  127 (274)
T ss_dssp             --------------------CS----STTHHHHHHHHHHHHHHHH---------TCSEEEEEETCTTTCC---------C
T ss_pred             --------------------Hh----hhhhHHHHHHHHHHHHHHh---------cCCCeEeeehhhhhhcccCCCcchHH
Confidence                                00    0000001123333333211         1247999999987632          


Q ss_pred             -HHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHc-CCCCC-HHHHHH
Q 017844          145 -EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKE-GLQLP-SGFATR  216 (365)
Q Consensus       145 -~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~-~~~i~-~~~~~~  216 (365)
                       ...+.++..|...  ...+.++.++|+++.+++++++  |+. .+.++.|+.++..++++.+++.. ....+ +..++.
T Consensus       128 ~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~  207 (274)
T 2x8a_A          128 VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEA  207 (274)
T ss_dssp             TTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHH
T ss_pred             HHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHH
Confidence             1234455555432  2235567778888889999987  774 89999999999999999877542 22222 223556


Q ss_pred             HHH
Q 017844          217 LAE  219 (365)
Q Consensus       217 i~~  219 (365)
                      ++.
T Consensus       208 la~  210 (274)
T 2x8a_A          208 IAG  210 (274)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            665

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.44  E-value=1.9e-13  Score=134.35  Aligned_cols=159  Identities=19%  Similarity=0.222  Sum_probs=93.3

Q ss_pred             CccccCHHHHHHHHHHHHcCCC-----------CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844           13 DQVIVHQDIAQNLKKLVTEQDC-----------PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~~~~-----------~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      ..++|++.+++.+..++.++..           .|++|+||||||||++|+++++.+....    +..+...        
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~----~~~~~~~--------  362 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAV----YTTGKGS--------  362 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEE----CCCTTCS--------
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCce----ecCCCcc--------
Confidence            4578999999888777766631           1699999999999999999987542110    0000000        


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc---
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS---  158 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~---  158 (365)
                       ..  ..+..................     .+   ..         ....+++|||++.++++.++.|++.|++..   
T Consensus       363 -~~--~~l~~~~~~~~~~g~~~~~~G-----~l---~~---------A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i  422 (595)
T 3f9v_A          363 -TA--AGLTAAVVREKGTGEYYLEAG-----AL---VL---------ADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSI  422 (595)
T ss_dssp             -TT--TTSEEECSSGGGTSSCSEEEC-----HH---HH---------HSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEE
T ss_pred             -cc--ccccceeeeccccccccccCC-----ee---Ee---------cCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEE
Confidence             00  000000000000000000000     00   00         122699999999999999999999998632   


Q ss_pred             ----------CceeEEEEecCCC-------------cccHHHhccc-eeEEecCCCHHHHHHHHHHHHH
Q 017844          159 ----------ASCRLILCCNSSS-------------KVTEAIRSRC-LNIRINSPTEEQIVKVLEFIAK  203 (365)
Q Consensus       159 ----------~~~~~Il~t~~~~-------------~l~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~  203 (365)
                                .++.+|.++|...             .+++++.||| ..+.+..++.++...+.++++.
T Consensus       423 ~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~  491 (595)
T 3f9v_A          423 AKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILD  491 (595)
T ss_dssp             ESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHT
T ss_pred             ecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence                      3455777787664             7889999999 4444444444445555555554

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.42  E-value=3.5e-13  Score=107.99  Aligned_cols=128  Identities=16%  Similarity=0.201  Sum_probs=82.1

Q ss_pred             ccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc
Q 017844           14 QVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   91 (365)
                      +++|+...++.+...+..  ....+++|+||+|||||++|++++....    ..+                         
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~-------------------------   55 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT----PWV-------------------------   55 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS----CEE-------------------------
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC----CeE-------------------------
Confidence            578998888887777653  3334599999999999999999876431    111                         


Q ss_pred             ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-cCceeEEEEecCC
Q 017844           92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-SASCRLILCCNSS  170 (365)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-~~~~~~Il~t~~~  170 (365)
                          .+.+......   .....+.   .         .+..+++|||++.++.+.+..|++.+++. +.++++|++||..
T Consensus        56 ----~~~~~~~~~~---~~~~~~~---~---------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~  116 (143)
T 3co5_A           56 ----SPARVEYLID---MPMELLQ---K---------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYA  116 (143)
T ss_dssp             ----CCSSTTHHHH---CHHHHHH---H---------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             ----EechhhCChH---hhhhHHH---h---------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence                1111110000   0111211   1         11258999999999999999999999876 3568899998865


Q ss_pred             C-c----ccHHHhccce--eEEecCC
Q 017844          171 S-K----VTEAIRSRCL--NIRINSP  189 (365)
Q Consensus       171 ~-~----l~~~l~sR~~--~i~~~~~  189 (365)
                      . .    +.+.+..|+.  .+.++|+
T Consensus       117 ~~~~~~~~~~~L~~rl~~~~i~lPpL  142 (143)
T 3co5_A          117 AGSDGISCEEKLAGLFSESVVRIPPL  142 (143)
T ss_dssp             TTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred             HHHHHhCccHHHHHHhcCcEEeCCCC
Confidence            3 2    4566777764  5666654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.40  E-value=7.5e-12  Score=115.14  Aligned_cols=220  Identities=14%  Similarity=0.154  Sum_probs=127.8

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee----c
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI----D   76 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~----~   76 (365)
                      |+|.- ..|..-+.++|.+..++.|..++..+  +.++++||+|+|||++++.+++..     +.+++++.....    .
T Consensus         1 ~~F~~-~~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~   72 (350)
T 2qen_A            1 MLFDL-RPKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRELYAERGHI   72 (350)
T ss_dssp             CCSCC-SCCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHHHHHTTTCB
T ss_pred             CCCCC-CCCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeecccccccCC
Confidence            55533 34456678999999999999999876  459999999999999999998864     133333321100    0


Q ss_pred             CCCcceeccccccccc----cc--eecCCCCcCcc-chhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----
Q 017844           77 AGSRNIDLELTTLSSA----NH--VELSPSDAGFQ-DRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----  144 (365)
Q Consensus        77 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----  144 (365)
                      +...........+...    ..  +.+........ ......+++..+.....     ..++.+++|||++.++.     
T Consensus        73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~vlvlDe~~~~~~~~~~~  147 (350)
T 2qen_A           73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGE-----ELGEFIVAFDEAQYLRFYGSRG  147 (350)
T ss_dssp             CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHH-----HHSCEEEEEETGGGGGGBTTTT
T ss_pred             CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHh-----ccCCEEEEEeCHHHHhccCccc
Confidence            0000000000000000    00  00000000000 00112233333321100     01247999999998764     


Q ss_pred             --HHHHHHHHHHhhhcCceeEEEEecCCCcc---------cHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844          145 --EAQHSLRRTMEKYSASCRLILCCNSSSKV---------TEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       145 --~~~~~Ll~~le~~~~~~~~Il~t~~~~~l---------~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~  212 (365)
                        +....|...++.. .++.+|++++....+         ..++..|. ..+.+.+++.++..+++...+...|..++++
T Consensus       148 ~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~  226 (350)
T 2qen_A          148 GKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPEN  226 (350)
T ss_dssp             THHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHH
T ss_pred             hhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence              4444444444443 467888887653211         11233344 4899999999999999998887778889999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHH
Q 017844          213 FATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       213 ~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      .+..+++.++|++.-+..+...
T Consensus       227 ~~~~i~~~tgG~P~~l~~~~~~  248 (350)
T 2qen_A          227 EIEEAVELLDGIPGWLVVFGVE  248 (350)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHH
Confidence            9999999999999865555443

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.31  E-value=6.8e-11  Score=109.61  Aligned_cols=201  Identities=16%  Similarity=0.171  Sum_probs=124.9

Q ss_pred             CccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccc
Q 017844           13 DQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLS   90 (365)
Q Consensus        13 ~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   90 (365)
                      .+++|+......+...+..  ....+++++|++|+||+++++++...-.... ..+.++|..+   |...         .
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~-~fv~vnc~~~---~~~~---------~  195 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASI---PQEL---------A  195 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS-CEEEEESSSS---CTTT---------H
T ss_pred             ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccC-CcEEEEcccC---ChHH---------H
Confidence            4578877666655554432  2223399999999999999999987442222 2444554322   0000         0


Q ss_pred             cccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-----------cC
Q 017844           91 SANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----------SA  159 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-----------~~  159 (365)
                      ....+.............. ...+.   .         .+...+++||++.|+...|..|++.|++.           +.
T Consensus       196 ~~~lfg~~~g~~tga~~~~-~g~~~---~---------a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~  262 (368)
T 3dzd_A          196 ESELFGHEKGAFTGALTRK-KGKLE---L---------ADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEV  262 (368)
T ss_dssp             HHHHHEECSCSSSSCCCCE-ECHHH---H---------TTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred             HHHhcCccccccCCccccc-CChHh---h---------cCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceee
Confidence            0000111111000000000 00000   0         12258999999999999999999999863           22


Q ss_pred             ceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc
Q 017844          160 SCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAK----KEG---LQLPSGFATRLAEKS  221 (365)
Q Consensus       160 ~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~~----~~~---~~i~~~~~~~i~~~~  221 (365)
                      ++++|.+||...       .+.+.+..|+.  .++++|+..  +++..++.+.+.    +.+   ..+++++++.+....
T Consensus       263 ~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~  342 (368)
T 3dzd_A          263 DIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE  342 (368)
T ss_dssp             CCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred             eeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence            567888888653       35567888875  566888766  666666555543    333   458999999999864


Q ss_pred             -CCCHHHHHHHHHHHHhcC
Q 017844          222 -NRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       222 -~g~lr~ai~~l~~~~~~~  239 (365)
                       .||+|++.|.++.++..+
T Consensus       343 wpGNvreL~n~i~~~~~~~  361 (368)
T 3dzd_A          343 WKGNVRELKNLIERAVILC  361 (368)
T ss_dssp             CTTHHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHHHhC
Confidence             999999999999987654

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.29  E-value=1.4e-10  Score=108.35  Aligned_cols=204  Identities=16%  Similarity=0.116  Sum_probs=123.5

Q ss_pred             CCccccCHHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844           12 LDQVIVHQDIAQNLKKLVTE--QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (365)
Q Consensus        12 ~~~iig~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (365)
                      +..++|+....+.+...+..  ....+++++|++|+||+++|+.+...........+.++|..+   |     +   . .
T Consensus       136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~---~-----~---~-~  203 (387)
T 1ny5_A          136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASI---P-----R---D-I  203 (387)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTS---C-----H---H-H
T ss_pred             chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCC---C-----H---H-H
Confidence            56788887766666665543  222238999999999999999998743222222333433222   0     0   0 0


Q ss_pred             ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-----------c
Q 017844           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-----------S  158 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-----------~  158 (365)
                      .....+............. ....+.            .....++++||++.|+.+.|..|++.|++.           +
T Consensus       204 ~~~elfg~~~g~~tga~~~-~~g~~~------------~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~  270 (387)
T 1ny5_A          204 FEAELFGYEKGAFTGAVSS-KEGFFE------------LADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIE  270 (387)
T ss_dssp             HHHHHHCBCTTSSTTCCSC-BCCHHH------------HTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred             HHHHhcCCCCCCCCCcccc-cCCcee------------eCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceee
Confidence            0000011100000000000 000000            012358999999999999999999999863           2


Q ss_pred             CceeEEEEecCCC-------cccHHHhccce--eEEecCCCH--HHHHHHHHHHHH----HcCC---CCCHHHHHHHHHH
Q 017844          159 ASCRLILCCNSSS-------KVTEAIRSRCL--NIRINSPTE--EQIVKVLEFIAK----KEGL---QLPSGFATRLAEK  220 (365)
Q Consensus       159 ~~~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~~--~~~~~iL~~~~~----~~~~---~i~~~~~~~i~~~  220 (365)
                      .++++|.+||...       .+.+.+..|+.  .+.++|+..  +++..++...+.    +.+.   .+++++++.+...
T Consensus       271 ~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~  350 (387)
T 1ny5_A          271 VNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY  350 (387)
T ss_dssp             CCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred             ccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence            3577888888643       35667777764  566666643  566655554443    3343   4789999999974


Q ss_pred             -cCCCHHHHHHHHHHHHhcCC
Q 017844          221 -SNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       221 -~~g~lr~ai~~l~~~~~~~~  240 (365)
                       +.||+|++.+.++.++..+.
T Consensus       351 ~wpGNvreL~~~i~~~~~~~~  371 (387)
T 1ny5_A          351 PWYGNVRELKNVIERAVLFSE  371 (387)
T ss_dssp             CCTTHHHHHHHHHHHHHHHCC
T ss_pred             CCCcHHHHHHHHHHHHHHhCC
Confidence             59999999999999877543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.21  E-value=3.3e-11  Score=96.99  Aligned_cols=119  Identities=19%  Similarity=0.366  Sum_probs=74.1

Q ss_pred             CCCccc--cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844           11 TLDQVI--VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus        11 ~~~~ii--g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      +|++++  ++..+...+..+    ....++|+||+|+||||+++++++.+.......+++++..+               
T Consensus        15 ~~~~f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~---------------   75 (149)
T 2kjq_A           15 SFDKFLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM---------------   75 (149)
T ss_dssp             CCCCCCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS---------------
T ss_pred             chhhcCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh---------------
Confidence            555554  244555555444    33349999999999999999999976432111222222111               


Q ss_pred             cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc-ee-EEEE
Q 017844           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS-CR-LILC  166 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~-~~-~Il~  166 (365)
                                    ...          .+          ..++++++|||++.+....+..|+.+++..... .. +|++
T Consensus        76 --------------~~~----------~~----------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiit  121 (149)
T 2kjq_A           76 --------------PLT----------DA----------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLG  121 (149)
T ss_dssp             --------------CCC----------GG----------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             --------------hHH----------HH----------HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEE
Confidence                          000          00          123479999999998877788888888765332 33 7778


Q ss_pred             ecCCCc---ccHHHhccce
Q 017844          167 CNSSSK---VTEAIRSRCL  182 (365)
Q Consensus       167 t~~~~~---l~~~l~sR~~  182 (365)
                      ++....   ..+.++||+.
T Consensus       122 s~~~p~~l~~~~~L~SRl~  140 (149)
T 2kjq_A          122 SEYTPQQLVIREDLRTRMA  140 (149)
T ss_dssp             ESSCTTTSSCCHHHHHHGG
T ss_pred             CCCCHHHccccHHHHHHHh
Confidence            775432   2289999984

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.20  E-value=9.3e-10  Score=101.25  Aligned_cols=211  Identities=12%  Similarity=0.153  Sum_probs=121.9

Q ss_pred             CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee---c
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID---L   84 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~---~   84 (365)
                      .+...+.++|.+..++.|.. +..   +.++|+||+|+|||++++.+++.+...   .+++++.............   .
T Consensus         8 ~~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   80 (357)
T 2fna_A            8 PKDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFLLE   80 (357)
T ss_dssp             CCCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHHHH
T ss_pred             CCCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHHHH
Confidence            34456789999999999998 765   469999999999999999999876321   2334332110000000000   0


Q ss_pred             ccccc--------------ccccceecCCCCcCc----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH--
Q 017844           85 ELTTL--------------SSANHVELSPSDAGF----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR--  144 (365)
Q Consensus        85 ~~~~~--------------~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~--  144 (365)
                      ....+              .....+.........    .......+++..+....      . ++.+++|||++.++.  
T Consensus        81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~-~~~vlvlDe~~~~~~~~  153 (357)
T 2fna_A           81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQAS------K-DNVIIVLDEAQELVKLR  153 (357)
T ss_dssp             HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTC------S-SCEEEEEETGGGGGGCT
T ss_pred             HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcC------C-CCeEEEEECHHHhhccC
Confidence            00000              000000000000000    00112344554444321      1 357999999998753  


Q ss_pred             --HHHHHHHHHHhhhcCceeEEEEecCCCcc---------cHHHhccc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 017844          145 --EAQHSLRRTMEKYSASCRLILCCNSSSKV---------TEAIRSRC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSG  212 (365)
Q Consensus       145 --~~~~~Ll~~le~~~~~~~~Il~t~~~~~l---------~~~l~sR~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~  212 (365)
                        +....|....+.. .++.+|++++....+         ..++..|. ..+.+.+++.++..+++...+...+...++.
T Consensus       154 ~~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~  232 (357)
T 2fna_A          154 GVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY  232 (357)
T ss_dssp             TCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH
T ss_pred             chhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH
Confidence              2333443444432 367888888754211         11244454 6899999999999999998877667766554


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHH
Q 017844          213 FATRLAEKSNRSLRRAILSFETC  235 (365)
Q Consensus       213 ~~~~i~~~~~g~lr~ai~~l~~~  235 (365)
                        ..+++.++|++.-+..+...+
T Consensus       233 --~~i~~~t~G~P~~l~~~~~~~  253 (357)
T 2fna_A          233 --EVVYEKIGGIPGWLTYFGFIY  253 (357)
T ss_dssp             --HHHHHHHCSCHHHHHHHHHHH
T ss_pred             --HHHHHHhCCCHHHHHHHHHHH
Confidence              889999999998776665554

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.18  E-value=2.8e-11  Score=102.60  Aligned_cols=58  Identities=19%  Similarity=0.250  Sum_probs=44.5

Q ss_pred             ccccCCCCCCccccCH----HHHHHHHHHHHcCC----CCeEEEECCCCCcHHHHHHHHHHHhcCC
Q 017844            4 VDKYRPKTLDQVIVHQ----DIAQNLKKLVTEQD----CPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus         4 ~~k~rP~~~~~iig~~----~~~~~l~~~l~~~~----~~~lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      ..+|++.+|+++++..    .+.+.+..++....    ..+++|+||+|+|||++++++++.+...
T Consensus        16 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           16 PREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4567889999999743    35566677776542    1459999999999999999999987543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=99.15  E-value=3.2e-10  Score=98.97  Aligned_cols=136  Identities=15%  Similarity=0.236  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHcC-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844           21 IAQNLKKLVTEQ-DCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (365)
Q Consensus        21 ~~~~l~~~l~~~-~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (365)
                      ....+..+++.. ... +++|+||||||||++++++|+.+..  .+.+     ++                         
T Consensus        89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l--~G~v-----n~-------------------------  136 (267)
T 1u0j_A           89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF--YGCV-----NW-------------------------  136 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC--EEEC-----CT-------------------------
T ss_pred             HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc--ccee-----ec-------------------------
Confidence            345677777654 222 4999999999999999999985310  0000     00                         


Q ss_pred             CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh--------hhc-----CceeEEE
Q 017844           99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME--------KYS-----ASCRLIL  165 (365)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le--------~~~-----~~~~~Il  165 (365)
                       ....                 ..  ++......+++.||+... .++++.+..+++        ...     ....+|+
T Consensus       137 -~~~~-----------------f~--l~~~~~k~i~l~Ee~~~~-~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIi  195 (267)
T 1u0j_A          137 -TNEN-----------------FP--FNDCVDKMVIWWEEGKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIV  195 (267)
T ss_dssp             -TCSS-----------------CT--TGGGSSCSEEEECSCCEE-TTTHHHHHHHHTTCCEEC------CCEECCCCEEE
T ss_pred             -cccc-----------------cc--cccccccEEEEeccccch-hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEE
Confidence             0000                 00  001123367777777654 456667777776        322     4567999


Q ss_pred             EecCCC-----------cccHHHhccceeEEec--------CCCHHHHHHHHHHHHHHcCCCCC
Q 017844          166 CCNSSS-----------KVTEAIRSRCLNIRIN--------SPTEEQIVKVLEFIAKKEGLQLP  210 (365)
Q Consensus       166 ~t~~~~-----------~l~~~l~sR~~~i~~~--------~~~~~~~~~iL~~~~~~~~~~i~  210 (365)
                      +||..-           ...+.|+|||..++|.        +++.+++..++. .++.++.+++
T Consensus       196 tsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~-w~~~~~~~~~  258 (267)
T 1u0j_A          196 TSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR-WAKDHVVEVE  258 (267)
T ss_dssp             EESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH-HHHHTCCCCC
T ss_pred             EecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH-HHHHcCCCCc
Confidence            999722           4558899999999999        899999999998 4466766654

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=99.11  E-value=4.9e-10  Score=107.11  Aligned_cols=147  Identities=16%  Similarity=0.208  Sum_probs=80.0

Q ss_pred             CCcccccCCCCCCccc-cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC
Q 017844            1 MLWVDKYRPKTLDQVI-VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS   79 (365)
Q Consensus         1 ~~w~~k~rP~~~~~ii-g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~   79 (365)
                      .+|+.||||.+|+++- +|..++..+...+..+.. +++|.|++|||||+++..++..+.......+.+      ..|++
T Consensus        12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~------~a~T~   84 (459)
T 3upu_A           12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGETGIIL------AAPTH   84 (459)
T ss_dssp             ---------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE------EESSH
T ss_pred             CCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE------ecCcH
Confidence            3799999999999997 788888888888877653 699999999999999999998875543211111      11211


Q ss_pred             cceeccccccccccceecCCCCcCccchhHHHHHHHHHHh-------cCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 017844           80 RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK-------NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRR  152 (365)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~  152 (365)
                      +........      ...        ...++...+.....       ..........+.+++||||++.++...+..|++
T Consensus        85 ~Aa~~l~~~------~~~--------~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~  150 (459)
T 3upu_A           85 AAKKILSKL------SGK--------EASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLS  150 (459)
T ss_dssp             HHHHHHHHH------HSS--------CEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHH
T ss_pred             HHHHHHHhh------hcc--------chhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHH
Confidence            110000000      000        00000010000000       000000122356899999999999988888887


Q ss_pred             HHhhhcCceeEEEEecCCC
Q 017844          153 TMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~  171 (365)
                      .+.   .+..++++.....
T Consensus       151 ~~~---~~~~~~~vGD~~Q  166 (459)
T 3upu_A          151 TIP---PWCTIIGIGDNKQ  166 (459)
T ss_dssp             HSC---TTCEEEEEECTTS
T ss_pred             hcc---CCCEEEEECCHHH
Confidence            775   4667888776544

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.07  E-value=1.5e-10  Score=99.70  Aligned_cols=132  Identities=15%  Similarity=0.144  Sum_probs=73.9

Q ss_pred             cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh--
Q 017844           31 EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY--  108 (365)
Q Consensus        31 ~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  108 (365)
                      .|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+.......      ....+.+.+++.......  
T Consensus        29 ~Ge~--~~iiG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~------~~~~i~~v~q~~~l~~~~tv   99 (224)
T 2pcj_A           29 KGEF--VSIIGASGSGKSTLLYILGL-LDAPTEGKVFLEGKEVDYTNEKELSLL------RNRKLGFVFQFHYLIPELTA   99 (224)
T ss_dssp             TTCE--EEEEECTTSCHHHHHHHHTT-SSCCSEEEEEETTEECCSSCHHHHHHH------HHHHEEEECSSCCCCTTSCH
T ss_pred             CCCE--EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEECCCCCHHHHHHH------HhCcEEEEecCcccCCCCCH
Confidence            4444  88999999999999999998 667888888888755410000000000      001122222211111100  


Q ss_pred             --------------------HHHHHHHHHHhcC-----CCCCC------------CCCCceEEEEeCC-CCCCHHHHHHH
Q 017844          109 --------------------VVQEVIKEMAKNR-----PIDTK------------GKRGFKVLVLNEV-DKLSREAQHSL  150 (365)
Q Consensus       109 --------------------~~~~~l~~~~~~~-----~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~L  150 (365)
                                          .+.+.++.+.-..     +..+|            ...+++++++||+ ..|++.....+
T Consensus       100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~  179 (224)
T 2pcj_A          100 LENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV  179 (224)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred             HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHH
Confidence                                1122222211100     00111            2347899999998 78999999999


Q ss_pred             HHHHhhhc-CceeEEEEecCCC
Q 017844          151 RRTMEKYS-ASCRLILCCNSSS  171 (365)
Q Consensus       151 l~~le~~~-~~~~~Il~t~~~~  171 (365)
                      .+.+.+.. .+..+|++|++.+
T Consensus       180 ~~~l~~l~~~g~tvi~vtHd~~  201 (224)
T 2pcj_A          180 MDIFLKINEGGTSIVMVTHERE  201 (224)
T ss_dssp             HHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHHHHCCCEEEEEcCCHH
Confidence            99988763 3456777776643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=99.05  E-value=1.3e-10  Score=105.00  Aligned_cols=55  Identities=24%  Similarity=0.387  Sum_probs=42.3

Q ss_pred             cccCCCCCCccccC----HHHHHHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844            5 DKYRPKTLDQVIVH----QDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus         5 ~k~rP~~~~~iig~----~~~~~~l~~~l~~~---~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ..+++.+|+++++.    ..+...+..++...   ...+++|+||+|+|||+++++++..+.
T Consensus       116 ~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             GGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            45677899999863    34556666777652   134599999999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.04  E-value=3.7e-10  Score=103.38  Aligned_cols=143  Identities=16%  Similarity=0.190  Sum_probs=83.7

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhH
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV  109 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (365)
                      ..|..  +.|.||+|+||||+++++++ +..++.|.+.+++.++...+ ..  +.  .  .....+.+.+++.......+
T Consensus        52 ~~Gei--~~IiGpnGaGKSTLlr~i~G-L~~p~~G~I~i~G~~i~~~~-~~--~~--~--~~r~~Ig~v~Q~~~l~~~~T  121 (366)
T 3tui_C           52 PAGQI--YGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQELTTLS-ES--EL--T--KARRQIGMIFQHFNLLSSRT  121 (366)
T ss_dssp             CTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECSSCC-HH--HH--H--HHHTTEEEECSSCCCCTTSC
T ss_pred             cCCCE--EEEEcCCCchHHHHHHHHhc-CCCCCceEEEECCEECCcCC-HH--HH--H--HHhCcEEEEeCCCccCCCCC
Confidence            34444  89999999999999999998 77888899988886551100 00  00  0  00011222222222111111


Q ss_pred             ----------------------HHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844          110 ----------------------VQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus       110 ----------------------~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                                            +.+.++.+.-.     .+..+|            ...+++++++||+ ..|++..+..
T Consensus       122 V~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~  201 (366)
T 3tui_C          122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS  201 (366)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence                                  22222222110     111111            2357899999998 8899999999


Q ss_pred             HHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ++++|.+...  +..+|++|++.+ ....+.+|+.+
T Consensus       202 i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~v  236 (366)
T 3tui_C          202 ILELLKDINRRLGLTILLITHEMD-VVKRICDCVAV  236 (366)
T ss_dssp             HHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence            9999987632  566777777654 33455666643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=99.04  E-value=5.2e-10  Score=93.28  Aligned_cols=119  Identities=17%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHcCCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844           20 DIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (365)
                      ..+..++.++++-.. .+++|+||||+||||++.++++.+.+..                                +.+.
T Consensus        43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i--------------------------------~~fa   90 (212)
T 1tue_A           43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV--------------------------------ISFV   90 (212)
T ss_dssp             HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE--------------------------------CCCC
T ss_pred             HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe--------------------------------eeEE
Confidence            345677777764211 2499999999999999999999763210                                0000


Q ss_pred             CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-HHHHHHHHHHhhhc-------------CceeEE
Q 017844           99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-EAQHSLRRTMEKYS-------------ASCRLI  164 (365)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-~~~~~Ll~~le~~~-------------~~~~~I  164 (365)
                      .+... .       .      ..+     ..+.+++++||++.-.. .....+...++..+             ....+|
T Consensus        91 ns~s~-f-------~------l~~-----l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlI  151 (212)
T 1tue_A           91 NSTSH-F-------W------LEP-----LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPIL  151 (212)
T ss_dssp             CSSSC-G-------G------GGG-----GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEE
T ss_pred             eccch-h-------h------hcc-----cCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEE
Confidence            00000 0       0      001     11347999999973211 11234555555431             124699


Q ss_pred             EEecCC---CcccHHHhccceeEEecCC
Q 017844          165 LCCNSS---SKVTEAIRSRCLNIRINSP  189 (365)
Q Consensus       165 l~t~~~---~~l~~~l~sR~~~i~~~~~  189 (365)
                      ++||..   +...+.|.||+..+.|+.+
T Consensus       152 ITtN~~~~~~~~~~~L~SRi~~f~F~~~  179 (212)
T 1tue_A          152 LTTNIHPAKDNRWPYLESRITVFEFPNA  179 (212)
T ss_dssp             EEESSCTTSSSSCHHHHTSCEEEECCSC
T ss_pred             EecCCCcccccchhhhhhhEEEEEcCCC
Confidence            999974   3455789999999998844

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.03  E-value=2.2e-10  Score=99.43  Aligned_cols=52  Identities=8%  Similarity=0.182  Sum_probs=39.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|++.....+++.+.+...  +..+|++|++.+ + ..+.+|+.
T Consensus       162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-~-~~~~d~i~  216 (235)
T 3tif_A          162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERII  216 (235)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-H-HTTSSEEE
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-H-HHhCCEEE
Confidence            47899999998 88999999999999987643  567788887765 3 24555554

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.01  E-value=6.3e-10  Score=97.95  Aligned_cols=137  Identities=14%  Similarity=0.198  Sum_probs=77.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch---------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---------  107 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  107 (365)
                      +.|.||+|+||||+++++++ +..++.|.+.+++..+. .+.......       ...+.+.+++......         
T Consensus        53 ~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~i~-~~~~~~~~~-------~~~i~~v~Q~~~l~~~~tv~e~l~~  123 (263)
T 2olj_A           53 VVVIGPSGSGKSTFLRCLNL-LEDFDEGEIIIDGINLK-AKDTNLNKV-------REEVGMVFQRFNLFPHMTVLNNITL  123 (263)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEESS-STTCCHHHH-------HHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHc-CCCCCCcEEEECCEECC-CccccHHHH-------hCcEEEEeCCCcCCCCCCHHHHHHH
Confidence            89999999999999999998 66788888888875541 000000000       0011111111111100         


Q ss_pred             --------------hHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHh
Q 017844          108 --------------YVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTME  155 (365)
Q Consensus       108 --------------~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le  155 (365)
                                    ..+.+.++.+.-.     .+..+|            ...+++++++||+ ..|++..+..+.+.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~  203 (263)
T 2olj_A          124 APMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK  203 (263)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence                          1122222222110     000111            1347899999998 8899999999999988


Q ss_pred             hhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          156 KYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       156 ~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +... +..+|++|++.+ ....+.+|+.+
T Consensus       204 ~l~~~g~tvi~vtHd~~-~~~~~~d~v~~  231 (263)
T 2olj_A          204 QLANEGMTMVVVTHEMG-FAREVGDRVLF  231 (263)
T ss_dssp             HHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred             HHHhCCCEEEEEcCCHH-HHHHhCCEEEE
Confidence            7633 456666666543 33445566543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.00  E-value=2.3e-10  Score=100.47  Aligned_cols=132  Identities=17%  Similarity=0.252  Sum_probs=75.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch---------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR---------  107 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  107 (365)
                      +.|.||+|+||||+++++++ +..+..+.+.+++... ... ..  ..       ...+.+.+++......         
T Consensus        44 ~~l~G~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~-~~~-~~--~~-------~~~i~~v~q~~~l~~~ltv~enl~~  111 (256)
T 1vpl_A           44 FGLIGPNGAGKTTTLRIIST-LIKPSSGIVTVFGKNV-VEE-PH--EV-------RKLISYLPEEAGAYRNMQGIEYLRF  111 (256)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEET-TTC-HH--HH-------HTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCceEEEECCEEC-Ccc-HH--HH-------hhcEEEEcCCCCCCCCCcHHHHHHH
Confidence            89999999999999999998 6678888888877543 100 00  00       0012222221111111         


Q ss_pred             -------------hHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844          108 -------------YVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (365)
Q Consensus       108 -------------~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~  156 (365)
                                   ..+.+.++.+.-.     .+..+|            ...+++++++||+ ..|++.....+.+.|.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~  191 (256)
T 1vpl_A          112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ  191 (256)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence                         0122222222110     000111            1347899999998 78999999999999887


Q ss_pred             hc-CceeEEEEecCCCcccHHHhccc
Q 017844          157 YS-ASCRLILCCNSSSKVTEAIRSRC  181 (365)
Q Consensus       157 ~~-~~~~~Il~t~~~~~l~~~l~sR~  181 (365)
                      .. .+..+|++|++.+. ...+.+|+
T Consensus       192 l~~~g~tiiivtHd~~~-~~~~~d~v  216 (256)
T 1vpl_A          192 ASQEGLTILVSSHNMLE-VEFLCDRI  216 (256)
T ss_dssp             HHHTTCEEEEEECCHHH-HTTTCSEE
T ss_pred             HHhCCCEEEEEcCCHHH-HHHHCCEE
Confidence            64 34567777765442 23334454

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.97  E-value=5.4e-10  Score=98.28  Aligned_cols=53  Identities=11%  Similarity=0.115  Sum_probs=39.5

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|++|++.+.+ ..+.+|+.
T Consensus       170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~-~~~~d~v~  224 (257)
T 1g6h_A          170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV-LNYIDHLY  224 (257)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT-GGGCSEEE
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH-HHhCCEEE
Confidence            47899999998 88999999999999887643 56677777776543 34556653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.96  E-value=5.1e-10  Score=99.15  Aligned_cols=143  Identities=15%  Similarity=0.178  Sum_probs=81.1

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc------
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA------  102 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  102 (365)
                      +..|..  +.|.||+|+||||+++++++ +..+..|.+.+++..+ ..........       ...+.+.+++.      
T Consensus        31 i~~Ge~--~~iiGpnGsGKSTLl~~l~G-l~~p~~G~I~~~G~~i-~~~~~~~~~~-------~~~ig~v~Q~~~~~~~~   99 (275)
T 3gfo_A           31 IKRGEV--TAILGGNGVGKSTLFQNFNG-ILKPSSGRILFDNKPI-DYSRKGIMKL-------RESIGIVFQDPDNQLFS   99 (275)
T ss_dssp             EETTSE--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEC-CCSHHHHHHH-------HHSEEEECSSGGGTCCS
T ss_pred             EcCCCE--EEEECCCCCCHHHHHHHHHc-CCCCCCeEEEECCEEC-CcccccHHHH-------hCcEEEEEcCccccccc
Confidence            334554  89999999999999999998 6688888888887654 1000000000       00111111110      


Q ss_pred             --------------Cccch---hHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHH
Q 017844          103 --------------GFQDR---YVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQ  147 (365)
Q Consensus       103 --------------~~~~~---~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~  147 (365)
                                    +....   ..+.+.++.+.-.     .+..+|            ...+++++|+||+ ..|++..+
T Consensus       100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~  179 (275)
T 3gfo_A          100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV  179 (275)
T ss_dssp             SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence                          10000   0122222221100     001111            1347899999998 78999999


Q ss_pred             HHHHHHHhhhc-C-ceeEEEEecCCCcccHHHhcccee
Q 017844          148 HSLRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       148 ~~Ll~~le~~~-~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ..+++.+.+.. . +..+|++|++.+.+ ..+.+|+.+
T Consensus       180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~-~~~~drv~~  216 (275)
T 3gfo_A          180 SEIMKLLVEMQKELGITIIIATHDIDIV-PLYCDNVFV  216 (275)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCCSSG-GGGCSEEEE
T ss_pred             HHHHHHHHHHHhhCCCEEEEEecCHHHH-HHhCCEEEE
Confidence            99999988764 2 56677777776643 445666543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.96  E-value=4.9e-09  Score=86.79  Aligned_cols=68  Identities=15%  Similarity=0.268  Sum_probs=51.7

Q ss_pred             CceEEEEeC--C-CCCCHHHHHHHHHHHhhhcCceeEEEEec--CCCcccHHHhcc--ceeEEecCCCHHHHHHHHH
Q 017844          130 GFKVLVLNE--V-DKLSREAQHSLRRTMEKYSASCRLILCCN--SSSKVTEAIRSR--CLNIRINSPTEEQIVKVLE  199 (365)
Q Consensus       130 ~~~vliiDE--~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~--~~~~l~~~l~sR--~~~i~~~~~~~~~~~~iL~  199 (365)
                      +++++++||  + ..+++..++.+.+.+++.  ...+|++++  +...+...+.+|  +.++.+.+.+.+++...+.
T Consensus        99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~  173 (178)
T 1ye8_A           99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL  173 (178)
T ss_dssp             TTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred             CCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence            458999999  4 567888999999999873  444677774  555677888888  7889998888766655543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.95  E-value=6.7e-10  Score=102.35  Aligned_cols=137  Identities=15%  Similarity=0.233  Sum_probs=81.9

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhH
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV  109 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (365)
                      ..|..  +.|.||+|+||||++++|++ +..++.|.+.+++..+...+..            ...+.+..++...+...+
T Consensus        27 ~~Ge~--~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~~~~~~~~------------~r~ig~VfQ~~~l~p~lt   91 (381)
T 3rlf_A           27 HEGEF--VVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPA------------ERGVGMVFQSYALYPHLS   91 (381)
T ss_dssp             CTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTCCGG------------GSCEEEECTTCCCCTTSC
T ss_pred             CCCCE--EEEEcCCCchHHHHHHHHHc-CCCCCCeEEEECCEECCCCCHH------------HCCEEEEecCCcCCCCCC
Confidence            34444  89999999999999999999 7788889999888665111110            011222222222111111


Q ss_pred             HH------------------HHHHHHHhcCCC---------CCCC------------CCCceEEEEeCC-CCCCHHHHHH
Q 017844          110 VQ------------------EVIKEMAKNRPI---------DTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus       110 ~~------------------~~l~~~~~~~~~---------~~~~------------~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                      +.                  +...++.....+         .+|+            ..+++++++||+ ..|+...+..
T Consensus        92 V~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~  171 (381)
T 3rlf_A           92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ  171 (381)
T ss_dssp             HHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence            11                  111222111111         1121            126889999998 8899999988


Q ss_pred             HHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      +++.|.+...  +..+|++|++.+. ...+.+|+.
T Consensus       172 l~~~l~~l~~~~g~tii~vTHd~~e-a~~~aDri~  205 (381)
T 3rlf_A          172 MRIEISRLHKRLGRTMIYVTHDQVE-AMTLADKIV  205 (381)
T ss_dssp             HHHHHHHHHHHHCCEEEEECSCHHH-HHHHCSEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEECCHHH-HHHhCCEEE
Confidence            8888877632  5677777776553 234566654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.94  E-value=1.2e-09  Score=99.99  Aligned_cols=138  Identities=17%  Similarity=0.235  Sum_probs=80.7

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch-
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR-  107 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  107 (365)
                      +..|..  +.|.||+|+||||++++|++ +..++.+.+.+++..+...+..            ...+.+..++...... 
T Consensus        38 i~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~------------~r~ig~v~Q~~~l~~~l  102 (355)
T 1z47_A           38 IREGEM--VGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGKRVTDLPPQ------------KRNVGLVFQNYALFQHM  102 (355)
T ss_dssp             EETTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTCCGG------------GSSEEEECGGGCCCTTS
T ss_pred             ECCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCccEEEECCEECCcCChh------------hCcEEEEecCcccCCCC
Confidence            344555  89999999999999999998 6788888888888654111100            0111222221111111 


Q ss_pred             ---------------------hHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844          108 ---------------------YVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQH  148 (365)
Q Consensus       108 ---------------------~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~  148 (365)
                                           ..+.+.++.+.-.     .+..+|            ...+++++++||+ ..|+.....
T Consensus       103 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~  182 (355)
T 1z47_A          103 TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR  182 (355)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence                                 1122222221100     011111            1347899999998 889999999


Q ss_pred             HHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       149 ~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+.+.|.+...  +..+|++|++.+. ...+.+|+.
T Consensus       183 ~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~  217 (355)
T 1z47_A          183 ELRTFVRQVHDEMGVTSVFVTHDQEE-ALEVADRVL  217 (355)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEE
T ss_pred             HHHHHHHHHHHhcCCEEEEECCCHHH-HHHhCCEEE
Confidence            88888877532  4667777776543 234556654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.93  E-value=9.2e-10  Score=93.83  Aligned_cols=139  Identities=12%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc------cccccccceecCCCCc
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL------TTLSSANHVELSPSDA  102 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  102 (365)
                      +..|..  +.|.||+|+||||+++++++ +..+..+.+.+++..+.  +......+..      ...+..+.+.+.....
T Consensus        32 i~~Ge~--~~iiG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~  106 (214)
T 1sgw_A           32 IEKGNV--VNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY  106 (214)
T ss_dssp             EETTCC--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT
T ss_pred             EcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc
Confidence            344555  89999999999999999998 66788888888775431  0000000000      0000000000000000


Q ss_pred             C-ccchhHHHHHHHHHHhcC----CCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeE
Q 017844          103 G-FQDRYVVQEVIKEMAKNR----PIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRL  163 (365)
Q Consensus       103 ~-~~~~~~~~~~l~~~~~~~----~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~  163 (365)
                      + ......+.+.++.+.-..    +..+|            ...+++++++||+ ..|++.....+.+.+.+.. .+..+
T Consensus       107 ~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~ti  186 (214)
T 1sgw_A          107 GVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV  186 (214)
T ss_dssp             TCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEE
T ss_pred             CCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            0 001112333333321110    00111            1347899999998 7899888888888887754 24567


Q ss_pred             EEEecCCCc
Q 017844          164 ILCCNSSSK  172 (365)
Q Consensus       164 Il~t~~~~~  172 (365)
                      |++|++.+.
T Consensus       187 iivtHd~~~  195 (214)
T 1sgw_A          187 IISSREELS  195 (214)
T ss_dssp             EEEESSCCT
T ss_pred             EEEeCCHHH
Confidence            777777653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.92  E-value=1.3e-09  Score=100.03  Aligned_cols=148  Identities=14%  Similarity=0.275  Sum_probs=81.2

Q ss_pred             cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccccc------cccccceecCCCCcC
Q 017844           31 EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT------LSSANHVELSPSDAG  103 (365)
Q Consensus        31 ~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~  103 (365)
                      .|..  +.|.||+|+||||+++++++ +..++.+.+.+++..+...+. .+...+.+..      ++..+.+.+.....+
T Consensus        28 ~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~  104 (359)
T 2yyz_A           28 DGEF--VALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR  104 (359)
T ss_dssp             TTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC
T ss_pred             CCCE--EEEEcCCCchHHHHHHHHHC-CCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence            4444  88999999999999999999 678888989888865411111 0111110000      000001111100000


Q ss_pred             ccc---hhHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--c
Q 017844          104 FQD---RYVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--S  160 (365)
Q Consensus       104 ~~~---~~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~  160 (365)
                      ...   ...+.+.++.+.-.     .+..+|            ...+++++++||+ ..|+......+.+.+.+...  +
T Consensus       105 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g  184 (359)
T 2yyz_A          105 ISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG  184 (359)
T ss_dssp             SHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            000   11233333332110     111111            1347899999998 88999999988888877532  5


Q ss_pred             eeEEEEecCCCcccHHHhccce
Q 017844          161 CRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ..+|++|++.+.. ..+.+|+.
T Consensus       185 ~tvi~vTHd~~~~-~~~adri~  205 (359)
T 2yyz_A          185 ITSVYVTHDQAEA-MTMASRIA  205 (359)
T ss_dssp             CEEEEEESCHHHH-HHHCSEEE
T ss_pred             CEEEEEcCCHHHH-HHhCCEEE
Confidence            6778888775532 34556654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.92  E-value=8.8e-10  Score=95.93  Aligned_cols=148  Identities=11%  Similarity=0.091  Sum_probs=80.0

Q ss_pred             cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC----cceecccc------ccccccceecCCC
Q 017844           31 EQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS----RNIDLELT------TLSSANHVELSPS  100 (365)
Q Consensus        31 ~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~  100 (365)
                      .|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+..    ....+.+.      ..+..+.+.+...
T Consensus        31 ~Ge~--~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~  107 (240)
T 1ji0_A           31 RGQI--VTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY  107 (240)
T ss_dssp             TTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred             CCCE--EEEECCCCCCHHHHHHHHhC-CCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence            4444  89999999999999999998 6678888888887544100000    00000000      0000011111100


Q ss_pred             CcCccc--hhHHHHHHHHHH-hc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-
Q 017844          101 DAGFQD--RYVVQEVIKEMA-KN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-  158 (365)
Q Consensus       101 ~~~~~~--~~~~~~~l~~~~-~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-  158 (365)
                      ......  ...+.+.++.+. -.     .+..+|            ...+++++++||+ ..|++.....+.+.+.+.. 
T Consensus       108 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~  187 (240)
T 1ji0_A          108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ  187 (240)
T ss_dssp             TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            000011  112233333221 11     111122            1347899999998 7899999999999988764 


Q ss_pred             CceeEEEEecCCCcccHHHhccce
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+..+|++|++.+. ...+.+|+.
T Consensus       188 ~g~tvi~vtHd~~~-~~~~~d~v~  210 (240)
T 1ji0_A          188 EGTTILLVEQNALG-ALKVAHYGY  210 (240)
T ss_dssp             TTCCEEEEESCHHH-HHHHCSEEE
T ss_pred             CCCEEEEEecCHHH-HHHhCCEEE
Confidence            35667777776542 234555543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.92  E-value=8.2e-10  Score=95.98  Aligned_cols=145  Identities=12%  Similarity=0.179  Sum_probs=77.3

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCC-Ccceeccccc------cccccceecCCCCcCcc-ch
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAG-SRNIDLELTT------LSSANHVELSPSDAGFQ-DR  107 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~  107 (365)
                      .+.|.||+|+||||+++++++ +..++.|.+.+++..+...+. .....+.+..      .+..+.+.+.....+.. ..
T Consensus        26 ~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~  104 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAG-IVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD  104 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence            388999999999999999998 667888888888755411000 0000000000      00000011110000000 00


Q ss_pred             hHHHHHHHHHHhcC-----CCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEe
Q 017844          108 YVVQEVIKEMAKNR-----PIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCC  167 (365)
Q Consensus       108 ~~~~~~l~~~~~~~-----~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t  167 (365)
                      ..+.+.++.+.-..     +..+|            ...+++++++||+ ..|++.....+.+.+.+...  +..+|++|
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt  184 (240)
T 2onk_A          105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT  184 (240)
T ss_dssp             HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            11222222211100     00111            1347899999998 88999999999999987632  45677777


Q ss_pred             cCCCcccHHHhccce
Q 017844          168 NSSSKVTEAIRSRCL  182 (365)
Q Consensus       168 ~~~~~l~~~l~sR~~  182 (365)
                      ++.+. ...+.+|+.
T Consensus       185 Hd~~~-~~~~~d~i~  198 (240)
T 2onk_A          185 HDLIE-AAMLADEVA  198 (240)
T ss_dssp             SCHHH-HHHHCSEEE
T ss_pred             CCHHH-HHHhCCEEE
Confidence            76543 234555554

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.92  E-value=1.3e-09  Score=99.66  Aligned_cols=148  Identities=14%  Similarity=0.213  Sum_probs=80.6

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC------CCcceecccccc------ccccceec
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA------GSRNIDLELTTL------SSANHVEL   97 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~   97 (365)
                      ..|..  +.|.||+|+||||++++|++ +..++.|.+.+++..+ ...      ..+...+.+...      +..+.+.+
T Consensus        28 ~~Ge~--~~llGpsGsGKSTLLr~iaG-l~~p~~G~I~i~G~~i-~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~  103 (359)
T 3fvq_A           28 DPGEI--LFIIGASGCGKTTLLRCLAG-FEQPDSGEISLSGKTI-FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAY  103 (359)
T ss_dssp             CTTCE--EEEEESTTSSHHHHHHHHHT-SSCCSEEEEEETTEEE-ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHT
T ss_pred             cCCCE--EEEECCCCchHHHHHHHHhc-CCCCCCcEEEECCEEC-cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHH
Confidence            34544  89999999999999999999 7788889999888665 111      001111100000      00001111


Q ss_pred             CCCCcCccc---hhHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844           98 SPSDAGFQD---RYVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (365)
Q Consensus        98 ~~~~~~~~~---~~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~  156 (365)
                      .....+...   ...+.+.++.+.-.     .+..+|            ...+++++++||+ ..|++.....+++.+.+
T Consensus       104 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~  183 (359)
T 3fvq_A          104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA  183 (359)
T ss_dssp             TSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            111011111   11233333332211     111122            1347899999998 88999888888765544


Q ss_pred             h--cCceeEEEEecCCCcccHHHhccce
Q 017844          157 Y--SASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       157 ~--~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .  ..+..+|++|++.+. ...+.+|+.
T Consensus       184 ~~~~~g~tvi~vTHd~~e-a~~~aDri~  210 (359)
T 3fvq_A          184 ALRANGKSAVFVSHDREE-ALQYADRIA  210 (359)
T ss_dssp             HHHHTTCEEEEECCCHHH-HHHHCSEEE
T ss_pred             HHHhCCCEEEEEeCCHHH-HHHHCCEEE
Confidence            3  235677777777553 234566654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.91  E-value=7.5e-10  Score=97.76  Aligned_cols=150  Identities=15%  Similarity=0.158  Sum_probs=79.8

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc---ceecccc------ccccccceecCCC
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR---NIDLELT------TLSSANHVELSPS  100 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~  100 (365)
                      ..|..  +.|.||+|+||||+++++++ +..++.|.+.+++.++...+...   ...+.+.      ..+..+.+.+...
T Consensus        35 ~~Ge~--~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  111 (266)
T 4g1u_C           35 ASGEM--VAIIGPNGAGKSTLLRLLTG-YLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRA  111 (266)
T ss_dssp             ETTCE--EEEECCTTSCHHHHHHHHTS-SSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGT
T ss_pred             cCCCE--EEEECCCCCcHHHHHHHHhc-CCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhh
Confidence            34544  89999999999999999998 67888898888886541100000   0000000      0000000101000


Q ss_pred             CcC-ccchhHHHHHHHHHHhcC-----CCCCC------------CCC------CceEEEEeCC-CCCCHHHHHHHHHHHh
Q 017844          101 DAG-FQDRYVVQEVIKEMAKNR-----PIDTK------------GKR------GFKVLVLNEV-DKLSREAQHSLRRTME  155 (365)
Q Consensus       101 ~~~-~~~~~~~~~~l~~~~~~~-----~~~~~------------~~~------~~~vliiDE~-~~L~~~~~~~Ll~~le  155 (365)
                      ... ......+.+.++.+.-..     +..+|            ...      +++++++||+ ..|++..+..+++.+.
T Consensus       112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~  191 (266)
T 4g1u_C          112 PYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR  191 (266)
T ss_dssp             TSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            000 001112223333221100     00111            012      7899999998 8899999999999998


Q ss_pred             hhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          156 KYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       156 ~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +...  +..+|++|++.+ ....+.+|+.+
T Consensus       192 ~l~~~~~~tvi~vtHdl~-~~~~~~d~v~v  220 (266)
T 4g1u_C          192 QLTRQEPLAVCCVLHDLN-LAALYADRIML  220 (266)
T ss_dssp             HHHHHSSEEEEEECSCHH-HHHHHCSEEEE
T ss_pred             HHHHcCCCEEEEEEcCHH-HHHHhCCEEEE
Confidence            7643  345666666544 33445666543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.91  E-value=1.6e-09  Score=99.46  Aligned_cols=137  Identities=19%  Similarity=0.290  Sum_probs=81.0

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhH
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV  109 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (365)
                      ..|..  +.|.||+|+||||++++|++ +..++.+.+.+++..+...+..            ...+.+..++...+...+
T Consensus        27 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~------------~r~ig~v~Q~~~l~~~lt   91 (362)
T 2it1_A           27 KDGEF--MALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTELPPK------------DRNVGLVFQNWALYPHMT   91 (362)
T ss_dssp             CTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGG------------GTTEEEECTTCCCCTTSC
T ss_pred             CCCCE--EEEECCCCchHHHHHHHHhc-CCCCCceEEEECCEECCcCCHh------------HCcEEEEecCcccCCCCC
Confidence            34444  89999999999999999999 6788888888888654111100            011222222221111111


Q ss_pred             ----------------------HHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHH
Q 017844          110 ----------------------VQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus       110 ----------------------~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                                            +.+.++.+.-.     .+..+|            ...+++++++||+ ..|+......
T Consensus        92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~  171 (362)
T 2it1_A           92 VYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE  171 (362)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence                                  12222221110     000111            1247899999998 8899999998


Q ss_pred             HHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      +.+.|.+...  +..+|++|++.+.. ..+.+|+.
T Consensus       172 l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~  205 (362)
T 2it1_A          172 VRAELKRLQKELGITTVYVTHDQAEA-LAMADRIA  205 (362)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEE
T ss_pred             HHHHHHHHHHhCCCEEEEECCCHHHH-HHhCCEEE
Confidence            8888877532  56788888775532 34556654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.90  E-value=1.6e-09  Score=100.03  Aligned_cols=144  Identities=15%  Similarity=0.266  Sum_probs=82.2

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh-
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-  108 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  108 (365)
                      ..|..  +.|.||+|+||||++++|++ +..++.+.+.+++..+......  ...  .  .....+.+..++....... 
T Consensus        27 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~~~~~~~~--~~~--~--~~~r~ig~v~Q~~~l~~~lt   97 (372)
T 1g29_1           27 KDGEF--MILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKG--IFV--P--PKDRDIAMVFQSYALYPHMT   97 (372)
T ss_dssp             ETTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEEEGGGT--EEC--C--GGGSSEEEECSCCCCCTTSC
T ss_pred             cCCCE--EEEECCCCcHHHHHHHHHHc-CCCCCccEEEECCEECcccccc--ccC--C--HhHCCEEEEeCCCccCCCCC
Confidence            34444  89999999999999999999 6788889998888665110000  000  0  0001122222222111111 


Q ss_pred             ---------------------HHHHHHHHHHhc-----CCCCCCC------------CCCceEEEEeCC-CCCCHHHHHH
Q 017844          109 ---------------------VVQEVIKEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQHS  149 (365)
Q Consensus       109 ---------------------~~~~~l~~~~~~-----~~~~~~~------------~~~~~vliiDE~-~~L~~~~~~~  149 (365)
                                           .+.+.++.+.-.     .+..+|+            ..+++++++||+ ..|+......
T Consensus        98 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~  177 (372)
T 1g29_1           98 VYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR  177 (372)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence                                 122223222110     1111121            237899999998 8899999998


Q ss_pred             HHHHHhhhcC--ceeEEEEecCCCcccHHHhcccee
Q 017844          150 LRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       150 Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +.+.|.+...  +..+|++|++.+. ...+.+|+.+
T Consensus       178 l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~v  212 (372)
T 1g29_1          178 MRAELKKLQRQLGVTTIYVTHDQVE-AMTMGDRIAV  212 (372)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEE
T ss_pred             HHHHHHHHHHhcCCEEEEECCCHHH-HHHhCCEEEE
Confidence            8888877532  5678888877553 2345566543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.89  E-value=2.1e-09  Score=99.04  Aligned_cols=150  Identities=15%  Similarity=0.252  Sum_probs=82.8

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccceecCCCCc
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANHVELSPSDA  102 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~  102 (365)
                      ..|..  +.|.||+|+||||++++|++ +..++.+.+.+++..+...+ ..+...+.+..      ++..+.+.+.....
T Consensus        35 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  111 (372)
T 1v43_A           35 KDGEF--LVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK  111 (372)
T ss_dssp             CTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred             CCCCE--EEEECCCCChHHHHHHHHHc-CCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            34444  89999999999999999999 67888898988886541111 11111110000      00001111111000


Q ss_pred             Cccch---hHHHHHHHHHHh-----cCCCCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--
Q 017844          103 GFQDR---YVVQEVIKEMAK-----NRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--  159 (365)
Q Consensus       103 ~~~~~---~~~~~~l~~~~~-----~~~~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--  159 (365)
                      +....   ..+.+.++.+.-     ..+..+|+            ..+++++++||+ ..|+......+++.|.+...  
T Consensus       112 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~  191 (372)
T 1v43_A          112 KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL  191 (372)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence            11110   122333333211     11112332            237899999998 88999999988888877532  


Q ss_pred             ceeEEEEecCCCcccHHHhcccee
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +..+|++|++.+.. ..+.+|+.+
T Consensus       192 g~tvi~vTHd~~~a-~~~adri~v  214 (372)
T 1v43_A          192 KVTTIYVTHDQVEA-MTMGDRIAV  214 (372)
T ss_dssp             TCEEEEEESCHHHH-HHHCSEEEE
T ss_pred             CCEEEEEeCCHHHH-HHhCCEEEE
Confidence            46788888775532 345566543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.88  E-value=1.2e-09  Score=96.28  Aligned_cols=54  Identities=15%  Similarity=0.223  Sum_probs=39.0

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+++++++||+ ..|++..+..+.+.+.+... +..+|++|++.+ ....+.+|+.+
T Consensus       170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~  225 (262)
T 1b0u_A          170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIF  225 (262)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEE
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            47899999998 78999999999999887633 456777776644 33445566543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.84  E-value=6e-09  Score=90.97  Aligned_cols=137  Identities=20%  Similarity=0.245  Sum_probs=76.0

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceecccc---c--cccccceecCCCC
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLELT---T--LSSANHVELSPSD  101 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~---~--~~~~~~~~~~~~~  101 (365)
                      ..|..  +.|.||+|+||||+++++++ +..+..+.+.+++......+..   ....+.+.   .  .+..+.+.+..  
T Consensus        33 ~~Ge~--~~i~G~nGsGKSTLl~~l~G-l~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~--  107 (247)
T 2ff7_A           33 KQGEV--IGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--  107 (247)
T ss_dssp             ETTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTC--
T ss_pred             cCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccC--
Confidence            34444  89999999999999999998 6678888888887543100000   00000000   0  00000111110  


Q ss_pred             cCccchhHHHHHHHH-----HHhcCC-----------CCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844          102 AGFQDRYVVQEVIKE-----MAKNRP-----------IDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus       102 ~~~~~~~~~~~~l~~-----~~~~~~-----------~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                       .......+.+.++.     +....+           ..+|            ...+++++++||+ ..|++.....+.+
T Consensus       108 -~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~  186 (247)
T 2ff7_A          108 -PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR  186 (247)
T ss_dssp             -TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence             00111122222222     111111           1111            1247899999998 8899999999999


Q ss_pred             HHhhhcCceeEEEEecCCCc
Q 017844          153 TMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+...+..+|++|++...
T Consensus       187 ~l~~~~~g~tviivtH~~~~  206 (247)
T 2ff7_A          187 NMHKICKGRTVIIIAHRLST  206 (247)
T ss_dssp             HHHHHHTTSEEEEECSSGGG
T ss_pred             HHHHHcCCCEEEEEeCCHHH
Confidence            98877555677777777553

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.84  E-value=1.2e-09  Score=100.22  Aligned_cols=149  Identities=17%  Similarity=0.271  Sum_probs=80.9

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee-----cCC-Ccceecccccc------ccccceec
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI-----DAG-SRNIDLELTTL------SSANHVEL   97 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~-----~~~-~~~~~~~~~~~------~~~~~~~~   97 (365)
                      ..|..  +.|.||+|+||||++++|++ +..++.|.+.+++..+..     .+. .+...+.+...      +..+.+.+
T Consensus        29 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~  105 (353)
T 1oxx_K           29 ENGER--FGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF  105 (353)
T ss_dssp             CTTCE--EEEECSCHHHHHHHHHHHHT-SSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred             CCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHH
Confidence            34444  89999999999999999999 678888999888866521     110 01111100000      00000111


Q ss_pred             CCCCcCccc---hhHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844           98 SPSDAGFQD---RYVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (365)
Q Consensus        98 ~~~~~~~~~---~~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~  156 (365)
                      .....+...   ...+.+.++.+.-.     .+..+|            ...+++++++||+ ..|+......+++.|.+
T Consensus       106 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  185 (353)
T 1oxx_K          106 PLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE  185 (353)
T ss_dssp             GGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            100001010   11122333322110     111111            1347899999998 88999888888888876


Q ss_pred             hcC--ceeEEEEecCCCcccHHHhccce
Q 017844          157 YSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       157 ~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ...  +..+|++|++.+.. ..+.+|+.
T Consensus       186 l~~~~g~tvi~vTHd~~~~-~~~adri~  212 (353)
T 1oxx_K          186 VQSRLGVTLLVVSHDPADI-FAIADRVG  212 (353)
T ss_dssp             HHHHHCCEEEEEESCHHHH-HHHCSEEE
T ss_pred             HHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence            532  46778888775532 34556654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.84  E-value=2.1e-09  Score=98.16  Aligned_cols=137  Identities=12%  Similarity=0.231  Sum_probs=81.1

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch--
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR--  107 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  107 (365)
                      ..|..  +.|.||+|+||||++++|++ +..++.+.+.+++..+...+..            ...+.+..++...+..  
T Consensus        24 ~~Ge~--~~llGpnGsGKSTLLr~iaG-l~~p~~G~I~~~g~~i~~~~~~------------~r~ig~v~Q~~~l~~~lt   88 (348)
T 3d31_A           24 ESGEY--FVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVTDLSPE------------KHDIAFVYQNYSLFPHMN   88 (348)
T ss_dssp             CTTCE--EEEECCCTHHHHHHHHHHHT-SSCCSEEEEEETTEECTTSCHH------------HHTCEEECTTCCCCTTSC
T ss_pred             cCCCE--EEEECCCCccHHHHHHHHHc-CCCCCCcEEEECCEECCCCchh------------hCcEEEEecCcccCCCCC
Confidence            34444  89999999999999999999 6788888888887654100000            0112222222111111  


Q ss_pred             -----------------hHHHHHHHHHHhc-----CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844          108 -----------------YVVQEVIKEMAKN-----RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus       108 -----------------~~~~~~l~~~~~~-----~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                                       ..+.+.++.+.-.     .+..+|            ...+++++++||+ ..|+......+.+
T Consensus        89 v~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~  168 (348)
T 3d31_A           89 VKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE  168 (348)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence                             1122333222110     000111            2347899999998 8899999999998


Q ss_pred             HHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          153 TMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       153 ~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .|.+...  +..+|++|++.+.. ..+.+|+.
T Consensus       169 ~l~~l~~~~g~tii~vTHd~~~~-~~~adri~  199 (348)
T 3d31_A          169 MLSVLHKKNKLTVLHITHDQTEA-RIMADRIA  199 (348)
T ss_dssp             HHHHHHHHTTCEEEEEESCHHHH-HHHCSEEE
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEE
Confidence            8887632  56788888765432 34555553

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.80  E-value=5.8e-09  Score=92.16  Aligned_cols=142  Identities=20%  Similarity=0.215  Sum_probs=79.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce---------ecCCCcceeccccccccccceecCCCCc-Cc-c
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK---------IDAGSRNIDLELTTLSSANHVELSPSDA-GF-Q  105 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~  105 (365)
                      +.|.||+|+||||+++++++ +..+..|.+.+++....         ..|.......  ...+..+.+.+..... .. .
T Consensus        36 ~~liG~nGsGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~--~~~tv~enl~~~~~~~~~~~~  112 (266)
T 2yz2_A           36 LLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQF--FAERVFDEVAFAVKNFYPDRD  112 (266)
T ss_dssp             EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGC--CCSSHHHHHHHTTTTTCTTSC
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCCcEEEECCEECchHHhhhhEEEEeccchhhc--CCCcHHHHHHHHHHhcCCHHH
Confidence            89999999999999999998 66788888888775431         0111000000  0001111111111000 00 1


Q ss_pred             chhHHHHHHHHHHhc-------CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEE
Q 017844          106 DRYVVQEVIKEMAKN-------RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLI  164 (365)
Q Consensus       106 ~~~~~~~~l~~~~~~-------~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~I  164 (365)
                      ....+.+.++.+.-.       .+..+|            ...+++++++||+ ..|++.....+.+.+.+.. .+..+|
T Consensus       113 ~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii  192 (266)
T 2yz2_A          113 PVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI  192 (266)
T ss_dssp             SHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence            111233444432211       111112            1347899999998 7899999999999998763 355677


Q ss_pred             EEecCCCcccHHHhccce
Q 017844          165 LCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       165 l~t~~~~~l~~~l~sR~~  182 (365)
                      ++|++.+. ...+.+|+.
T Consensus       193 ~vtHd~~~-~~~~~d~v~  209 (266)
T 2yz2_A          193 LISHDIET-VINHVDRVV  209 (266)
T ss_dssp             EECSCCTT-TGGGCSEEE
T ss_pred             EEeCCHHH-HHHhCCEEE
Confidence            77776553 334455554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.80  E-value=1.4e-09  Score=95.03  Aligned_cols=141  Identities=15%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceecc-c-----cccccccceecCCCCcCccch
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDLE-L-----TTLSSANHVELSPSDAGFQDR  107 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~  107 (365)
                      +.|.||+|+||||+++++++ +..+. |.+.+++......+..   ....+. +     ...+..+.+.+.. ... ...
T Consensus        29 ~~liG~NGsGKSTLlk~l~G-l~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~-~~~  104 (249)
T 2qi9_C           29 LHLVGPNGAGKSTLLARMAG-MTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-HDK-TRT  104 (249)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC-SST-TCH
T ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh-ccC-CcH
Confidence            89999999999999999998 56677 8888887543100000   000000 0     0000000111100 000 011


Q ss_pred             hHHHHHHHHHHhcC-----CCCCCC------------CCCce-------EEEEeCC-CCCCHHHHHHHHHHHhhhc-Cce
Q 017844          108 YVVQEVIKEMAKNR-----PIDTKG------------KRGFK-------VLVLNEV-DKLSREAQHSLRRTMEKYS-ASC  161 (365)
Q Consensus       108 ~~~~~~l~~~~~~~-----~~~~~~------------~~~~~-------vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~  161 (365)
                      ..+.+.++.+.-..     +..+|+            ..+++       ++++||+ ..|++..+..+.+.+.+.. .+.
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~  184 (249)
T 2qi9_C          105 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGL  184 (249)
T ss_dssp             HHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCC
Confidence            22333333321110     001111            12456       9999998 7899999999999998764 345


Q ss_pred             eEEEEecCCCcccHHHhccce
Q 017844          162 RLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       162 ~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+|++|++.+ ....+.+|+.
T Consensus       185 tviivtHd~~-~~~~~~d~v~  204 (249)
T 2qi9_C          185 AIVMSSHDLN-HTLRHAHRAW  204 (249)
T ss_dssp             EEEEECSCHH-HHHHHCSEEE
T ss_pred             EEEEEeCCHH-HHHHhCCEEE
Confidence            5666666543 3344555654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.80  E-value=5.4e-09  Score=91.50  Aligned_cols=52  Identities=13%  Similarity=0.117  Sum_probs=38.1

Q ss_pred             CceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHH-hccce
Q 017844          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAI-RSRCL  182 (365)
Q Consensus       130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l-~sR~~  182 (365)
                      +++++++||+ ..|++.....+.+.+.+... +..+|++|++.+. ...+ .+|+.
T Consensus       161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~  215 (250)
T 2d2e_A          161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVH  215 (250)
T ss_dssp             CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEE
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEE
Confidence            6789999998 78999999999999988743 4567777766543 3333 25553

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.79  E-value=9.7e-10  Score=98.72  Aligned_cols=125  Identities=18%  Similarity=0.343  Sum_probs=74.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCcc-----------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ-----------  105 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  105 (365)
                      +.|.||+|+||||+++++++ +..+..|.+.+++.++.. ....  +       ....+.+.+++....           
T Consensus        83 vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~G~~i~~-~~~~--~-------~r~~i~~v~Q~~~lf~~Tv~eNi~~~  151 (306)
T 3nh6_A           83 LALVGPSGAGKSTILRLLFR-FYDISSGCIRIDGQDISQ-VTQA--S-------LRSHIGVVPQDTVLFNDTIADNIRYG  151 (306)
T ss_dssp             EEEESSSCHHHHHHHHHHTT-SSCCSEEEEEETTEETTS-BCHH--H-------HHHTEEEECSSCCCCSEEHHHHHHTT
T ss_pred             EEEECCCCchHHHHHHHHHc-CCCCCCcEEEECCEEccc-CCHH--H-------HhcceEEEecCCccCcccHHHHHHhh
Confidence            89999999999999999998 678888888888865410 0000  0       000122222211111           


Q ss_pred             ----chhHHHHHHHH-----HHhcCC-----------CCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844          106 ----DRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus       106 ----~~~~~~~~l~~-----~~~~~~-----------~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                          ....+.+.++.     +....+           ..+|+            ..+++|+|+||+ ..|++.....+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~  231 (306)
T 3nh6_A          152 RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA  231 (306)
T ss_dssp             STTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence                11112222111     111111           01121            126789999998 8899999999999


Q ss_pred             HHhhhcCceeEEEEecCCCc
Q 017844          153 TMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~~  172 (365)
                      .|.+...+..+|++|++...
T Consensus       232 ~l~~l~~~~Tvi~itH~l~~  251 (306)
T 3nh6_A          232 SLAKVCANRTTIVVAHRLST  251 (306)
T ss_dssp             HHHHHHTTSEEEEECCSHHH
T ss_pred             HHHHHcCCCEEEEEEcChHH
Confidence            99877666677888776553

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.78  E-value=1.9e-08  Score=88.55  Aligned_cols=128  Identities=17%  Similarity=0.276  Sum_probs=76.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccccccee-cCCCCcCc-----------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE-LSPSDAGF-----------  104 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------  104 (365)
                      +.|.||+|+||||+++++++ +. ++.+.+.+++..+...+.             ...+. +.+++...           
T Consensus        33 ~~i~G~NGsGKSTLlk~l~G-l~-p~~G~I~~~g~~~~~~~~-------------~~~i~~~v~Q~~~l~~tv~enl~~~   97 (263)
T 2pjz_A           33 VIILGPNGSGKTTLLRAISG-LL-PYSGNIFINGMEVRKIRN-------------YIRYSTNLPEAYEIGVTVNDIVYLY   97 (263)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SS-CCEEEEEETTEEGGGCSC-------------CTTEEECCGGGSCTTSBHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC-CC-CCCcEEEECCEECcchHH-------------hhheEEEeCCCCccCCcHHHHHHHh
Confidence            89999999999999999999 45 888888888754410000             00111 11111110           


Q ss_pred             -----cchhHHHHHHHHHHhc-C-----CCCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCc
Q 017844          105 -----QDRYVVQEVIKEMAKN-R-----PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus       105 -----~~~~~~~~~l~~~~~~-~-----~~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~  160 (365)
                           .....+.+.++.+.-. .     +..+|+            ..+++++++||+ ..|++.....+.+.+.+... 
T Consensus        98 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-  176 (263)
T 2pjz_A           98 EELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-  176 (263)
T ss_dssp             HHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-
T ss_pred             hhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-
Confidence                 0111223333332111 0     001111            237899999998 88999999999999988754 


Q ss_pred             eeEEEEecCCCcccHHHhc-cce
Q 017844          161 CRLILCCNSSSKVTEAIRS-RCL  182 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~s-R~~  182 (365)
                       .+|++|++.+.+ ..+.+ |+.
T Consensus       177 -tviivtHd~~~~-~~~~d~~i~  197 (263)
T 2pjz_A          177 -EGILVTHELDML-NLYKEYKAY  197 (263)
T ss_dssp             -EEEEEESCGGGG-GGCTTSEEE
T ss_pred             -cEEEEEcCHHHH-HHhcCceEE
Confidence             677777765532 34455 543

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.78  E-value=6.2e-08  Score=108.22  Aligned_cols=77  Identities=18%  Similarity=0.265  Sum_probs=58.1

Q ss_pred             CCCceEEEEeCCCCCCH------HHHHHHHHHHhhhc------------CceeEEEEecCCC-----cccHHHhccceeE
Q 017844          128 KRGFKVLVLNEVDKLSR------EAQHSLRRTMEKYS------------ASCRLILCCNSSS-----KVTEAIRSRCLNI  184 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~~------~~~~~Ll~~le~~~------------~~~~~Il~t~~~~-----~l~~~l~sR~~~i  184 (365)
                      .+++-|++|||++.-..      ...+.|.+.++...            .++.+|.++|.+.     .+.+++.+||.++
T Consensus      1334 ~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi 1413 (2695)
T 4akg_A         1334 DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIL 1413 (2695)
T ss_dssp             SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEE
T ss_pred             CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEE
Confidence            34557999999875432      34566677776311            2466888888774     6899999999999


Q ss_pred             EecCCCHHHHHHHHHHHHHH
Q 017844          185 RINSPTEEQIVKVLEFIAKK  204 (365)
Q Consensus       185 ~~~~~~~~~~~~iL~~~~~~  204 (365)
                      .++.|+.+++..|+..++..
T Consensus      1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A         1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp             ECCCCTTTHHHHHHHHHHHH
T ss_pred             EeCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.75  E-value=8.6e-09  Score=91.23  Aligned_cols=43  Identities=21%  Similarity=0.284  Sum_probs=35.0

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCC
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~  171 (365)
                      .+++++++||+ ..|++.....+.+.|.+...  +..+|++|++.+
T Consensus       173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~  218 (271)
T 2ixe_A          173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS  218 (271)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence            47899999998 78999999999999988643  566777777654

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.73  E-value=1.8e-07  Score=87.47  Aligned_cols=170  Identities=13%  Similarity=0.124  Sum_probs=101.2

Q ss_pred             cccCHHHHHHHHHHHHcCC-----CCeEEEECCCCCcHHHHHHHH-HHHhcCCCCccceeccccceecCCCcceeccccc
Q 017844           15 VIVHQDIAQNLKKLVTEQD-----CPHLLFYGPPGSGKKTLIMAL-LRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTT   88 (365)
Q Consensus        15 iig~~~~~~~l~~~l~~~~-----~~~lll~Gp~G~GKTtla~~l-a~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   88 (365)
                      ++||+.++..+.-.+-+|.     -.|+|+.|+||+ ||++++.+ ++ +...   .++..+..    +..  ..     
T Consensus       215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~-i~pR---~~ft~g~~----ss~--~g-----  278 (506)
T 3f8t_A          215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDH-LAPR---GVYVDLRR----TEL--TD-----  278 (506)
T ss_dssp             STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHH-TCSS---EEEEEGGG----CCH--HH-----
T ss_pred             cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHH-hCCC---eEEecCCC----CCc--cC-----
Confidence            7899999888887776653     126999999999 99999999 66 3221   11111100    000  00     


Q ss_pred             cccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---------cC
Q 017844           89 LSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---------SA  159 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---------~~  159 (365)
                      +... ..  .+.......+    .    +.         .....++++||++.+++..+.+|++.||+.         +.
T Consensus       279 Lt~s-~r--~~tG~~~~~G----~----l~---------LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lpa  338 (506)
T 3f8t_A          279 LTAV-LK--EDRGWALRAG----A----AV---------LADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNA  338 (506)
T ss_dssp             HSEE-EE--ESSSEEEEEC----H----HH---------HTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEEC
T ss_pred             ceEE-EE--cCCCcccCCC----e----eE---------EcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCC
Confidence            0000 00  0000000000    0    00         112369999999999999999999999963         45


Q ss_pred             ceeEEEEecCCC-----------cccHHHhcccee--EEecC-------------CCHHHHHHHHHHHH-HHcCCCCCHH
Q 017844          160 SCRLILCCNSSS-----------KVTEAIRSRCLN--IRINS-------------PTEEQIVKVLEFIA-KKEGLQLPSG  212 (365)
Q Consensus       160 ~~~~Il~t~~~~-----------~l~~~l~sR~~~--i~~~~-------------~~~~~~~~iL~~~~-~~~~~~i~~~  212 (365)
                      .+.+|.++|...           .+++++.|||..  +....             .+.+++.+++...- ..-...++++
T Consensus       339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~e  418 (506)
T 3f8t_A          339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEE  418 (506)
T ss_dssp             CCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHH
T ss_pred             CeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHH
Confidence            566777777543           688999999942  22232             33444555554332 1225678888


Q ss_pred             HHHHHHHH
Q 017844          213 FATRLAEK  220 (365)
Q Consensus       213 ~~~~i~~~  220 (365)
                      +.++|++.
T Consensus       419 a~~yI~~~  426 (506)
T 3f8t_A          419 ARKRLEHW  426 (506)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.70  E-value=1.2e-08  Score=89.23  Aligned_cols=55  Identities=15%  Similarity=0.241  Sum_probs=39.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC--ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|++.....+.+.+.+...  +..+|++|++.+. ...+.+|+.++
T Consensus       145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~d~v~~l  202 (253)
T 2nq2_C          145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLL  202 (253)
T ss_dssp             TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH-HHHHCSEEEEE
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEE
Confidence            47899999998 78999999999999987643  4567777766442 33455555443

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.69  E-value=1e-08  Score=95.04  Aligned_cols=138  Identities=21%  Similarity=0.310  Sum_probs=79.7

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcC-----
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG-----  103 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  103 (365)
                      +..|..  +.|.||+|+||||++++|++. .. ..+.+.+++..+...+....          ...+.+..++..     
T Consensus        44 i~~Ge~--~~llGpsGsGKSTLLr~iaGl-~~-~~G~I~i~G~~i~~~~~~~~----------rr~ig~v~Q~~~lf~~t  109 (390)
T 3gd7_A           44 ISPGQR--VGLLGRTGSGKSTLLSAFLRL-LN-TEGEIQIDGVSWDSITLEQW----------RKAFGVIPQKVFIFSGT  109 (390)
T ss_dssp             ECTTCE--EEEEESTTSSHHHHHHHHHTC-SE-EEEEEEESSCBTTSSCHHHH----------HHTEEEESCCCCCCSEE
T ss_pred             EcCCCE--EEEECCCCChHHHHHHHHhCC-CC-CCeEEEECCEECCcCChHHH----------hCCEEEEcCCcccCccC
Confidence            344554  899999999999999999994 44 66888888765411110000          001111111110     


Q ss_pred             ---------ccchhHHHHHHHH-----HHhcCCCC-----------CCC------------CCCceEEEEeCC-CCCCHH
Q 017844          104 ---------FQDRYVVQEVIKE-----MAKNRPID-----------TKG------------KRGFKVLVLNEV-DKLSRE  145 (365)
Q Consensus       104 ---------~~~~~~~~~~l~~-----~~~~~~~~-----------~~~------------~~~~~vliiDE~-~~L~~~  145 (365)
                               ......+.+.++.     +....+..           +|+            ..+++++++||+ ..|+..
T Consensus       110 v~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~  189 (390)
T 3gd7_A          110 FRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV  189 (390)
T ss_dssp             HHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHH
T ss_pred             HHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence                     1111122233222     11212211           221            137899999998 889999


Q ss_pred             HHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          146 AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       146 ~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ....+.+.|.+......+|+++++.+.+  ...+|+.
T Consensus       190 ~~~~l~~~l~~~~~~~tvi~vtHd~e~~--~~aDri~  224 (390)
T 3gd7_A          190 TYQIIRRTLKQAFADCTVILCEARIEAM--LECDQFL  224 (390)
T ss_dssp             HHHHHHHHHHTTTTTSCEEEECSSSGGG--TTCSEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEEEcCHHHH--HhCCEEE
Confidence            9999999998765567788888876533  2355553

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.68  E-value=2.6e-08  Score=87.60  Aligned_cols=43  Identities=16%  Similarity=0.322  Sum_probs=35.3

Q ss_pred             CceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      +++++++||+ ..|++.....+.+.+.+...+..+|++|++...
T Consensus       173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~  216 (260)
T 2ghi_A          173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST  216 (260)
T ss_dssp             CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence            6789999998 789999999999999877556677777777654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.68  E-value=1.6e-08  Score=89.24  Aligned_cols=42  Identities=12%  Similarity=0.165  Sum_probs=33.8

Q ss_pred             CceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCC
Q 017844          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSS  171 (365)
Q Consensus       130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~  171 (365)
                      +++++++||+ ..|++.....+.+.+.+... +..+|++|++.+
T Consensus       182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~  225 (267)
T 2zu0_C          182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR  225 (267)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence            7889999998 78999999999999988743 456666666644

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.66  E-value=1.8e-08  Score=87.72  Aligned_cols=36  Identities=31%  Similarity=0.650  Sum_probs=31.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      +.|.||+|+||||+++++++ +..+..+.+.+++...
T Consensus        31 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~   66 (243)
T 1mv5_A           31 IAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPI   66 (243)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSBSCEEETTEES
T ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEEh
Confidence            89999999999999999998 6678888888887554

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.65  E-value=7.5e-09  Score=91.93  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=33.7

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      ..|..  +.|.||+|+|||||++++++ +..++.+.+.+++..+
T Consensus        45 ~~Ge~--~~liG~NGsGKSTLlk~l~G-l~~p~~G~I~~~g~~~   85 (279)
T 2ihy_A           45 AKGDK--WILYGLNGAGKTTLLNILNA-YEPATSGTVNLFGKMP   85 (279)
T ss_dssp             ETTCE--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTBCC
T ss_pred             cCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCCeEEEECCEEc
Confidence            34444  89999999999999999998 6678888888887554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.62  E-value=3.6e-08  Score=96.89  Aligned_cols=147  Identities=16%  Similarity=0.285  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCC---cceec-cccc----cccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS---RNIDL-ELTT----LSSA   92 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~-~~~~----~~~~   92 (365)
                      +++.+.-.+..|+.  +.+.||+|+||||+++.+++ +..++.|.+.+++.+....+..   +...+ .+..    .+..
T Consensus       358 ~l~~i~l~i~~G~~--~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~  434 (582)
T 3b5x_A          358 ALSHVSFSIPQGKT--VALVGRSGSGKSTIANLFTR-FYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA  434 (582)
T ss_pred             ccccceEEECCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHH
Confidence            44444444555555  89999999999999999999 6788889888888654110000   00000 0000    0000


Q ss_pred             cceecCCCCcCccchhHHHHHHHHH-----HhcCC-----------CCCCC------------CCCceEEEEeCC-CCCC
Q 017844           93 NHVELSPSDAGFQDRYVVQEVIKEM-----AKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLS  143 (365)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-----------~~~~~------------~~~~~vliiDE~-~~L~  143 (365)
                      +.+.+...  ...+...+.+.++..     ....+           ..+|+            ..+++++++||+ ..|+
T Consensus       435 eni~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD  512 (582)
T 3b5x_A          435 NNIAYAAE--GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD  512 (582)
T ss_pred             HHHhccCC--CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence            01111100  001111222222211     11111           11121            237899999999 7899


Q ss_pred             HHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          144 REAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       144 ~~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      +.....+.+.+.+...+..+|++|++.+.
T Consensus       513 ~~~~~~i~~~l~~~~~~~tvi~itH~~~~  541 (582)
T 3b5x_A          513 TESERAIQAALDELQKNKTVLVIAHRLST  541 (582)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence            99999999999887656678888887653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.58  E-value=2.5e-08  Score=86.53  Aligned_cols=51  Identities=8%  Similarity=0.060  Sum_probs=37.4

Q ss_pred             CceEEEEeCC-CCCCHHHHHHHHHHHh---hhcCceeEEEEecCCCcccHHHhccce
Q 017844          130 GFKVLVLNEV-DKLSREAQHSLRRTME---KYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       130 ~~~vliiDE~-~~L~~~~~~~Ll~~le---~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      +++++++||+ ..|++.....+.+.+.   +...+..+|++|++.+.+ . ..+|+.
T Consensus       145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~-~~d~v~  199 (237)
T 2cbz_A          145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-P-QVDVII  199 (237)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-G-GSSEEE
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-H-hCCEEE
Confidence            6789999998 7899999999999884   333456778888776643 2 355553

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.58  E-value=2.2e-08  Score=98.36  Aligned_cols=126  Identities=21%  Similarity=0.276  Sum_probs=74.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc------------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------  104 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  104 (365)
                      +.+.||+|+||||+++++++ +..+..|.+.+++.+....+...          -...+.+.+++...            
T Consensus       370 ~~ivG~sGsGKSTll~~l~g-~~~p~~G~i~~~g~~~~~~~~~~----------~r~~i~~v~Q~~~l~~~tv~eni~~~  438 (578)
T 4a82_A          370 VAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIKDFLTGS----------LRNQIGLVQQDNILFSDTVKENILLG  438 (578)
T ss_dssp             EEEECSTTSSHHHHHTTTTT-SSCCSEEEEEETTEEGGGSCHHH----------HHHTEEEECSSCCCCSSBHHHHHGGG
T ss_pred             EEEECCCCChHHHHHHHHhc-CCCCCCcEEEECCEEhhhCCHHH----------HhhheEEEeCCCccCcccHHHHHhcC
Confidence            89999999999999999998 67888888888886541100000          00011111111111            


Q ss_pred             ---cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844          105 ---QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus       105 ---~~~~~~~~~l~~~-----~~~~~~-----------~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                         .....+.+..+..     ....+.           .+|+            ..+++++++||+ ..|++.....+.+
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~  518 (578)
T 4a82_A          439 RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE  518 (578)
T ss_dssp             CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence               0111121221111     111110           1111            126789999999 8899999988999


Q ss_pred             HHhhhcCceeEEEEecCCCcc
Q 017844          153 TMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~~l  173 (365)
                      .+.+...+..+|++|++.+.+
T Consensus       519 ~l~~~~~~~t~i~itH~l~~~  539 (578)
T 4a82_A          519 ALDVLSKDRTTLIVAHRLSTI  539 (578)
T ss_dssp             HHHHHTTTSEEEEECSSGGGT
T ss_pred             HHHHHcCCCEEEEEecCHHHH
Confidence            888776667788888877643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.57  E-value=2.6e-08  Score=85.89  Aligned_cols=43  Identities=14%  Similarity=0.136  Sum_probs=32.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHH-HhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~-le~~~~~~~~Il~t~~~~  171 (365)
                      .+++++++||+ ..|++.....+.+. +.+...+..+|++|++.+
T Consensus       147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~  191 (229)
T 2pze_A          147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME  191 (229)
T ss_dssp             SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred             cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence            36789999998 78999999999886 455444566777777654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.56  E-value=4.3e-08  Score=96.40  Aligned_cols=125  Identities=17%  Similarity=0.284  Sum_probs=74.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcC-------------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG-------------  103 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  103 (365)
                      +.+.||+|+||||+++.+++ +..++.|.+.+++.+....+...   .       ...+.+.+++..             
T Consensus       372 ~~ivG~sGsGKSTLl~~l~g-~~~p~~G~i~~~g~~~~~~~~~~---~-------~~~i~~v~Q~~~l~~~tv~eni~~~  440 (582)
T 3b60_A          372 VALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLREYTLAS---L-------RNQVALVSQNVHLFNDTVANNIAYA  440 (582)
T ss_dssp             EEEEECTTSSHHHHHHHHTT-TTCCSEEEEEETTEETTTBCHHH---H-------HHTEEEECSSCCCCSSBHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHhh-ccCCCCCeEEECCEEccccCHHH---H-------HhhCeEEccCCcCCCCCHHHHHhcc
Confidence            89999999999999999998 67888888888875541000000   0       001111111110             


Q ss_pred             ---ccchhHHHHHHHH-----HHhcCC-----------CCCCC------------CCCceEEEEeCC-CCCCHHHHHHHH
Q 017844          104 ---FQDRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (365)
Q Consensus       104 ---~~~~~~~~~~l~~-----~~~~~~-----------~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll  151 (365)
                         ..+...+.+.++.     +....+           ..+|+            ..+++++++||+ ..|++.....+.
T Consensus       441 ~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~  520 (582)
T 3b60_A          441 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ  520 (582)
T ss_dssp             TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHH
Confidence               0111122222211     111111           11121            126789999999 889999999999


Q ss_pred             HHHhhhcCceeEEEEecCCCc
Q 017844          152 RTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       152 ~~le~~~~~~~~Il~t~~~~~  172 (365)
                      +.+.+...+..+|++|++.+.
T Consensus       521 ~~l~~~~~~~tvi~itH~~~~  541 (582)
T 3b60_A          521 AALDELQKNRTSLVIAHRLST  541 (582)
T ss_dssp             HHHHHHHTTSEEEEECSCGGG
T ss_pred             HHHHHHhCCCEEEEEeccHHH
Confidence            999887656678888887654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.54  E-value=8.1e-08  Score=81.43  Aligned_cols=50  Identities=32%  Similarity=0.446  Sum_probs=35.9

Q ss_pred             cccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccc
Q 017844            5 DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKV   66 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i   66 (365)
                      ...+|++|.    +..+++.    +..|..  +.|.||+|+||||+++++++.  .++.+.+
T Consensus         3 ~~i~pk~~g----~~~~l~~----i~~Ge~--~~liG~nGsGKSTLl~~l~Gl--~p~~G~I   52 (208)
T 3b85_A            3 AVIRPKTLG----QKHYVDA----IDTNTI--VFGLGPAGSGKTYLAMAKAVQ--ALQSKQV   52 (208)
T ss_dssp             -CCCCCSHH----HHHHHHH----HHHCSE--EEEECCTTSSTTHHHHHHHHH--HHHTTSC
T ss_pred             CccccCCHh----HHHHHHh----ccCCCE--EEEECCCCCCHHHHHHHHhcC--CCcCCee
Confidence            356788763    3444444    356665  899999999999999999994  5555555

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.53  E-value=2.8e-08  Score=97.97  Aligned_cols=45  Identities=18%  Similarity=0.295  Sum_probs=37.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l  173 (365)
                      .+++++++||+ ..|++.....+.+.+.+...+..+|++|++.+.+
T Consensus       508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~  553 (598)
T 3qf4_B          508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTI  553 (598)
T ss_dssp             TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHH
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence            36789999999 8899999999999888776677788888887743

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.51  E-value=2.4e-08  Score=98.19  Aligned_cols=125  Identities=18%  Similarity=0.321  Sum_probs=75.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc------------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------  104 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  104 (365)
                      +.+.||+|+||||+++++++ +..+..|.+.+++.+....+...          -...+.+.+++...            
T Consensus       372 ~~ivG~sGsGKSTll~~l~g-~~~~~~G~i~i~g~~i~~~~~~~----------~r~~i~~v~Q~~~lf~~tv~eni~~~  440 (587)
T 3qf4_A          372 VAVLGETGSGKSTLMNLIPR-LIDPERGRVEVDELDVRTVKLKD----------LRGHISAVPQETVLFSGTIKENLKWG  440 (587)
T ss_dssp             EEEECSSSSSHHHHHHTTTT-SSCCSEEEEEESSSBGGGBCHHH----------HHHHEEEECSSCCCCSEEHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHhC-CccCCCcEEEECCEEcccCCHHH----------HHhheEEECCCCcCcCccHHHHHhcc
Confidence            89999999999999999998 67888888888886551100000          00111222221111            


Q ss_pred             ---cchhHHHHHHHH-----HHhcCC-----------CCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844          105 ---QDRYVVQEVIKE-----MAKNRP-----------IDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus       105 ---~~~~~~~~~l~~-----~~~~~~-----------~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                         .....+.+..+.     .....+           ..+|+            ..+++++++||+ ..|++.....+.+
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~  520 (587)
T 3qf4_A          441 REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD  520 (587)
T ss_dssp             CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence               111111111111     110010           01111            136799999999 7899999999999


Q ss_pred             HHhhhcCceeEEEEecCCCc
Q 017844          153 TMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+...+..+|++|++.+.
T Consensus       521 ~l~~~~~~~tvi~itH~l~~  540 (587)
T 3qf4_A          521 GLKRYTKGCTTFIITQKIPT  540 (587)
T ss_dssp             HHHHHSTTCEEEEEESCHHH
T ss_pred             HHHHhCCCCEEEEEecChHH
Confidence            99887667788888887653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.46  E-value=7.1e-06  Score=92.05  Aligned_cols=167  Identities=16%  Similarity=0.215  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCC
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSP   99 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (365)
                      .....+..++..+..  .++.||+|||||++++.+|+.+..+-   +.++|                             
T Consensus       633 r~~~tl~~Al~~~~~--~~l~GpaGtGKTe~vk~LA~~lg~~~---v~~nc-----------------------------  678 (2695)
T 4akg_A          633 IGFATLTDSLHQKYG--GCFFGPAGTGKTETVKAFGQNLGRVV---VVFNC-----------------------------  678 (2695)
T ss_dssp             HHHHHHHHHHHTTCE--EEEECCTTSCHHHHHHHHHHTTTCCC---EEEET-----------------------------
T ss_pred             HHHHHHHHHHHhCCC--CcccCCCCCCcHHHHHHHHHHhCCcE---EEEEC-----------------------------
Confidence            344556666665544  78999999999999999999763221   11221                             


Q ss_pred             CCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHH-------HHHhhh-------------cC
Q 017844          100 SDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLR-------RTMEKY-------------SA  159 (365)
Q Consensus       100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll-------~~le~~-------------~~  159 (365)
                      .+.-  +...+..++..++...          ..+++||++.++++....+.       ..+.+.             .+
T Consensus       679 ~e~l--d~~~lg~~~~g~~~~G----------aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~  746 (2695)
T 4akg_A          679 DDSF--DYQVLSRLLVGITQIG----------AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSP  746 (2695)
T ss_dssp             TSSC--CHHHHHHHHHHHHHHT----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCT
T ss_pred             CCCC--ChhHhhHHHHHHHhcC----------CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCC
Confidence            1110  1112334444444321          58999999999998877663       333221             12


Q ss_pred             ceeEEEEec----CCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cC
Q 017844          160 SCRLILCCN----SSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK-------------SN  222 (365)
Q Consensus       160 ~~~~Il~t~----~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~-------------~~  222 (365)
                      +..++++.|    ....+++++++||..+.+..|+.+.+.+++-.   ..|+...+.....++..             .+
T Consensus       747 ~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hyd  823 (2695)
T 4akg_A          747 HTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYH  823 (2695)
T ss_dssp             TCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCC
T ss_pred             CceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCccc
Confidence            344566665    23469999999999999999999999888653   23554444444444331             12


Q ss_pred             CCHHHHHHHHHHH
Q 017844          223 RSLRRAILSFETC  235 (365)
Q Consensus       223 g~lr~ai~~l~~~  235 (365)
                      -.+|.....|..+
T Consensus       824 fglRalksvL~~a  836 (2695)
T 4akg_A          824 FGLRTLKGVLRNC  836 (2695)
T ss_dssp             CSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH
Confidence            4677777776643

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.45  E-value=1.7e-07  Score=83.49  Aligned_cols=43  Identities=14%  Similarity=0.136  Sum_probs=32.7

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHH-HhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRT-MEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~-le~~~~~~~~Il~t~~~~  171 (365)
                      .+++++++||+ ..|++.....+.+. +.+...+..+|++|++.+
T Consensus       176 ~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~  220 (290)
T 2bbs_A          176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME  220 (290)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred             CCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence            36789999998 78999999999886 444444566777777654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.43  E-value=2.1e-07  Score=90.15  Aligned_cols=144  Identities=16%  Similarity=0.184  Sum_probs=75.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (365)
                      +.|.||+|+||||+++++++ +..++.+.+.+.+..+...|.......   ..+..+.+..............+.+.++.
T Consensus       297 ~~i~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~~~~i~~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~l~~  372 (538)
T 3ozx_A          297 IGILGPNGIGKTTFARILVG-EITADEGSVTPEKQILSYKPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKR  372 (538)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSBCCEESSCCCEEEECSSCCCCC---SSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCcEEEECCeeeEeechhccccc---CCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence            88999999999999999998 667777777665544322222110000   00000000000000000000011111111


Q ss_pred             HHh-----cCCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHH
Q 017844          117 MAK-----NRPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEA  176 (365)
Q Consensus       117 ~~~-----~~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~  176 (365)
                      +.-     ..+..+|            ...+++++++||+ ..|+...+..+.+.|.+..  .+..+|+++++.+ ....
T Consensus       373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~  451 (538)
T 3ozx_A          373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDY  451 (538)
T ss_dssp             TTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHH
T ss_pred             cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHH
Confidence            000     0000111            1236789999999 8899999999999988763  2456677776644 3455


Q ss_pred             HhccceeEE
Q 017844          177 IRSRCLNIR  185 (365)
Q Consensus       177 l~sR~~~i~  185 (365)
                      +.+|+.++.
T Consensus       452 ~aDri~vl~  460 (538)
T 3ozx_A          452 IADRIIVFK  460 (538)
T ss_dssp             HCSEEEEEE
T ss_pred             hCCEEEEEe
Confidence            667765544

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.42  E-value=2.8e-06  Score=83.63  Aligned_cols=201  Identities=13%  Similarity=0.126  Sum_probs=103.4

Q ss_pred             CCCCCCccccCHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHh---cCCC-CccceeccccceecCCCcc
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQV---FGPG-AEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKTtla~~la~~l---~~~~-~~~i~~~~~~~~~~~~~~~   81 (365)
                      .|.....++|.+..++.|..++...  ..+.++|+||+|+||||+|..+++..   .... .+...++...     ... 
T Consensus       119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~-----~~~-  192 (591)
T 1z6t_A          119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDK-  192 (591)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES-----CCH-
T ss_pred             CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC-----Cch-
Confidence            3667788999999999999998742  23339999999999999999886421   0000 0111111100     000 


Q ss_pred             eecccccccc-ccceec--CCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           82 IDLELTTLSS-ANHVEL--SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        82 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                      .... ..+.. ...+..  ..............+.+......       ..++-++|+|+++.  ..       .++..+
T Consensus       193 ~~~~-~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~LLVLDdv~~--~~-------~l~~l~  255 (591)
T 1z6t_A          193 SGLL-MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR-------KHPRSLLILDDVWD--SW-------VLKAFD  255 (591)
T ss_dssp             HHHH-HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH-------TCTTCEEEEEEECC--HH-------HHHTTC
T ss_pred             HHHH-HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc-------CCCCeEEEEeCCCC--HH-------HHHHhc
Confidence            0000 00000 000000  00000111111122222222211       11346999999974  21       233345


Q ss_pred             CceeEEEEecCCCcccHHHhccceeEE-ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRCLNIR-INSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~-~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      .+..+|+||.+..-. .........+. ..+++.++..+++...+... ..-.++....|++.++|.+--+..+..
T Consensus       256 ~~~~ilvTsR~~~~~-~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~  329 (591)
T 1z6t_A          256 SQCQILLTTRDKSVT-DSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGA  329 (591)
T ss_dssp             SSCEEEEEESCGGGG-TTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHH-HhcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHH
Confidence            677788877664421 11111112222 25899999999998876431 111245788899999998865544433

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.36  E-value=5.6e-07  Score=87.31  Aligned_cols=56  Identities=13%  Similarity=0.211  Sum_probs=40.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeEE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIR  185 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i~  185 (365)
                      .+++++++||+ ..|+...+..+.+.|.+..  ....+|++|++.+ ....+.+|+.++.
T Consensus       418 ~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~  476 (538)
T 1yqt_A          418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFE  476 (538)
T ss_dssp             SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence            46789999999 7899999999999988763  2456777776644 3345566665443

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.36  E-value=2.9e-07  Score=76.49  Aligned_cols=50  Identities=8%  Similarity=0.089  Sum_probs=34.8

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC------cccHHHhccce
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAIRSRCL  182 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~------~l~~~l~sR~~  182 (365)
                      ++++++|||++.++++....|....++   +..+|+++...+      ...+.+.+++.
T Consensus        76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad  131 (184)
T 2orw_A           76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLAD  131 (184)
T ss_dssp             TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhh
Confidence            568999999999987766666666654   566777766443      34456666663

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.35  E-value=4.4e-06  Score=94.34  Aligned_cols=76  Identities=13%  Similarity=0.253  Sum_probs=56.8

Q ss_pred             CCceEEEEeCCCCCCH------HHHHHHHHHHhhh------------cCceeEEEEecCCC-----cccHHHhccceeEE
Q 017844          129 RGFKVLVLNEVDKLSR------EAQHSLRRTMEKY------------SASCRLILCCNSSS-----KVTEAIRSRCLNIR  185 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~------~~~~~Ll~~le~~------------~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~  185 (365)
                      +++-|++|||++.-..      ...+.|+..++..            ..++.+|.++|.+.     .+.+++.+||.++.
T Consensus      1373 Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A         1373 GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp             TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred             CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence            5667999999975443      2556677777631            13456777777653     48899999999999


Q ss_pred             ecCCCHHHHHHHHHHHHHH
Q 017844          186 INSPTEEQIVKVLEFIAKK  204 (365)
Q Consensus       186 ~~~~~~~~~~~iL~~~~~~  204 (365)
                      ++.|+.+++..|...+...
T Consensus      1453 i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A         1453 VDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp             CCCCCHHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHH
Confidence            9999999999998776543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.34  E-value=1.8e-06  Score=78.58  Aligned_cols=48  Identities=19%  Similarity=0.334  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      +.+.+...+..|..  +++.||+|+||||+++++++ +..+..+.+.+++.
T Consensus       160 ~l~~l~~~i~~g~~--v~i~G~~GsGKTTll~~l~g-~~~~~~g~i~i~~~  207 (330)
T 2pt7_A          160 AISAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIME-FIPKEERIISIEDT  207 (330)
T ss_dssp             HHHHHHHHHHHTCC--EEEEESTTSCHHHHHHHGGG-GSCTTSCEEEEESS
T ss_pred             HHhhhhhhccCCCE--EEEECCCCCCHHHHHHHHhC-CCcCCCcEEEECCe
Confidence            66777777877876  99999999999999999998 45666677776653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.34  E-value=6.1e-07  Score=88.10  Aligned_cols=56  Identities=13%  Similarity=0.211  Sum_probs=40.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeEE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNIR  185 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i~  185 (365)
                      .+++++++||+ ..|+...+..+.+.|.+..  .+..+|+++++.. ....+.+|+.++.
T Consensus       488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~  546 (607)
T 3bk7_A          488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFE  546 (607)
T ss_dssp             SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred             hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc
Confidence            47789999998 7899999999999998763  3456777766544 3445566665543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.30  E-value=1.2e-06  Score=84.93  Aligned_cols=55  Identities=11%  Similarity=0.149  Sum_probs=40.5

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|++.....+++.|++... +..+|+++++.. ....+.+|+.++
T Consensus       175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl  231 (538)
T 1yqt_A          175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV  231 (538)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            36799999998 88999999888888887633 566777777644 445566666544

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.29  E-value=1.1e-06  Score=73.88  Aligned_cols=60  Identities=8%  Similarity=0.117  Sum_probs=42.1

Q ss_pred             CceEEEEeCCCCCC--H-HHH--HHHHHHHhhhc-CceeEEEEecCCCcccHHHhccce-eEEecCC
Q 017844          130 GFKVLVLNEVDKLS--R-EAQ--HSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCL-NIRINSP  189 (365)
Q Consensus       130 ~~~vliiDE~~~L~--~-~~~--~~Ll~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~  189 (365)
                      +..|+||||++.+.  . +..  ..++..++... ....+|++++.+..+..++++|+. .+++.++
T Consensus        87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~  153 (199)
T 2r2a_A           87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN  153 (199)
T ss_dssp             TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred             CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence            35799999999872  1 111  13555555543 346789999998899999999985 6677654

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.29  E-value=7.2e-06  Score=80.02  Aligned_cols=187  Identities=15%  Similarity=0.196  Sum_probs=95.6

Q ss_pred             ccCHHHHHHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHHH---hcCCCCccceeccccceecCCCcc-eeccccc
Q 017844           16 IVHQDIAQNLKKLVTEQ---DCPHLLFYGPPGSGKKTLIMALLRQ---VFGPGAEKVKVENKTWKIDAGSRN-IDLELTT   88 (365)
Q Consensus        16 ig~~~~~~~l~~~l~~~---~~~~lll~Gp~G~GKTtla~~la~~---l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~   88 (365)
                      +|.+..++.+..++..+   ....+.|+|+.|+||||+|+.+++.   -....     +++..| .+..... .+.  ..
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~-----F~~~~w-v~vs~~~~~~~--~~  202 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGIN-----YDSIVW-LKDSGTAPKST--FD  202 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTT-----BSEEEE-EECCCCSTTHH--HH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhcc-----CCcEEE-EEECCCCCCCH--HH
Confidence            49999999999988654   2333899999999999999999862   11111     112222 0000000 000  00


Q ss_pred             cccccce-ecCCC-------CcCccchhHHHHHHHHHHhcCCCCCCCCCC-ceEEEEeCCCCCCHHHHHHHHHHHhhhcC
Q 017844           89 LSSANHV-ELSPS-------DAGFQDRYVVQEVIKEMAKNRPIDTKGKRG-FKVLVLNEVDKLSREAQHSLRRTMEKYSA  159 (365)
Q Consensus        89 ~~~~~~~-~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~vliiDE~~~L~~~~~~~Ll~~le~~~~  159 (365)
                      .. ...+ .+...       .....+.......+....         .++ +-++|+|++...  +.. .    +... .
T Consensus       203 ~~-~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L---------~~~kr~LlVLDdv~~~--~~~-~----~~~~-~  264 (549)
T 2a5y_B          203 LF-TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL---------IDRPNTLFVFDDVVQE--ETI-R----WAQE-L  264 (549)
T ss_dssp             HH-HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH---------TTSTTEEEEEEEECCH--HHH-H----HHHH-T
T ss_pred             HH-HHHHHHHhcCcccccccccccccHHHHHHHHHHHH---------cCCCcEEEEEECCCCc--hhh-c----cccc-C
Confidence            00 0000 00000       000000011122222221         222 579999999752  211 1    1111 4


Q ss_pred             ceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Q 017844          160 SCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLRRAI  229 (365)
Q Consensus       160 ~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~-~i~~~~~~~i~~~~~g~lr~ai  229 (365)
                      +.++|+||.+.. +..........+.+++++.++..+++.+.+..... .-.++....|++.++|.+-.+.
T Consensus       265 gs~ilvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~  334 (549)
T 2a5y_B          265 RLRCLVTTRDVE-ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM  334 (549)
T ss_dssp             TCEEEEEESBGG-GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCEEEEEcCCHH-HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence            667777776543 22211112246899999999999999876432211 1113467888999988875443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.28  E-value=3.6e-06  Score=70.04  Aligned_cols=69  Identities=17%  Similarity=0.319  Sum_probs=41.4

Q ss_pred             CCCceEEEEeCCCCC---CHHHHHHHHHHHhhhcCceeEE--EEe-cCC-CcccHHHhcc--ceeEEecCCCHHHHHHHH
Q 017844          128 KRGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLI--LCC-NSS-SKVTEAIRSR--CLNIRINSPTEEQIVKVL  198 (365)
Q Consensus       128 ~~~~~vliiDE~~~L---~~~~~~~Ll~~le~~~~~~~~I--l~t-~~~-~~l~~~l~sR--~~~i~~~~~~~~~~~~iL  198 (365)
                      ..+++|+|+||+..+   +......+.++++..  ...++  ++. ++. ..+.+.+..+  +.++.+..-+.+.+..-+
T Consensus       103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~--~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i  180 (189)
T 2i3b_A          103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP--GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI  180 (189)
T ss_dssp             SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS--SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred             ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC--CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence            456789999997554   556677777777753  22232  122 222 2456666654  467888776655555444

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.28  E-value=6.2e-06  Score=70.35  Aligned_cols=111  Identities=13%  Similarity=0.136  Sum_probs=56.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (365)
                      ++++||+|+||||++..++..+.........+.....      .. ..  ..+  ..++.+.........   ..++...
T Consensus        15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d------~r-~~--~~i--~srlG~~~~~~~~~~---~~~i~~~   80 (223)
T 2b8t_A           15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID------TR-SI--RNI--QSRTGTSLPSVEVES---APEILNY   80 (223)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC------GG-GC--SSC--CCCCCCSSCCEEESS---THHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC------ch-HH--HHH--HHhcCCCccccccCC---HHHHHHH
Confidence            8999999999999998887766443322222211000      00 00  000  011111111101111   1233333


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844          117 MAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (365)
Q Consensus       117 ~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~  169 (365)
                      +....     ...++++|+|||++.++.+....+ ..+.+.  ++.+|++...
T Consensus        81 i~~~~-----~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~~--gi~Vil~Gl~  125 (223)
T 2b8t_A           81 IMSNS-----FNDETKVIGIDEVQFFDDRICEVA-NILAEN--GFVVIISGLD  125 (223)
T ss_dssp             HHSTT-----SCTTCCEEEECSGGGSCTHHHHHH-HHHHHT--TCEEEEECCS
T ss_pred             HHHHh-----hCCCCCEEEEecCccCcHHHHHHH-HHHHhC--CCeEEEEecc
Confidence            33211     134568999999999987755544 334332  6778888773

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.27  E-value=2.6e-06  Score=74.81  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=35.7

Q ss_pred             CCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      +.+++++--. .+++.+.  +..|..  ++|.||+|+||||+++++++.+.....+.+.+.+.
T Consensus         5 ~~~l~~l~~~-~vl~~i~--i~~g~~--v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~   62 (261)
T 2eyu_A            5 IPEFKKLGLP-DKVLELC--HRKMGL--ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED   62 (261)
T ss_dssp             -CCGGGSSCC-THHHHGG--GCSSEE--EEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CCChHHCCCH-HHHHHHh--hCCCCE--EEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence            3445555322 3444443  333333  99999999999999999999653222455555443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.26  E-value=5e-07  Score=74.11  Aligned_cols=44  Identities=11%  Similarity=0.131  Sum_probs=30.3

Q ss_pred             CCCceEEEEeCC-CCCCHH----------------HHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844          128 KRGFKVLVLNEV-DKLSRE----------------AQHSLRRTMEKYS-ASCRLILCCNSSS  171 (365)
Q Consensus       128 ~~~~~vliiDE~-~~L~~~----------------~~~~Ll~~le~~~-~~~~~Il~t~~~~  171 (365)
                      ..+++++++||+ ..+++.                ....+.+.+.+.. .+..+|+++++.+
T Consensus        99 ~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~  160 (171)
T 4gp7_A           99 HCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE  160 (171)
T ss_dssp             TCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred             CCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence            357799999998 566666                4466677765542 3566888887754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.25  E-value=3.1e-06  Score=83.00  Aligned_cols=55  Identities=15%  Similarity=0.105  Sum_probs=39.8

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|++.....+.+.+.+... +..+|+++++.+ ....+.+|+.++
T Consensus       238 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl  294 (608)
T 3j16_B          238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCII  294 (608)
T ss_dssp             SCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred             hCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            36789999998 78999999999999987654 345666665544 345566676554

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.22  E-value=6.3e-07  Score=95.58  Aligned_cols=133  Identities=20%  Similarity=0.281  Sum_probs=79.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc--------------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA--------------  102 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  102 (365)
                      +.|.||+|+||||+++++++ +..+..|.+.+++.+....+.        ..+  ...+.+.+++.              
T Consensus      1062 v~ivG~sGsGKSTl~~~l~g-~~~p~~G~I~i~g~~i~~~~~--------~~~--r~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A         1062 LALVGSSGCGKSTVVQLLER-FYDPMAGSVFLDGKEIKQLNV--------QWL--RAQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp             EEEECSSSTTHHHHHHHHTT-SSCCSEEEEESSSSCTTSSCH--------HHH--TTSCEEEESSCCCCSSBHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhc-CcCCCCCEEEECCEEcccCCH--------HHH--HhceEEECCCCccccccHHHHHhcc
Confidence            89999999999999999998 678888888888865511000        000  00111111111              


Q ss_pred             ---CccchhHHHHHHHH-----HHhcCCC-----------CCCCC------------CCceEEEEeCC-CCCCHHHHHHH
Q 017844          103 ---GFQDRYVVQEVIKE-----MAKNRPI-----------DTKGK------------RGFKVLVLNEV-DKLSREAQHSL  150 (365)
Q Consensus       103 ---~~~~~~~~~~~l~~-----~~~~~~~-----------~~~~~------------~~~~vliiDE~-~~L~~~~~~~L  150 (365)
                         .......+.+..+.     +....+.           .+|+.            .+++|+++||+ ..|+..+...+
T Consensus      1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A         1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp             CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence               00111112222221     1111111           11111            26789999999 78999999999


Q ss_pred             HHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          151 RRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       151 l~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+.+++...+..+|++|++.+.+..  .+|+.
T Consensus      1211 ~~~l~~~~~~~tvi~isH~l~~i~~--~dri~ 1240 (1284)
T 3g5u_A         1211 QEALDKAREGRTCIVIAHRLSTIQN--ADLIV 1240 (1284)
T ss_dssp             HHHHHHHSSSSCEEEECSCTTGGGS--CSEEE
T ss_pred             HHHHHHhCCCCEEEEEecCHHHHHc--CCEEE
Confidence            9999887667788889988875422  45543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.20  E-value=9.3e-07  Score=94.29  Aligned_cols=125  Identities=18%  Similarity=0.292  Sum_probs=73.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccc----------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQD----------  106 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  106 (365)
                      +.+.||+|+||||+++++++ +..+..|.+.+++.+... ...       .  .-...+.+.+++.....          
T Consensus       419 ~~ivG~sGsGKSTl~~ll~g-~~~~~~G~i~i~g~~i~~-~~~-------~--~~r~~i~~v~Q~~~l~~~ti~eNi~~g  487 (1284)
T 3g5u_A          419 VALVGNSGCGKSTTVQLMQR-LYDPLDGMVSIDGQDIRT-INV-------R--YLREIIGVVSQEPVLFATTIAENIRYG  487 (1284)
T ss_dssp             EEEECCSSSSHHHHHHHTTT-SSCCSEEEEEETTEEGGG-SCH-------H--HHHHHEEEECSSCCCCSSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEEHHh-CCH-------H--HHHhheEEEcCCCccCCccHHHHHhcC
Confidence            89999999999999999998 667888888888865410 000       0  00011222222221111          


Q ss_pred             -----hhHHHHHHHH-----HHhcCCC-----------CCCC------------CCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844          107 -----RYVVQEVIKE-----MAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus       107 -----~~~~~~~l~~-----~~~~~~~-----------~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                           ...+.+..+.     +....+.           .+|+            ..+++|+++||+ ..|+.+....+.+
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~  567 (1284)
T 3g5u_A          488 REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA  567 (1284)
T ss_dssp             CSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence                 1111111111     0000110           1111            126789999999 7899998888888


Q ss_pred             HHhhhcCceeEEEEecCCCc
Q 017844          153 TMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+++...+..+|+++++...
T Consensus       568 ~l~~~~~~~t~i~itH~l~~  587 (1284)
T 3g5u_A          568 ALDKAREGRTTIVIAHRLST  587 (1284)
T ss_dssp             HHHHHHTTSEEEEECSCHHH
T ss_pred             HHHHHcCCCEEEEEecCHHH
Confidence            88776667778888887653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.19  E-value=8e-07  Score=95.06  Aligned_cols=126  Identities=18%  Similarity=0.302  Sum_probs=78.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc------------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------  104 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  104 (365)
                      +.|+||+|+||||+++++.+ +..+..|.+.++|.+...-+      .  ..+  ...+.+.+++...            
T Consensus      1108 vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~iDG~di~~i~------~--~~l--R~~i~~V~Qdp~LF~gTIreNI~~g 1176 (1321)
T 4f4c_A         1108 LALVGPSGCGKSTVVALLER-FYDTLGGEIFIDGSEIKTLN------P--EHT--RSQIAIVSQEPTLFDCSIAENIIYG 1176 (1321)
T ss_dssp             EEEECSTTSSTTSHHHHHTT-SSCCSSSEEEETTEETTTBC------H--HHH--HTTEEEECSSCCCCSEEHHHHHSSS
T ss_pred             EEEECCCCChHHHHHHHHhc-CccCCCCEEEECCEEhhhCC------H--HHH--HhheEEECCCCEeeCccHHHHHhcc
Confidence            89999999999999999998 77889999999987651000      0  000  1122233332211            


Q ss_pred             -----cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CCCCHHHHHHH
Q 017844          105 -----QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSL  150 (365)
Q Consensus       105 -----~~~~~~~~~l~~~-----~~~~~~-----------~~~~------------~~~~~vliiDE~-~~L~~~~~~~L  150 (365)
                           .+...+.+.++..     ....|-           .+|+            -.+++|+|+||+ ..++.+....+
T Consensus      1177 ld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I 1256 (1321)
T 4f4c_A         1177 LDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256 (1321)
T ss_dssp             SCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHH
Confidence                 1111222222211     111111           0111            126789999999 78999999999


Q ss_pred             HHHHhhhcCceeEEEEecCCCcc
Q 017844          151 RRTMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus       151 l~~le~~~~~~~~Il~t~~~~~l  173 (365)
                      .+.+++...+..+|+++++...+
T Consensus      1257 q~~l~~~~~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A         1257 QEALDRAREGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp             HHHHTTTSSSSEEEEECSSSSTT
T ss_pred             HHHHHHHcCCCEEEEeccCHHHH
Confidence            99999887788899999887654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.17  E-value=2.2e-06  Score=84.16  Aligned_cols=56  Identities=9%  Similarity=0.131  Sum_probs=40.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeEE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNIR  185 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i~  185 (365)
                      .+++++++||+ ..|+......+.+.|.+... +..+|+++++.. ....+.+|+.++.
T Consensus       245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~  302 (607)
T 3bk7_A          245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVY  302 (607)
T ss_dssp             SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEEC
Confidence            36799999998 88999998888888887633 566777777644 4455566665443

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.17  E-value=1.1e-05  Score=73.87  Aligned_cols=47  Identities=23%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             CCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844            9 PKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus         9 P~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +.+++++... ..+..+  ....+.  .++++||+|+||||+++++++.+..
T Consensus       103 ~~~l~~lg~~-~~l~~l--~~~~~g--~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          103 VLTMEELGMG-EVFKRV--SDVPRG--LVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             CCCTTTTTCC-HHHHHH--HHCSSE--EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHcCCh-HHHHHH--HhCCCC--EEEEECCCCCCHHHHHHHHHhcccC
Confidence            3456666443 333333  222222  4999999999999999999997643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.17  E-value=8.7e-06  Score=69.45  Aligned_cols=22  Identities=41%  Similarity=0.715  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.||+|+||||+++.+++.+
T Consensus        19 i~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           19 YIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhccC
Confidence            8999999999999999999854

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.17  E-value=4.4e-05  Score=81.45  Aligned_cols=199  Identities=14%  Similarity=0.155  Sum_probs=103.4

Q ss_pred             CCCCCCccccCHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHh---cCCCCccc-eeccccceecCCCcc
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVTEQ--DCPHLLFYGPPGSGKKTLIMALLRQV---FGPGAEKV-KVENKTWKIDAGSRN   81 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKTtla~~la~~l---~~~~~~~i-~~~~~~~~~~~~~~~   81 (365)
                      -|.....++|.+..++.|...+...  ....+.|+|+.|+||||||+.+++..   .......+ .++....     .. 
T Consensus       119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~-  192 (1249)
T 3sfz_A          119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ-----DK-  192 (1249)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC-----CH-
T ss_pred             CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc-----Cc-
Confidence            3556678999999999999998543  22338999999999999998876542   11011100 1110000     00 


Q ss_pred             eecccccccc-ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           82 IDLELTTLSS-ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                      .... ..... ...+........ .......+....+.....    ...++-+||+|+++.  ..       .++....+
T Consensus       193 ~~~~-~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~----~~~~~~LlvlDd~~~--~~-------~~~~~~~~  257 (1249)
T 3sfz_A          193 SGLL-MKLQNLCMRLDQEESFSQ-RLPLNIEEAKDRLRVLML----RKHPRSLLILDDVWD--PW-------VLKAFDNQ  257 (1249)
T ss_dssp             HHHH-HHHHHHHHHHTTTCTTCS-SCCSSHHHHHHHHHHHTS----SSSCSCEEEEESCCC--HH-------HHTTTCSS
T ss_pred             hHHH-HHHHHHHHHhhhhccccc-CCCCCHHHHHHHHHHHHh----ccCCCEEEEEecCCC--HH-------HHHhhcCC
Confidence            0000 00000 000000000000 000012222222222111    122356999999974  21       23334567


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINS-PTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI  229 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~-~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai  229 (365)
                      .++|+||.+..- ..........+.+.+ ++.++-.+.+...+....-. .++....|++.++|-+-.+.
T Consensus       258 ~~ilvTtR~~~~-~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~  325 (1249)
T 3sfz_A          258 CQILLTTRDKSV-TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVS  325 (1249)
T ss_dssp             CEEEEEESSTTT-TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHH
T ss_pred             CEEEEEcCCHHH-HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHH
Confidence            788888876542 111122234677875 99999999998776432222 23567889999988775443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.13  E-value=2.4e-06  Score=82.79  Aligned_cols=55  Identities=11%  Similarity=0.138  Sum_probs=41.7

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+...+..+.+.+.+...+..+|+++++.+ ....+.+|+.++
T Consensus       155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~-~~~~~~d~i~vl  210 (538)
T 3ozx_A          155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI-VLDYLTDLIHII  210 (538)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHH-HHHHHCSEEEEE
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChH-HHHhhCCEEEEe
Confidence            36789999998 78999999999999988765666777777654 445566666544

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.12  E-value=5.5e-06  Score=81.28  Aligned_cols=55  Identities=5%  Similarity=0.117  Sum_probs=39.6

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhccceeE
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      .+++++++||+ ..|+......+.++|.+..  .+..+|++|++.+ ....+.+|+.++
T Consensus       484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl  541 (608)
T 3j16_B          484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVF  541 (608)
T ss_dssp             SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEC
T ss_pred             hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            47899999998 7899999988888887753  2456777776654 334555666443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.11  E-value=4.5e-05  Score=67.20  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      +.|.||+|+||||+++++++. ..+..+.+.+++.
T Consensus         5 v~lvG~nGaGKSTLln~L~g~-~~~~~G~i~~~g~   38 (270)
T 3sop_A            5 IMVVGQSGLGKSTLVNTLFKS-QVSRKASSWNREE   38 (270)
T ss_dssp             EEEEESSSSSHHHHHHHHHHH-HC-----------
T ss_pred             EEEECCCCCCHHHHHHHHhCC-CCCCCCccccCCc
Confidence            789999999999999999994 4566666655554

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.09  E-value=8.7e-07  Score=94.78  Aligned_cols=126  Identities=21%  Similarity=0.324  Sum_probs=74.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc------------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF------------  104 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  104 (365)
                      +.++||+|+||||+++++.+ ++.+..|.+.+++.+.. +-..       .  .-...+.+++++.-.            
T Consensus       447 vaivG~sGsGKSTll~ll~~-~~~~~~G~I~idG~~i~-~~~~-------~--~lr~~i~~v~Q~~~Lf~~TI~eNI~~g  515 (1321)
T 4f4c_A          447 VALVGSSGCGKSTIISLLLR-YYDVLKGKITIDGVDVR-DINL-------E--FLRKNVAVVSQEPALFNCTIEENISLG  515 (1321)
T ss_dssp             EEEEECSSSCHHHHHHHHTT-SSCCSEEEEEETTEETT-TSCH-------H--HHHHHEEEECSSCCCCSEEHHHHHHTT
T ss_pred             EEEEecCCCcHHHHHHHhcc-ccccccCcccCCCccch-hccH-------H--HHhhcccccCCcceeeCCchhHHHhhh
Confidence            89999999999999999998 66888888888886541 0000       0  000112222222111            


Q ss_pred             ---cchhHHHHHHHH-----HHhcCCC-----------CCCC------------CCCceEEEEeCC-CCCCHHHHHHHHH
Q 017844          105 ---QDRYVVQEVIKE-----MAKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLRR  152 (365)
Q Consensus       105 ---~~~~~~~~~l~~-----~~~~~~~-----------~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~  152 (365)
                         .+...+.+..+.     +...-|-           .+|+            ..+++|+++||+ ..++.+....+.+
T Consensus       516 ~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~  595 (1321)
T 4f4c_A          516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ  595 (1321)
T ss_dssp             CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred             cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHH
Confidence               111112222211     0011110           1111            236789999998 7788877777788


Q ss_pred             HHhhhcCceeEEEEecCCCcc
Q 017844          153 TMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~~l  173 (365)
                      .+++...+..+|++|++...+
T Consensus       596 ~l~~~~~~~T~iiiaHrls~i  616 (1321)
T 4f4c_A          596 ALDKAAKGRTTIIIAHRLSTI  616 (1321)
T ss_dssp             HHHHHHTTSEEEEECSCTTTT
T ss_pred             HHHHHhCCCEEEEEcccHHHH
Confidence            887776677888899887643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.03  E-value=9.3e-06  Score=79.97  Aligned_cols=129  Identities=14%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhcCC-CCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHH
Q 017844           33 DCPHLLFYGPPGSGKKTLIMALLRQVFGP-GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQ  111 (365)
Q Consensus        33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (365)
                      ..|.+.+.||+|+||||+++++++. ..| +.|.+.+++..+.......       .......+.+..++....+...+.
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~-------~~~~~~~i~~v~Q~~~l~~~~tv~  115 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVN-------EDKWRGKVSYQDYEIEISDASEVE  115 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSS-------SSCCEEEESCC---CCCCCHHHHH
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCc-------cccceeEEeeecccccCCCHHHHH
Confidence            3455999999999999999999994 445 5677766664420000000       000112344444444444545555


Q ss_pred             HHHHHHHhcC---CCCC---------CCCCCceEEEEeCC-------CCCCHHHHHHHHHHHhhh---cCceeEEEEecC
Q 017844          112 EVIKEMAKNR---PIDT---------KGKRGFKVLVLNEV-------DKLSREAQHSLRRTMEKY---SASCRLILCCNS  169 (365)
Q Consensus       112 ~~l~~~~~~~---~~~~---------~~~~~~~vliiDE~-------~~L~~~~~~~Ll~~le~~---~~~~~~Il~t~~  169 (365)
                      +.+.......   ....         .....++++++||+       ..+++.....+..++.++   +..+.+++++++
T Consensus       116 e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~  195 (608)
T 3szr_A          116 KEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN  195 (608)
T ss_dssp             TTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred             HHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence            5554432111   0000         11235689999999       344555555566666553   223444444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.01  E-value=0.00028  Score=80.15  Aligned_cols=168  Identities=13%  Similarity=0.182  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecC
Q 017844           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELS   98 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (365)
                      +...-.+..++..+..  ..+.||+|||||.+++.+|+.+..+-   +.++                             
T Consensus       591 drcy~tl~~Al~~~~g--g~~~GPaGtGKTet~k~La~~lgr~~---~vfn-----------------------------  636 (3245)
T 3vkg_A          591 DRCYLTLTQALESRMG--GNPFGPAGTGKTETVKALGSQLGRFV---LVFC-----------------------------  636 (3245)
T ss_dssp             HHHHHHHHHHHHTTCE--EEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-----------------------------
T ss_pred             HHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHhCCeE---EEEe-----------------------------
Confidence            3445566677765554  56889999999999999999763211   1111                             


Q ss_pred             CCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh-------hh--------------
Q 017844           99 PSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME-------KY--------------  157 (365)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le-------~~--------------  157 (365)
                      +++.-  +...+..++..++...          .-.++||++++..+....+...+.       +.              
T Consensus       637 C~~~~--d~~~~g~i~~G~~~~G----------aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l  704 (3245)
T 3vkg_A          637 CDEGF--DLQAMSRIFVGLCQCG----------AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISL  704 (3245)
T ss_dssp             CSSCC--CHHHHHHHHHHHHHHT----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEEC
T ss_pred             CCCCC--CHHHHHHHHhhHhhcC----------cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEee
Confidence            11111  1112334445554422          367999999999987776655443       10              


Q ss_pred             cCceeEEEEecC----CCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------
Q 017844          158 SASCRLILCCNS----SSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEK-------------  220 (365)
Q Consensus       158 ~~~~~~Il~t~~----~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~-------------  220 (365)
                      ..++.++++.|.    ...+++.+++||..+.+..|+.+.+.+++-.   .+|+.-.......++..             
T Consensus       705 ~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~H  781 (3245)
T 3vkg_A          705 HQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSH  781 (3245)
T ss_dssp             CTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             cCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            123445666652    2479999999999999999999999988753   45665334444333331             


Q ss_pred             cCCCHHHHHHHHHHH
Q 017844          221 SNRSLRRAILSFETC  235 (365)
Q Consensus       221 ~~g~lr~ai~~l~~~  235 (365)
                      .+-.+|...+.|..+
T Consensus       782 YDfGLRalKsVL~~A  796 (3245)
T 3vkg_A          782 YDFGLRALKSVLVSA  796 (3245)
T ss_dssp             CCCSHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHH
Confidence            234577777777654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.95  E-value=2.8e-06  Score=82.37  Aligned_cols=50  Identities=14%  Similarity=0.128  Sum_probs=33.4

Q ss_pred             HHHHHHHHH-HHHcCCCCeEEEECCCCCcHHHHHHHH--HHHhcCCCCccceeccc
Q 017844           19 QDIAQNLKK-LVTEQDCPHLLFYGPPGSGKKTLIMAL--LRQVFGPGAEKVKVENK   71 (365)
Q Consensus        19 ~~~~~~l~~-~l~~~~~~~lll~Gp~G~GKTtla~~l--a~~l~~~~~~~i~~~~~   71 (365)
                      ..+++.+.. .+..|..  ++|.||||+||||+++.+  ++ +..++.+.+++++.
T Consensus        25 ~~~Ld~i~~G~i~~Ge~--~~l~G~nGsGKSTL~~~~ll~G-l~~~~~g~i~v~g~   77 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGRS--TLVSGTSGTGKTLFSIQFLYNG-IIEFDEPGVFVTFE   77 (525)
T ss_dssp             CTTHHHHTTSSEETTSE--EEEEESTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS
T ss_pred             chhHHHhcCCCCCCCeE--EEEEcCCCCCHHHHHHHHHHHH-HHhCCCCEEEEEEe
Confidence            334444443 4444544  999999999999999994  55 44445566776654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.92  E-value=5.6e-06  Score=66.76  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=29.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      +.|.||+|+||||+++.+++.+  +..+.+.+++..+
T Consensus        36 v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i   70 (158)
T 1htw_A           36 VYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTL   70 (158)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEee
Confidence            8999999999999999999965  6677777766544

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.90  E-value=1.8e-05  Score=72.78  Aligned_cols=45  Identities=27%  Similarity=0.423  Sum_probs=36.6

Q ss_pred             HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus        23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      +.+...+..|..  ++|.||+|+||||+++++++ +..+..+.+.+++
T Consensus       166 ~~l~~~i~~G~~--i~ivG~sGsGKSTll~~l~~-~~~~~~g~I~ie~  210 (361)
T 2gza_A          166 SFLRRAVQLERV--IVVAGETGSGKTTLMKALMQ-EIPFDQRLITIED  210 (361)
T ss_dssp             HHHHHHHHTTCC--EEEEESSSSCHHHHHHHHHT-TSCTTSCEEEEES
T ss_pred             HHHHHHHhcCCE--EEEECCCCCCHHHHHHHHHh-cCCCCceEEEECC
Confidence            667777778876  99999999999999999998 4566667676664

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.87  E-value=3.1e-05  Score=66.23  Aligned_cols=23  Identities=35%  Similarity=0.366  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|.||||+||||+++.++..+.
T Consensus        28 ~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           28 TEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999998543

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.85  E-value=4.2e-05  Score=71.75  Aligned_cols=40  Identities=10%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             eEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          132 KVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       132 ~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      +++|+||+ ..|+......+.+.|.+...+..+|++|+++.
T Consensus       317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~  357 (415)
T 4aby_A          317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ  357 (415)
T ss_dssp             SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence            89999999 68999999999999998876677888888753

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.85  E-value=2.8e-05  Score=71.10  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=25.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~   69 (365)
                      ++|+||||+||||++..++..+.......++++
T Consensus        64 v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~   96 (349)
T 2zr9_A           64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFID   96 (349)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            899999999999999999876654433333443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.83  E-value=5.6e-05  Score=77.46  Aligned_cols=51  Identities=16%  Similarity=0.185  Sum_probs=38.2

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++++||+ ..|+......+.+.|.+  .+..+|+++++.. ....+.+|+.
T Consensus       565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~-~l~~~adrii  616 (986)
T 2iw3_A          565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSV-FLDNVCEYII  616 (986)
T ss_dssp             TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHH-HHHHHCSEEE
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHH-HHHHhCCEEE
Confidence            36789999998 88999999999999988  3566777776644 3344555553

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.82  E-value=3.6e-05  Score=65.84  Aligned_cols=23  Identities=22%  Similarity=0.572  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+||||+||||+++.++..+.
T Consensus        26 ~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           26 IALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999997654

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.79  E-value=8.8e-05  Score=72.44  Aligned_cols=39  Identities=18%  Similarity=0.376  Sum_probs=29.7

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      +++++||||+++++......|++.+.   ...++|++.+...
T Consensus       279 ~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~Q  317 (574)
T 3e1s_A          279 PYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTDQ  317 (574)
T ss_dssp             SCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred             cCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecccc
Confidence            56899999999999887766665543   5678888877544

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.77  E-value=4.5e-05  Score=70.45  Aligned_cols=23  Identities=39%  Similarity=0.684  Sum_probs=21.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+||+|+||||+++++++.+.
T Consensus       139 i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          139 ILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhhcC
Confidence            99999999999999999999654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.76  E-value=2.9e-05  Score=70.93  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=25.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      ++|+||||+||||++..++..+.......++++.
T Consensus        64 ~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~   97 (356)
T 3hr8_A           64 VEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA   97 (356)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence            8999999999999999999876443333344443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.72  E-value=0.00011  Score=62.29  Aligned_cols=20  Identities=40%  Similarity=0.486  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|+||||+||||+++.++.
T Consensus        23 ~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           23 TQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999988

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.71  E-value=3.5e-05  Score=78.81  Aligned_cols=43  Identities=12%  Similarity=0.205  Sum_probs=28.3

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHH-HHHhhhc--CceeEEEEecCCC
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLR-RTMEKYS--ASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll-~~le~~~--~~~~~Il~t~~~~  171 (365)
                      .+++++++||+ ..+++.....+. .+++...  .+..+|++|++.+
T Consensus       751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e  797 (918)
T 3thx_B          751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP  797 (918)
T ss_dssp             CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence            35689999998 678876655555 4555432  3566777766644

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.71  E-value=3.6e-05  Score=68.80  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=21.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|.||||+||||+++.++..+.
T Consensus        38 ~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           38 IMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998654

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.71  E-value=0.00014  Score=64.96  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|+||||+|||+++..++..
T Consensus       126 iLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          126 VIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEECSCSSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHh
Confidence            799999999999999999875

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.70  E-value=5.6e-05  Score=75.98  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||+|+||||+++.++...
T Consensus       579 ~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          579 VLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHhhh
Confidence            8999999999999999999854

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.69  E-value=5.7e-05  Score=77.44  Aligned_cols=20  Identities=30%  Similarity=0.285  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|+||+|+||||+++.++.
T Consensus       665 ~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          665 HIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999854

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.63  E-value=0.00013  Score=70.09  Aligned_cols=50  Identities=22%  Similarity=0.292  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      ...+++.+...+..|..  ++|.||+|+||||+++++++. ..++.+.+.+++
T Consensus       246 ~~~~l~~l~~~v~~g~~--i~I~GptGSGKTTlL~aL~~~-i~~~~giitied  295 (511)
T 2oap_1          246 PSGVLAYLWLAIEHKFS--AIVVGETASGKTTTLNAIMMF-IPPDAKVVSIED  295 (511)
T ss_dssp             CHHHHHHHHHHHHTTCC--EEEEESTTSSHHHHHHHHGGG-SCTTCCEEEEES
T ss_pred             CHHHHHHHHHHHhCCCE--EEEECCCCCCHHHHHHHHHhh-CCCCCCEEEEcC
Confidence            46777888888887776  999999999999999999984 456666666654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=97.63  E-value=0.0008  Score=69.17  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             ccCHHHHHHHHHHHHc-CCCCeEEEECCCCCcHHHHHHHHHH
Q 017844           16 IVHQDIAQNLKKLVTE-QDCPHLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        16 ig~~~~~~~l~~~l~~-~~~~~lll~Gp~G~GKTtla~~la~   56 (365)
                      +|.+..++.|..++.. ...+.+.|+||.|+||||+|+.+++
T Consensus       131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence            8999999999998876 3333499999999999999999885

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=97.61  E-value=0.0012  Score=63.59  Aligned_cols=69  Identities=20%  Similarity=0.305  Sum_probs=50.2

Q ss_pred             ceEEEEeCCCCCC----HHHHHHHHHHHhhh-cCceeEEEEecCCC--cccHHHhccce-eEEecCCCHHHHHHHHH
Q 017844          131 FKVLVLNEVDKLS----REAQHSLRRTMEKY-SASCRLILCCNSSS--KVTEAIRSRCL-NIRINSPTEEQIVKVLE  199 (365)
Q Consensus       131 ~~vliiDE~~~L~----~~~~~~Ll~~le~~-~~~~~~Il~t~~~~--~l~~~l~sR~~-~i~~~~~~~~~~~~iL~  199 (365)
                      +-++||||++.+.    .+....|.++..+- ...+.+|++|..+.  .+...+++-|. .+.|...+..+...+|.
T Consensus       344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd  420 (574)
T 2iut_A          344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD  420 (574)
T ss_dssp             EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred             cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence            4689999998663    34445555555543 34577888888877  67788888885 78898888888887774

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.57  E-value=0.00014  Score=60.49  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .+++||.|+||||.+..++....
T Consensus        11 ~v~~G~mgsGKTT~ll~~a~r~~   33 (191)
T 1xx6_A           11 EVIVGPMYSGKSEELIRRIRRAK   33 (191)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            89999999999999888877664

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.57  E-value=6.6e-05  Score=76.92  Aligned_cols=41  Identities=20%  Similarity=0.414  Sum_probs=33.4

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+++++|+||+ ..|+......+.+.|.+.  ...+|++|++.+
T Consensus       918 ~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e  959 (986)
T 2iw3_A          918 QRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAE  959 (986)
T ss_dssp             TCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHH
T ss_pred             hCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHH
Confidence            47899999999 789999999999999876  346777777644

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=97.57  E-value=0.00017  Score=71.07  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=29.1

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      +.+++||||+++++......|++.+   +.+.++|++.+...
T Consensus       262 ~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~~Q  300 (608)
T 1w36_D          262 HLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRDQ  300 (608)
T ss_dssp             SCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTTS
T ss_pred             CCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcchhh
Confidence            5689999999999876655555544   55788888887654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.56  E-value=0.00018  Score=65.83  Aligned_cols=22  Identities=36%  Similarity=0.422  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|+||||+||||+++.++...
T Consensus       134 ~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          134 TEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999864

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.56  E-value=0.00057  Score=65.31  Aligned_cols=68  Identities=19%  Similarity=0.275  Sum_probs=45.5

Q ss_pred             eEEEEeCCCCCCHH----HHHHHHHHHhhhc-CceeEEEEecCCC--cccHHHhccce-eEEecCCCHHHHHHHHH
Q 017844          132 KVLVLNEVDKLSRE----AQHSLRRTMEKYS-ASCRLILCCNSSS--KVTEAIRSRCL-NIRINSPTEEQIVKVLE  199 (365)
Q Consensus       132 ~vliiDE~~~L~~~----~~~~Ll~~le~~~-~~~~~Il~t~~~~--~l~~~l~sR~~-~i~~~~~~~~~~~~iL~  199 (365)
                      -+++|||+..+...    ..+.+.++..... ..+.+|++|..+.  .+...+++.+. .+.|.-.+..+...++.
T Consensus       299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg  374 (512)
T 2ius_A          299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD  374 (512)
T ss_dssp             EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred             EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence            48999999654332    2223333333322 3677888888877  47777888774 78898888888887775

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.52  E-value=0.00011  Score=80.30  Aligned_cols=27  Identities=33%  Similarity=0.577  Sum_probs=23.0

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      .++|+||||||||++|.+++.+.....
T Consensus      1429 ~vll~GppGtGKT~LA~ala~ea~~~G 1455 (2050)
T 3cmu_A         1429 IVEIYGPESSGKTTLTLQVIAAAQREG 1455 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            399999999999999999988765443

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.52  E-value=0.0006  Score=56.43  Aligned_cols=41  Identities=12%  Similarity=0.188  Sum_probs=32.6

Q ss_pred             CCCceEEEEeCCC------CCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          128 KRGFKVLVLNEVD------KLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       128 ~~~~~vliiDE~~------~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+++++||+||+.      .++.   +.+++.+.+.+.+.-+|+|++...
T Consensus       118 ~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap  164 (196)
T 1g5t_A          118 DPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH  164 (196)
T ss_dssp             CTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC
T ss_pred             cCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCc
Confidence            4578999999983      3443   357888888888999999999876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.51  E-value=0.00018  Score=61.90  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||||+||||+++.++...
T Consensus        27 ~~i~G~~GsGKTtl~~~l~~~~   48 (243)
T 1n0w_A           27 TEMFGEFRTGKTQICHTLAVTC   48 (243)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            8999999999999999999863

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.51  E-value=0.0012  Score=55.90  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=22.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      +++.|++|+||||++-.++..+...+
T Consensus         9 I~~~~kgGvGKTt~a~~la~~l~~~G   34 (228)
T 2r8r_A            9 VFLGAAPGVGKTYAMLQAAHAQLRQG   34 (228)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            99999999999999999998775443

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.50  E-value=0.00016  Score=59.89  Aligned_cols=20  Identities=35%  Similarity=0.537  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.||+|+||||+++.+++
T Consensus         5 i~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            5 YIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            78999999999999999987

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.47  E-value=0.00084  Score=60.02  Aligned_cols=35  Identities=31%  Similarity=0.250  Sum_probs=28.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~   72 (365)
                      +.|.||+|+||||+++.+++.+ .+..+.+.+.+.+
T Consensus       105 i~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g~D  139 (304)
T 1rj9_A          105 VLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCAGD  139 (304)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeec
Confidence            8999999999999999999955 4566666666544

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.44  E-value=0.00016  Score=73.20  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||+|+||||+++.++...
T Consensus       610 ~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          610 LIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            8999999999999999999853

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.44  E-value=0.0012  Score=57.66  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.6

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .++|.|+||+||||+++.++..+.
T Consensus         6 lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            6 LIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            389999999999999999998753

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.44  E-value=0.00061  Score=58.66  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.....+..+++.+   .++++||+|+|||.++..++..+
T Consensus        96 ~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A           96 DYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             HHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence            44444455554332   38999999999999998887754

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.44  E-value=0.00022  Score=63.51  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=24.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC--CCccceecc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP--GAEKVKVEN   70 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~--~~~~i~~~~   70 (365)
                      ++++||||+||||++..++......  ....++++.
T Consensus        31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~   66 (333)
T 3io5_A           31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS   66 (333)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            8999999999999988777665432  333344444

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.42  E-value=0.0003  Score=64.59  Aligned_cols=25  Identities=36%  Similarity=0.579  Sum_probs=21.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      ++|+||||+|||+++..++......
T Consensus        77 i~I~G~pGsGKTtlal~la~~~~~~  101 (366)
T 1xp8_A           77 TEIYGPESGGKTTLALAIVAQAQKA  101 (366)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHHC
Confidence            8999999999999999988766433

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.41  E-value=0.00014  Score=66.05  Aligned_cols=40  Identities=28%  Similarity=0.427  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .+++.+...+..|..++++|.||+|+||||+++++++.+.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4455566666677777799999999999999999999764

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.38  E-value=0.00012  Score=67.04  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=25.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      ++|+||||+||||++..++..........++++.
T Consensus        66 i~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           66 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            8999999999999999998876544333444443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.37  E-value=0.001  Score=60.16  Aligned_cols=34  Identities=29%  Similarity=0.357  Sum_probs=27.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      +.|.||+|+||||+++.+++.+ .+..+.+.+.+.
T Consensus       132 i~lvG~nGaGKTTll~~Lag~l-~~~~g~V~l~g~  165 (328)
T 3e70_C          132 IMFVGFNGSGKTTTIAKLANWL-KNHGFSVVIAAS  165 (328)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHH-HhcCCEEEEEee
Confidence            8999999999999999999955 455566655553

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.34  E-value=0.00019  Score=60.10  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=21.3

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|.||+|+||||+++.+++.+
T Consensus        31 ~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           31 HVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            49999999999999999999866

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.32  E-value=0.00066  Score=70.48  Aligned_cols=18  Identities=39%  Similarity=0.556  Sum_probs=17.6

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMAL   54 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~l   54 (365)
                      ++|+||+|+||||+++.+
T Consensus       792 ~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          792 VLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHH
Confidence            899999999999999999

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.32  E-value=0.00012  Score=61.14  Aligned_cols=34  Identities=29%  Similarity=0.336  Sum_probs=22.7

Q ss_pred             HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.+...+..+.  .++|.||+|+||||+++.+++.+
T Consensus        16 ~~~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           16 ENLYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             --------CCC--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence            34444443333  49999999999999999999976

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.30  E-value=0.0012  Score=58.85  Aligned_cols=88  Identities=15%  Similarity=0.181  Sum_probs=46.0

Q ss_pred             HHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecCC-CHHHHHHHHHHHHHHcCC--------CCCHHHHHHH
Q 017844          147 QHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSP-TEEQIVKVLEFIAKKEGL--------QLPSGFATRL  217 (365)
Q Consensus       147 ~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~-~~~~~~~iL~~~~~~~~~--------~i~~~~~~~i  217 (365)
                      .....+.+++......+.+++-...-...++..-   +.+.+. ...++++.+...+...|.        .++|+.... 
T Consensus        78 ~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g---~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~-  153 (322)
T 3exa_A           78 QDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQ---FNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAA-  153 (322)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHT---CCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTT-
T ss_pred             HHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcC---CcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhh-
Confidence            3444555555432333333333333233444333   245444 344677777776666553        234443322 


Q ss_pred             HHHcCCCHHHHHHHHHHHHhcCC
Q 017844          218 AEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       218 ~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                        ....|.++.+..|+-....+.
T Consensus       154 --i~pnd~~Ri~RALEV~~~TG~  174 (322)
T 3exa_A          154 --IHPNNYRRVIRALEIIKLTGK  174 (322)
T ss_dssp             --SCTTCHHHHHHHHHHHHHTC-
T ss_pred             --cCcccHHHHHHHHHHHHHHCC
Confidence              246899999999997765554

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.30  E-value=0.00026  Score=68.47  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|.||+|+||||+++.++....
T Consensus       284 ~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          284 ILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.29  E-value=0.0013  Score=61.64  Aligned_cols=24  Identities=29%  Similarity=0.268  Sum_probs=21.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +++.||+|+||||++..+|..+..
T Consensus       100 I~lvG~~GsGKTTt~~kLA~~l~~  123 (433)
T 3kl4_A          100 IMLVGVQGSGKTTTAGKLAYFYKK  123 (433)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999987643

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.29  E-value=0.00027  Score=59.53  Aligned_cols=39  Identities=26%  Similarity=0.371  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHcC-CCCe-EEEECCCCCcHHHHHHHHHHHhc
Q 017844           21 IAQNLKKLVTEQ-DCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        21 ~~~~l~~~l~~~-~~~~-lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.+.+...+... ..+. +.|.||+|+||||+++.+++.+.
T Consensus         7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A            7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            444444444332 2222 89999999999999999999764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.28  E-value=0.002  Score=60.30  Aligned_cols=26  Identities=42%  Similarity=0.540  Sum_probs=23.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      ++++|++|+||||++..+|..+....
T Consensus       103 IlivG~~G~GKTTt~~kLA~~l~~~G  128 (443)
T 3dm5_A          103 LLMVGIQGSGKTTTVAKLARYFQKRG  128 (443)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             EEEECcCCCCHHHHHHHHHHHHHHCC
Confidence            89999999999999999998776543

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.28  E-value=0.0015  Score=55.96  Aligned_cols=21  Identities=24%  Similarity=0.467  Sum_probs=17.2

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+++.||+|+||||++..+.-
T Consensus        78 ~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           78 VVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHhHHHHHh
Confidence            389999999999987766543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.25  E-value=0.00011  Score=60.78  Aligned_cols=31  Identities=48%  Similarity=0.739  Sum_probs=24.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      ++|.||||+||||+++.+++.   +..+.+.+++
T Consensus        12 i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~   42 (191)
T 1zp6_A           12 LLLSGHPGSGKSTIAEALANL---PGVPKVHFHS   42 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC---SSSCEEEECT
T ss_pred             EEEECCCCCCHHHHHHHHHhc---cCCCeEEEcc
Confidence            899999999999999999884   3334444444

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.24  E-value=0.00017  Score=58.67  Aligned_cols=22  Identities=36%  Similarity=0.649  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||+|+||||+++.+++.+
T Consensus         7 i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            7 IFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999965

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.23  E-value=0.00067  Score=56.98  Aligned_cols=39  Identities=13%  Similarity=0.257  Sum_probs=26.9

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ++++|+|||++.++++..+. +..+.+  .+..+|++.-+.+
T Consensus       101 ~~dvViIDEaQF~~~~~V~~-l~~l~~--~~~~Vi~~Gl~~D  139 (214)
T 2j9r_A          101 EMDVIAIDEVQFFDGDIVEV-VQVLAN--RGYRVIVAGLDQD  139 (214)
T ss_dssp             SCCEEEECCGGGSCTTHHHH-HHHHHH--TTCEEEEEECSBC
T ss_pred             CCCEEEEECcccCCHHHHHH-HHHHhh--CCCEEEEEecccc
Confidence            46899999999998776643 444332  2677888877443

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.21  E-value=0.00018  Score=58.85  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+|++|+||||+++.++..+
T Consensus         6 i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            6 IILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8999999999999999999976

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.21  E-value=0.00014  Score=63.07  Aligned_cols=39  Identities=18%  Similarity=0.066  Sum_probs=23.0

Q ss_pred             CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ...+++.+...+..+..  +.|.||+|+||||+++.+++.+
T Consensus        11 ~~~~l~~isl~i~~g~i--igI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFL--IGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             ------------CCSEE--EEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceeecceeccCCCCEE--EEEECCCCCCHHHHHHHHHHHh
Confidence            34455555555544443  8999999999999999999965

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.21  E-value=0.00042  Score=65.67  Aligned_cols=33  Identities=33%  Similarity=0.421  Sum_probs=26.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      ++|.||+|+||||+++.|++.+ .+..+.+.+.+
T Consensus       296 I~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g  328 (503)
T 2yhs_A          296 ILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAA  328 (503)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEC
T ss_pred             EEEECCCcccHHHHHHHHHHHh-hhcCCeEEEec
Confidence            8999999999999999999965 44556666543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.19  E-value=0.00028  Score=58.05  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=22.0

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.++|+||+|+||||+++.+++.+
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            348999999999999999999977

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.18  E-value=0.00023  Score=60.52  Aligned_cols=41  Identities=29%  Similarity=0.388  Sum_probs=26.1

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCcccee
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV   68 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~   68 (365)
                      ++.+...+..|..  +.|.||+|+||||+++.+++.+  +  +.+.+
T Consensus        13 l~~isl~i~~G~~--~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~   53 (218)
T 1z6g_A           13 GLVPRGSMNNIYP--LVICGPSGVGKGTLIKKLLNEF--P--NYFYF   53 (218)
T ss_dssp             ---------CCCC--EEEECSTTSSHHHHHHHHHHHS--T--TTEEE
T ss_pred             ccCCceecCCCCE--EEEECCCCCCHHHHHHHHHhhC--C--CcEEE
Confidence            4455556666766  9999999999999999999954  3  44544

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.18  E-value=0.00022  Score=57.83  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=21.1

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|.||+|+||||+++.+++.+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999876

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.17  E-value=0.0011  Score=59.14  Aligned_cols=23  Identities=30%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.++|++|+||||++..+|..+.
T Consensus       101 i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A          101 WFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78889999999999999999664

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.15  E-value=0.0011  Score=66.19  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=31.4

Q ss_pred             eEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844          132 KVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS  171 (365)
Q Consensus       132 ~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~  171 (365)
                      +++++||+ ..|++.....+.+++.+.. .+..+|+++++.+
T Consensus       224 ~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~  265 (670)
T 3ux8_A          224 VLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED  265 (670)
T ss_dssp             CEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            49999998 7899988888888887753 3467777877754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.13  E-value=0.00039  Score=58.10  Aligned_cols=23  Identities=39%  Similarity=0.570  Sum_probs=21.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|.||+|+||||+++.+++.+.
T Consensus        28 i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           28 IWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999774

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=97.13  E-value=0.00054  Score=56.60  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHH-HHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKK-TLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKT-tla~~la~~l~~   60 (365)
                      ++++||.|+||| .|++++.+....
T Consensus        23 ~fiyG~MgsGKTt~Ll~~i~n~~~~   47 (195)
T 1w4r_A           23 QVILGPMFSGKSTELMRRVRRFQIA   47 (195)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHc
Confidence            899999999999 788888775543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.13  E-value=0.0008  Score=62.86  Aligned_cols=58  Identities=22%  Similarity=0.343  Sum_probs=37.3

Q ss_pred             CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~   69 (365)
                      -+++++--.......++..+. .....++|+||+|+||||+++++++.+. +..+.+.+.
T Consensus       144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~  201 (418)
T 1p9r_A          144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTV  201 (418)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEE
T ss_pred             CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEe
Confidence            345555444444555655543 2222389999999999999999999653 444444443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.12  E-value=0.00024  Score=59.83  Aligned_cols=29  Identities=21%  Similarity=0.414  Sum_probs=22.8

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .+..|..  +.|.||+|+||||+++++++.+
T Consensus        16 ~i~~Gei--~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           16 PAAVGRV--VVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ---CCCE--EEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCCE--EEEECCCCCCHHHHHHHHHhhC
Confidence            4455555  8999999999999999999954

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.10  E-value=0.00036  Score=62.25  Aligned_cols=36  Identities=31%  Similarity=0.580  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +++.+...+..|..  +.|+||+|+||||++++|++.+
T Consensus       115 vL~~vsl~i~~Ge~--vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          115 ALKLWLKGIPKKNC--LAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHTCTTCSE--EEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhccceEEecCCCE--EEEECCCCCcHHHHHHHHhhhc
Confidence            34444444444544  9999999999999999999965

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=97.10  E-value=0.024  Score=47.59  Aligned_cols=51  Identities=14%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             CCceEEEEeCCCCCC--HHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhc
Q 017844          129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRS  179 (365)
Q Consensus       129 ~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~s  179 (365)
                      .+.+++|+||+|.+.  ......+..++...+.+..+++.|.....-...+.+
T Consensus       157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~  209 (220)
T 1t6n_A          157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR  209 (220)
T ss_dssp             TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH
T ss_pred             ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH
Confidence            456899999999773  344455566666656567777777666543333433

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.09  E-value=0.00041  Score=60.16  Aligned_cols=40  Identities=25%  Similarity=0.293  Sum_probs=31.3

Q ss_pred             cCHHHHHHHHHHHHc---CCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           17 VHQDIAQNLKKLVTE---QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        17 g~~~~~~~l~~~l~~---~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +...+++.+...+..   +..  +.|+|++|+||||+++.+++.+
T Consensus        30 ~~~~~l~~~~~~i~~~l~g~~--i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPYLNGRS--MYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             --CHHHHHHHHTTHHHHTTCC--EEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcchhhhhhhhhhhhhcCCCE--EEEECCCCCCHHHHHHHHHHhc
Confidence            444566777666666   655  9999999999999999999976

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.09  E-value=0.00076  Score=62.65  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|+||||+||||+++.++...
T Consensus       181 ~~I~G~sGsGKTTLl~~la~~~  202 (400)
T 3lda_A          181 TELFGEFRTGKSQLCHTLAVTC  202 (400)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCChHHHHHHHHHHh
Confidence            8999999999999999876433

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.08  E-value=0.00032  Score=57.64  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.||+|+||||+++.+++.+
T Consensus         8 i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            8 LVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            8999999999999999999854

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.06  E-value=0.00036  Score=56.96  Aligned_cols=20  Identities=40%  Similarity=0.620  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.|+||+||||+++.+++
T Consensus         5 I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            5 ILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHh
Confidence            89999999999999999987

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.06  E-value=0.00039  Score=56.92  Aligned_cols=23  Identities=39%  Similarity=0.603  Sum_probs=21.3

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|+|++|+||||+++.++..+
T Consensus        13 ~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           13 NILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.06  E-value=0.00035  Score=57.00  Aligned_cols=23  Identities=43%  Similarity=0.664  Sum_probs=21.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|.||+|+||||+++.+++.+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            48999999999999999999976

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.05  E-value=0.00039  Score=58.12  Aligned_cols=22  Identities=36%  Similarity=0.767  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.||+|+||||+++.+++.+
T Consensus         7 i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            7 VVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            8999999999999999999854

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.05  E-value=0.00045  Score=55.84  Aligned_cols=25  Identities=36%  Similarity=0.420  Sum_probs=22.4

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhc
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .+++|+|++|+||||+++.++..+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3489999999999999999999773

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.02  E-value=0.00034  Score=58.49  Aligned_cols=21  Identities=33%  Similarity=0.755  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +.|.||+|+||||+++.+++.
T Consensus        10 i~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A           10 FIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHhh
Confidence            899999999999999999985

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.01  E-value=0.00038  Score=58.18  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=21.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|+|++|+||||+++.+++.+
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            39999999999999999999876

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.01  E-value=0.00081  Score=72.67  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++++||||||||++|++++.+-.
T Consensus      1085 ~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A         1085 VEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHhh
Confidence            89999999999999999987653

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.00  E-value=0.00042  Score=56.45  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||+|+||||+++.+++.+
T Consensus        11 i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A           11 YVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHhh
Confidence            8999999999999999999865

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.00  E-value=0.00042  Score=57.15  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|.|++|+||||+++.++..+.
T Consensus         6 I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            6 VVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.99  E-value=0.00059  Score=63.55  Aligned_cols=51  Identities=20%  Similarity=0.222  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHcCC-----------------C-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844           19 QDIAQNLKKLVTEQD-----------------C-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~-----------------~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      +.+++.+...+..|.                 . ..+.|.||+|+||||+++++++ +..+..+.+.+++
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G-l~~p~~GsI~~~g  104 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG-IGNEEEGAAKTGV  104 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT-CCTTSTTSCCCCC
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC-CCCccCceEEECC
Confidence            556777777777776                 1 1389999999999999999998 5556666555544

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.98  E-value=0.0039  Score=55.68  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++++||+|+||||++..+|..+.
T Consensus       107 i~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A          107 IMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCChHHHHHHHHHHHHH
Confidence            89999999999999999998664

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.98  E-value=0.0031  Score=58.86  Aligned_cols=22  Identities=41%  Similarity=0.561  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.||+|+|||||++.+++..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            7999999999999999998744

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=96.98  E-value=0.0066  Score=50.49  Aligned_cols=44  Identities=16%  Similarity=0.211  Sum_probs=28.3

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+++|+||+|.+... ....+..++...+.+..+++.|.....
T Consensus       143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~  187 (207)
T 2gxq_A          143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPS  187 (207)
T ss_dssp             TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCH
T ss_pred             hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCH
Confidence            45689999999976432 233445555555556677777766654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.96  E-value=0.0025  Score=56.77  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=21.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|.||+|+||||++..++..+.
T Consensus       108 i~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          108 IVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.95  E-value=0.00048  Score=56.61  Aligned_cols=22  Identities=41%  Similarity=0.844  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+|++|+||||+++.+++.+
T Consensus         7 I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            7 VIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.95  E-value=0.00042  Score=57.19  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=21.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|.|++|+||||+++.+++.+.
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            4 GIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999774

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.94  E-value=0.00051  Score=61.00  Aligned_cols=22  Identities=41%  Similarity=0.723  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||||+++.++..+
T Consensus        36 ivl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           36 FLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.94  E-value=0.00038  Score=60.61  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.|+||+||||+++.+++.+
T Consensus        35 i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           35 ILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             EEEESCGGGTTHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8999999999999999999876

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.93  E-value=0.00058  Score=56.09  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=21.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+|++|+||||+++.++..+.
T Consensus         5 I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            5 AVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999999763

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.92  E-value=0.0094  Score=49.98  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=22.7

Q ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           32 QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        32 ~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ...+++++.|++|+||||++..+++..
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344569999999999999999998754

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.92  E-value=0.0056  Score=61.92  Aligned_cols=21  Identities=38%  Similarity=0.583  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.||+|+||||++..++..
T Consensus       112 vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A          112 MVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999977776543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.92  E-value=0.00064  Score=55.95  Aligned_cols=23  Identities=26%  Similarity=0.585  Sum_probs=21.1

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      ..++|+|++|+||||+++.++..
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            34999999999999999999986

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.92  E-value=0.00043  Score=57.91  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.||+|+||||+++.+++.+
T Consensus         9 i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            9 IVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            8999999999999999999854

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.91  E-value=0.001  Score=57.38  Aligned_cols=23  Identities=39%  Similarity=0.678  Sum_probs=21.2

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|+||+|+||||+++.++..+
T Consensus        31 ~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           31 RYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            39999999999999999999876

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.91  E-value=0.0036  Score=53.07  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=27.3

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~  169 (365)
                      ++++|+|||++.+..  ...+.+.+.+  .+..+|+++-+
T Consensus        90 ~~dvViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~  125 (234)
T 2orv_A           90 GVAVIGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD  125 (234)
T ss_dssp             TCSEEEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred             cCCEEEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence            358999999999874  5566777776  36778888776

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.91  E-value=0.00059  Score=59.36  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|.||+|+||||+++.+++.+.
T Consensus         4 i~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            4 HLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhcCC
Confidence            78999999999999999999763

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.91  E-value=0.00048  Score=56.94  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.|++|+||||+++.++..+
T Consensus         8 I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            8 IIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8999999999999999999876

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.90  E-value=0.0013  Score=55.02  Aligned_cols=38  Identities=26%  Similarity=0.130  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHcC--CCCe-EEEECCCCCcHHHHHHHHHHHh
Q 017844           21 IAQNLKKLVTEQ--DCPH-LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        21 ~~~~l~~~l~~~--~~~~-lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++.+...+...  ..+. +.++||+|+||||+++.+++.+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A            6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            444455545432  2223 8999999999999999999865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.90  E-value=0.00088  Score=60.09  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=25.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC-CCCcccee
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG-PGAEKVKV   68 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~-~~~~~i~~   68 (365)
                      +.|.||+|+||||+++.+++.+.. +..+.+.+
T Consensus        83 igI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v  115 (308)
T 1sq5_A           83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL  115 (308)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence            899999999999999999985531 55555555

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.88  E-value=0.00071  Score=57.36  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.8

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .++|.|++|+||||+++.++..+.
T Consensus         6 ~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            6 RMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999999763

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.88  E-value=0.00065  Score=56.95  Aligned_cols=22  Identities=45%  Similarity=0.764  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||+|+||||+++.++..+
T Consensus        15 i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           15 LVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999999865

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.87  E-value=0.00059  Score=59.03  Aligned_cols=23  Identities=35%  Similarity=0.681  Sum_probs=21.1

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|.||||+||||+++.+++.+
T Consensus        29 ~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           29 RAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            39999999999999999999765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.86  E-value=0.00069  Score=57.20  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||+|+||||+++.++..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999876

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.85  E-value=0.00068  Score=54.95  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+|++|+||||+++.++..+
T Consensus         5 I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            5 IFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999976

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.85  E-value=0.00075  Score=62.14  Aligned_cols=22  Identities=55%  Similarity=0.700  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||+|+||||+++++++.+
T Consensus       172 i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          172 WLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhhc
Confidence            9999999999999999999854

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.85  E-value=0.00059  Score=55.21  Aligned_cols=21  Identities=38%  Similarity=0.656  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||+|+||||+++.+ ..+
T Consensus         4 I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            4 ILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             EEEECCTTSCHHHHHHHH-HHT
T ss_pred             EEEECCCCCCHHHHHHHH-HHC
Confidence            889999999999999999 544

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.84  E-value=0.00053  Score=61.27  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=27.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      +.|.||+|+||||+++.+++.+. +..+.+.+.+.
T Consensus       103 i~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~  136 (302)
T 3b9q_A          103 IMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAG  136 (302)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEee
Confidence            89999999999999999999653 45566666553

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.84  E-value=0.0006  Score=57.37  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||+|+||||+++.+++.+
T Consensus        11 i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           11 IVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEECcCCCCHHHHHHHHHhhC
Confidence            8999999999999999999854

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.83  E-value=0.00067  Score=57.70  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=21.1

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .+.|+||+|+||||+++.+++.+
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999865

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.83  E-value=0.00081  Score=63.78  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      .+.|.||+|+||||+++++++ +..++.+.+.+++..+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G-l~~p~~G~I~~~g~~~   67 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT-ALIPDLTLLNFRNTTE   67 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH-HHCCCTTTCCCCCTTS
T ss_pred             eEEEECCCCCcHHHHHHHHhc-CCCCCCCEEEECCEEc
Confidence            389999999999999999999 5677778888777654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.83  E-value=0.00067  Score=57.30  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||+|+||||+++.++..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.83  E-value=0.00078  Score=56.20  Aligned_cols=23  Identities=39%  Similarity=0.704  Sum_probs=21.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+|++|+||||+++.++..+.
T Consensus        23 I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           23 VLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998763

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.83  E-value=0.0033  Score=68.93  Aligned_cols=26  Identities=35%  Similarity=0.627  Sum_probs=22.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      ++++||||+||||++..++.+.....
T Consensus      1084 vll~G~~GtGKT~la~~~~~ea~k~G 1109 (2050)
T 3cmu_A         1084 VEIYGPESSGKTTLTLQVIAAAQREG 1109 (2050)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            99999999999999999988765443

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.81  E-value=0.0008  Score=55.70  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|.|++|+||||+++.+++.+
T Consensus        11 ~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           11 IIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            39999999999999999999876

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.80  E-value=0.00076  Score=55.72  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.|++|+||||+++.++..+
T Consensus         6 I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            6 VFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.80  E-value=0.0017  Score=57.66  Aligned_cols=23  Identities=30%  Similarity=0.686  Sum_probs=21.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|.||+|+||||+++.+++.+.
T Consensus        34 i~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           34 IFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            89999999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.80  E-value=0.00064  Score=57.17  Aligned_cols=22  Identities=41%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.||+|+||||+++.+++.+
T Consensus         9 i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            9 IGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999965

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.79  E-value=0.00078  Score=56.50  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=21.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++|.|++|+||||+++.++..+..
T Consensus         7 I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            7 IAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHhh
Confidence            899999999999999999997743

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.78  E-value=0.00079  Score=56.09  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|.|++|+||||+++.+++.+.
T Consensus         3 I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            3 IAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEECCCccCHHHHHHHHHHhcC
Confidence            78999999999999999999763

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.77  E-value=0.00099  Score=53.69  Aligned_cols=23  Identities=30%  Similarity=0.252  Sum_probs=21.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+|++|+||||+++.++..+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            3 IYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999999763

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.76  E-value=0.00097  Score=54.95  Aligned_cols=22  Identities=36%  Similarity=0.653  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+|++|+||||+++.++..+
T Consensus         9 I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            9 VFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999876

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.75  E-value=0.005  Score=57.61  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++++|+||+||||+++.++..+
T Consensus       261 Iil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          261 VVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             EEEESCTTSSHHHHHHHHTGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8999999999999999998754

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.74  E-value=0.0023  Score=63.50  Aligned_cols=42  Identities=19%  Similarity=0.430  Sum_probs=30.8

Q ss_pred             CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      ++...+++..++....+  .+|.||||||||+++-.+...+...
T Consensus       191 N~~Q~~AV~~al~~~~~--~lI~GPPGTGKT~ti~~~I~~l~~~  232 (646)
T 4b3f_X          191 DTSQKEAVLFALSQKEL--AIIHGPPGTGKTTTVVEIILQAVKQ  232 (646)
T ss_dssp             CHHHHHHHHHHHHCSSE--EEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhcCCCc--eEEECCCCCCHHHHHHHHHHHHHhC
Confidence            66777778877765433  8999999999998776665555543

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=96.74  E-value=0.019  Score=50.99  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=29.3

Q ss_pred             CCceEEEEeCCCCCCH--HHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+++||||+|.+..  .....+..++...+.+..+++.|.....
T Consensus       234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~  279 (300)
T 3fmo_B          234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED  279 (300)
T ss_dssp             GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred             hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence            3557999999998654  3334455555555667777777776653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.74  E-value=0.0053  Score=58.14  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=21.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +++.|+||+||||++..++..+.
T Consensus       206 iiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          206 IIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999988664

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.73  E-value=0.00093  Score=56.71  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.9

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .++|.||+|+||||+++.++..+.
T Consensus         7 ~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            7 KVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999999773

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.73  E-value=0.00059  Score=55.88  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=17.5

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .++|+|++|+||||+++.+++.+.
T Consensus         7 ~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            7 IIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             EEEEECCC----CHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            389999999999999999998663

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.72  E-value=0.00081  Score=55.80  Aligned_cols=22  Identities=36%  Similarity=0.594  Sum_probs=21.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.|++|+||||+++.+++.+
T Consensus        15 I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           15 IFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999976

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.72  E-value=0.00082  Score=61.25  Aligned_cols=48  Identities=13%  Similarity=0.083  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      ..+++.+ .-+..|..  +.|.||+|+||||+++.|++. ..++.+.+.+.+
T Consensus        59 ~~ald~l-l~i~~Gq~--~gIiG~nGaGKTTLl~~I~g~-~~~~~g~i~~~G  106 (347)
T 2obl_A           59 VRAIDGL-LTCGIGQR--IGIFAGSGVGKSTLLGMICNG-ASADIIVLALIG  106 (347)
T ss_dssp             CHHHHHH-SCEETTCE--EEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEES
T ss_pred             CEEEEee-eeecCCCE--EEEECCCCCCHHHHHHHHhcC-CCCCEEEEEEec
Confidence            3556555 44555555  899999999999999999995 455555444433

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.72  E-value=0.00094  Score=56.10  Aligned_cols=22  Identities=45%  Similarity=0.827  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||+|.++.|++.+
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999976

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.69  E-value=0.0013  Score=56.38  Aligned_cols=23  Identities=35%  Similarity=0.652  Sum_probs=21.6

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|.|++|+||||+++.++..+
T Consensus        18 ~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           18 RAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999976

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=96.69  E-value=0.013  Score=49.45  Aligned_cols=44  Identities=11%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+++|+||+|.+... ....+..++...+.+..+++.|.....
T Consensus       154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~  198 (224)
T 1qde_A          154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN  198 (224)
T ss_dssp             TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred             hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCH
Confidence            45689999999976432 233455555555556777777766653

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=96.68  E-value=0.012  Score=53.89  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=28.5

Q ss_pred             CCCceEEEEeCCCCCCH--HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          128 KRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ..+.+++|+||+|.+..  .....+...+...+.+..+++.|..+.
T Consensus       143 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  188 (395)
T 3pey_A          143 LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA  188 (395)
T ss_dssp             CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred             cccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCC
Confidence            34568999999997654  223344445555555677777777665

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.67  E-value=0.00096  Score=62.78  Aligned_cols=49  Identities=16%  Similarity=0.148  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      ..+++.+ .-+..|..  +.|.||+|+||||+++.|++. ..++.+.+.+.+.
T Consensus       145 ~~vld~v-l~i~~Gq~--~~IvG~sGsGKSTLl~~Iag~-~~~~~G~i~~~G~  193 (438)
T 2dpy_A          145 VRAINAL-LTVGRGQR--MGLFAGSGVGKSVLLGMMARY-TRADVIVVGLIGE  193 (438)
T ss_dssp             CHHHHHH-SCCBTTCE--EEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESC
T ss_pred             ceEEeee-EEecCCCE--EEEECCCCCCHHHHHHHHhcc-cCCCeEEEEEece
Confidence            3455555 44445544  899999999999999999994 4666666666554

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.67  E-value=0.0014  Score=54.53  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||+|+||||+++.+++..
T Consensus        22 ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           22 LVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHhhC
Confidence            8999999999999999999853

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.67  E-value=0.001  Score=54.83  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+|++|+||||+++.+++.+
T Consensus         3 I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999976

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.67  E-value=0.0013  Score=53.74  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+|++|+||||+++.++..+
T Consensus         8 i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            8 VWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999976

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.67  E-value=0.0011  Score=54.54  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=21.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|.|++|+||||+++.++..+.
T Consensus        16 i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           16 VWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999774

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.67  E-value=0.0012  Score=71.31  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=21.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++|+||||+||||++..++..+..
T Consensus       735 VlI~G~PG~GKTtLal~lA~~aa~  758 (1706)
T 3cmw_A          735 VEIYGPESSGKTTLTLQVIAAAQR  758 (1706)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHH
Confidence            999999999999999999887654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.66  E-value=0.00099  Score=56.40  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=21.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|.|++|+||||+++.++..+
T Consensus         7 ~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            7 NLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999977

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=96.66  E-value=0.015  Score=51.04  Aligned_cols=41  Identities=10%  Similarity=0.071  Sum_probs=27.6

Q ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+++|+||+|.+...   .+..++........+++.|..+.+
T Consensus       224 ~~~~~vIiDEaH~~~~~---~~~~il~~~~~~~~~l~lSATp~~  264 (282)
T 1rif_A          224 SQFGMMMNDECHLATGK---SISSIISGLNNCMFKFGLSGSLRD  264 (282)
T ss_dssp             GGEEEEEEETGGGCCHH---HHHHHTTTCTTCCEEEEECSSCCT
T ss_pred             hhCCEEEEECCccCCcc---cHHHHHHHhhcCCeEEEEeCCCCC
Confidence            45689999999999865   344555554445666666666543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.64  E-value=0.002  Score=57.84  Aligned_cols=23  Identities=22%  Similarity=0.122  Sum_probs=21.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|.||+|+||||+++.+++.+.
T Consensus        95 igI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           95 IGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            89999999999999999998653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.64  E-value=0.00088  Score=57.11  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=21.2

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|.|++|+||||+++.++..+
T Consensus         9 ~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            9 RAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            38999999999999999999865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.64  E-value=0.00092  Score=61.10  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=27.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      +.|.||+|+||||+++.+++.+ .+..+.+.+.+.
T Consensus       160 i~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~  193 (359)
T 2og2_A          160 IMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAG  193 (359)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECC
T ss_pred             EEEEcCCCChHHHHHHHHHhhc-cccCCEEEEecc
Confidence            8999999999999999999965 445566666553

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.63  E-value=0.0012  Score=55.13  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|+|++|+||||+++.+++.+
T Consensus        17 ~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           17 VIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            38999999999999999999865

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.63  E-value=0.001  Score=55.89  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++|+|++|+||||+++.+++.+..
T Consensus        13 I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A           13 IVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999997643

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.63  E-value=0.0012  Score=55.84  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||+|.++.|++.+
T Consensus        32 I~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999999976

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.63  E-value=0.02  Score=51.38  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=21.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      +++.|+||+|||+++..++......
T Consensus        71 ~li~G~pG~GKTtl~l~ia~~~a~~   95 (315)
T 3bh0_A           71 VLIAARPSMGKTAFALKQAKNMSDN   95 (315)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            8999999999999999998765443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.62  E-value=0.0012  Score=54.43  Aligned_cols=22  Identities=36%  Similarity=0.754  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||+|+||||+++.+....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999987753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.62  E-value=0.00089  Score=56.07  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.|+||+|+||||+++.+++
T Consensus         5 i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            5 VGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999987

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.62  E-value=0.00096  Score=55.73  Aligned_cols=21  Identities=24%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|+|++|+||||+++.+++ +
T Consensus         4 i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            4 IGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEECCCCcCHHHHHHHHHH-C
Confidence            78999999999999999998 5

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.62  E-value=0.00048  Score=58.95  Aligned_cols=21  Identities=43%  Similarity=0.718  Sum_probs=14.6

Q ss_pred             EEEECCCCCcHHHHHHHHH-HH
Q 017844           37 LLFYGPPGSGKKTLIMALL-RQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la-~~   57 (365)
                      +.|+||+|+||||+++.++ +.
T Consensus        30 i~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           30 LVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEECSCC----CHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            8999999999999999999 74

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.00068  Score=64.20  Aligned_cols=42  Identities=14%  Similarity=0.053  Sum_probs=29.3

Q ss_pred             HHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCc-c-ceecc
Q 017844           26 KKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-K-VKVEN   70 (365)
Q Consensus        26 ~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~-~-i~~~~   70 (365)
                      ...+..|..  +.|.||+|+||||++++|++. ..+..+ . +.+++
T Consensus       132 sl~i~~Ge~--v~IvGpnGsGKSTLlr~L~Gl-~~p~~G~~pI~vdg  175 (460)
T 2npi_A          132 RMSNFEGPR--VVIVGGSQTGKTSLSRTLCSY-ALKFNAYQPLYINL  175 (460)
T ss_dssp             HHHSSSCCC--EEEEESTTSSHHHHHHHHHHT-THHHHCCCCEEEEC
T ss_pred             ceEeCCCCE--EEEECCCCCCHHHHHHHHhCc-ccccCCceeEEEcC
Confidence            333444544  999999999999999999994 334444 4 55443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.61  E-value=0.0092  Score=53.62  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++++||+|+||||++..+|..+..
T Consensus       108 I~ivG~~G~GKTT~~~~LA~~l~~  131 (320)
T 1zu4_A          108 FMLVGVNGTGKTTSLAKMANYYAE  131 (320)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999997643

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.61  E-value=0.0074  Score=60.10  Aligned_cols=42  Identities=12%  Similarity=0.180  Sum_probs=33.2

Q ss_pred             CceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS  171 (365)
Q Consensus       130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~  171 (365)
                      +++++++||+ ..|++.....+++++.+.. .+..+|+++++.+
T Consensus       564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~  607 (670)
T 3ux8_A          564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD  607 (670)
T ss_dssp             SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3579999998 7899999988888887764 3566777777765

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.60  E-value=0.0012  Score=56.07  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.|++|+||||+++.++..+
T Consensus         3 I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            3 ILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999876

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.58  E-value=0.0011  Score=55.86  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.|++|+||||+++.++..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999876

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.56  E-value=0.0025  Score=53.61  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .++|.|++|+||||+++.+++.+.
T Consensus        27 ~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           27 TIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            389999999999999999999764

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.56  E-value=0.0019  Score=54.14  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=27.7

Q ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCC
Q 017844          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSS  170 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~  170 (365)
                      .+..+|+|||++.++++....+.++. +  .+..+|+..-+.
T Consensus       100 ~~~dvV~IDEaQFf~~~~v~~l~~la-~--~gi~Vi~~GLd~  138 (219)
T 3e2i_A          100 TNVDVIGIDEVQFFDDEIVSIVEKLS-A--DGHRVIVAGLDM  138 (219)
T ss_dssp             TTCSEEEECCGGGSCTHHHHHHHHHH-H--TTCEEEEEEESB
T ss_pred             cCCCEEEEechhcCCHHHHHHHHHHH-H--CCCEEEEeeccc
Confidence            35689999999999987777666665 3  256666665443

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.55  E-value=0.0036  Score=63.41  Aligned_cols=42  Identities=24%  Similarity=0.192  Sum_probs=33.1

Q ss_pred             ceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCCc
Q 017844          131 FKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSK  172 (365)
Q Consensus       131 ~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~~  172 (365)
                      ++++|+||+ ..|+......+++.|.+.. ....+|+++++.+.
T Consensus       752 p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~  795 (842)
T 2vf7_A          752 GTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQV  795 (842)
T ss_dssp             CEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence            699999999 7899999999988888763 34567777776553

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=96.55  E-value=0.0066  Score=59.46  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=29.4

Q ss_pred             CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      |..++..+...+..+. .++++.+|.|+|||..+-.++..+..
T Consensus       183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~  224 (590)
T 3h1t_A          183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWS  224 (590)
T ss_dssp             HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHh
Confidence            4555555555554443 34899999999999998777776643

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.54  E-value=0.0012  Score=55.41  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+|++|+||||+++.++..+.
T Consensus        12 I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A           12 IVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.54  E-value=0.00055  Score=58.38  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=23.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      +.|.||+|+||||++++|+.. ..+..+.+.+++.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~-~~~~~G~i~~~g~   63 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTA-LIPDLTLLHFRNT   63 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHH-HSCCTTTC-----
T ss_pred             EEEECCCCCCHHHHHHHHhcc-cccCCCeEEECCE
Confidence            568899999999999999985 4555666655543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.54  E-value=0.032  Score=47.59  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .++|.|++|+||||++..+.+.
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            3999999999999999998763

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.53  E-value=0.0016  Score=54.96  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++.+....++......+.+.+++.|++|+||||++..++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            455666677776666666679999999999999999998875

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.52  E-value=0.00077  Score=61.25  Aligned_cols=34  Identities=35%  Similarity=0.357  Sum_probs=26.3

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCCCCccceecc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVEN   70 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~   70 (365)
                      .+.|.||||+||||+++.+++.+ .+..+.+.+.+
T Consensus        57 ~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~~   90 (337)
T 2qm8_A           57 RVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVLA   90 (337)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEEE
Confidence            38999999999999999999854 34445555544

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.52  E-value=0.0012  Score=54.97  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.|++|+||||+++.+++.+
T Consensus         7 I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            7 IVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             EEEECCTTSSHHHHHHHHHHTS
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999865

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.48  E-value=0.0084  Score=49.87  Aligned_cols=41  Identities=12%  Similarity=0.163  Sum_probs=20.5

Q ss_pred             cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 017844           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++...+.+.......+.-.+++.|++|+||||+++.+...
T Consensus        13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            34455555544444443334999999999999999988763

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.48  E-value=0.0016  Score=58.48  Aligned_cols=23  Identities=22%  Similarity=0.138  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|.||+|+||||+++.|++.+.
T Consensus        93 vgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           93 IGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCchHHHHHHHHHhhcc
Confidence            89999999999999999999654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.48  E-value=0.0015  Score=56.64  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=21.0

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .+.|.||+|+||||+++.+++.+
T Consensus        29 ~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           29 VITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            38999999999999999999765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.48  E-value=0.0099  Score=52.96  Aligned_cols=21  Identities=43%  Similarity=0.634  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.||+|+|||||++.+++.
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999998764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.45  E-value=0.0018  Score=52.94  Aligned_cols=23  Identities=30%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .+|+||+|+||||++++|...+.
T Consensus        29 ~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           29 TAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            79999999999999999988654

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=96.43  E-value=0.022  Score=48.44  Aligned_cols=44  Identities=18%  Similarity=0.359  Sum_probs=28.4

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+++|+||+|.+... ....+..+++..+....+++.|.....
T Consensus       170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~  214 (236)
T 2pl3_A          170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTK  214 (236)
T ss_dssp             TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCH
T ss_pred             ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCH
Confidence            45679999999976432 234455666666656666766666553

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.43  E-value=0.0019  Score=55.23  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=21.3

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .+.|.||+|+||||+++.+++.+
T Consensus        11 ~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           11 VVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999876

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=96.42  E-value=0.0039  Score=58.30  Aligned_cols=37  Identities=16%  Similarity=0.056  Sum_probs=27.2

Q ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          131 FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       131 ~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+++||||+.+++......++..+.    ...+|++.....
T Consensus       235 ~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~~Q  271 (446)
T 3vkw_A          235 FKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDTQQ  271 (446)
T ss_dssp             CSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECTTS
T ss_pred             CCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCccc
Confidence            5899999999999887776666543    266777776543

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=96.41  E-value=0.025  Score=48.03  Aligned_cols=43  Identities=21%  Similarity=0.339  Sum_probs=26.1

Q ss_pred             CCceEEEEeCCCCCCHH--HHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSRE--AQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~--~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+.+++|+||+|.+...  ....+..++...+....+++.|....
T Consensus       165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~  209 (230)
T 2oxc_A          165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYP  209 (230)
T ss_dssp             GGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred             ccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccC
Confidence            34579999999976322  23344445555555666666665554

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.39  E-value=0.0018  Score=55.67  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=24.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceec
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVE   69 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~   69 (365)
                      ++++||||+||||++..++..+.......++++
T Consensus        26 ~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            899999999999999888776544433334433

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.36  E-value=0.0038  Score=52.82  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++..+.++......+.+.+++.|++|+||||++..++.....
T Consensus        23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            444566666666565666899999999999999999987643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.33  E-value=0.0051  Score=49.38  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+.+
T Consensus         7 i~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            7 VVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHhc
Confidence            89999999999999998865

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.32  E-value=0.0011  Score=61.88  Aligned_cols=36  Identities=33%  Similarity=0.478  Sum_probs=29.9

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++.+...+..|..+++.|.||+|+|||||+++|++.
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            667777777777766899999999999999999885

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=96.32  E-value=0.036  Score=51.17  Aligned_cols=43  Identities=23%  Similarity=0.393  Sum_probs=27.4

Q ss_pred             CCceEEEEeCCCCCC--HHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+.+++|+||+|.+.  ......+..++...+.+..+++.|..+.
T Consensus       167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  211 (412)
T 3fht_A          167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE  211 (412)
T ss_dssp             GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred             hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecC
Confidence            456899999999653  2233344445555556677777777655

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.31  E-value=0.0023  Score=55.54  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|+|++|+||||+++.++..+.
T Consensus        25 I~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           25 IGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            89999999999999999998663

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.31  E-value=0.00064  Score=55.33  Aligned_cols=35  Identities=31%  Similarity=0.359  Sum_probs=25.0

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCCC--Cccceecc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVFGPG--AEKVKVEN   70 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~~~--~~~i~~~~   70 (365)
                      .+.|.|++|+||||+++.+++.+....  .+.+.+++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg   40 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA   40 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence            378999999999999999999653221  44455544

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=96.31  E-value=0.027  Score=50.97  Aligned_cols=43  Identities=14%  Similarity=0.330  Sum_probs=28.4

Q ss_pred             CCceEEEEeCCCCCCH-HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~-~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+.+++|+||+|.+.. .....+...+...+....+++.|..+.
T Consensus       146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  189 (367)
T 1hv8_A          146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMP  189 (367)
T ss_dssp             TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred             ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccC
Confidence            4568999999987632 223445556655556677777777665

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.30  E-value=0.0024  Score=53.24  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .+.|+|++|+||||+++.+++.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            48899999999999999999976

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.29  E-value=0.0028  Score=52.51  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|+|++|+||||+++.++..+
T Consensus        15 IgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           15 IGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8899999999999999999864

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=96.27  E-value=0.042  Score=46.38  Aligned_cols=44  Identities=16%  Similarity=0.289  Sum_probs=28.8

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+++|+||+|.+... ....+..++...+.+..+++.|.....
T Consensus       166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~  210 (228)
T 3iuy_A          166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPD  210 (228)
T ss_dssp             TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCH
T ss_pred             ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCH
Confidence            45689999999976533 234455556665666777777666553

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.26  E-value=0.0034  Score=50.77  Aligned_cols=26  Identities=23%  Similarity=0.176  Sum_probs=22.5

Q ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844           34 CPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .+-+.|.|++|+||||++..++..+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            34489999999999999999998764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.25  E-value=0.0018  Score=54.30  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.++|++|+||||+++.+++.+
T Consensus        24 i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           24 IGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             EEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8899999999999999998843

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=96.24  E-value=0.014  Score=49.81  Aligned_cols=43  Identities=19%  Similarity=0.354  Sum_probs=27.9

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ...+++|+||+|.+... ....+..++...+....+++.|....
T Consensus       172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~  215 (237)
T 3bor_A          172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP  215 (237)
T ss_dssp             TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred             ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence            35689999999976432 23345555555555677777776655

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=96.24  E-value=0.022  Score=49.11  Aligned_cols=44  Identities=18%  Similarity=0.339  Sum_probs=28.2

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      ...+++|+||+|.+... ....+.+++...+....+++.|.....
T Consensus       185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~  229 (249)
T 3ber_A          185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK  229 (249)
T ss_dssp             TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCH
T ss_pred             cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCH
Confidence            45679999999976432 233455566655556667776666553

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.22  E-value=0.041  Score=43.35  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||++..+...
T Consensus         6 i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999998763

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=96.22  E-value=0.028  Score=46.53  Aligned_cols=43  Identities=16%  Similarity=0.279  Sum_probs=27.7

Q ss_pred             CCceEEEEeCCCCCCH-HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~-~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+.+++|+||+|.+.. .....+..++...+.+..+++.|....
T Consensus       145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~  188 (206)
T 1vec_A          145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP  188 (206)
T ss_dssp             TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred             ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence            4568999999986543 334445555555555667777766655

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.21  E-value=0.0011  Score=55.62  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|.|++|+||||+++.+++.+.
T Consensus         3 I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.21  E-value=0.0025  Score=57.14  Aligned_cols=22  Identities=36%  Similarity=0.703  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||+|+||||+++.+++.+
T Consensus         8 i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            8 IFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8999999999999999999975

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.20  E-value=0.0029  Score=54.01  Aligned_cols=24  Identities=38%  Similarity=0.681  Sum_probs=21.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++|.||+|+||||+++.+++.+..
T Consensus        29 i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           29 ITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHhc
Confidence            899999999999999999997743

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.19  E-value=0.0027  Score=52.70  Aligned_cols=22  Identities=32%  Similarity=0.268  Sum_probs=20.2

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+.|+|++|+||||+++.+++.
T Consensus        10 ~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           10 IIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            3899999999999999999984

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.19  E-value=0.0038  Score=60.43  Aligned_cols=42  Identities=26%  Similarity=0.435  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHH--cCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           19 QDIAQNLKKLVT--EQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        19 ~~~~~~l~~~l~--~~~~~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      .++.+.++....  -.+...+.|+|++|+||||+++++++.+..
T Consensus       352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            455555555431  112223899999999999999999997743

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.16  E-value=0.012  Score=46.63  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus         7 i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.14  E-value=0.0097  Score=47.00  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+.+.
T Consensus         6 i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.13  E-value=0.0036  Score=49.53  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      .+|+||+|+||||++.++.-.+..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~~l~g   49 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILVGLYW   49 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC
Confidence            799999999999999999876644

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.13  E-value=0.0056  Score=54.59  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=23.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCcccee
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV   68 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~   68 (365)
                      +.|.||+|+||||++++++  +..+..+.+.+
T Consensus       168 ~~l~G~sG~GKSTLln~l~--~~~~~~G~i~~  197 (302)
T 2yv5_A          168 CILAGPSGVGKSSILSRLT--GEELRTQEVSE  197 (302)
T ss_dssp             EEEECSTTSSHHHHHHHHH--SCCCCCSCC--
T ss_pred             EEEECCCCCCHHHHHHHHH--HhhCccccccc
Confidence            7899999999999999998  55666666554

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.11  E-value=0.0022  Score=57.67  Aligned_cols=39  Identities=26%  Similarity=0.341  Sum_probs=28.7

Q ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhc-------CCCCccceecccc
Q 017844           34 CPHLLFYGPPGSGKKTLIMALLRQVF-------GPGAEKVKVENKT   72 (365)
Q Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l~-------~~~~~~i~~~~~~   72 (365)
                      .+-++|+|++|+||||+++.+++...       .++.+.+.+++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~   49 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL   49 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH
Confidence            34489999999999999999998431       3455666666543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.10  E-value=0.0035  Score=55.74  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|.|+||+||||+++.++..
T Consensus         5 I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            5 ILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999984

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.09  E-value=0.021  Score=46.36  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus        10 i~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A           10 IVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999999874

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=96.07  E-value=0.12  Score=47.48  Aligned_cols=43  Identities=9%  Similarity=0.250  Sum_probs=26.4

Q ss_pred             CCceEEEEeCCCCCCH-HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~-~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+.+++|+||+|.+.. .....+..++...+....+++.|....
T Consensus       162 ~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~  205 (400)
T 1s2m_A          162 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP  205 (400)
T ss_dssp             TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred             ccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCC
Confidence            4568999999996644 333444444444455566666655544

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.06  E-value=0.0071  Score=57.78  Aligned_cols=42  Identities=12%  Similarity=0.177  Sum_probs=31.6

Q ss_pred             CHHHHHHHHHHHH--cCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844           18 HQDIAQNLKKLVT--EQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        18 ~~~~~~~l~~~l~--~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .+++.+.++....  ......++|+|.+|+||||+++++++.|.
T Consensus       377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            3566667766652  22223499999999999999999999885

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=96.06  E-value=0.024  Score=47.63  Aligned_cols=44  Identities=9%  Similarity=0.194  Sum_probs=27.9

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      ...+++|+||+|.+... ....+..++...+.+..+++.|.....
T Consensus       149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~  193 (219)
T 1q0u_A          149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPE  193 (219)
T ss_dssp             GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred             CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCH
Confidence            34579999999976532 233455556655556667766666554

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.05  E-value=0.0042  Score=50.59  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=21.9

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhc
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +-+.|.|++|+||||+++.+++.+.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            4489999999999999999998754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.05  E-value=0.0035  Score=52.87  Aligned_cols=20  Identities=35%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.|+|++|+||||+++.++.
T Consensus         7 I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            7 VALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999987

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=96.05  E-value=0.012  Score=51.15  Aligned_cols=44  Identities=14%  Similarity=0.365  Sum_probs=28.4

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+++|+||+|.+... ....+..++...+....+++.|....+
T Consensus       200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~  244 (262)
T 3ly5_A          200 KNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR  244 (262)
T ss_dssp             TTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCH
T ss_pred             ccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCH
Confidence            45689999999976543 233455555555556777777666553

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=96.01  E-value=0.03  Score=53.20  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=29.1

Q ss_pred             CCceEEEEeCCCCCCH--HHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+++||||+|.+..  .....+..++...+.+..+|+.|..+..
T Consensus       234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~  279 (479)
T 3fmp_B          234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED  279 (479)
T ss_dssp             GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH
T ss_pred             ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH
Confidence            4568999999996632  3334445555555667778888777664

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.00  E-value=0.018  Score=45.83  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+.+.
T Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            9 VCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            899999999999999999774

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.98  E-value=0.0033  Score=57.73  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      +.|.||+|+||||+++.|++. ..+.
T Consensus       173 ~~IvG~nGsGKSTLlk~L~gl-~~~~  197 (365)
T 1lw7_A          173 VAILGGESSGKSVLVNKLAAV-FNTT  197 (365)
T ss_dssp             EEEECCTTSHHHHHHHHHHHH-TTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHH-hCCC
Confidence            899999999999999999995 4443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.98  E-value=0.018  Score=47.54  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=19.7

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+++.|++|+||||++..+...
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.98  E-value=0.0029  Score=56.49  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=21.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCcccee
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV   68 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~   68 (365)
                      +.|.||+|+||||+++++++ +..+..+.+.+
T Consensus       172 v~l~G~sG~GKSTll~~l~g-~~~~~~G~i~~  202 (301)
T 1u0l_A          172 STMAGLSGVGKSSLLNAINP-GLKLRVSEVSE  202 (301)
T ss_dssp             EEEECSTTSSHHHHHHHHST-TCCCC------
T ss_pred             EEEECCCCCcHHHHHHHhcc-cccccccceec
Confidence            78999999999999999988 44555555544

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.97  E-value=0.013  Score=47.78  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||++..++..
T Consensus        24 i~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           24 LVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            899999999999999999864

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=95.97  E-value=0.023  Score=48.59  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      .+.+++|+||+|.+... ....+..+++..+.+..+++.|.....
T Consensus       175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~  219 (242)
T 3fe2_A          175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK  219 (242)
T ss_dssp             TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCH
T ss_pred             ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCH
Confidence            45689999999976543 234455566666666777777666553

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.95  E-value=0.0015  Score=59.61  Aligned_cols=22  Identities=41%  Similarity=0.610  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.||+|+|||||+++|++..
T Consensus       218 ~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          218 SIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEECCCCccHHHHHHHHhccc
Confidence            8999999999999999998743

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=95.95  E-value=0.047  Score=52.23  Aligned_cols=37  Identities=11%  Similarity=0.077  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.....+..++..   .+.++.||.|+|||..+-.++...
T Consensus       116 ~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~  152 (510)
T 2oca_A          116 WYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY  152 (510)
T ss_dssp             HHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence            4444445555543   348999999999999987766654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.95  E-value=0.0038  Score=54.96  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+||||+||||+++.++..+.
T Consensus        33 ~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           33 GALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999998654

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=95.94  E-value=0.036  Score=52.00  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=16.7

Q ss_pred             CeEEEECCCCCcHHHHH-HHHH
Q 017844           35 PHLLFYGPPGSGKKTLI-MALL   55 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla-~~la   55 (365)
                      .++++.||+|+|||..+ ..+.
T Consensus         3 ~~~lv~a~TGsGKT~~~l~~~l   24 (431)
T 2v6i_A            3 ELTVLDLHPGAGKTRRVLPQLV   24 (431)
T ss_dssp             CEEEEECCTTSCTTTTHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            34899999999999975 4444

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.94  E-value=0.0043  Score=51.44  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +++.|++|+||||+++.+++..
T Consensus         8 v~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            8 VVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998843

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.93  E-value=0.029  Score=46.13  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=18.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+++.|++|+||||+++.+.+
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            399999999999999987654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.93  E-value=0.016  Score=46.88  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus        21 i~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           21 VIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            999999999999999998863

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.92  E-value=0.027  Score=45.49  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus         8 i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            8 CVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999998763

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.92  E-value=0.0055  Score=54.44  Aligned_cols=22  Identities=32%  Similarity=0.670  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||+|+|||+++..+++.+
T Consensus        13 i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           13 IFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCccCHHHHHHHHHHhC
Confidence            8899999999999999999875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.91  E-value=0.004  Score=51.35  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.|++|+||||+++.+++..
T Consensus        32 v~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           32 VVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998854

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.88  E-value=0.0065  Score=51.99  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .+.|+|++|+||||+++.+++.+
T Consensus        18 ~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           18 QIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            38999999999999999999866

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.86  E-value=0.029  Score=53.27  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=22.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      +++.|.+|+||||+++.+++.+...
T Consensus        42 IvlvGlpGsGKSTia~~La~~l~~~   66 (469)
T 1bif_A           42 IVMVGLPARGKTYISKKLTRYLNFI   66 (469)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhcc
Confidence            8999999999999999999987543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.86  E-value=0.0047  Score=55.73  Aligned_cols=22  Identities=27%  Similarity=0.620  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||+|+||||+++.++..+
T Consensus        10 I~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A           10 IVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcCcHHHHHHHHHHHc
Confidence            8999999999999999999976

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.82  E-value=0.032  Score=46.41  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus        31 i~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           31 IVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            999999999999999999874

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=95.81  E-value=0.1  Score=48.95  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=28.0

Q ss_pred             CCCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          128 KRGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ..+..++|+||+|.+... ....+...+........+++.|..+.
T Consensus       123 ~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~  167 (494)
T 1wp9_A          123 LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG  167 (494)
T ss_dssp             TTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC
T ss_pred             hhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC
Confidence            346789999999988632 34445555555444555666655554

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.77  E-value=0.004  Score=51.52  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||+|+|||+++..+++..
T Consensus        37 ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           37 VLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999998753

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=95.76  E-value=0.14  Score=46.71  Aligned_cols=44  Identities=14%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             CCCceEEEEeCCCCCCH--HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          128 KRGFKVLVLNEVDKLSR--EAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~~--~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ..+.+++|+||+|.+..  .....+...+...+....+++.|..+.
T Consensus       150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  195 (391)
T 1xti_A          150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS  195 (391)
T ss_dssp             CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCC
T ss_pred             ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCC
Confidence            34668999999997753  444555666665555666777666554

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.76  E-value=0.12  Score=43.15  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=19.9

Q ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Q 017844           34 CPHLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        34 ~~~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+.+++.|++|+||||++..+.+
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~   51 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCN   51 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhC
Confidence            34599999999999999998865

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.75  E-value=0.047  Score=44.57  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+.+.
T Consensus        21 i~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           21 CVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999999874

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.74  E-value=0.0073  Score=51.35  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|.||||+||||.++.++..+.
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eeeECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999999763

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.74  E-value=0.032  Score=44.70  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus        18 i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           18 YIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            999999999999999999764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.72  E-value=0.008  Score=50.23  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      .+|+||+|+||||++.+|.-.+.+
T Consensus        26 ~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            799999999999999999877654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.70  E-value=0.013  Score=47.91  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=20.1

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+++.|++|+||||++..+.+.
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4999999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.70  E-value=0.0043  Score=55.89  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.7

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .++|.||+|+|||+++..+|+.+.
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHCC
Confidence            389999999999999999998763

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.69  E-value=0.0071  Score=54.52  Aligned_cols=24  Identities=38%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++|+||||+|||+++..++.....
T Consensus       110 ~~i~G~~GsGKT~la~~la~~~~~  133 (324)
T 2z43_A          110 TEFFGEFGSGKTQLCHQLSVNVQL  133 (324)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             EEEECCCCCCHhHHHHHHHHHHhc
Confidence            899999999999999999886543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.69  E-value=0.022  Score=46.18  Aligned_cols=21  Identities=33%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+.+.
T Consensus         7 i~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            7 LVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999999864

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A

Probab=95.66  E-value=0.051  Score=53.39  Aligned_cols=43  Identities=7%  Similarity=0.119  Sum_probs=26.6

Q ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~  171 (365)
                      .+.+++||||+|.++......+..+++..+ .+..+++.|..+.
T Consensus       276 ~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~  319 (618)
T 2whx_A          276 PNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP  319 (618)
T ss_dssp             CCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCT
T ss_pred             cCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCc
Confidence            456899999999997654443333333322 4566666665543

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=95.66  E-value=0.023  Score=56.99  Aligned_cols=20  Identities=35%  Similarity=0.471  Sum_probs=16.7

Q ss_pred             CeEEEECCCCCcHHHHHHHH
Q 017844           35 PHLLFYGPPGSGKKTLIMAL   54 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~l   54 (365)
                      .++++.||+|+|||+.+-..
T Consensus        47 ~~~lv~apTGsGKT~~~~l~   66 (715)
T 2va8_A           47 NRLLLTSPTGSGKTLIAEMG   66 (715)
T ss_dssp             CCEEEECCTTSCHHHHHHHH
T ss_pred             CcEEEEcCCCCcHHHHHHHH
Confidence            34999999999999998443

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.66  E-value=0.047  Score=45.64  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus        30 i~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           30 LVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            999999999999999998764

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.66  E-value=0.041  Score=51.32  Aligned_cols=25  Identities=32%  Similarity=0.332  Sum_probs=22.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      +++.|++|+||||++..++..+...
T Consensus       101 i~i~G~~GsGKTT~~~~LA~~l~~~  125 (425)
T 2ffh_A          101 WFLVGLQGSGKTTTAAKLALYYKGK  125 (425)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            8889999999999999999976543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.65  E-value=0.14  Score=41.96  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=19.9

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+++.|++|+||||+++.+.+.
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3999999999999999999874

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.65  E-value=0.089  Score=49.25  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=21.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      ++++|++|+||||++-.+|..+...
T Consensus       103 I~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A          103 VLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHh
Confidence            8889999999999999999877543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.60  E-value=0.013  Score=53.13  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||||+|||+++..++...
T Consensus       125 ~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          125 TEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             EEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.58  E-value=0.041  Score=44.97  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+.+.
T Consensus        26 i~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           26 IVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            999999999999999999874

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.58  E-value=0.041  Score=44.77  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|.|++|+||||+++.+...
T Consensus        23 i~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           23 VGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            999999999999999888764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.57  E-value=0.0086  Score=54.92  Aligned_cols=26  Identities=38%  Similarity=0.694  Sum_probs=22.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      .+|+||+|+||||+..+|+-.+++..
T Consensus        26 ~~i~G~NGaGKTTll~ai~~al~g~~   51 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAISFALFGNG   51 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCc
Confidence            78999999999999999998776543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.57  E-value=0.024  Score=46.53  Aligned_cols=22  Identities=32%  Similarity=0.712  Sum_probs=19.9

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+++.|++|+||||+++.+...
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4999999999999999998774

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.55  E-value=0.0059  Score=53.86  Aligned_cols=20  Identities=35%  Similarity=0.433  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.|+|++|+||||+++.++.
T Consensus        78 I~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           78 LGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999984

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.55  E-value=0.026  Score=46.15  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +++.|++|+||||+++.+.+.-
T Consensus        26 i~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            8999999999999999998753

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.55  E-value=0.0078  Score=50.66  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|+|++|+||||+++.++..+
T Consensus         6 i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            6 IALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8999999999999999999865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.53  E-value=0.04  Score=44.30  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+++.|++|+||||+++.+...
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4999999999999999998763

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.53  E-value=0.0083  Score=47.37  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.2

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      +.+++.|++|+||||+++.+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            34899999999999999999864

>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1

Probab=95.52  E-value=0.16  Score=53.68  Aligned_cols=39  Identities=15%  Similarity=0.103  Sum_probs=27.2

Q ss_pred             CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH
Q 017844           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~   56 (365)
                      |..++..+.....+++..+.+++||.|+|||..+...+-
T Consensus       608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~  646 (1151)
T 2eyq_A          608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF  646 (1151)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHH
Confidence            455555555555556655699999999999988764443

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.51  E-value=0.039  Score=44.26  Aligned_cols=21  Identities=33%  Similarity=0.662  Sum_probs=18.8

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+++.|++|+||||+++.+.+
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            389999999999999998864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.50  E-value=0.0088  Score=50.39  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=22.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +.|.|++|+||||.++.++..+..
T Consensus         9 i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            9 VTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999998754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.50  E-value=0.11  Score=49.44  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=21.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+|++|+||||++..++..+.
T Consensus       104 I~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W          104 IMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998664

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.50  E-value=0.17  Score=40.50  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=19.1

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+++.|++|+||||+++.+..
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            389999999999999999875

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.48  E-value=0.054  Score=44.97  Aligned_cols=21  Identities=14%  Similarity=0.287  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus        12 i~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           12 CVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999998764

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=95.48  E-value=0.12  Score=43.99  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=26.9

Q ss_pred             CCceEEEEeCCCCCCH----HHHHHHHHHHhhh-cCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKY-SASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~----~~~~~Ll~~le~~-~~~~~~Il~t~~~~  171 (365)
                      .+.+++|+||+|.+..    .....+..++... +.+..+++.|....
T Consensus       174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~  221 (245)
T 3dkp_A          174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFA  221 (245)
T ss_dssp             TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCC
T ss_pred             ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCC
Confidence            4568999999998754    2344555555443 23556666665554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.45  E-value=0.032  Score=49.52  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +++.|++|+||||++..++..+.
T Consensus       101 i~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F          101 IMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             EEEECSSCSSTTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            88899999999999999998664

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=95.45  E-value=0.021  Score=56.25  Aligned_cols=40  Identities=23%  Similarity=0.462  Sum_probs=29.6

Q ss_pred             CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++.....+...+. +  +..++.||||||||+++..++..+..
T Consensus       182 n~~Q~~av~~~l~-~--~~~li~GppGTGKT~~~~~~i~~l~~  221 (624)
T 2gk6_A          182 NHSQVYAVKTVLQ-R--PLSLIQGPPGTGKTVTSATIVYHLAR  221 (624)
T ss_dssp             CHHHHHHHHHHHT-C--SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhc-C--CCeEEECCCCCCHHHHHHHHHHHHHH
Confidence            4555666666553 2  34899999999999998888777654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.43  E-value=0.011  Score=50.13  Aligned_cols=25  Identities=32%  Similarity=0.321  Sum_probs=22.3

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      .+.|.|++|+||||+++.++..+..
T Consensus        23 ~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           23 FITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3899999999999999999998743

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=95.41  E-value=0.071  Score=53.28  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=28.5

Q ss_pred             CCceEEEEeCCCCCC----HHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLS----REAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~----~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+.+++|+||+|.+.    ....+.++..+.....+.++|+.|....
T Consensus       137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~  183 (702)
T 2p6r_A          137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP  183 (702)
T ss_dssp             GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT
T ss_pred             hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC
Confidence            356899999999864    2334455555554455677888777655

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.39  E-value=0.012  Score=57.39  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=21.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+|++|+||||+++.+++.+.
T Consensus       399 I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          399 IFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEeecCCCCCHHHHHHHHHHHhc
Confidence            89999999999999999999874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.37  E-value=0.0086  Score=48.30  Aligned_cols=20  Identities=35%  Similarity=0.561  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.|++|+||||++..+..
T Consensus        19 vli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           19 VLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.37  E-value=0.11  Score=53.11  Aligned_cols=42  Identities=17%  Similarity=0.197  Sum_probs=33.2

Q ss_pred             CceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCC
Q 017844          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSS  171 (365)
Q Consensus       130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~  171 (365)
                      +++++|+||+ ..|+......+++.|.+.. ....+|+++++.+
T Consensus       826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~  869 (916)
T 3pih_A          826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD  869 (916)
T ss_dssp             SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            3589999999 7899999999999888763 3456777777754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.37  E-value=0.0044  Score=54.98  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|+||+|+||||+++.++..+.
T Consensus         8 IgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            8 ISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             EEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999998653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.36  E-value=0.022  Score=51.85  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=21.0

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .+.|.|+||+||||+++.+++.+
T Consensus        76 ~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           76 RVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            39999999999999999999865

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.34  E-value=0.067  Score=48.76  Aligned_cols=21  Identities=38%  Similarity=0.593  Sum_probs=19.1

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+++.|++|+||||++..+++
T Consensus       169 ~v~lvG~~gvGKSTLin~L~~  189 (357)
T 2e87_A          169 TVVIAGHPNVGKSTLLKALTT  189 (357)
T ss_dssp             EEEEECSTTSSHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            399999999999999999865

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.32  E-value=0.0097  Score=47.58  Aligned_cols=20  Identities=35%  Similarity=0.562  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.+.|++|+||||+++.+++
T Consensus         6 v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            6 IALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999976

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.29  E-value=0.0051  Score=52.48  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +.|.||+|+||||+++.+++.
T Consensus        23 i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           23 VLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEECSTTSCHHHHHHTTGGG
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            899999999999999999874

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.28  E-value=0.079  Score=49.82  Aligned_cols=23  Identities=13%  Similarity=0.315  Sum_probs=21.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +++.|+||+|||+++..++....
T Consensus       203 ~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          203 NIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999988654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.28  E-value=0.0079  Score=51.19  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|.|++|+||||.++.++..+.
T Consensus        28 I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           28 ITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             EEEECCC---CHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999874

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.25  E-value=0.033  Score=50.74  Aligned_cols=26  Identities=35%  Similarity=0.395  Sum_probs=22.6

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +.+.|+|++|+||||++..++..+..
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l~~  105 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHLIE  105 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            34999999999999999999987644

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=95.25  E-value=0.03  Score=56.17  Aligned_cols=40  Identities=15%  Similarity=0.240  Sum_probs=25.4

Q ss_pred             CCceEEEEeCCCCCCH----HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSR----EAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~----~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+.+++|+||+|.+..    ...+.++..+.   .+.++|+.|....
T Consensus       137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---~~~~ii~lSATl~  180 (720)
T 2zj8_A          137 KDVKILVADEIHLIGSRDRGATLEVILAHML---GKAQIIGLSATIG  180 (720)
T ss_dssp             GGEEEEEEETGGGGGCTTTHHHHHHHHHHHB---TTBEEEEEECCCS
T ss_pred             hcCCEEEEECCcccCCCcccHHHHHHHHHhh---cCCeEEEEcCCcC
Confidence            4668999999997742    22334444443   2677777776654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.25  E-value=0.0087  Score=48.81  Aligned_cols=20  Identities=45%  Similarity=0.813  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+++
T Consensus         5 v~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            89999999999999999876

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=95.23  E-value=0.066  Score=45.05  Aligned_cols=21  Identities=33%  Similarity=0.638  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|.|.+|+|||+|+..+...
T Consensus        16 ivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           16 LVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCcCHHHHHHHHHhC
Confidence            899999999999999988763

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.21  E-value=0.063  Score=44.23  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus        28 i~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           28 LVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999998864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.19  E-value=0.5  Score=41.79  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=19.5

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+.+.|.||+|||||+..+.+.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999998763

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.19  E-value=0.059  Score=44.49  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus        32 i~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           32 LVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhhC
Confidence            899999999999999998763

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.16  E-value=0.019  Score=55.56  Aligned_cols=41  Identities=20%  Similarity=0.254  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHc-CCCCe-EEEECCCCCcHHHHHHHHHHHhc
Q 017844           19 QDIAQNLKKLVTE-QDCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        19 ~~~~~~l~~~l~~-~~~~~-lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +++.+.++..... +..+. ++|+|++|+||||+++.+++.+.
T Consensus       355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            4566666666521 22223 89999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.15  E-value=0.015  Score=48.76  Aligned_cols=20  Identities=30%  Similarity=0.644  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+..
T Consensus        37 i~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           37 VVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHc
Confidence            99999999999999999875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.13  E-value=0.01  Score=50.85  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.|+.|+||||+++.++..+
T Consensus         5 i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            5 LSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            8999999999999999999976

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.13  E-value=0.018  Score=53.22  Aligned_cols=30  Identities=23%  Similarity=0.345  Sum_probs=24.8

Q ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           33 DCPHLLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      ..+|+++.||+|+||||+++.++..+....
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~   63 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG   63 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            446799999999999999999988765433

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.12  E-value=0.012  Score=50.40  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +.|.|++|+||||+++.++..+..
T Consensus        30 i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           30 IVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             EEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            899999999999999999997743

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=95.10  E-value=0.068  Score=49.34  Aligned_cols=43  Identities=16%  Similarity=0.347  Sum_probs=29.4

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ...+++|+||+|.+... ....+...+...+.+..+|+.|..+.
T Consensus       182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~  225 (414)
T 3eiq_A          182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP  225 (414)
T ss_dssp             TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred             ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence            34679999999976432 23455666666666777888777764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.09  E-value=0.046  Score=44.95  Aligned_cols=22  Identities=18%  Similarity=0.395  Sum_probs=19.0

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+++.|++|+||||+++.+.+.
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999988753

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=95.08  E-value=0.12  Score=47.77  Aligned_cols=43  Identities=19%  Similarity=0.336  Sum_probs=28.6

Q ss_pred             CCceEEEEeCCCCCCH-HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSR-EAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~-~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ...+++|+||+|.+.. .....+...+...+....+++.|....
T Consensus       178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~  221 (410)
T 2j0s_A          178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP  221 (410)
T ss_dssp             TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred             hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCC
Confidence            4568999999986543 334455666665556677777776654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.07  E-value=0.0038  Score=51.87  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=20.3

Q ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Q 017844           32 QDCPHLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        32 ~~~~~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+.-.+++.|++|+||||+++.+..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            3333489999999999999988865

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.06  E-value=0.014  Score=46.38  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+.+.
T Consensus         8 i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            8 MVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            899999999999999999874

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.05  E-value=0.012  Score=54.26  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||+|+||||++..++..+
T Consensus         5 i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            5 IVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHH
T ss_pred             EEEECcchhhHHHHHHHHHHHC
Confidence            7899999999999999999976

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.04  E-value=0.011  Score=48.06  Aligned_cols=20  Identities=35%  Similarity=0.562  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+++
T Consensus        10 i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A           10 IALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999976

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.02  E-value=0.13  Score=48.21  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=20.0

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+.|.|+||+|||||++.+++.
T Consensus       182 kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999874

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.01  E-value=0.017  Score=52.36  Aligned_cols=25  Identities=40%  Similarity=0.634  Sum_probs=21.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      .+|+||+|+||||++.+|+-.+..+
T Consensus        26 ~~i~G~NGsGKS~lleAi~~~l~~~   50 (339)
T 3qkt_A           26 NLIIGQNGSGKSSLLDAILVGLYWP   50 (339)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCC
Confidence            7899999999999999997766553

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A

Probab=95.00  E-value=0.048  Score=51.55  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=17.1

Q ss_pred             eEEEECCCCCcHHHH-HHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTL-IMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtl-a~~la~~l   58 (365)
                      ++++.||+|+|||+. +..+...+
T Consensus        23 ~vlv~a~TGsGKT~~~~l~il~~~   46 (459)
T 2z83_A           23 MTVLDLHPGSGKTRKILPQIIKDA   46 (459)
T ss_dssp             EEEECCCTTSCTTTTHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHH
Confidence            499999999999996 34444433

>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20

Probab=94.99  E-value=0.42  Score=36.95  Aligned_cols=71  Identities=13%  Similarity=0.065  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceEEEEeCCCC-CCHHHHHHHHHHHhhhcCceeEEEEecCCC------cccHHHhccce
Q 017844          110 VQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSSS------KVTEAIRSRCL  182 (365)
Q Consensus       110 ~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~-L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~------~l~~~l~sR~~  182 (365)
                      ..+++... ...++    .+.+++|+|.+++. +..+....|..+++.+++.+.+|++....+      ++..++.....
T Consensus        61 ~~~l~~~~-~s~sl----F~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~  135 (140)
T 1jql_B           61 WNAIFSLC-QAMSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSV  135 (140)
T ss_dssp             HHHHHHHH-HCCCT----TCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCE
T ss_pred             HHHHHHHH-hcCCC----CCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeE
Confidence            34555443 44443    56779999999854 566677889999998888888888875443      24455545444


Q ss_pred             eEE
Q 017844          183 NIR  185 (365)
Q Consensus       183 ~i~  185 (365)
                      .+.
T Consensus       136 ~v~  138 (140)
T 1jql_B          136 QVT  138 (140)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*

Probab=94.97  E-value=0.089  Score=49.43  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=16.5

Q ss_pred             eEEEECCCCCcHHHHH-HHHHH
Q 017844           36 HLLFYGPPGSGKKTLI-MALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla-~~la~   56 (365)
                      ++++.||+|+|||..+ ..+..
T Consensus        10 ~vlv~a~TGSGKT~~~l~~~l~   31 (440)
T 1yks_A           10 TTVLDFHPGAGKTRRFLPQILA   31 (440)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHH
T ss_pred             CEEEEcCCCCCHHHHHHHHHHH
Confidence            4999999999999974 43444

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.95  E-value=0.015  Score=49.02  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +.|.|++|+||||.++.++..+..
T Consensus         6 i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            6 IVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999998743

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=94.94  E-value=0.038  Score=55.98  Aligned_cols=40  Identities=23%  Similarity=0.462  Sum_probs=29.5

Q ss_pred             CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++.....+...+. +  +..++.||||||||+++..++..+..
T Consensus       358 n~~Q~~Av~~~l~-~--~~~lI~GppGTGKT~ti~~~i~~l~~  397 (800)
T 2wjy_A          358 NHSQVYAVKTVLQ-R--PLSLIQGPPGTGKTVTSATIVYHLAR  397 (800)
T ss_dssp             CHHHHHHHHHHHT-S--SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhcc-C--CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4555666666553 2  34899999999999998888877664

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.93  E-value=0.012  Score=47.41  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|.|++|+||||+++.+++.
T Consensus         7 i~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            7 VVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999763

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=94.91  E-value=0.015  Score=49.04  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=22.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +.|.|++|+||||.++.++..+..
T Consensus         8 i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            8 ILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcc
Confidence            899999999999999999998743

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.88  E-value=0.018  Score=46.24  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      ..+++.|++|+||||+++.+.+.
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            44999999999999999998753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.87  E-value=0.017  Score=45.93  Aligned_cols=21  Identities=19%  Similarity=0.596  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.84  E-value=0.017  Score=46.33  Aligned_cols=21  Identities=24%  Similarity=0.539  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus        10 i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A           10 VILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999998763

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.83  E-value=0.016  Score=55.69  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      ++++|.||+||||+++.+++.+...
T Consensus        38 IvlvGlpGSGKSTia~~La~~L~~~   62 (520)
T 2axn_A           38 IVMVGLPARGKTYISKKLTRYLNWI   62 (520)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhc
Confidence            8999999999999999999987443

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.82  E-value=0.018  Score=45.87  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+.+.
T Consensus         9 i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            9 VVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            899999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.81  E-value=0.0065  Score=52.95  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.|++|+||||+++.++..+
T Consensus        27 I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           27 ISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             EEEECSTTSSHHHHHTTTGGGC
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8999999999999999998865

>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}

Probab=94.81  E-value=0.021  Score=56.05  Aligned_cols=39  Identities=26%  Similarity=0.251  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844           20 DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        20 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +..+.+...+... ....+++|++|.|||+++-.++..+.
T Consensus       179 dQ~~al~~~~~~~-~~~~vlta~RGRGKSa~lG~~~a~~~  217 (671)
T 2zpa_A          179 EQQQLLKQLMTMP-PGVAAVTAARGRGKSALAGQLISRIA  217 (671)
T ss_dssp             HHHHHHHHHTTCC-SEEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhh-hCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            3344444444322 13489999999999999988888653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.79  E-value=0.048  Score=44.95  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=3.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||++..+.+.
T Consensus        23 i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           23 VAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEC-----------------
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.77  E-value=0.018  Score=46.31  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+++.|++|+||||+++.+.+.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3999999999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.71  E-value=0.019  Score=45.42  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+.+.
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999999763

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.71  E-value=0.016  Score=47.20  Aligned_cols=21  Identities=33%  Similarity=0.408  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++++|++|+|||++|..++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999998753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.71  E-value=0.017  Score=45.95  Aligned_cols=21  Identities=29%  Similarity=0.672  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+.+.
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHhC
Confidence            899999999999999998763

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=94.69  E-value=0.21  Score=45.53  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             eEEEECCCCCcHHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+.|.|++|+||||+++.+++.
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3889999999999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.66  E-value=0.017  Score=45.98  Aligned_cols=20  Identities=25%  Similarity=0.732  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+.+
T Consensus         6 i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            6 VAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            89999999999999999875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.65  E-value=0.021  Score=45.21  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.63  E-value=0.021  Score=45.33  Aligned_cols=21  Identities=24%  Similarity=0.635  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.+...
T Consensus         9 i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	1e-34
d1njfa_	239	c.37.1.20 (A:) delta prime subunit of DNA polymera	3e-34
d1iqpa2	231	c.37.1.20 (A:2-232) Replication factor C {Archaeon	2e-31
d1sxjd2	237	c.37.1.20 (D:26-262) Replication factor C2 {Baker'	1e-29
d1sxje1	99	a.80.1.1 (E:256-354) Replication factor C5 {Baker'	8e-25
d1sxjb2	224	c.37.1.20 (B:7-230) Replication factor C4 {Baker's	1e-24
d1sxjc2	227	c.37.1.20 (C:12-238) Replication factor C3 {Baker'	1e-22
d2gnoa2	198	c.37.1.20 (A:11-208) gamma subunit of DNA polymera	7e-19
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	9e-18
d1a5ta2	207	c.37.1.20 (A:1-207) delta prime subunit of DNA pol	1e-13
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	3e-13
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	9e-12
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	2e-08
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	2e-07
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	3e-05
d1qhla_	222	c.37.1.12 (A:) Cell division protein MukB {Escheri	5e-04
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	0.001

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  126 bits (315), Expect = 1e-34
 Identities = 98/254 (38%), Positives = 157/254 (61%), Gaps = 11/254 (4%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLV-TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGP 61
           WVDKYRPK+L+ +  ++++   LK L    +D PHLL YGP G+GKKT  MALL  +FGP
Sbjct: 1   WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 60

Query: 62  GAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNR 121
           G  ++K++ + +     + N  LEL  +SS  H+E++PSD G  DR V+QE++KE+A+  
Sbjct: 61  GVYRLKIDVRQFVT---ASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 117

Query: 122 PID-----TKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
            +D           +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +   
Sbjct: 118 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 177

Query: 177 IRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETC 235
           I+S+CL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+ 
Sbjct: 178 IKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 237

Query: 236 RVQ-QYPFKDNQAI 248
            +  +   K +  I
Sbjct: 238 ALNNELALKSSSPI 251

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (312), Expect = 3e-34
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 18/227 (7%)

Query: 5   DKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGA 63
            K+RP+T   V+  + +   L   ++     H  LF G  G GK ++   L + +     
Sbjct: 4   RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL----- 58

Query: 64  EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY-VVQEVIKEMAKNRP 122
                 N    I A    +      +     V+L   DA  + +    ++++  +     
Sbjct: 59  ------NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY--- 109

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
                +  FKV +++EV  LSR + ++L +T+E+     + +L      K+   I SRCL
Sbjct: 110 --APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 167

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 229
              + +   EQI   LE I  +E +         LA  +  SLR A+
Sbjct: 168 QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL 214

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  116 bits (291), Expect = 2e-31
 Identities = 91/260 (35%), Positives = 129/260 (49%), Gaps = 42/260 (16%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ LD ++  + I + LK  V     PHLLF GPPG GK T  +AL R++FG  
Sbjct: 14  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN 73

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                                         N +EL+ SD    +  V++E +KE A+ +P
Sbjct: 74  ---------------------------WRHNFLELNASDERGIN--VIREKVKEFARTKP 104

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
           I   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC 
Sbjct: 105 I---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 161

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242
             R     +E I K L +IA+ EGL+L       +   +   +RRAI   +         
Sbjct: 162 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKI 221

Query: 243 KDNQAIPAMDWEEFVFEIAS 262
            D          E VF +AS
Sbjct: 222 TD----------ENVFMVAS 231

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (279), Expect = 1e-29
 Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 21/253 (8%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRPK LD+V         LKK +   + PH+LFYGPPG+GK + I+AL ++++GP 
Sbjct: 2   WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 61

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
             K    ++  +++A            S    + +         R  V +  K   +N P
Sbjct: 62  LMK----SRILELNA------------SDERGISIVREKVKNFARLTVSKPSKHDLENYP 105

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
                   +K+++L+E D ++ +AQ +LRRTME YS   R  L CN  +++ + + S+C 
Sbjct: 106 -----CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 160

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPF 242
             R  +      +  L FI+++E ++   G   R+ + S   LRR I   ++        
Sbjct: 161 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYL 220

Query: 243 KDNQAIPAMDWEE 255
            D + I +   EE
Sbjct: 221 GDGKNITSTQVEE 233

>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.8 bits (236), Expect = 8e-25
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 252 DWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL--KRLDAEI 309
           DW   + ++   I++E+S   L + R  LY+LL +C+P  ++LK L + LL  + L+   
Sbjct: 3   DWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTN 62

Query: 310 KHEVCHWAAYY 320
           K  +  +++ +
Sbjct: 63  KSSIIEYSSVF 73

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.2 bits (243), Expect = 1e-24
 Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 31/233 (13%)

Query: 3   WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           WV+KYRP+ L  ++ +++    L+++  + + PH++  G PG GK T +  L  ++ G  
Sbjct: 5   WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR- 63

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                                       S     L  + +  +   VV+  IK  A+ + 
Sbjct: 64  ----------------------------SYADGVLELNASDDRGIDVVRNQIKHFAQKKL 95

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
               GK   K+++L+E D ++  AQ +LRRTME YS S R    CN S+K+ E ++S+C 
Sbjct: 96  HLPPGK--HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 153

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC 235
            +R +  ++E ++K L  I K E ++  +     +   +   +R+AI + ++ 
Sbjct: 154 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 206

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.2 bits (230), Expect = 1e-22
 Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 32/236 (13%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG 60
           + WV+KYRP+TLD+V    ++   ++K V E   PHLLFYGPPG+GK + I+AL R+++G
Sbjct: 2   LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 61

Query: 61  PGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKN 120
                + +E                                    D   +  V  ++   
Sbjct: 62  KNYSNMVLELNAS--------------------------------DDRGIDVVRNQIKDF 89

Query: 121 RPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180
                   +GFK+++L+E D ++  AQ++LRR +E+Y+ + R  +  N + K+T A+ S+
Sbjct: 90  ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 149

Query: 181 CLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
           C   R     +E I + +  +   E L+L       L E SN  +RR +   ++C+
Sbjct: 150 CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 205

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 81.6 bits (201), Expect = 7e-19
 Identities = 29/190 (15%), Positives = 70/190 (36%), Gaps = 32/190 (16%)

Query: 20  DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGS 79
           D  + LK+++ + +   +L  G   S  + + + L   V     +   V      ID   
Sbjct: 1   DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLE----IDPEG 56

Query: 80  RNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV 139
            NI ++                        ++  IK+     P         K +++++ 
Sbjct: 57  ENIGID-----------------------DIRT-IKDFLNYSPELYT----RKYVIVHDC 88

Query: 140 DKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLE 199
           ++++++A ++  + +E+      ++L       +   I+SR   + +N P E + +   +
Sbjct: 89  ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEK 148

Query: 200 FIAKKEGLQL 209
                E L L
Sbjct: 149 IGDLWEELPL 158

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.8 bits (195), Expect = 9e-18
 Identities = 43/256 (16%), Positives = 82/256 (32%), Gaps = 44/256 (17%)

Query: 1   MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQD-----------------CPHLLFYGPP 43
            LW  KY P  L QV  ++     LK  +   +                     + YGPP
Sbjct: 2   KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 61

Query: 44  GSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG 103
           G GK T    + +++     E+   + ++  +                            
Sbjct: 62  GIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVK---------------------N 100

Query: 104 FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRL 163
             D   V    K   + + ++ K      V++++EVD +S   +  + +  +    +   
Sbjct: 101 ALDNMSVVGYFKHNEEAQNLNGK----HFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTP 156

Query: 164 ILCCNSSSK--VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS 221
           ++   +             CL+I+   P    I   L  IA +E  +L      RL + +
Sbjct: 157 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 216

Query: 222 NRSLRRAILSFETCRV 237
              +R+ I    T   
Sbjct: 217 RGDIRQVINLLSTIST 232

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 67.1 bits (162), Expect = 1e-13
 Identities = 37/217 (17%), Positives = 64/217 (29%), Gaps = 18/217 (8%)

Query: 18  HQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKID 76
            +   + L          H LL    PG G   LI AL R                 +  
Sbjct: 7   LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY------------LLCQQPQ 54

Query: 77  AGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVL 136
                       L  A       + A  + +  +          +  +     G KV+ +
Sbjct: 55  GHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWV 114

Query: 137 NEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVK 196
            +   L+  A ++L +T+E+  A     L      ++   +RSRC    +  P E+  V 
Sbjct: 115 TDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVT 174

Query: 197 VLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE 233
            L        + +           S  S   A+  F+
Sbjct: 175 WL-----SREVTMSQDALLAALRLSAGSPGAALALFQ 206

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 66.5 bits (161), Expect = 3e-13
 Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 30/234 (12%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLV-----TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           RPKTLD+ I  + + Q L+  +      ++   HLL +GPPG GK TL   +  ++    
Sbjct: 4   RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN- 62

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
              ++V +       G     L                 A   +   +  + +    +R 
Sbjct: 63  ---LRVTSGPAIEKPGDLAAIL-----------------ANSLEEGDILFIDEIHRLSRQ 102

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL 182
            +       +  V++ V      A    R    +      +             +    +
Sbjct: 103 AEEHLYPAMEDFVMDIVIGQGPAA----RTIRLELPRFTLIGATTRPGLITAPLLSRFGI 158

Query: 183 NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCR 236
              +   T E++ + +   A+  G+++    A  +  +S  ++R A   F   R
Sbjct: 159 VEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVR 212

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 62.3 bits (150), Expect = 9e-12
 Identities = 36/237 (15%), Positives = 84/237 (35%), Gaps = 33/237 (13%)

Query: 8   RPKTLDQVIVHQDIAQNLKKLV-----TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG 62
           RPK+LD+ I  +++ + L   +       +   H+L  GPPG GK TL   +  ++    
Sbjct: 4   RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 63

Query: 63  AEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRP 122
                         A                            +R  V  + +    N+ 
Sbjct: 64  HVTSGPVLVKQGDMAAILT----------------------SLERGDVLFIDEIHRLNKA 101

Query: 123 IDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR-C 181
           ++       +   ++ +      A     +++        L+     S  ++  +RSR  
Sbjct: 102 VEELLYSAIEDFQIDIMIGKGPSA-----KSIRIDIQPFTLVGATTRSGLLSSPLRSRFG 156

Query: 182 LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ 238
           + + ++  T +++ ++++  A    +++    A  +A++S  + R AI   +  R  
Sbjct: 157 IILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDM 213

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 38/203 (18%)

Query: 35  PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANH 94
            + LF GP  SGK TL  ALL    G                       L +       +
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGKA---------------------LNVNLPLDRLN 193

Query: 95  VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE------AQH 148
            EL  +   F   +   E +K            +       +N +D L            
Sbjct: 194 FELGVAIDQFLVVF---EDVKGTGGES------RDLPSGQGINNLDNLRDYLDGSVKVNL 244

Query: 149 SLRRTMEKYSASCRLILCCNSS-SKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL 207
             +   ++       I+  N      T   R             +  ++  EF+ +K  +
Sbjct: 245 EKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII 304

Query: 208 QLP-SGFATRLAEKSNRSLRRAI 229
           Q   +     +  +      ++I
Sbjct: 305 QSGIALLLMLIWYRPVAEFAQSI 327

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 19/158 (12%), Positives = 49/158 (31%), Gaps = 10/158 (6%)

Query: 6   KYRPKTLDQVIVHQD-IAQNLKKLVTEQDCP-----HLLFYGPPGSGKKTLIMALLRQVF 59
            Y P  L       + +A+     +                G  G GK TL    +++V 
Sbjct: 12  NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 71

Query: 60  GPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAK 119
              A++     + +     + N+   L+ +       +     G     +++ ++  +  
Sbjct: 72  EAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVR--GAPALDILKALVDNLYV 129

Query: 120 NRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157
                       +   +    +++ E  ++L R  E+ 
Sbjct: 130 ENHYLLVIL--DEFQSMLSSPRIAAEDLYTLLRVHEEI 165

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 32/246 (13%), Positives = 54/246 (21%), Gaps = 27/246 (10%)

Query: 6   KYRPKTLDQVIVHQD-----IAQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQV 58
            Y PK L     H++     +   L   +       P     G PG+GK   +  L    
Sbjct: 12  SYVPKRL----PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 67

Query: 59  FGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMA 118
                   +       I      I  E+    +        S   F    V     +++ 
Sbjct: 68  KDK--TTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLY 125

Query: 119 KNRPIDTKGKRGFKVLVLNE--------------VDKLSREAQHSLRRTMEKYSASCRLI 164
               +D        +L                     +       L              
Sbjct: 126 MFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKY 185

Query: 165 LCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRS 224
           +   S     +         +           +L+ IA   G Q P       A  +   
Sbjct: 186 VIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 245

Query: 225 LRRAIL 230
           L R+  
Sbjct: 246 LYRSAY 251

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 21/195 (10%), Positives = 59/195 (30%), Gaps = 5/195 (2%)

Query: 38  LFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVEL 97
              G  G+GK T + A +  +                  +GSR+  L     +   +  L
Sbjct: 28  TLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSML 87

Query: 98  SPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY 157
              ++  Q   V   + +   ++R +D K      + +  +  +L  E  +  +  +   
Sbjct: 88  DTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPL 147

Query: 158 SASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRL 217
           +     +      +      +        +S   +  +      +  +  +        L
Sbjct: 148 NELKDKLE-----AMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASL 202

Query: 218 AEKSNRSLRRAILSF 232
               + ++ R++  +
Sbjct: 203 YGGISSAITRSLRDY 217

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 26/219 (11%)

Query: 37  LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVE 96
           +L  GPP SGK  L   +  +   P  +                         S    + 
Sbjct: 43  VLLEGPPHSGKTALAAKIAEESNFPFIKIC-----------------------SPDKMIG 79

Query: 97  LSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEK 156
            S +      + +  +  K       +D   +    V +      L  +A   L +    
Sbjct: 80  FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP 139

Query: 157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSP---TEEQIVKVLEFIAKKEGLQLPSGF 213
                 +I   +    + E       +  I+ P   T EQ+++ LE +   +  +  +  
Sbjct: 140 QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIA 199

Query: 214 ATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMD 252
                +K    +++ ++  E        ++  + +  + 
Sbjct: 200 QQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLR 238

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	100.0
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	100.0
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	100.0
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	100.0
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	100.0
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	100.0
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.97
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.97
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.95
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.95
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.91
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.82
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.8
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.78
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.78
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.76
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.73
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.71
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.71
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.61
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.59
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.58
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.56
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.54
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.51
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.49
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.47
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.42
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.17
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.17
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.16
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.15
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.14
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.13
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.12
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.11
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.1
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.09
d1sxje1	99	Replication factor C5 {Baker's yeast (Saccharomyce	99.08
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.06
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.06
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.05
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.03
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.98
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.98
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.89
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.87
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.86
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.84
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.81
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.76
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.75
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.75
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.51
d1tuea_	205	Replication protein E1 helicase domain {Human papi	98.29
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.28
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.26
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	98.05
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.05
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	98.03
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.9
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.86
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.85
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.76
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.75
d1jr3a1	126	gamma subunit {Escherichia coli [TaxId: 562]}	97.74
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.69
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.69
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.68
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.68
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.67
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.67
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.67
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.66
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.64
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.63
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.63
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.54
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.51
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.5
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.48
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	97.44
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.42
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.42
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.37
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.37
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.36
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.34
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.33
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.31
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.31
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.3
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.28
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.27
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.27
d1okkd2	207	GTPase domain of the signal recognition particle r	97.23
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.21
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.21
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.21
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	97.19
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.17
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.17
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.15
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.13
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.13
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	97.12
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.07
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.06
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.05
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.01
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.0
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.88
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	96.82
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.79
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.78
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.78
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.77
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	96.76
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.73
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.71
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	96.71
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.7
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.69
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	96.67
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.6
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.58
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.55
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	96.55
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	96.55
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.45
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.45
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	96.44
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	96.44
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.43
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.38
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	96.31
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.29
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.22
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.21
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.19
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.16
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.16
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	96.13
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.09
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.06
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.06
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.04
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.03
d1jqlb_	140	delta subunit of DNA polymerase III, N-domain {Esc	95.99
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.92
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.91
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.84
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.83
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.83
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.77
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.74
d1sxjd1	91	Replication factor C2 {Baker's yeast (Saccharomyce	95.73
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.73
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.71
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.7
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.69
d1iqpa1	95	Replication factor C {Archaeon Pyrococcus furiosus	95.67
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.67
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.65
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.64
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.64
d1jr3d1	127	delta subunit {Escherichia coli [TaxId: 562]}	95.6
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.59
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.5
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.5
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.47
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.4
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.3
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.27
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.27
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.25
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.25
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.19
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.19
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.18
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	95.16
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.15
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.11
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.09
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.07
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.98
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.93
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.93
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.91
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.9
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.9
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.89
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.88
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.87
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.82
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.82
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.77
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.75
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.72
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.72
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.69
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.69
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.64
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.64
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.63
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.6
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	94.59
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.57
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.57
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.5
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.47
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.46
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.46
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.45
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.39
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.37
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.33
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	94.31
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.25
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.22
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.17
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.17
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.14
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.13
d1sxjc1	95	Replication factor C3 {Baker's yeast (Saccharomyce	94.11
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	94.07
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.05
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.03
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.91
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.89
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.86
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.81
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.68
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	93.61
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.59
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.49
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	93.41
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	93.39
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.25
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.18
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.16
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.09
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.01
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	92.96
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.93
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	92.92
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.88
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.71
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.54
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.49
d1sxjb1	92	Replication factor C4 {Baker's yeast (Saccharomyce	92.45
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.15
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.81
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.65
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.46
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.26
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	91.23
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.07
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.03
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	90.99
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	90.13
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	89.96
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.52
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	89.36
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	89.27
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	88.56
d2qw6a1	88	Uncharacterized protein EfaeDRAFT_0938 {Enterococc	87.37
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	87.3
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.85
d3bgea1	184	Uncharacterized protein NTHI1458 {Haemophilus infl	86.84
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	86.79
d3ctda1	163	Uncharacterized protein YrvN {Prochlorococcus mari	86.6
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.17
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.38
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.29
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.61
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	84.19
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.29
d2r9ga1	186	Uncharacterized protein EfaeDRAFT_0938 {Enterococc	83.23
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	83.2
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	82.28
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	81.63
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	81.17
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	80.96
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	80.44

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-39  Score=279.15  Aligned_cols=210  Identities=29%  Similarity=0.485  Sum_probs=177.3

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      +||+|||||++|++++||+++++.|+.|++.+..+|++|+||||+||||+|+.+++++.+....                
T Consensus         3 ~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~----------------   66 (224)
T d1sxjb2           3 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYA----------------   66 (224)
T ss_dssp             CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHH----------------
T ss_pred             CchHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhccccc----------------
Confidence            6899999999999999999999999999999999999999999999999999999988543211                


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                                 ...+++.+.+...  ...+...+..+......  ....+++++|+||+|.++..+++.|+..+++++.+
T Consensus        67 -----------~~~~~~n~~~~~~--~~~i~~~~~~~~~~~~~--~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~  131 (224)
T d1sxjb2          67 -----------DGVLELNASDDRG--IDVVRNQIKHFAQKKLH--LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNS  131 (224)
T ss_dssp             -----------HHEEEECTTSCCS--HHHHHTHHHHHHHBCCC--CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT
T ss_pred             -----------cccccccccccCC--ceehhhHHHHHHHhhcc--CCCcceEEEEEecccccchhHHHHHhhhccccccc
Confidence                       0113333333222  12344444444443322  23456789999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      +.+++++++..++.++++|||..++|++|+.+++.++|.+++.+||+.+++++++.|++.++||+|.|++.||.++....
T Consensus       132 ~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~~~~  211 (224)
T d1sxjb2         132 TRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG  211 (224)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             eeeeeccCchhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876554


Q ss_pred             C
Q 017844          241 P  241 (365)
Q Consensus       241 ~  241 (365)
                      .
T Consensus       212 ~  212 (224)
T d1sxjb2         212 L  212 (224)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-38  Score=271.56  Aligned_cols=208  Identities=36%  Similarity=0.637  Sum_probs=172.9

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      .||+|||||++|++++||+++++.|+.|+..+..||++|+||+|+||||+++++++++.+......              
T Consensus         2 ~pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~--------------   67 (227)
T d1sxjc2           2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM--------------   67 (227)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH--------------
T ss_pred             CchhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcce--------------
Confidence            389999999999999999999999999999999999999999999999999999998865432110              


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCc
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSAS  160 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~  160 (365)
                                   +.+....+....  ................   ...+++++||||++.+....++.|++.|++++.+
T Consensus        68 -------------~~e~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~  129 (227)
T d1sxjc2          68 -------------VLELNASDDRGI--DVVRNQIKDFASTRQI---FSKGFKLIILDEADAMTNAAQNALRRVIERYTKN  129 (227)
T ss_dssp             -------------EEEECTTSCCSH--HHHHTHHHHHHHBCCS---SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT
T ss_pred             -------------eEEecccccCCe--eeeecchhhccccccc---cCCCeEEEEEeccccchhhHHHHHHHHhhhcccc
Confidence                         112222221111  1222233333333332   3456789999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 017844          161 CRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       161 ~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~  240 (365)
                      +.++++++...+++++++|||..+.|++|+.+++.++|.+++.++|+.+++++++.|++.++||+|.|++.||.+.....
T Consensus       130 ~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~~~  209 (227)
T d1sxjc2         130 TRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLD  209 (227)
T ss_dssp             EEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTC
T ss_pred             eeeccccCcHHHhHHHHHHHHhhhccccccccccccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998765443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-37  Score=272.91  Aligned_cols=235  Identities=40%  Similarity=0.720  Sum_probs=177.3

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcCCC-CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDC-PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      |+|||||++|++++|++++.+.|+.++..+.. ++++|+||||+||||+++++++++.++.......+...+ ...+...
T Consensus         1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~-~~~~~~~   79 (252)
T d1sxje2           1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF-VTASNRK   79 (252)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred             CCcccCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccc-cccccch
Confidence            99999999999999999999999999987655 459999999999999999999998776654444444333 2222222


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCC-----CCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDT-----KGKRGFKVLVLNEVDKLSREAQHSLRRTMEK  156 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~  156 (365)
                      ..+  .......+......+.+........+.++..........     ...+..++++|||+|.++.+.++.|++.+++
T Consensus        80 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~  157 (252)
T d1sxje2          80 LEL--NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK  157 (252)
T ss_dssp             -----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred             hhh--hhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhccccc
Confidence            222  333344455555555555554455555555544333211     1234568999999999999999999999999


Q ss_pred             hcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Q 017844          157 YSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLP-SGFATRLAEKSNRSLRRAILSFETC  235 (365)
Q Consensus       157 ~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~-~~~~~~i~~~~~g~lr~ai~~l~~~  235 (365)
                      ++.+++||++|++.++++++++|||..++|++|+.+++.+++..++.++++.++ +++++.|+..++||+|+|++.||.+
T Consensus       158 ~~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~  237 (252)
T d1sxje2         158 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM  237 (252)
T ss_dssp             STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred             ccccccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998764 7889999999999999999999998


Q ss_pred             HhcCC
Q 017844          236 RVQQY  240 (365)
Q Consensus       236 ~~~~~  240 (365)
                      +..+.
T Consensus       238 ~~~~~  242 (252)
T d1sxje2         238 ALNNE  242 (252)
T ss_dssp             HHTTT
T ss_pred             HHcCC
Confidence            87755

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-37  Score=271.04  Aligned_cols=219  Identities=21%  Similarity=0.304  Sum_probs=175.5

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .++||||++|++++||+++++.|+.+++.++.|| ++|+||+|+|||++|+++++.+.+.....         ..+++.+
T Consensus         2 ~~~KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~---------~~~~~~~   72 (239)
T d1njfa_           2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVC   72 (239)
T ss_dssp             HHHHTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSC---------SSCCSCS
T ss_pred             chhhhCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccc---------cCccccc
Confidence            5789999999999999999999999999999998 99999999999999999999987754321         1111211


Q ss_pred             eeccccccccc---cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           82 IDLELTTLSSA---NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        82 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                      ..+  .....+   ..+++...+..  ....++++++.+.. .    +..++++|+||||+|.|+.++++.|++.||+++
T Consensus        73 ~~~--~~i~~~~~~~~~~~~~~~~~--~i~~ir~~~~~~~~-~----~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~  143 (239)
T d1njfa_          73 DNC--REIEQGRFVDLIEIDAASRT--KVEDTRDLLDNVQY-A----PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP  143 (239)
T ss_dssp             HHH--HHHHHTCCTTEEEEETTCSS--SHHHHHHHHHSCCC-S----CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC
T ss_pred             hHH--HHHHcCCCCeEEEecchhcC--CHHHHHHHHHHHHh-c----cccCCCEEEEEECcccCCHHHHHHHHHHHhcCC
Confidence            111  111222   22334333221  11234444333221 1    235577899999999999999999999999999


Q ss_pred             CceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~  238 (365)
                      .++.||++|++..++.++++|||..+.|++++.+++.+++.+++..+++.+++++++.|++.++||+|+|+++|+.+...
T Consensus       144 ~~~~~il~tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~  223 (239)
T d1njfa_         144 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS  223 (239)
T ss_dssp             TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCccccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999986654


Q ss_pred             C
Q 017844          239 Q  239 (365)
Q Consensus       239 ~  239 (365)
                      +
T Consensus       224 ~  224 (239)
T d1njfa_         224 G  224 (239)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.4e-36  Score=263.72  Aligned_cols=208  Identities=41%  Similarity=0.682  Sum_probs=172.7

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      +|++||+|++|++++||+++++.|+.|++.++.+|++|+||||+||||+|+++|+++.+.....                
T Consensus        13 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~----------------   76 (231)
T d1iqpa2          13 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRH----------------   76 (231)
T ss_dssp             CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHH----------------
T ss_pred             hHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCC----------------
Confidence            7999999999999999999999999999999999999999999999999999999885432110                


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCce
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASC  161 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~  161 (365)
                                 .++++++++...  ...+++...........   ...+..|+++||++.+....++.|++.++++..++
T Consensus        77 -----------~~~e~n~s~~~~--~~~~~~~~~~~~~~~~~---~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~  140 (231)
T d1iqpa2          77 -----------NFLELNASDERG--INVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNV  140 (231)
T ss_dssp             -----------HEEEEETTCHHH--HHTTHHHHHHHHHSCCG---GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTE
T ss_pred             -----------CeeEEecCcccc--hhHHHHHHHHHHhhhhc---cCCCceEEeehhhhhcchhHHHHHhhhcccCCcce
Confidence                       012233322111  01122333333332222   24466899999999999999999999999999999


Q ss_pred             eEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 017844          162 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYP  241 (365)
Q Consensus       162 ~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~~~~~~  241 (365)
                      .+|+++++..+++++++|||..+.|++++.+++..++++++.++++.+++++++.|++.++||+|.|++.||.++.....
T Consensus       141 ~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~~~~  220 (231)
T d1iqpa2         141 RFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKK  220 (231)
T ss_dssp             EEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSE
T ss_pred             EEEeccCChhhchHhHhCccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988765443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-36  Score=264.16  Aligned_cols=211  Identities=33%  Similarity=0.607  Sum_probs=167.7

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      ||++||||++|++++||+++++.|+.+++.++.+|++|+||||+||||+++++++++.+......               
T Consensus         1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~---------------   65 (237)
T d1sxjd2           1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS---------------   65 (237)
T ss_dssp             CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT---------------
T ss_pred             CcchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCccccc---------------
Confidence            79999999999999999999999999999999999999999999999999999998743221000               


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCC-------CCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPI-------DTKGKRGFKVLVLNEVDKLSREAQHSLRRTM  154 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~l  154 (365)
                                 ...+.........  ......++........       ......+++|+||||++.+....++.+++.+
T Consensus        66 -----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~  132 (237)
T d1sxjd2          66 -----------RILELNASDERGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTM  132 (237)
T ss_dssp             -----------SEEEECSSSCCCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHH
T ss_pred             -----------chhheeccccccc--hHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhcc
Confidence                       0011111111100  0011111111111100       0012346689999999999999999999999


Q ss_pred             hhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 017844          155 EKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFET  234 (365)
Q Consensus       155 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~  234 (365)
                      ++++.+..+|+++++..+++++++|||..++|++++.+++.++|++++.++++.+++++++.|++.++||+|+|++.||.
T Consensus       133 ~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~  212 (237)
T d1sxjd2         133 ETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQS  212 (237)
T ss_dssp             HHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhcCC
Q 017844          235 CRVQQY  240 (365)
Q Consensus       235 ~~~~~~  240 (365)
                      ++..+.
T Consensus       213 ~~~~~~  218 (237)
T d1sxjd2         213 ASKGAQ  218 (237)
T ss_dssp             THHHHH
T ss_pred             HHHhch
Confidence            766543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.3e-31  Score=224.28  Aligned_cols=198  Identities=20%  Similarity=0.225  Sum_probs=155.4

Q ss_pred             cCHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecc-ccccccccc
Q 017844           17 VHQDIAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE-LTTLSSANH   94 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   94 (365)
                      +++++.+.|...+..++.|| ++|+||+|+||||+|+.+|+.++|.....         ..+|+.+.++. .........
T Consensus         6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~   76 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---------HKSCGHCRGCQLMQAGTHPDY   76 (207)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---------TBCCSCSHHHHHHHHTCCTTE
T ss_pred             ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccc---------cccccccchhhhhhhcccccc
Confidence            57889999999999999999 99999999999999999999998765432         22333333330 011222333


Q ss_pred             eecCCCCcC-ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844           95 VELSPSDAG-FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus        95 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l  173 (365)
                      ..+..++.+ ......++++++.+... +    ..++++|+||||+|.|+.+++++|+++||+++.++.||++|++..++
T Consensus        77 ~~~~~~~~~~~i~~~~ir~l~~~~~~~-~----~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l  151 (207)
T d1a5ta2          77 YTLAPEKGKNTLGVDAVREVTEKLNEH-A----RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERL  151 (207)
T ss_dssp             EEECCCTTCSSBCHHHHHHHHHHTTSC-C----TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred             chhhhhhcccccccchhhHHhhhhhhc-c----ccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence            344433322 22333455555543222 2    35678999999999999999999999999999999999999999999


Q ss_pred             cHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 017844          174 TEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFE  233 (365)
Q Consensus       174 ~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~  233 (365)
                      +++|+|||+.+.|++++.+++..+|++     ++.++++++..+++.++||+|+|+++||
T Consensus       152 l~tI~SRc~~i~~~~~~~~~~~~~L~~-----~~~~~~~~~~~i~~~s~Gs~r~al~~le  206 (207)
T d1a5ta2         152 LATLRSRCRLHYLAPPPEQYAVTWLSR-----EVTMSQDALLAALRLSAGSPGAALALFQ  206 (207)
T ss_dssp             CHHHHTTSEEEECCCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred             hhhhcceeEEEecCCCCHHHHHHHHHH-----cCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence            999999999999999999999999964     4568899999999999999999999875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1e-30  Score=229.53  Aligned_cols=216  Identities=22%  Similarity=0.322  Sum_probs=150.5

Q ss_pred             CcccccCCCCCCccccCHHHHHHHHHHHHc-----------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLKKLVTE-----------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE   64 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~~~l~~-----------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~   64 (365)
                      +|++||||++|++++|+++.++.|+.++..                 +..++++|+||||+||||+|+++|+++.+..  
T Consensus         3 lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~--   80 (253)
T d1sxja2           3 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI--   80 (253)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE--
T ss_pred             ccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhh--
Confidence            799999999999999999999999998853                 3345699999999999999999999864321  


Q ss_pred             cceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH
Q 017844           65 KVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR  144 (365)
Q Consensus        65 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~  144 (365)
                       ..++....     ......  .. .....+..... .....         .....    .....+..++++||++.+..
T Consensus        81 -~~~~~~~~-----~~~~~~--~~-~~~~~~~~~~~-~~~~~---------~~~~~----~~~~~~~~vi~ide~~~~~~  137 (253)
T d1sxja2          81 -LEQNASDV-----RSKTLL--NA-GVKNALDNMSV-VGYFK---------HNEEA----QNLNGKHFVIIMDEVDGMSG  137 (253)
T ss_dssp             -EEECTTSC-----CCHHHH--HH-TGGGGTTBCCS-TTTTT---------C--------CCSSTTSEEEEECSGGGCCT
T ss_pred             -hccccccc-----hhhHHH--HH-HHHHHhhcchh-hhhhh---------hhhhc----ccccccceEEEeeecccccc
Confidence             11111000     000000  00 00000000000 00000         00000    11244668999999999987


Q ss_pred             HHHHHHHHHHhhh-cCceeEEEEecCCC-cccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Q 017844          145 EAQHSLRRTMEKY-SASCRLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN  222 (365)
Q Consensus       145 ~~~~~Ll~~le~~-~~~~~~Il~t~~~~-~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~  222 (365)
                      ..+..+...++.. .....+++++++.. ...+++++||..++|++|+.+++..+++.++.++|+.+++++++.|++.++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~  217 (253)
T d1sxja2         138 GDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTR  217 (253)
T ss_dssp             TSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTT
T ss_pred             chhhhhHHHhhhhcccccccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence            7766666666542 23445666666543 566789999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCC
Q 017844          223 RSLRRAILSFETCRVQQYPF  242 (365)
Q Consensus       223 g~lr~ai~~l~~~~~~~~~~  242 (365)
                      ||+|+|++.|+.++.....+
T Consensus       218 GDiR~ai~~L~~~~~~~~~i  237 (253)
T d1sxja2         218 GDIRQVINLLSTISTTTKTI  237 (253)
T ss_dssp             TCHHHHHHHHTHHHHHSSCC
T ss_pred             CcHHHHHHHHHHHHHcCCCC
Confidence            99999999999987765543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=8.8e-27  Score=202.40  Aligned_cols=186  Identities=20%  Similarity=0.282  Sum_probs=148.6

Q ss_pred             ccCCCCCCccccCHHHHHHHHHHHHc-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            6 KYRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         6 k~rP~~~~~iig~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      -.||++|++++||+++++.|+.|+..     ...+|++|+|||||||||+|+++|+++.++..                 
T Consensus         2 ~~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~-----------------   64 (238)
T d1in4a2           2 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH-----------------   64 (238)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE-----------------
T ss_pred             CCCCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCcc-----------------
Confidence            36999999999999999999998852     34567999999999999999999998743210                 


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh---
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY---  157 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~---  157 (365)
                                     .++..+.  .....+...+   ..        ..+..++++||++.+++..++.++..++..   
T Consensus        65 ---------------~~~~~~~--~~~~~~~~~~---~~--------~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~  116 (238)
T d1in4a2          65 ---------------VTSGPVL--VKQGDMAAIL---TS--------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQID  116 (238)
T ss_dssp             ---------------EEETTTC--CSHHHHHHHH---HH--------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCC
T ss_pred             ---------------cccCccc--ccHHHHHHHH---Hh--------hccCCchHHHHHHHhhhHHHhhcccceeeeeee
Confidence                           1111111  1111122222   21        123478999999999999999998888753   


Q ss_pred             ---------------cCceeEEEEecCCCcccHHHhccce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 017844          158 ---------------SASCRLILCCNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS  221 (365)
Q Consensus       158 ---------------~~~~~~Il~t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~  221 (365)
                                     ..++.+|++|++....++++++||. .+.|++++.+++..+++.++..++..++++++..+++.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s  196 (238)
T d1in4a2         117 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRS  196 (238)
T ss_dssp             C---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTS
T ss_pred             eeecCcccccccccCCCCeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhC
Confidence                           2356899999999999999999986 679999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 017844          222 NRSLRRAILSFETCR  236 (365)
Q Consensus       222 ~g~lr~ai~~l~~~~  236 (365)
                      +||+|.|+++|+.+.
T Consensus       197 ~gd~R~ai~~l~~~~  211 (238)
T d1in4a2         197 RGTPRIAIRLTKRVR  211 (238)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999999764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.9e-26  Score=200.43  Aligned_cols=189  Identities=23%  Similarity=0.285  Sum_probs=146.6

Q ss_pred             cCCCCCCccccCHHHHHHHHHHHHc-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc
Q 017844            7 YRPKTLDQVIVHQDIAQNLKKLVTE-----QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN   81 (365)
Q Consensus         7 ~rP~~~~~iig~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~   81 (365)
                      .||++|++++||+++++.|+.++..     ...+|++|+||||+||||+|+++|+++..+.                   
T Consensus         3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~-------------------   63 (239)
T d1ixsb2           3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL-------------------   63 (239)
T ss_dssp             CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCE-------------------
T ss_pred             cCCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCe-------------------
Confidence            4999999999999999999988863     2456799999999999999999999874321                   


Q ss_pred             eeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh----
Q 017844           82 IDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY----  157 (365)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~----  157 (365)
                                   ...+.+....     .......+..  .     .....++++||+|.+....+..++..+++.    
T Consensus        64 -------------~~~~~~~~~~-----~~~~~~~~~~--~-----~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~  118 (239)
T d1ixsb2          64 -------------RVTSGPAIEK-----PGDLAAILAN--S-----LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI  118 (239)
T ss_dssp             -------------EEEETTTCCS-----HHHHHHHHHT--T-----CCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEE
T ss_pred             -------------EeccCCcccc-----chhhHHHHHh--h-----ccCCCeeeeecccccchhHHHhhhhhhhhhhhhh
Confidence                         0111111111     0011111111  1     223479999999999999999999999753    


Q ss_pred             --------------cCceeEEEEecCCCc-ccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Q 017844          158 --------------SASCRLILCCNSSSK-VTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSN  222 (365)
Q Consensus       158 --------------~~~~~~Il~t~~~~~-l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~  222 (365)
                                    ..+..+|++|++... ..+.++++|..+.|.+++.+++..++..++..+++.++++.++.+++.++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~  198 (239)
T d1ixsb2         119 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSR  198 (239)
T ss_dssp             ECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTT
T ss_pred             hhccchhhhhcccCCCCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcC
Confidence                          224568888887775 45677778899999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcC
Q 017844          223 RSLRRAILSFETCRVQQ  239 (365)
Q Consensus       223 g~lr~ai~~l~~~~~~~  239 (365)
                      ||+|.|++.|+.+...+
T Consensus       199 gd~R~a~~~l~~~~~~a  215 (239)
T d1ixsb2         199 GTMRVAKRLFRRVRDFA  215 (239)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999876544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=6.8e-24  Score=177.63  Aligned_cols=181  Identities=14%  Similarity=0.191  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCC
Q 017844           21 IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPS  100 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (365)
                      .++.++.+++.+..++++|+||+|+|||++|..+++.+.....                          .+++++.+.++
T Consensus         2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~--------------------------~h~D~~~i~~~   55 (198)
T d2gnoa2           2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP--------------------------KASDVLEIDPE   55 (198)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC--------------------------CTTTEEEECCS
T ss_pred             HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccc--------------------------CCCCEEEEeCC
Confidence            4678889999998888999999999999999999997643221                          12233444443


Q ss_pred             CcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcc
Q 017844          101 DAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (365)
Q Consensus       101 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR  180 (365)
                      .. ...-..+|++.+.+. ..+.    .++++|+||||+|.|+.+++++|+++||||+.++.||++|+++.++++||+||
T Consensus        56 ~~-~I~Id~IR~i~~~~~-~~~~----~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SR  129 (198)
T d2gnoa2          56 GE-NIGIDDIRTIKDFLN-YSPE----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR  129 (198)
T ss_dssp             SS-CBCHHHHHHHHHHHT-SCCS----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred             cC-CCCHHHHHHHHHHHh-hCcc----cCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcc
Confidence            22 123335777665544 3332    57789999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEecCCCHHHHHHHHHHHH----HH-----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 017844          181 CLNIRINSPTEEQIVKVLEFIA----KK-----EGLQLPSGFATRLAEKSNRSLRRAILSFETCR  236 (365)
Q Consensus       181 ~~~i~~~~~~~~~~~~iL~~~~----~~-----~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~~  236 (365)
                      |+.+.|++|..  ...++....    +.     .+.....++...+++...| ++++++.++...
T Consensus       130 C~~i~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ld~~~  191 (198)
T d2gnoa2         130 VFRVVVNVPKE--FRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSG-LMESLKVLETEK  191 (198)
T ss_dssp             SEEEECCCCHH--HHHHHHHHHTTHHHHCGGGGTCHHHHHHHHHHHHHHHHH-HHHHHHHSCHHH
T ss_pred             eEEEeCCCchH--HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHhhC-HHHHHHHHHHHH
Confidence            99999987753  233332221    11     1222234455555555544 677776665543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.8e-19  Score=156.28  Aligned_cols=190  Identities=18%  Similarity=0.241  Sum_probs=128.4

Q ss_pred             CCCCCCccccCHHHHHHHHHHHH-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceecccccee
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVT-----------EQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKI   75 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~-----------~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~   75 (365)
                      ..-+|+|++|.+.+++.+.+.+.           +.+.+. +||+||||||||++|+++|+++..+   .+.+++..+  
T Consensus         7 ~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~---~~~i~~~~l--   81 (256)
T d1lv7a_           7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDF--   81 (256)
T ss_dssp             SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCSS--
T ss_pred             CCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCC---EEEEEhHHh--
Confidence            34689999999999988877653           122333 9999999999999999999987322   112222111  


Q ss_pred             cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-----------
Q 017844           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-----------  144 (365)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-----------  144 (365)
                                         ..    .........+++.++....         ..+.|++|||+|.+..           
T Consensus        82 -------------------~~----~~~g~~~~~l~~~f~~A~~---------~~P~il~iDeiD~l~~~r~~~~~~~~~  129 (256)
T d1lv7a_          82 -------------------VE----MFVGVGASRVRDMFEQAKK---------AAPCIIFIDEIDAVGRQRGAGLGGGHD  129 (256)
T ss_dssp             -------------------TT----SCCCCCHHHHHHHHHHHHT---------TCSEEEEETTHHHHTCCCSTTSCCTTC
T ss_pred             -------------------hh----cchhHHHHHHHHHHHHHHH---------cCCEEEEEEChhhhCccCCCCCCCCcH
Confidence                               10    0111122235566655433         3447999999986521           


Q ss_pred             ---HHHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 017844          145 ---EAQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATR  216 (365)
Q Consensus       145 ---~~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~  216 (365)
                         ...+.|+..++..  ..++.+|.+||+++.+++++++  |+ ..+.|++|+.+++.++++....+.++. ++..+..
T Consensus       130 ~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~  208 (256)
T d1lv7a_         130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAI  208 (256)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHH
Confidence               2345677777754  3356788899999999999985  77 589999999999999999888766554 3455788


Q ss_pred             HHHHcCC-CHHHHHHHHHHH
Q 017844          217 LAEKSNR-SLRRAILSFETC  235 (365)
Q Consensus       217 i~~~~~g-~lr~ai~~l~~~  235 (365)
                      +++.+.| +.++..++++.+
T Consensus       209 la~~t~G~s~adi~~l~~~A  228 (256)
T d1lv7a_         209 IARGTPGFSGADLANLVNEA  228 (256)
T ss_dssp             HHHTCTTCCHHHHHHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHHHH
Confidence            8887776 445555555543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1.2e-19  Score=156.78  Aligned_cols=176  Identities=20%  Similarity=0.290  Sum_probs=118.8

Q ss_pred             CCCCccccCHHHHHHHHHHHH----------cC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844           10 KTLDQVIVHQDIAQNLKKLVT----------EQ-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~----------~~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      .+|++++|.+++++.|++.+.          .| ..+. +||+||||||||++|+++|+++..+   .+.+++..+    
T Consensus         6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~---~~~i~~~~l----   78 (247)
T d1ixza_           6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASGSDF----   78 (247)
T ss_dssp             CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHHHH----
T ss_pred             CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCC---EEEEEhHHh----
Confidence            499999999999988877552          12 2333 9999999999999999999976332   122222111    


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH-------------
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR-------------  144 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~-------------  144 (365)
                                       ..    .........+++.++...         ...+.|++|||+|.+..             
T Consensus        79 -----------------~~----~~~g~~~~~l~~~f~~a~---------~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~  128 (247)
T d1ixza_          79 -----------------VE----MFVGVGAARVRDLFETAK---------RHAPCIVFIDEIDAVGRKRGSGVGGGNDER  128 (247)
T ss_dssp             -----------------HH----SCTTHHHHHHHHHHHHHT---------TSSSEEEEEETHHHHHC---------CHHH
T ss_pred             -----------------hh----ccccHHHHHHHHHHHHHH---------HcCCEEEEEEChhhhCccCCCCCCCCcHHH
Confidence                             00    000111122444444332         23457999999986521             


Q ss_pred             -HHHHHHHHHHhhhc--CceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 017844          145 -EAQHSLRRTMEKYS--ASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA  218 (365)
Q Consensus       145 -~~~~~Ll~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~  218 (365)
                       ...+.|+..|+...  .++.+|.+||+++.+++++++  |+. .++|++|+.+++.++++..+.+.... ++..++.++
T Consensus       129 ~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la  207 (247)
T d1ixza_         129 EQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLA  207 (247)
T ss_dssp             HHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHHH
Confidence             13456777777543  345677789999999999984  784 89999999999999999888765543 334578888


Q ss_pred             HHcCC
Q 017844          219 EKSNR  223 (365)
Q Consensus       219 ~~~~g  223 (365)
                      +.+.|
T Consensus       208 ~~t~g  212 (247)
T d1ixza_         208 KRTPG  212 (247)
T ss_dssp             HTCTT
T ss_pred             HHCCC
Confidence            88876

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.78  E-value=3.1e-18  Score=144.62  Aligned_cols=190  Identities=17%  Similarity=0.236  Sum_probs=133.9

Q ss_pred             CCCccc-c--CHHHHHHHHHHHHcCCC--CeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecc
Q 017844           11 TLDQVI-V--HQDIAQNLKKLVTEQDC--PHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLE   85 (365)
Q Consensus        11 ~~~~ii-g--~~~~~~~l~~~l~~~~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~   85 (365)
                      ||++++ |  ++.+...++.+++....  .+++|+||+|+|||+|++++++++.......++++...+            
T Consensus         8 tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~------------   75 (213)
T d1l8qa2           8 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF------------   75 (213)
T ss_dssp             CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH------------
T ss_pred             ChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHH------------
Confidence            899976 4  67778888888865322  339999999999999999999987654433333322111            


Q ss_pred             ccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhh-cCcee
Q 017844           86 LTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--REAQHSLRRTMEKY-SASCR  162 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--~~~~~~Ll~~le~~-~~~~~  162 (365)
                               ........   ......++...+.           ..++++|||+|.+.  +..+..|..+++.. ..+..
T Consensus        76 ---------~~~~~~~~---~~~~~~~~~~~~~-----------~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~  132 (213)
T d1l8qa2          76 ---------AQAMVEHL---KKGTINEFRNMYK-----------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQ  132 (213)
T ss_dssp             ---------HHHHHHHH---HHTCHHHHHHHHH-----------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCE
T ss_pred             ---------HHHHHHHH---HccchhhHHHHHh-----------hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccce
Confidence                     00000000   0000112222111           23799999999884  56778888888874 34667


Q ss_pred             EEEEecCCC----cccHHHhccc---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 017844          163 LILCCNSSS----KVTEAIRSRC---LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (365)
Q Consensus       163 ~Il~t~~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~  235 (365)
                      +|++++.+.    ...+.++||+   .++.++ |+.+++.++|++.+...|+.++++++++|++.+ .|+|+....|..+
T Consensus       133 iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l  210 (213)
T d1l8qa2         133 IILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLI  210 (213)
T ss_dssp             EEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHH
T ss_pred             EEEecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CcHHHHHHHHHHh
Confidence            888888665    2568899997   477785 678899999999999999999999999999997 6899999888877


Q ss_pred             Hh
Q 017844          236 RV  237 (365)
Q Consensus       236 ~~  237 (365)
                      .+
T Consensus       211 ~l  212 (213)
T d1l8qa2         211 KL  212 (213)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.78  E-value=9.6e-18  Score=147.23  Aligned_cols=217  Identities=16%  Similarity=0.203  Sum_probs=136.5

Q ss_pred             cccccCCCCCCccccCHHHHHHHHHHHHc------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCc-cceecccccee
Q 017844            3 WVDKYRPKTLDQVIVHQDIAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAE-KVKVENKTWKI   75 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~~~~~l~~~l~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~-~i~~~~~~~~~   75 (365)
                      +...|+|++   ++|++..++.+..++..      +..++++|+||||+|||++++.+++.+.+.... .+.+++..+  
T Consensus         9 l~~~y~p~~---l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~--   83 (276)
T d1fnna2           9 FSPSYVPKR---LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY--   83 (276)
T ss_dssp             GSTTCCCSC---CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC--
T ss_pred             CCCCCCCCC---CCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhh--
Confidence            567888864   58888877777777642      233469999999999999999999987543321 122222111  


Q ss_pred             cCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh
Q 017844           76 DAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTME  155 (365)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le  155 (365)
                         ......   ...............+...........+....        .....+.++|+++.+.......+...+.
T Consensus        84 ---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~~~~~~  149 (276)
T d1fnna2          84 ---RNFTAI---IGEIARSLNIPFPRRGLSRDEFLALLVEHLRE--------RDLYMFLVLDDAFNLAPDILSTFIRLGQ  149 (276)
T ss_dssp             ---CSHHHH---HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--------TTCCEEEEEETGGGSCHHHHHHHHHHTT
T ss_pred             ---hhhhhh---hhhhHHhhhhhhhhhccchhHHHHHHHHHHhh--------cccccccchhHHHHhhhhhhhhHHHHHh
Confidence               000000   00000000011111111111112222222222        2234788999999988877776666654


Q ss_pred             hh----cCceeEEEEecCCC---cccHHHhccc--eeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH----
Q 017844          156 KY----SASCRLILCCNSSS---KVTEAIRSRC--LNIRINSPTEEQIVKVLEFIAKKE--GLQLPSGFATRLAEK----  220 (365)
Q Consensus       156 ~~----~~~~~~Il~t~~~~---~l~~~l~sR~--~~i~~~~~~~~~~~~iL~~~~~~~--~~~i~~~~~~~i~~~----  220 (365)
                      ..    .....+|++++...   .+.+.+.+|+  ..+.|++++.+++.+++++++...  ...+++++++.+++.    
T Consensus       150 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~  229 (276)
T d1fnna2         150 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ  229 (276)
T ss_dssp             CHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred             ccccccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhh
Confidence            32    23456777777654   5778888887  469999999999999999888763  445899999999885    


Q ss_pred             -----cCCCHHHHHHHHHHHHhc
Q 017844          221 -----SNRSLRRAILSFETCRVQ  238 (365)
Q Consensus       221 -----~~g~lr~ai~~l~~~~~~  238 (365)
                           +.||+|.++++++.+...
T Consensus       230 ~~~~~~~G~~R~a~~ll~~a~~~  252 (276)
T d1fnna2         230 TPLDTNRGDARLAIDILYRSAYA  252 (276)
T ss_dssp             STTCTTSCCHHHHHHHHHHHHHH
T ss_pred             hhhhhcCCCHHHHHHHHHHHHHH
Confidence                 479999999999876544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=6.2e-18  Score=147.33  Aligned_cols=185  Identities=17%  Similarity=0.230  Sum_probs=121.3

Q ss_pred             CCCccccCHHHHHHHHHHHHc-----------C-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC
Q 017844           11 TLDQVIVHQDIAQNLKKLVTE-----------Q-DCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA   77 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~   77 (365)
                      +|++++|.+.+++.|++.+..           | ..+. +||+||||||||++++++|+++..+-   +.+++..+    
T Consensus         2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~---~~i~~~~l----   74 (258)
T d1e32a2           2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEI----   74 (258)
T ss_dssp             CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEECHHHH----
T ss_pred             ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeE---EEEEchhh----
Confidence            699999999999999887531           2 2233 99999999999999999999753211   11111000    


Q ss_pred             CCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH-----------H
Q 017844           78 GSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE-----------A  146 (365)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~-----------~  146 (365)
                                          . +.........++..+.....         ..+.|++|||+|.+...           .
T Consensus        75 --------------------~-~~~~g~~~~~l~~~f~~A~~---------~~p~il~iDeid~l~~~r~~~~~~~~~~~  124 (258)
T d1e32a2          75 --------------------M-SKLAGESESNLRKAFEEAEK---------NAPAIIFIDELDAIAPKREKTHGEVERRI  124 (258)
T ss_dssp             --------------------T-TSCTTHHHHHHHHHHHHHHH---------TCSEEEEESSGGGTCCHHHHCCCTTHHHH
T ss_pred             --------------------c-ccccccHHHHHHHHHHHHHh---------cCCeEEEehhhhhhccCCCCCCCchHHHH
Confidence                                0 00111112234444444333         23479999999988532           2


Q ss_pred             HHHHHHHHhh--hcCceeEEEEecCCCcccHHHhc--cc-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 017844          147 QHSLRRTMEK--YSASCRLILCCNSSSKVTEAIRS--RC-LNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKS  221 (365)
Q Consensus       147 ~~~Ll~~le~--~~~~~~~Il~t~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~  221 (365)
                      ...++..+..  ...++.+|++||+++.+++++++  |+ ..++|+.|+.+++..+++..+.+.... ++..++.|++.+
T Consensus       125 ~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t  203 (258)
T d1e32a2         125 VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANET  203 (258)
T ss_dssp             HHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHC
T ss_pred             HHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccc-cccchhhhhhcc
Confidence            3344444443  23457788899999999999988  77 489999999999999999887654332 223478899988


Q ss_pred             CC-CHHHHHHHHH
Q 017844          222 NR-SLRRAILSFE  233 (365)
Q Consensus       222 ~g-~lr~ai~~l~  233 (365)
                      .| +.++..++++
T Consensus       204 ~G~s~adl~~lv~  216 (258)
T d1e32a2         204 HGHVGADLAALCS  216 (258)
T ss_dssp             TTCCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHH
Confidence            77 3333333433

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.73  E-value=1.7e-17  Score=146.42  Aligned_cols=218  Identities=16%  Similarity=0.186  Sum_probs=126.6

Q ss_pred             CcccccCCCCCCccccCHHHHHHHH----HHHHcCCCC-----eEEEECCCCCcHHHHHHHHHHHhcCCCC------ccc
Q 017844            2 LWVDKYRPKTLDQVIVHQDIAQNLK----KLVTEQDCP-----HLLFYGPPGSGKKTLIMALLRQVFGPGA------EKV   66 (365)
Q Consensus         2 ~w~~k~rP~~~~~iig~~~~~~~l~----~~l~~~~~~-----~lll~Gp~G~GKTtla~~la~~l~~~~~------~~i   66 (365)
                      +|..+|+|.++   .|.+...+.+.    ..+..|..+     +++|+||||||||++++++++.+.....      ...
T Consensus         8 ~l~~~~~P~~~---~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~   84 (287)
T d1w5sa2           8 VFDENYIPPEL---RVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA   84 (287)
T ss_dssp             GGSTTCCCSSC---SSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hcCCccCCCCC---CCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceee
Confidence            46789999655   45544444443    334444332     2677899999999999999998743211      011


Q ss_pred             eeccccceecCCCcceeccccccccc-cceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCC---
Q 017844           67 KVENKTWKIDAGSRNIDLELTTLSSA-NHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKL---  142 (365)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L---  142 (365)
                      ++++...     ....    ...... ..........+.......+.+......        .....++++||++.+   
T Consensus        85 ~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~iide~d~l~~~  147 (287)
T d1w5sa2          85 YVNAFNA-----PNLY----TILSLIVRQTGYPIQVRGAPALDILKALVDNLYV--------ENHYLLVILDEFQSMLSS  147 (287)
T ss_dssp             EEEGGGC-----CSHH----HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH--------HTCEEEEEEESTHHHHSC
T ss_pred             eeccccc-----cchh----hHHHHHhhhcccccccccchHHHHHHHHHHHHHh--------ccCccccceeEEEEeccc
Confidence            1111000     0000    000000 000000111111111112222222222        223478899999865   


Q ss_pred             ---CHHHHHHHHHHHhhh-----cCceeEEEEecCCCc------ccHHHhcc-ceeEEecCCCHHHHHHHHHHHHHHc--
Q 017844          143 ---SREAQHSLRRTMEKY-----SASCRLILCCNSSSK------VTEAIRSR-CLNIRINSPTEEQIVKVLEFIAKKE--  205 (365)
Q Consensus       143 ---~~~~~~~Ll~~le~~-----~~~~~~Il~t~~~~~------l~~~l~sR-~~~i~~~~~~~~~~~~iL~~~~~~~--  205 (365)
                         ..+....+..+++..     .....+|++++....      ..+.+.+| +..+.|++++.+++.++++.+++..  
T Consensus       148 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~  227 (287)
T d1w5sa2         148 PRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR  227 (287)
T ss_dssp             TTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC
T ss_pred             cccchhHHHHHHHHHHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhc
Confidence               334555566666543     235667777776652      33566666 4699999999999999999998764  


Q ss_pred             CCCCCHHHHHHHHHHc------CCCHHHHHHHHHHHHhcC
Q 017844          206 GLQLPSGFATRLAEKS------NRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       206 ~~~i~~~~~~~i~~~~------~g~lr~ai~~l~~~~~~~  239 (365)
                      ...+++++++.+++.+      .||+|+|+++|+.+...+
T Consensus       228 ~~~~~~~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~~~A  267 (287)
T d1w5sa2         228 DTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMA  267 (287)
T ss_dssp             TTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHH
Confidence            3458999999999865      699999999998765443

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.6e-18  Score=148.09  Aligned_cols=177  Identities=22%  Similarity=0.270  Sum_probs=111.8

Q ss_pred             CC-CCCccccCHHHHHHHHHHHH-----------cCCC-C-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce
Q 017844            9 PK-TLDQVIVHQDIAQNLKKLVT-----------EQDC-P-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK   74 (365)
Q Consensus         9 P~-~~~~iig~~~~~~~l~~~l~-----------~~~~-~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~   74 (365)
                      |+ +|++++|.+++++.|.+.+.           .|.. + ++||+||||||||++++++|+++..+   .+.+++..+ 
T Consensus         2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~---~~~~~~~~l-   77 (265)
T d1r7ra3           2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGPEL-   77 (265)
T ss_dssp             CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCE---EEEECHHHH-
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCc---EEEEEHHHh-
Confidence            55 89999998887777776552           1322 2 39999999999999999999987322   111111000 


Q ss_pred             ecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH---------
Q 017844           75 IDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE---------  145 (365)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~---------  145 (365)
                                          ..    .........++..+......         .+.|++|||+|.+...         
T Consensus        78 --------------------~~----~~~~~~~~~l~~~f~~A~~~---------~p~il~ideid~l~~~~~~~~~~~~  124 (265)
T d1r7ra3          78 --------------------LT----MWFGESEANVREIFDKARQA---------APCVLFFDELDSIAKARGGNIGDGG  124 (265)
T ss_dssp             --------------------HT----SCTTTHHHHHHHHHHHHHHT---------CSEEEEESSGGGTCCHHHHCCCTTH
T ss_pred             --------------------hh----ccccchHHHHHHHHHHHHhc---------CCcceeHHhhhhccccCCCcCCCCc
Confidence                                00    11111122344555544332         3479999999977421         


Q ss_pred             -----HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHhc--cce-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 017844          146 -----AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIRS--RCL-NIRINSPTEEQIVKVLEFIAKKEGLQLPSGFAT  215 (365)
Q Consensus       146 -----~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~  215 (365)
                           ..+.|+..++..  ..++.+|++||.++.+++++++  |+. .++|++|+.+++.++++..+.+.... .+..++
T Consensus       125 ~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~l~  203 (265)
T d1r7ra3         125 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLE  203 (265)
T ss_dssp             HHHHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-----CCCCH
T ss_pred             HHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCch-hhhhHH
Confidence                 234566656533  2346788889999999999986  675 89999999999999998766532221 122456


Q ss_pred             HHHHHcCC
Q 017844          216 RLAEKSNR  223 (365)
Q Consensus       216 ~i~~~~~g  223 (365)
                      .+++.+.|
T Consensus       204 ~la~~t~g  211 (265)
T d1r7ra3         204 FLAKMTNG  211 (265)
T ss_dssp             HHHHHHCS
T ss_pred             HHHhcCCC
Confidence            77776554

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.2e-16  Score=138.10  Aligned_cols=200  Identities=15%  Similarity=0.221  Sum_probs=138.4

Q ss_pred             CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      +-..++.++|.++.++.+...+.+....|++|.||||+|||++++.+|+.+........                     
T Consensus        13 ~~~~ld~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~---------------------   71 (268)
T d1r6bx2          13 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV---------------------   71 (268)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGG---------------------
T ss_pred             HcCCCCcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccc---------------------
Confidence            44567889999999999999998777778999999999999999999998754332110                     


Q ss_pred             ccccccceecCCCC--cC----ccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC---------HHHHHHHHH
Q 017844           88 TLSSANHVELSPSD--AG----FQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS---------REAQHSLRR  152 (365)
Q Consensus        88 ~~~~~~~~~~~~~~--~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~---------~~~~~~Ll~  152 (365)
                       ......+.+....  .+    ..-...+..++..+.         ..+..|++|||+|.+.         .++.+.|..
T Consensus        72 -l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~---------~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp  141 (268)
T d1r6bx2          72 -MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE---------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP  141 (268)
T ss_dssp             -GTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS---------SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSS
T ss_pred             -cccceeEEeeechHhccCccchhHHHHHHHHHHHhh---------ccCCceEEecchHHHhcCCCCCCccccHHHHhhH
Confidence             1111112222111  11    111112333444432         2234689999999883         123344434


Q ss_pred             HHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcC-
Q 017844          153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----KEGLQLPSGFATRLAEKSN-  222 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~----~~~~~i~~~~~~~i~~~~~-  222 (365)
                      .|.  .+..++|.+|+..+     .-++++.+||..|.+.+|+.++..++|.....    .+++.++++++..+++.+. 
T Consensus       142 ~L~--rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~r  219 (268)
T d1r6bx2         142 LLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK  219 (268)
T ss_dssp             CSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             HHh--CCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHh
Confidence            444  34678888887543     45788999999999999999999999986553    4689999999999998653 


Q ss_pred             -----CCHHHHHHHHHHHHhcCC
Q 017844          223 -----RSLRRAILSFETCRVQQY  240 (365)
Q Consensus       223 -----g~lr~ai~~l~~~~~~~~  240 (365)
                           .-+.+|+.+|+.+++...
T Consensus       220 yi~~~~~PdKAIdllDea~a~~~  242 (268)
T d1r6bx2         220 YINDRHLPDKAIDVIDEAGARAR  242 (268)
T ss_dssp             HCTTSCTTHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCcHHHHHHHHHHHHHH
Confidence                 568899999998876543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=3.7e-15  Score=135.87  Aligned_cols=200  Identities=19%  Similarity=0.300  Sum_probs=133.0

Q ss_pred             CCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccc
Q 017844            8 RPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELT   87 (365)
Q Consensus         8 rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   87 (365)
                      +-..++.++|.+..++.+...+.+....|.+|.||||+|||+++..+|..+........                     
T Consensus        17 ~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~---------------------   75 (387)
T d1qvra2          17 AEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEG---------------------   75 (387)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTT---------------------
T ss_pred             HcCCCCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHH---------------------
Confidence            33467889999999999999988776667889999999999999999998754332110                     


Q ss_pred             ccccccceecCCCC--cCc----cchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCC--------HHHHHHHHHH
Q 017844           88 TLSSANHVELSPSD--AGF----QDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLS--------REAQHSLRRT  153 (365)
Q Consensus        88 ~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~--------~~~~~~Ll~~  153 (365)
                       +.....+.+....  .|.    .....+..++..+...        .+.-|++|||+|.+-        .++.+.|...
T Consensus        76 -l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~--------~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~  146 (387)
T d1qvra2          76 -LKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS--------QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPA  146 (387)
T ss_dssp             -STTCEEEEECC-----------CHHHHHHHHHHHHHTT--------CSSEEEEECCC-------------------HHH
T ss_pred             -HcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccC--------CCceEEEeccHHHHhcCCCCCCcccHHHHHHHH
Confidence             1111112222211  111    1111233444444332        223689999999883        2345667777


Q ss_pred             HhhhcCceeEEEEecCCC----cccHHHhccceeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHc----
Q 017844          154 MEKYSASCRLILCCNSSS----KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAK----KEGLQLPSGFATRLAEKS----  221 (365)
Q Consensus       154 le~~~~~~~~Il~t~~~~----~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~----~~~~~i~~~~~~~i~~~~----  221 (365)
                      |..  +..++|.+|+..+    .-++++.+||+.|.+.+|+.++...+|+....    .+++.++++++..+++.+    
T Consensus       147 L~r--g~~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi  224 (387)
T d1qvra2         147 LAR--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYI  224 (387)
T ss_dssp             HHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHC
T ss_pred             HhC--CCcceeeecCHHHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhccccc
Confidence            764  4788999888543    23688999999999999999999999987654    358999999999999965    


Q ss_pred             --CCCHHHHHHHHHHHHhcC
Q 017844          222 --NRSLRRAILSFETCRVQQ  239 (365)
Q Consensus       222 --~g~lr~ai~~l~~~~~~~  239 (365)
                        ..-+.+|+.+|+.+++..
T Consensus       225 ~~r~~PdKAidlld~a~a~~  244 (387)
T d1qvra2         225 TERRLPDKAIDLIDEAAARL  244 (387)
T ss_dssp             CSSCTHHHHHHHHHHHHHHH
T ss_pred             ccccChhhHHHHHHHHHHHH
Confidence              367899999999877654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=2.2e-14  Score=127.71  Aligned_cols=183  Identities=17%  Similarity=0.332  Sum_probs=118.4

Q ss_pred             ccccCHHHHHHHHHHHHc--------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844           14 QVIVHQDIAQNLKKLVTE--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~--------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      .++||+++++.+...+..        .+.. .++|+||+|+|||.+|+.+|+.+++.....+.++...+ ..+..    .
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~-~~~~~----~   98 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY-MEKHA----V   98 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC-CSSGG----G
T ss_pred             eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc-ccchh----h
Confidence            468999999888776642        1222 38999999999999999999988766655555655444 10000    0


Q ss_pred             cccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh-------
Q 017844           85 ELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY-------  157 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~-------  157 (365)
                             ...+.-.+.-.|.....   .+.+.+..         ..+.|+++||+++..++.++.|++++++.       
T Consensus        99 -------~~L~g~~~gyvG~~~~~---~l~~~~~~---------~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~g  159 (315)
T d1qvra3          99 -------SRLIGAPPGYVGYEEGG---QLTEAVRR---------RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHG  159 (315)
T ss_dssp             -------GGC-----------------CHHHHHHH---------CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSS
T ss_pred             -------hhhcCCCCCCcCcccCC---hHHHHHHh---------CCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCC
Confidence                   00011111101111111   12222222         23479999999999999999999999863       


Q ss_pred             ----cCceeEEEEecCC--------------------------CcccHHHhccce-eEEecCCCHHHHHHHHHHHHHH--
Q 017844          158 ----SASCRLILCCNSS--------------------------SKVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK--  204 (365)
Q Consensus       158 ----~~~~~~Il~t~~~--------------------------~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~--  204 (365)
                          ..++.||++||-.                          ..+.|.+.+|+. ++.|.+++.+++.+++...+.+  
T Consensus       160 r~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~  239 (315)
T d1qvra3         160 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLR  239 (315)
T ss_dssp             CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred             cEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHH
Confidence                1345566666631                          237788899996 6789999999999998654432  


Q ss_pred             -----cC--CCCCHHHHHHHHHH
Q 017844          205 -----EG--LQLPSGFATRLAEK  220 (365)
Q Consensus       205 -----~~--~~i~~~~~~~i~~~  220 (365)
                           .+  +.+++++.+.|++.
T Consensus       240 ~rl~~~~i~l~i~~~~~~~L~~~  262 (315)
T d1qvra3         240 ARLAEKRISLELTEAAKDFLAER  262 (315)
T ss_dssp             HHHHTTTCEEEECHHHHHHHHHH
T ss_pred             HHHHhccccccccHHHHHHHHHh
Confidence                 33  36789999999986

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=6.7e-14  Score=124.78  Aligned_cols=179  Identities=19%  Similarity=0.277  Sum_probs=117.3

Q ss_pred             ccccCHHHHHHHHHHHHc--------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceec
Q 017844           14 QVIVHQDIAQNLKKLVTE--------QDCP-HLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDL   84 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~--------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~   84 (365)
                      .++||+++++.+...+..        .+.. .++|+||+|+|||.+|+.+|+.+..   ..+.+++..+           
T Consensus        23 ~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~---~~i~~d~s~~-----------   88 (315)
T d1r6bx3          23 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMSEY-----------   88 (315)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC---EEEEEEGGGC-----------
T ss_pred             eecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccC---CeeEeccccc-----------
Confidence            578999999988877741        2222 3899999999999999999997642   2344444333           


Q ss_pred             cccccccccc-eecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhh------
Q 017844           85 ELTTLSSANH-VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKY------  157 (365)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~------  157 (365)
                           +.... ..+.....+.. .......+......        ..+.|+++||++...++.++.|++.+++.      
T Consensus        89 -----~~~~~~~~l~g~~~gy~-g~~~~~~l~~~~~~--------~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~  154 (315)
T d1r6bx3          89 -----MERHTVSRLIGAPPGYV-GFDQGGLLTDAVIK--------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNN  154 (315)
T ss_dssp             -----SSSSCCSSSCCCCSCSH-HHHHTTHHHHHHHH--------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETT
T ss_pred             -----cchhhhhhhcccCCCcc-ccccCChhhHHHHh--------CccchhhhcccccccchHhhhhHHhhccceecCCC
Confidence                 11111 11111111211 11111111111222        23479999999999999999999999862      


Q ss_pred             -----cCceeEEEEecCCC-------------------------cccHHHhccce-eEEecCCCHHHHHHHHHHHHHH--
Q 017844          158 -----SASCRLILCCNSSS-------------------------KVTEAIRSRCL-NIRINSPTEEQIVKVLEFIAKK--  204 (365)
Q Consensus       158 -----~~~~~~Il~t~~~~-------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~~~~~--  204 (365)
                           -.++.+|+++|-..                         .+.|.+..|+. ++.|.+++.+++.+++...+.+  
T Consensus       155 Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~  234 (315)
T d1r6bx3         155 GRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQ  234 (315)
T ss_dssp             TEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHH
Confidence                 23456777777321                         25678888985 8999999999999887665532  


Q ss_pred             -----cC--CCCCHHHHHHHHHH
Q 017844          205 -----EG--LQLPSGFATRLAEK  220 (365)
Q Consensus       205 -----~~--~~i~~~~~~~i~~~  220 (365)
                           .+  +.++++++++|++.
T Consensus       235 ~~l~~~~i~l~~~~~a~~~l~~~  257 (315)
T d1r6bx3         235 VQLDQKGVSLEVSQEARNWLAEK  257 (315)
T ss_dssp             HHHHHTTEEEEECHHHHHHHHHH
T ss_pred             HHHHhcCcchhhHHHHHHHHHHh
Confidence                 23  35789999999885

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.56  E-value=3.3e-14  Score=122.30  Aligned_cols=158  Identities=16%  Similarity=0.248  Sum_probs=94.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (365)
                      +||+||||||||++|+++|+++..+.   +.+++..                        ......+......+++++..
T Consensus        43 vLL~GppGtGKT~la~alA~~~~~~~---~~i~~~~------------------------~~~g~~~~~~~~~i~~if~~   95 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEESNFPF---IKICSPD------------------------KMIGFSETAKCQAMKKIFDD   95 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGG------------------------GCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHhhcccccc---ccccccc------------------------ccccccccchhhhhhhhhhh
Confidence            99999999999999999999863321   1111100                        00000000111124444444


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCCC----------CHHHHHHHHHHHhhhcC---ceeEEEEecCCCcccHH-Hhccce
Q 017844          117 MAKNRPIDTKGKRGFKVLVLNEVDKL----------SREAQHSLRRTMEKYSA---SCRLILCCNSSSKVTEA-IRSRCL  182 (365)
Q Consensus       117 ~~~~~~~~~~~~~~~~vliiDE~~~L----------~~~~~~~Ll~~le~~~~---~~~~Il~t~~~~~l~~~-l~sR~~  182 (365)
                      ...         ..+.|++|||+|.+          .....+.|+..++....   ++.+|.+||+++.+++. +++||.
T Consensus        96 A~~---------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~  166 (246)
T d1d2na_          96 AYK---------SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFS  166 (246)
T ss_dssp             HHT---------SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSS
T ss_pred             hhh---------cccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCccc
Confidence            332         34579999999765          23445667777765432   35677788887777654 667774


Q ss_pred             -eEEecCCC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-----CHHHHHHHHHHH
Q 017844          183 -NIRINSPT-EEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNR-----SLRRAILSFETC  235 (365)
Q Consensus       183 -~i~~~~~~-~~~~~~iL~~~~~~~~~~i~~~~~~~i~~~~~g-----~lr~ai~~l~~~  235 (365)
                       .++++.++ .+++.+++...     ..+++.....+++.+.|     .+++++..++..
T Consensus       167 ~~i~~P~~~~r~~il~~l~~~-----~~~~~~~~~~i~~~~~g~~~~~~ik~ll~~ie~a  221 (246)
T d1d2na_         167 TTIHVPNIATGEQLLEALELL-----GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS  221 (246)
T ss_dssp             EEEECCCEEEHHHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred             eEEecCCchhHHHHHHHHHhc-----cCCChHHHHHHHHHcCCCccchhHHHHHHHHHHH
Confidence             67775543 44555555432     24667778888887766     477777776654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.54  E-value=1.2e-14  Score=129.57  Aligned_cols=155  Identities=16%  Similarity=0.288  Sum_probs=94.2

Q ss_pred             cccCHHHHHHHHHHHHc--------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844           15 VIVHQDIAQNLKKLVTE--------------QDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus        15 iig~~~~~~~l~~~l~~--------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      ++||+++++.+..++..              ....++||+||||||||.+|+++|+.+..+   .+.+++..+       
T Consensus        16 ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~---~~~i~~s~~-------   85 (309)
T d1ofha_          16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKF-------   85 (309)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGG-------
T ss_pred             ccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccc---hhccccccc-------
Confidence            68999999999877621              123349999999999999999999986422   222332222       


Q ss_pred             ceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCH------------HHHH
Q 017844           81 NIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSR------------EAQH  148 (365)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~------------~~~~  148 (365)
                                    .+  ...........++.........    .....++.|+++||+|.+.+            ..++
T Consensus        86 --------------~~--~~~~~~~~~~~~~~~f~~a~~~----~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~  145 (309)
T d1ofha_          86 --------------TE--VGYVGKEVDSIIRDLTDSAGGA----IDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQR  145 (309)
T ss_dssp             --------------SS--CCSGGGSTTHHHHHHHHTTTTC----HHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHH
T ss_pred             --------------cc--ceeEeeeccccccccchhhhcc----cccccCCceEEehhhhhhhhhccCcccchhhhHHHH
Confidence                          00  0001111111222322111000    00011357999999998753            2456


Q ss_pred             HHHHHHhhh----------cCceeEEEE----ecCCCcccHHHhccce-eEEecCCCHHHHHHHHH
Q 017844          149 SLRRTMEKY----------SASCRLILC----CNSSSKVTEAIRSRCL-NIRINSPTEEQIVKVLE  199 (365)
Q Consensus       149 ~Ll~~le~~----------~~~~~~Il~----t~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~  199 (365)
                      .|+..++..          ..++.||++    .+.+..+.|+++.|+. .+.|++|+.+++.+++.
T Consensus       146 ~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~  211 (309)
T d1ofha_         146 DLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT  211 (309)
T ss_dssp             HHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred             HhhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHH
Confidence            788888742          112334444    2345578899999985 79999999999999875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=2e-14  Score=117.32  Aligned_cols=160  Identities=18%  Similarity=0.313  Sum_probs=108.4

Q ss_pred             cCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccc
Q 017844            7 YRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLEL   86 (365)
Q Consensus         7 ~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (365)
                      -+...++.++|+++.++.+...+.+....|.+|+||||+|||+++..+|+.+.......                     
T Consensus        16 a~~g~ld~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~---------------------   74 (195)
T d1jbka_          16 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPE---------------------   74 (195)
T ss_dssp             HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCG---------------------
T ss_pred             HHcCCCCCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCH---------------------
Confidence            34567888999999999999999887777899999999999999999999875433211                     


Q ss_pred             cccccccceecCCCC--cCccchh----HHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHH--------HHHHHHH
Q 017844           87 TTLSSANHVELSPSD--AGFQDRY----VVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSRE--------AQHSLRR  152 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~--~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~--------~~~~Ll~  152 (365)
                       .+.....+.+....  .+...+.    .+..+++++...        .+.-|++|||+|.+-..        +.+.|..
T Consensus        75 -~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~--------~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp  145 (195)
T d1jbka_          75 -GLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGNMLKP  145 (195)
T ss_dssp             -GGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHS--------TTTEEEEEETGGGGTT------CCCCHHHHHH
T ss_pred             -HHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcC--------CCcEEEEcchHHHHhcCCCCCCcccHHHHHHH
Confidence             11111122222111  1111112    233444444322        22369999999987422        3466777


Q ss_pred             HHhhhcCceeEEEEecCCC-----cccHHHhccceeEEecCCCHHHHHHHH
Q 017844          153 TMEKYSASCRLILCCNSSS-----KVTEAIRSRCLNIRINSPTEEQIVKVL  198 (365)
Q Consensus       153 ~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~iL  198 (365)
                      .|+.  ....+|.+|+..+     .-++++.+||..|.+.+|+.++...+|
T Consensus       146 ~L~r--g~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         146 ALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             HHhC--CCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence            7774  4688888887544     357899999999999999999987765

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.49  E-value=1.8e-12  Score=111.18  Aligned_cols=202  Identities=15%  Similarity=0.107  Sum_probs=121.6

Q ss_pred             ccccCHHHHHHHHHHHHc-C-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccccc
Q 017844           14 QVIVHQDIAQNLKKLVTE-Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSS   91 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~-~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   91 (365)
                      ++||+....+.+.+.++. . ...+++|+||+|||||++|+++...-.......+.+++..+         ..  .. ..
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~---------~~--~~-~~   68 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASI---------PR--DI-FE   68 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTS---------CH--HH-HH
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhh---------hh--cc-cH
Confidence            478888777777766654 2 22339999999999999999998743222222222222111         00  00 00


Q ss_pred             ccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc-----------Cc
Q 017844           92 ANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS-----------AS  160 (365)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~-----------~~  160 (365)
                      ...+............ .....+.            ..+...++|||++.|+...|..|++.+++..           .+
T Consensus        69 ~~lfg~~~~~~~~~~~-~~~g~l~------------~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~  135 (247)
T d1ny5a2          69 AELFGYEKGAFTGAVS-SKEGFFE------------LADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVN  135 (247)
T ss_dssp             HHHHCBCTTSSTTCCS-CBCCHHH------------HTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECC
T ss_pred             HHhcCcccCCcCCccc-ccCCHHH------------ccCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecC
Confidence            0000000000000000 0000000            0122589999999999999999999997531           24


Q ss_pred             eeEEEEecCCC-------cccHHHhccce--eEEecCCC--HHHHHHHHHHHH----HHcCC---CCCHHHHHHHHHH-c
Q 017844          161 CRLILCCNSSS-------KVTEAIRSRCL--NIRINSPT--EEQIVKVLEFIA----KKEGL---QLPSGFATRLAEK-S  221 (365)
Q Consensus       161 ~~~Il~t~~~~-------~l~~~l~sR~~--~i~~~~~~--~~~~~~iL~~~~----~~~~~---~i~~~~~~~i~~~-~  221 (365)
                      +++|++|+...       .+.+.+..|+.  .+.++|+.  .+++..++...+    .+.+.   .+++++++.+.+. +
T Consensus       136 ~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~W  215 (247)
T d1ny5a2         136 VRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPW  215 (247)
T ss_dssp             CEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCC
T ss_pred             eEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCC
Confidence            67888887643       36667777764  57777774  456655555444    34443   4789999999885 5


Q ss_pred             CCCHHHHHHHHHHHHhcCC
Q 017844          222 NRSLRRAILSFETCRVQQY  240 (365)
Q Consensus       222 ~g~lr~ai~~l~~~~~~~~  240 (365)
                      .||+|++.+.++.++..+.
T Consensus       216 PGNl~EL~~~l~~a~~~~~  234 (247)
T d1ny5a2         216 YGNVRELKNVIERAVLFSE  234 (247)
T ss_dssp             TTHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHhCC
Confidence            8999999999998876653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.47  E-value=9e-14  Score=125.38  Aligned_cols=178  Identities=16%  Similarity=0.160  Sum_probs=92.9

Q ss_pred             CCC-CCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccce-----ecCCCcc
Q 017844            8 RPK-TLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWK-----IDAGSRN   81 (365)
Q Consensus         8 rP~-~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~-----~~~~~~~   81 (365)
                      ||. .|.+++||+.++..+.-.+-....+|+||.||||+|||++|+.++.-| .+- .  ...+..+.     ..+....
T Consensus         1 ~~~~~f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~iL-p~~-~--~~~~~~~~~~~~~~~~~~~~   76 (333)
T d1g8pa_           1 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL-PEI-E--AVEGCPVSSPNVEMIPDWAT   76 (333)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS-CCE-E--EETTCTTCCSSGGGSCTTCC
T ss_pred             CCCCChhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHhC-CCc-h--hhccCccccCccccccchhh
Confidence            455 799999999999877765543333569999999999999999999844 211 0  00010000     0000000


Q ss_pred             eeccccccccccc-eecCCCC--cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhc
Q 017844           82 IDLELTTLSSANH-VELSPSD--AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus        82 ~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~  158 (365)
                      ... ......... .......  .+....................+.-......|+++||++.+.++.++.|++.||+..
T Consensus        77 ~~~-~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~  155 (333)
T d1g8pa_          77 VLS-TNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE  155 (333)
T ss_dssp             CSC-CCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred             ccc-cCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCe
Confidence            000 000000000 1110000  000000001111111000000000011134799999999999999999999999642


Q ss_pred             -------------CceeEEEEecCCC-cccHHHhccce-eEEecCCC
Q 017844          159 -------------ASCRLILCCNSSS-KVTEAIRSRCL-NIRINSPT  190 (365)
Q Consensus       159 -------------~~~~~Il~t~~~~-~l~~~l~sR~~-~i~~~~~~  190 (365)
                                   ....++.++|..+ ++.+++.+|+. .+.+..+.
T Consensus       156 v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~  202 (333)
T d1g8pa_         156 NVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPR  202 (333)
T ss_dssp             EEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCC
T ss_pred             EEecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcc
Confidence                         2333444444333 68999999996 57776654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.42  E-value=1.8e-12  Score=117.24  Aligned_cols=176  Identities=15%  Similarity=0.192  Sum_probs=105.4

Q ss_pred             ccccCHHHHHHHHHHHHc-----------------------------C-CCCeEEEECCCCCcHHHHHHHHHHHhcCCCC
Q 017844           14 QVIVHQDIAQNLKKLVTE-----------------------------Q-DCPHLLFYGPPGSGKKTLIMALLRQVFGPGA   63 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~-----------------------------~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~   63 (365)
                      .++||+++++.+..++.+                             . ...++||.||+|||||.+|+.+|+.+..   
T Consensus        18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~---   94 (364)
T d1um8a_          18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI---   94 (364)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC---
T ss_pred             eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhccc---
Confidence            468999999888766521                             2 2334999999999999999999986422   


Q ss_pred             ccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCC--
Q 017844           64 EKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK--  141 (365)
Q Consensus        64 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~--  141 (365)
                      ..+.+++..|                +.   ..+...+    ....+.+.+..    .+.. -...++.++++||++.  
T Consensus        95 ~~ir~D~s~~----------------~e---~gyvg~d----v~~~i~~l~~~----~~~~-v~~~~~~iv~lDEieK~~  146 (364)
T d1um8a_          95 PIAISDATSL----------------TE---AGYVGED----VENILTRLLQA----SDWN-VQKAQKGIVFIDEIDKIS  146 (364)
T ss_dssp             CEEEEEGGGC----------------C---------------CTHHHHHHHHH----TTTC-HHHHTTSEEEEETGGGC-
T ss_pred             ceeehhhhhc----------------cc---chhhHhh----hccchhhhhhh----chhH-HHHhhcccchhhhhhhhc
Confidence            2233333333                11   1111111    11123333322    1100 0123457999999988  


Q ss_pred             ------------CCHHHHHHHHHHHhhhc-------------CceeEEEEecC---------------------------
Q 017844          142 ------------LSREAQHSLRRTMEKYS-------------ASCRLILCCNS---------------------------  169 (365)
Q Consensus       142 ------------L~~~~~~~Ll~~le~~~-------------~~~~~Il~t~~---------------------------  169 (365)
                                  -.+..++.|++.++...             .+..++.+++-                           
T Consensus       147 ~~s~~~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~  226 (364)
T d1um8a_         147 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT  226 (364)
T ss_dssp             -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred             cccccccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhccccccccc
Confidence                        44568999999998411             11112222211                           


Q ss_pred             ----------------------CCcccHHHhccce-eEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHH
Q 017844          170 ----------------------SSKVTEAIRSRCL-NIRINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGF  213 (365)
Q Consensus       170 ----------------------~~~l~~~l~sR~~-~i~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~  213 (365)
                                            ...+.|.+..|+. ++.|.+++.+++.+++..           .+..+|+  .+++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a  306 (364)
T d1um8a_         227 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEA  306 (364)
T ss_dssp             CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHH
T ss_pred             ccccchhhhhhhhccccHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHH
Confidence                                  0015677888885 799999999999999852           2233565  578999


Q ss_pred             HHHHHHH
Q 017844          214 ATRLAEK  220 (365)
Q Consensus       214 ~~~i~~~  220 (365)
                      +++||+.
T Consensus       307 ~~~la~~  313 (364)
T d1um8a_         307 IKEIAQL  313 (364)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999994

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.17  E-value=1.4e-09  Score=94.26  Aligned_cols=217  Identities=12%  Similarity=0.141  Sum_probs=117.7

Q ss_pred             CCcccccCCCCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc
Q 017844            1 MLWVDKYRPKTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR   80 (365)
Q Consensus         1 ~~w~~k~rP~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~   80 (365)
                      |+|..+ .+.+-++++|.++.++.+...    ..++++++||+|+|||++++.+++.+....   .++++..+...+...
T Consensus         1 ~~f~~~-p~~~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~---~~i~~~~~~~~~~~~   72 (283)
T d2fnaa2           1 MLFDTS-PKDNRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINELNLPY---IYLDLRKFEERNYIS   72 (283)
T ss_dssp             CTTCSS-CCCSGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHHTCCE---EEEEGGGGTTCSCCC
T ss_pred             CCcCCC-CCCChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHCCCCe---EEEEecccccccccc
Confidence            556553 335789999999999888654    334599999999999999999988763321   111111110000000


Q ss_pred             ceec----c-------------ccccccccceecCCCC----cCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCC
Q 017844           81 NIDL----E-------------LTTLSSANHVELSPSD----AGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEV  139 (365)
Q Consensus        81 ~~~~----~-------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~  139 (365)
                      ...+    .             ................    ........+.+.++.+...       ..+..++++||+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~i~id~~  145 (283)
T d2fnaa2          73 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA-------SKDNVIIVLDEA  145 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT-------CSSCEEEEEETG
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhh-------cccccccccchh
Confidence            0000    0             0000000000000000    0001111244555555442       234578999998


Q ss_pred             CCCCHHH----HHHHHHHHhhhcCceeEEEEecCCCcc---------c-HHHhccceeEEecCCCHHHHHHHHHHHHHHc
Q 017844          140 DKLSREA----QHSLRRTMEKYSASCRLILCCNSSSKV---------T-EAIRSRCLNIRINSPTEEQIVKVLEFIAKKE  205 (365)
Q Consensus       140 ~~L~~~~----~~~Ll~~le~~~~~~~~Il~t~~~~~l---------~-~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~  205 (365)
                      +.+....    ...+..... ......+++++.....+         . +....+...+.+.+++.++..+++.+.+...
T Consensus       146 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~  224 (283)
T d2fnaa2         146 QELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA  224 (283)
T ss_dssp             GGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred             hhhcccchHHHHHHHHHHHH-hhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhc
Confidence            7764322    223333333 23456667666543211         1 1112234679999999999999999988877


Q ss_pred             CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 017844          206 GLQLPSGFATRLAEKSNRSLRRAILSFETC  235 (365)
Q Consensus       206 ~~~i~~~~~~~i~~~~~g~lr~ai~~l~~~  235 (365)
                      +++.+  .++.+.+.++|.+.-.......+
T Consensus       225 ~~~~~--~~~~i~~~~~G~P~~L~~~~~~~  252 (283)
T d2fnaa2         225 DIDFK--DYEVVYEKIGGIPGWLTYFGFIY  252 (283)
T ss_dssp             TCCCC--CHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             CCCHH--HHHHHHHHhCCCHHHHHHHHHHH
Confidence            76644  47899999999997544333334

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=1.9e-11  Score=103.05  Aligned_cols=150  Identities=15%  Similarity=0.247  Sum_probs=84.3

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceecccccc------ccccceecCCCC
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTTL------SSANHVELSPSD  101 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~  101 (365)
                      +..|..  +.|.||+|+||||+++++++ +..|+.|.+.+++.+....+ ..+...+.+...      +..+.+.+....
T Consensus        29 v~~Ge~--~~liGpsGaGKSTLl~~i~G-l~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~  105 (239)
T d1v43a3          29 IKDGEF--LVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI  105 (239)
T ss_dssp             ECTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-
T ss_pred             ECCCCE--EEEECCCCChHHHHHHHHHc-CCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHH
Confidence            344555  89999999999999999999 77899999999987651111 111111100000      000001111111


Q ss_pred             cCccchhHHHHHHHHHHhcC---------CCCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-
Q 017844          102 AGFQDRYVVQEVIKEMAKNR---------PIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-  158 (365)
Q Consensus       102 ~~~~~~~~~~~~l~~~~~~~---------~~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-  158 (365)
                      .+ .++...++...++....         +..+|+            ..+++++++||+ ..|++.....+++.+.+.. 
T Consensus       106 ~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~  184 (239)
T d1v43a3         106 KK-FPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ  184 (239)
T ss_dssp             -C-CCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             cC-CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHH
Confidence            11 11112222222222111         112232            247899999998 7899999999888888753 


Q ss_pred             C-ceeEEEEecCCCcccHHHhcccee
Q 017844          159 A-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       159 ~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      . +..+|++|++.+. ...+.+|+.+
T Consensus       185 ~~g~tii~vTHd~~~-a~~~~dri~v  209 (239)
T d1v43a3         185 KLKVTTIYVTHDQVE-AMTMGDRIAV  209 (239)
T ss_dssp             HHTCEEEEEESCHHH-HHHHCSEEEE
T ss_pred             hcCCeEEEEeCCHHH-HHHhCCEEEE
Confidence            2 5677888877653 2455666543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=3.7e-11  Score=100.88  Aligned_cols=151  Identities=17%  Similarity=0.293  Sum_probs=79.4

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecC-CCcceeccccc------cccccceecCCCC
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDA-GSRNIDLELTT------LSSANHVELSPSD  101 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~  101 (365)
                      +..|..  +.|.||+|+||||+++++++ +..++.+.+.+++......+ ..+...+.+..      .+..+.+.+...-
T Consensus        23 i~~Gei--~~liGpsGsGKSTLl~~i~G-l~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~   99 (232)
T d2awna2          23 IHEGEF--VVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL   99 (232)
T ss_dssp             ECTTCE--EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC----------------
T ss_pred             EcCCCE--EEEECCCCChHHHHHHHHhc-CCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHH
Confidence            344555  89999999999999999998 78899999999887651111 11111110000      0000011111111


Q ss_pred             cCccch---hHHHHHHHHHH-----hcCCCCCCC------------CCCceEEEEeCC-CCCCHHHHHHHHHHHhhh--c
Q 017844          102 AGFQDR---YVVQEVIKEMA-----KNRPIDTKG------------KRGFKVLVLNEV-DKLSREAQHSLRRTMEKY--S  158 (365)
Q Consensus       102 ~~~~~~---~~~~~~l~~~~-----~~~~~~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~--~  158 (365)
                      .+....   ..+.+.++.+.     ...+..+|+            ..+++++++||+ ..|++.....+++.|.+.  .
T Consensus       100 ~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~  179 (232)
T d2awna2         100 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR  179 (232)
T ss_dssp             -----CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            111100   11222222211     111112232            137899999998 889999888888888764  2


Q ss_pred             CceeEEEEecCCCcccHHHhcccee
Q 017844          159 ASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       159 ~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      .+..+|++|++.+. ...+.+|+.+
T Consensus       180 ~g~tii~vTHd~~~-a~~~~dri~v  203 (232)
T d2awna2         180 LGRTMIYVTHDQVE-AMTLADKIVV  203 (232)
T ss_dssp             SCCEEEEEESCHHH-HHHHCSEEEE
T ss_pred             cCCEEEEEeCCHHH-HHHhCCEEEE
Confidence            35677777776553 3455677643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.15  E-value=2e-11  Score=103.00  Aligned_cols=145  Identities=14%  Similarity=0.251  Sum_probs=86.8

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR  107 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (365)
                      .+..|..  +.|.||+|+||||+++++++ +..++.|.+.+++............      ......+.+..++....+.
T Consensus        25 ~i~~Ge~--~~liG~sGaGKSTll~~i~g-l~~p~sG~I~~~g~~i~~~~~~~~~------~~~~r~ig~v~Q~~~L~~~   95 (240)
T d1g2912          25 EVKDGEF--MILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKGIFV------PPKDRDIAMVFQSYALYPH   95 (240)
T ss_dssp             EEETTCE--EEEECSTTSSHHHHHHHHHT-SSCCSEEEEEETTEEEEEGGGTEEC------CGGGSSEEEECSCCCCCTT
T ss_pred             EEcCCCE--EEEECCCCChHHHHHHHHhc-CCCCCCCEEEECCEEecccchhhhc------ccccccceecccchhhcch
Confidence            3445555  89999999999999999998 7789999999988765111000000      0001123343333333322


Q ss_pred             hHHHHHH----------------------HHHHhc-----CCCCCCC------------CCCceEEEEeCC-CCCCHHHH
Q 017844          108 YVVQEVI----------------------KEMAKN-----RPIDTKG------------KRGFKVLVLNEV-DKLSREAQ  147 (365)
Q Consensus       108 ~~~~~~l----------------------~~~~~~-----~~~~~~~------------~~~~~vliiDE~-~~L~~~~~  147 (365)
                      .++.+.+                      +.+.-.     .+..+|+            ..+|+++++||+ ..|++...
T Consensus        96 ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~  175 (240)
T d1g2912          96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR  175 (240)
T ss_dssp             SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred             hhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHH
Confidence            2232222                      221100     1111221            247899999999 78999999


Q ss_pred             HHHHHHHhhhc-C-ceeEEEEecCCCcccHHHhccce
Q 017844          148 HSLRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       148 ~~Ll~~le~~~-~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ..+++.+.+.. . +..+|++|++.+. ...+.+|+.
T Consensus       176 ~~i~~~l~~l~~~~g~tvi~vTHd~~~-~~~~~drv~  211 (240)
T d1g2912         176 VRMRAELKKLQRQLGVTTIYVTHDQVE-AMTMGDRIA  211 (240)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEE
T ss_pred             HHHHHHHHHHHhccCCEEEEEcCCHHH-HHHhCCEEE
Confidence            99999887753 2 5778888887653 234556653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.14  E-value=2.3e-11  Score=102.08  Aligned_cols=142  Identities=13%  Similarity=0.223  Sum_probs=81.4

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhH
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV  109 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (365)
                      ..|..  +.|.||+|+||||+++++++ +..++.|.+.+++.++...+.......      ....+.+..++.......+
T Consensus        29 ~~Ge~--~~iiG~sGsGKSTLl~~i~g-l~~p~sG~I~~~g~~i~~~~~~~~~~~------r~~~ig~v~Q~~~l~~~~t   99 (230)
T d1l2ta_          29 KEGEF--VSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDDDELTKI------RRDKIGFVFQQFNLIPLLT   99 (230)
T ss_dssp             CTTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHH------HHHHEEEECTTCCCCTTSC
T ss_pred             cCCCE--EEEECCCCCCcchhhHhccC-CCCCCcceeEECCEEcCcCChhhcchh------hcceEEEEecchhhCcCcc
Confidence            34554  89999999999999999998 778999999999876511010000000      0001222222211111111


Q ss_pred             H-------------------------HHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CCCCHH
Q 017844          110 V-------------------------QEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKLSRE  145 (365)
Q Consensus       110 ~-------------------------~~~l~~~~------~~~~~~~~~------------~~~~~vliiDE~-~~L~~~  145 (365)
                      +                         .+.++.+.      ...+..+|+            ..+|+++++||+ ..|++.
T Consensus       100 v~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~  179 (230)
T d1l2ta_         100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK  179 (230)
T ss_dssp             HHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred             HHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHH
Confidence            1                         11111111      001111221            247899999999 789999


Q ss_pred             HHHHHHHHHhhhc-C-ceeEEEEecCCCcccHHHhccce
Q 017844          146 AQHSLRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       146 ~~~~Ll~~le~~~-~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ....+++++.+.. . +..+|++|++.+ .. .+.+|+.
T Consensus       180 ~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a-~~~drv~  216 (230)
T d1l2ta_         180 TGEKIMQLLKKLNEEDGKTVVVVTHDIN-VA-RFGERII  216 (230)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECSCHH-HH-TTSSEEE
T ss_pred             HHHHHHHHHHHHHHhhCCEEEEECCCHH-HH-HhCCEEE
Confidence            9999999998863 2 567888887654 22 3455543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.7e-11  Score=103.46  Aligned_cols=143  Identities=17%  Similarity=0.217  Sum_probs=85.3

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (365)
                      +..|..  +.|.||+|+||||+++++++ +..++.|.+.+++.++ .....+  +.  ...  ...+.+.+++.......
T Consensus        28 i~~Ge~--~~iiG~sGsGKSTLl~~i~G-l~~p~sG~I~~~g~~i-~~~~~~--~~--~~~--rr~ig~VfQ~~~l~~~~   97 (240)
T d3dhwc1          28 VPAGQI--YGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQEL-TTLSES--EL--TKA--RRQIGMIFQHFNLLSSR   97 (240)
T ss_dssp             ECSSCE--EEEEESTTSSHHHHHHHHTT-SSCCSEEEEEETTEEE-CTTCHH--HH--HHH--HHHEEECCSSCCCCTTS
T ss_pred             EcCCCE--EEEECCCCCCHHHHHHHHcC-CccccCCceEEcCeEe-eeCChh--hh--hhh--hccccccccccccCCCc
Confidence            344555  89999999999999999998 7789999999988765 111100  00  000  01233333333222222


Q ss_pred             HHH----------------------HHHHHHHhcC-----CCCCCC------------CCCceEEEEeCC-CCCCHHHHH
Q 017844          109 VVQ----------------------EVIKEMAKNR-----PIDTKG------------KRGFKVLVLNEV-DKLSREAQH  148 (365)
Q Consensus       109 ~~~----------------------~~l~~~~~~~-----~~~~~~------------~~~~~vliiDE~-~~L~~~~~~  148 (365)
                      ++.                      +.++.+.-..     +..+|+            ..+|+++++||+ ..|++....
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~  177 (240)
T d3dhwc1          98 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR  177 (240)
T ss_dssp             BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHH
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhh
Confidence            222                      2222221110     111121            237899999998 889999999


Q ss_pred             HHHHHHhhhcC--ceeEEEEecCCCcccHHHhccce
Q 017844          149 SLRRTMEKYSA--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       149 ~Ll~~le~~~~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++.+.+...  +..+|++|++... ...+.+|+.
T Consensus       178 ~i~~~l~~l~~~~g~tvi~vTHdl~~-~~~~~dri~  212 (240)
T d3dhwc1         178 SILELLKDINRRLGLTILLITHEMDV-VKRICDCVA  212 (240)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEBSCHHH-HHHHCSEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEcCCHHH-HHHhCCEEE
Confidence            99999887533  4667777776553 345666753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=1.9e-11  Score=103.64  Aligned_cols=139  Identities=16%  Similarity=0.199  Sum_probs=83.1

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (365)
                      +..|..  +.|.||+|+||||+.+++++ +..|+.|.+.+++.+....+           ......+.+.++........
T Consensus        25 v~~Gei--~glvG~nGaGKSTLl~~l~G-~~~p~~G~i~i~G~~i~~~~-----------~~~~~~i~~vpq~~~~~~~l   90 (238)
T d1vpla_          25 IEEGEI--FGLIGPNGAGKTTTLRIIST-LIKPSSGIVTVFGKNVVEEP-----------HEVRKLISYLPEEAGAYRNM   90 (238)
T ss_dssp             ECTTCE--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEETTTCH-----------HHHHTTEEEECTTCCCCTTS
T ss_pred             EcCCCE--EEEECCCCCCHHHHHHHHhc-CCCCCCCEEEECcEecccCh-----------HHHHhhEeEeeeccccCCCc
Confidence            344555  88999999999999999999 67888898888886541100           00012233444433322222


Q ss_pred             HHHHHH------------------HHHHhcCC---------CCCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844          109 VVQEVI------------------KEMAKNRP---------IDTK------------GKRGFKVLVLNEV-DKLSREAQH  148 (365)
Q Consensus       109 ~~~~~l------------------~~~~~~~~---------~~~~------------~~~~~~vliiDE~-~~L~~~~~~  148 (365)
                      ++.+.+                  +.+.....         -.+|            ...+++++++||+ ..|++....
T Consensus        91 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~  170 (238)
T d1vpla_          91 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR  170 (238)
T ss_dssp             BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHH
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence            222222                  22111100         0111            1357899999998 889999998


Q ss_pred             HHHHHHhhhcC-ceeEEEEecCCCcccHHHhccce
Q 017844          149 SLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       149 ~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+.+++.+... +..+|++|++.+. ...+.+|+.
T Consensus       171 ~i~~~i~~~~~~g~tii~~tH~l~~-~~~~~drv~  204 (238)
T d1vpla_         171 EVRKILKQASQEGLTILVSSHNMLE-VEFLCDRIA  204 (238)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHH-HTTTCSEEE
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEE
Confidence            88998887643 3556666665443 344566654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.11  E-value=2.5e-11  Score=101.65  Aligned_cols=138  Identities=14%  Similarity=0.224  Sum_probs=86.8

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchh
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRY  108 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (365)
                      +..|..  +.|.||+|+||||+++++++ +..++.|.+.+++.++ ......           ...+.+.+++...+...
T Consensus        23 i~~Ge~--~~liGpsGaGKSTll~~l~G-l~~p~sG~I~~~G~~i-~~~~~~-----------~r~ig~v~Q~~~l~~~~   87 (229)
T d3d31a2          23 VESGEY--FVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDV-TDLSPE-----------KHDIAFVYQNYSLFPHM   87 (229)
T ss_dssp             ECTTCE--EEEECCCTHHHHHHHHHHHT-SSCCSEEEEEETTEEC-TTSCHH-----------HHTCEEECTTCCCCTTS
T ss_pred             ECCCCE--EEEECCCCCcHHHHHHHHhc-CcCCCCCEEEEccEec-cccchh-----------HhcceeeccccccCccc
Confidence            344555  89999999999999999999 7789999999998765 111000           11234444443333333


Q ss_pred             HHHHHHHHHHhc---------------CCC---------CCC------------CCCCceEEEEeCC-CCCCHHHHHHHH
Q 017844          109 VVQEVIKEMAKN---------------RPI---------DTK------------GKRGFKVLVLNEV-DKLSREAQHSLR  151 (365)
Q Consensus       109 ~~~~~l~~~~~~---------------~~~---------~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll  151 (365)
                      ++.+.+......               ..+         .+|            ...+++++++||+ ..|++.....+.
T Consensus        88 tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~  167 (229)
T d3d31a2          88 NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR  167 (229)
T ss_dssp             CHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHH
T ss_pred             cHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHH
Confidence            333333221111               000         111            2357899999998 789999999888


Q ss_pred             HHHhhhc--CceeEEEEecCCCcccHHHhccce
Q 017844          152 RTMEKYS--ASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       152 ~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      +.+.+..  .+..+|++|++.+.. ..+.+|+.
T Consensus       168 ~~l~~l~~~~g~tii~vtHd~~~~-~~~~drv~  199 (229)
T d3d31a2         168 EMLSVLHKKNKLTVLHITHDQTEA-RIMADRIA  199 (229)
T ss_dssp             HHHHHHHHHTTCEEEEEESCHHHH-HHHCSEEE
T ss_pred             HHHHHHHhcCCcEEEEEcCCHHHH-HHhCCEEE
Confidence            8887752  356788888876532 34556653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.10  E-value=1.4e-12  Score=117.89  Aligned_cols=72  Identities=17%  Similarity=-0.036  Sum_probs=45.8

Q ss_pred             eEEEEecCCC-cccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHcCCCHHHHHHHHH
Q 017844          162 RLILCCNSSS-KVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLA-EKSNRSLRRAILSFE  233 (365)
Q Consensus       162 ~~Il~t~~~~-~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~~i~~~~~~~i~-~~~~g~lr~ai~~l~  233 (365)
                      .+|++||+.. .+..+.+.++.++.+.++.......++..++.++.+..+.+.+..+. ..+++|++.+++.+.
T Consensus       258 p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~D~~~~i~~~~  331 (362)
T d1svma_         258 PGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRI  331 (362)
T ss_dssp             CEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHH
T ss_pred             CceeecccccccccccccCceEEeecCCCcHHHHHHHHHHHhcccCCCCCHHHHHHHccCCCHHHHHHHHHHHH
Confidence            4888888654 23333344444444555555566677888888888888777765544 556667877766553

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.09  E-value=3.1e-11  Score=102.46  Aligned_cols=152  Identities=10%  Similarity=0.077  Sum_probs=84.2

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCccee--c--c------ccccccccceec
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNID--L--E------LTTLSSANHVEL   97 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~--~--~------~~~~~~~~~~~~   97 (365)
                      .+..|..  +.|.||+|+||||+++++++ +..++.+.+.+++.++...+......  +  .      +..++..+.+.+
T Consensus        28 ~i~~Gei--~~liGpnGaGKSTl~~~i~G-l~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~  104 (240)
T d1ji0a_          28 KVPRGQI--VTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMM  104 (240)
T ss_dssp             EEETTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHG
T ss_pred             EECCCCE--EEEECCCCCcHHHHHHHHhC-CCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHH
Confidence            3445655  89999999999999999999 67889999999887652111110000  0  0      000000000111


Q ss_pred             CCCCcCccc--hhHHHHHHHH---HHhc---CCCCCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhh
Q 017844           98 SPSDAGFQD--RYVVQEVIKE---MAKN---RPIDTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEK  156 (365)
Q Consensus        98 ~~~~~~~~~--~~~~~~~l~~---~~~~---~~~~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~  156 (365)
                      .........  ...+...+..   +...   .+..+|            ...+++++++||+ ..|++.....+.+++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~  184 (240)
T d1ji0a_         105 GAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK  184 (240)
T ss_dssp             GGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHH
Confidence            110000000  0011122211   1111   111122            1347899999998 88999999999999987


Q ss_pred             hcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          157 YSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       157 ~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ... +..+|+++++.+.. ..+.+|+.+
T Consensus       185 l~~~g~til~~tH~l~~~-~~~~drv~v  211 (240)
T d1ji0a_         185 INQEGTTILLVEQNALGA-LKVAHYGYV  211 (240)
T ss_dssp             HHHTTCCEEEEESCHHHH-HHHCSEEEE
T ss_pred             HHhCCCEEEEEeCCHHHH-HHhCCEEEE
Confidence            643 45677777765543 456677643

>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=2e-10  Score=81.52  Aligned_cols=77  Identities=26%  Similarity=0.519  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHhhhhhHHH
Q 017844          251 MDWEEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELL--KRLDAEIKHEVCHWAAYYVSISFQI  327 (365)
Q Consensus       251 ~~~~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~  327 (365)
                      +||+..+.++++.|..+++++++.++|+++|+|+.++++|+.|+..+...|+  .+.+...+.++..+++.|+||+.+.
T Consensus         2 pdWe~~i~~ia~~I~~eqsp~~L~~iR~~lYeLL~~cIpp~~Ilk~L~~~Ll~~~~~d~~lk~eii~~aa~yE~Rl~~G   80 (99)
T d1sxje1           2 PDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLG   80 (99)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHCC
Confidence            6899999999999999999999999999999999999999999999999997  4577889999999999999998753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.06  E-value=8.1e-11  Score=97.23  Aligned_cols=42  Identities=21%  Similarity=0.373  Sum_probs=35.6

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      ++.|..  +.|.||+|+||||+++++++ +..|..|.+.+++.++
T Consensus        24 i~~Gei--~~l~G~NGsGKSTLl~~i~g-l~~p~~G~I~~~g~~i   65 (200)
T d1sgwa_          24 IEKGNV--VNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYNGVPI   65 (200)
T ss_dssp             EETTCC--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEEG
T ss_pred             EcCCCE--EEEECCCCChHHHHHHHHhc-ccccCCCEEEECCEeh
Confidence            345665  89999999999999999998 6788999998888654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.06  E-value=2.8e-11  Score=102.09  Aligned_cols=143  Identities=15%  Similarity=0.213  Sum_probs=83.5

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccch-
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDR-  107 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  107 (365)
                      ++.|..  +.|.||+|+||||+++++++ +..++.|.+.+++.++...+... .      ......+.+..++...++. 
T Consensus        28 i~~Ge~--~~iiG~sGsGKSTll~~i~g-l~~p~~G~I~~~g~~i~~~~~~~-~------~~~rr~ig~vfQ~~~L~p~l   97 (242)
T d1oxxk2          28 IENGER--FGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLI-V------PPEDRKIGMVFQTWALYPNL   97 (242)
T ss_dssp             ECTTCE--EEEECSCHHHHHHHHHHHHT-SSCCSEEEEEETTEEEEETTEES-S------CGGGSCEEEEETTSCCCTTS
T ss_pred             ECCCCE--EEEECCCCCcHHHHHHHHHc-CcCCCCceEEECCEEeecCchhh-c------chhhccceEEeccccccccc
Confidence            344554  89999999999999999999 77899999999987662111000 0      0000112222222211111 


Q ss_pred             -----------------hHHHHHHHHHHhcCCC---------CCC------------CCCCceEEEEeCC-CCCCHHHHH
Q 017844          108 -----------------YVVQEVIKEMAKNRPI---------DTK------------GKRGFKVLVLNEV-DKLSREAQH  148 (365)
Q Consensus       108 -----------------~~~~~~l~~~~~~~~~---------~~~------------~~~~~~vliiDE~-~~L~~~~~~  148 (365)
                                       ...++...++.....+         .+|            ...+++++++||+ ..|++....
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~  177 (242)
T d1oxxk2          98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD  177 (242)
T ss_dssp             CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred             cHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHH
Confidence                             1122222222211111         111            1247899999998 789998888


Q ss_pred             HHHHHHhhhc-C-ceeEEEEecCCCcccHHHhccce
Q 017844          149 SLRRTMEKYS-A-SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       149 ~Ll~~le~~~-~-~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+.+.+.+.. . +..+|++|++.+. ...+.+|+.
T Consensus       178 ~i~~~i~~l~~~~g~tvi~vTHd~~~-~~~~~dri~  212 (242)
T d1oxxk2         178 SARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVG  212 (242)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEESCHHH-HHHHCSEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEECCHHH-HHHhCCEEE
Confidence            8888887752 2 5667778777553 234556654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.05  E-value=5.6e-10  Score=98.03  Aligned_cols=126  Identities=19%  Similarity=0.225  Sum_probs=74.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYVVQEVIKE  116 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (365)
                      ++++||||||||.+|+++|.++.... ..+.+.+..+                     +.    .+.......++++++.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~-~~~~~~~~~~---------------------~~----~~~G~~e~~~~~~f~~  179 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKD-KYATVRFGEP---------------------LS----GYNTDFNVFVDDIARA  179 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTS-CCEEEEBSCS---------------------ST----TCBCCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCC-CeEEEEhhHh---------------------hh----cccchHHHHHHHHHHH
Confidence            67799999999999999999874322 1122222111                     11    1112222346666665


Q ss_pred             HHhcCCCCCCCCCCceEEEEeCCCCCCHH------------HHHHHHHHHhhh--cCceeEEEEecCCCcccHHHh----
Q 017844          117 MAKNRPIDTKGKRGFKVLVLNEVDKLSRE------------AQHSLRRTMEKY--SASCRLILCCNSSSKVTEAIR----  178 (365)
Q Consensus       117 ~~~~~~~~~~~~~~~~vliiDE~~~L~~~------------~~~~Ll~~le~~--~~~~~~Il~t~~~~~l~~~l~----  178 (365)
                      ...           +.|+||||+|.+...            ..+.|+..|+..  ..++.+|.+|| +..+++++.    
T Consensus       180 a~~-----------~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN-~~~~~~~i~~~~~  247 (321)
T d1w44a_         180 MLQ-----------HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKIVELVK  247 (321)
T ss_dssp             HHH-----------CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CCCCCHHHHHHHH
T ss_pred             Hhh-----------ccEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCC-Ccccccchhhhhh
Confidence            432           259999999988432            334566666533  23455555555 655555554    


Q ss_pred             --ccc-eeEEecCCCHHHHHHHHHH
Q 017844          179 --SRC-LNIRINSPTEEQIVKVLEF  200 (365)
Q Consensus       179 --sR~-~~i~~~~~~~~~~~~iL~~  200 (365)
                        .|+ ..+.+.+|+.+...++|..
T Consensus       248 r~~Rf~~~v~v~~pd~~~r~~il~~  272 (321)
T d1w44a_         248 EASRSNSTSLVISTDVDGEWQVLTR  272 (321)
T ss_dssp             HHHHHSCSEEEEECSSTTEEEEEEE
T ss_pred             ccCcccceeecCCCChHHHHHHHHH
Confidence              344 4788888888777666653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.03  E-value=7.7e-11  Score=99.11  Aligned_cols=132  Identities=13%  Similarity=0.205  Sum_probs=82.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCccchhH-------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQDRYV-------  109 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  109 (365)
                      +.|.||+|+||||+++++++ +..|+.|.+.+++.++...+..            ...+.+.+++....+..+       
T Consensus        27 ~~liGpnGaGKSTll~~i~G-l~~p~~G~I~~~G~~i~~~~~~------------~r~ig~v~Q~~~l~~~ltV~enl~~   93 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAG-IVKPDRGEVRLNGADITPLPPE------------RRGIGFVPQDYALFPHLSVYRNIAY   93 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHT-SSCCSEEEEEETTEECTTSCTT------------TSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred             EEEECCCCChHHHHHHHHHc-CCCCCceEEEECCEECCcCCHH------------HcCceeeccchhhcccchhhHhhhh
Confidence            67899999999999999999 7789999999998766211111            111223332222221111       


Q ss_pred             ---------HHHHHHHHHhcCCC---------CCC------------CCCCceEEEEeCC-CCCCHHHHHHHHHHHhhhc
Q 017844          110 ---------VQEVIKEMAKNRPI---------DTK------------GKRGFKVLVLNEV-DKLSREAQHSLRRTMEKYS  158 (365)
Q Consensus       110 ---------~~~~l~~~~~~~~~---------~~~------------~~~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~  158 (365)
                               ..+.+.++.....+         .+|            ...+++++++||+ ..|++.....+++.+.+..
T Consensus        94 ~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~  173 (240)
T d2onka1          94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ  173 (240)
T ss_dssp             TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHH
T ss_pred             hhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHH
Confidence                     12222222222111         111            1347899999998 7899999999999887753


Q ss_pred             C--ceeEEEEecCCCcccHHHhccce
Q 017844          159 A--SCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       159 ~--~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .  +..+|++|++.+.. ..+.+|+.
T Consensus       174 ~~~g~tvi~vtHd~~~~-~~~adri~  198 (240)
T d2onka1         174 REFDVPILHVTHDLIEA-AMLADEVA  198 (240)
T ss_dssp             HHHTCCEEEEESCHHHH-HHHCSEEE
T ss_pred             HhcCCeEEEEeCCHHHH-HHhCCEEE
Confidence            2  56788888776543 45566664

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=7.4e-11  Score=100.00  Aligned_cols=138  Identities=21%  Similarity=0.234  Sum_probs=82.0

Q ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCcc----
Q 017844           30 TEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGFQ----  105 (365)
Q Consensus        30 ~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  105 (365)
                      ..|..  +.|.||+|+||||+++++++ +..+..|.+.+++.++. .....       .+  ...+.+.+++....    
T Consensus        27 ~~Ge~--vaIvG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~-~~~~~-------~l--r~~i~~v~Q~~~lf~~Ti   93 (241)
T d2pmka1          27 KQGEV--IGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLA-LADPN-------WL--RRQVGVVLQDNVLLNRSI   93 (241)
T ss_dssp             ETTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEETT-TSCHH-------HH--HHHEEEECSSCCCTTSBH
T ss_pred             cCCCE--EEEECCCCCCHHHHHHHHHh-cCCCCCCEEEECCEEec-ccchh-------hh--hceEEEEecccccCCccc
Confidence            34444  89999999999999999999 67888899999886551 10000       00  01122222221111    


Q ss_pred             -----------chhHHHHHHHHH-----HhcCC-----------CCCC------------CCCCceEEEEeCC-CCCCHH
Q 017844          106 -----------DRYVVQEVIKEM-----AKNRP-----------IDTK------------GKRGFKVLVLNEV-DKLSRE  145 (365)
Q Consensus       106 -----------~~~~~~~~l~~~-----~~~~~-----------~~~~------------~~~~~~vliiDE~-~~L~~~  145 (365)
                                 ....+....+..     ....+           ..+|            ...+++|+|+||+ ..|++.
T Consensus        94 ~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~  173 (241)
T d2pmka1          94 IDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE  173 (241)
T ss_dssp             HHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHH
T ss_pred             cccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHH
Confidence                       111111111110     00000           0111            1247899999999 789999


Q ss_pred             HHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          146 AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       146 ~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      ....+++.+.+...+..+|++|++.+.+ . ..+|+.
T Consensus       174 ~~~~i~~~l~~l~~~~Tvi~itH~l~~~-~-~~D~i~  208 (241)
T d2pmka1         174 SEHVIMRNMHKICKGRTVIIIAHRLSTV-K-NADRII  208 (241)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEECSSGGGG-T-TSSEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEEECCHHHH-H-hCCEEE
Confidence            9999999998877677888888887643 2 245553

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.98  E-value=2.4e-10  Score=97.86  Aligned_cols=53  Identities=9%  Similarity=0.097  Sum_probs=40.1

Q ss_pred             CCceEEEEeCC-CCCCHHHHHHHHHHHhhhc-CceeEEEEecCCCcccHHHhccce
Q 017844          129 RGFKVLVLNEV-DKLSREAQHSLRRTMEKYS-ASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       129 ~~~~vliiDE~-~~L~~~~~~~Ll~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      .+++++|+||+ ..|++.....+++.+.+.. .+..+|+++++.+.+ ..+.+|+.
T Consensus       167 ~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~-~~~~Drv~  221 (254)
T d1g6ha_         167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV-LNYIDHLY  221 (254)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT-GGGCSEEE
T ss_pred             hCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH-HHhCCEEE
Confidence            47899999998 7899999988888887763 346677777776644 45667764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.98  E-value=2.2e-10  Score=98.00  Aligned_cols=152  Identities=13%  Similarity=0.196  Sum_probs=84.2

Q ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCc-ceeccc--cccccccceecCCCCcCc
Q 017844           28 LVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSR-NIDLEL--TTLSSANHVELSPSDAGF  104 (365)
Q Consensus        28 ~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~  104 (365)
                      .+..|..  +.|.||+|+||||+++++++ +..++.|.+.+++.++...+... ......  ........+.+..++...
T Consensus        24 ~i~~GEi--~~iiG~sGsGKSTLl~~i~G-l~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l  100 (258)
T d1b0ua_          24 QARAGDV--ISIIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL  100 (258)
T ss_dssp             EECTTCE--EEEECCTTSSHHHHHHHHTT-SSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred             EEcCCCE--EEEECCCCCcHHHHHHHHHc-CccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhh
Confidence            3445555  89999999999999999998 77888999999887652111100 000000  000000112222222111


Q ss_pred             cchhH-----------------------HHHHHHHHH------hcCCCCCCC------------CCCceEEEEeCC-CCC
Q 017844          105 QDRYV-----------------------VQEVIKEMA------KNRPIDTKG------------KRGFKVLVLNEV-DKL  142 (365)
Q Consensus       105 ~~~~~-----------------------~~~~l~~~~------~~~~~~~~~------------~~~~~vliiDE~-~~L  142 (365)
                      ....+                       +.+.++.+.      ...+..+|+            ..+++++|+||+ -.|
T Consensus       101 ~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gL  180 (258)
T d1b0ua_         101 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL  180 (258)
T ss_dssp             CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred             ccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccC
Confidence            11111                       112221110      111112221            237899999999 789


Q ss_pred             CHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhcccee
Q 017844          143 SREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       143 ~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      ++..+..+++.|.+... +..+|++|++.+ ....+.+|+.+
T Consensus       181 D~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~v  221 (258)
T d1b0ua_         181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIF  221 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEE
T ss_pred             CHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEE
Confidence            99999988888877543 355777776654 33566777643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=6.1e-10  Score=94.98  Aligned_cols=42  Identities=24%  Similarity=0.464  Sum_probs=35.4

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccc
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTW   73 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~   73 (365)
                      +..|..  +.|.||+|+||||+++++++ +..|..|.+.+++.+.
T Consensus        37 i~~Ge~--vaivG~sGsGKSTLl~li~g-l~~p~~G~I~i~g~~i   78 (251)
T d1jj7a_          37 LRPGEV--TALVGPNGSGKSTVAALLQN-LYQPTGGQLLLDGKPL   78 (251)
T ss_dssp             ECTTCE--EEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETTEEG
T ss_pred             EcCCCE--EEEECCCCCcHHHHHHHHhc-ccCCCcCEEEECCEec
Confidence            344544  89999999999999999998 7788889999988755

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.87  E-value=3.8e-10  Score=96.42  Aligned_cols=139  Identities=16%  Similarity=0.258  Sum_probs=81.0

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc------
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA------  102 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  102 (365)
                      +..|..  +.|.||+|+||||+++++++ +..+..+.+.+++.++...+....          ...+.+.+++.      
T Consensus        38 i~~Ge~--iaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~~----------r~~i~~v~Q~~~l~~~t  104 (253)
T d3b60a1          38 IPAGKT--VALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLREYTLASL----------RNQVALVSQNVHLFNDT  104 (253)
T ss_dssp             ECTTCE--EEEEECTTSSHHHHHHHHTT-TTCCSEEEEEETTEETTTBCHHHH----------HHTEEEECSSCCCCSSB
T ss_pred             EcCCCE--EEEECCCCChHHHHHHHHhc-ccCCCccEEEECCcccchhhhhhh----------hheEEEEeeccccCCcc
Confidence            334444  89999999999999999998 778888999998865411000000          00011111110      


Q ss_pred             ----------CccchhHHHHHHH------HHHhcC----------CCCCCC------------CCCceEEEEeCC-CCCC
Q 017844          103 ----------GFQDRYVVQEVIK------EMAKNR----------PIDTKG------------KRGFKVLVLNEV-DKLS  143 (365)
Q Consensus       103 ----------~~~~~~~~~~~l~------~~~~~~----------~~~~~~------------~~~~~vliiDE~-~~L~  143 (365)
                                .......+.+.++      .+....          +..+|+            ..+++|+|+||+ ..|+
T Consensus       105 i~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD  184 (253)
T d3b60a1         105 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD  184 (253)
T ss_dssp             HHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCC
T ss_pred             hhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCC
Confidence                      0111111211111      111100          001121            126789999999 8899


Q ss_pred             HHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccce
Q 017844          144 REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCL  182 (365)
Q Consensus       144 ~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~  182 (365)
                      +.....+++.|.+...+..+|++|++...+ . ..+|+.
T Consensus       185 ~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~-~-~~D~v~  221 (253)
T d3b60a1         185 TESERAIQAALDELQKNRTSLVIAHRLSTI-E-QADEIV  221 (253)
T ss_dssp             HHHHHHHHHHHHHHHTTSEEEEECSCGGGT-T-TCSEEE
T ss_pred             HHHHHHHHHHHHHhccCCEEEEEECCHHHH-H-hCCEEE
Confidence            999999999998877677888888876533 2 345543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.86  E-value=2.3e-10  Score=97.09  Aligned_cols=134  Identities=16%  Similarity=0.257  Sum_probs=78.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcC-------------
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAG-------------  103 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  103 (365)
                      +.|.||+|+||||+++++++ +..|..|.+.+++.++...+....          ...+.+.+++..             
T Consensus        31 vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~~----------r~~i~~v~Q~~~lf~~ti~eNi~~~   99 (242)
T d1mv5a_          31 IAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPIDNISLENW----------RSQIGFVSQDSAIMAGTIRENLTYG   99 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHTT-SSCCSBSCEEETTEESTTTSCSCC----------TTTCCEECCSSCCCCEEHHHHTTSC
T ss_pred             EEEECCCCCCHHHHHHHHHH-hhCCCCCEEEECCEEeccccHHHH----------HhheEEEccccccCCcchhhheecc
Confidence            89999999999999999998 778899999999876511111000          011222222111             


Q ss_pred             ---ccchhHHHHHHHHHHhcCCC----------------CCCC------------CCCceEEEEeCC-CCCCHHHHHHHH
Q 017844          104 ---FQDRYVVQEVIKEMAKNRPI----------------DTKG------------KRGFKVLVLNEV-DKLSREAQHSLR  151 (365)
Q Consensus       104 ---~~~~~~~~~~l~~~~~~~~~----------------~~~~------------~~~~~vliiDE~-~~L~~~~~~~Ll  151 (365)
                         ......+.+..+........                .+|+            ..+++|+++||+ ..|+......++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~  179 (242)
T d1mv5a_         100 LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ  179 (242)
T ss_dssp             TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHH
T ss_pred             cccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHH
Confidence               11111122222221111000                1111            127789999999 778887777788


Q ss_pred             HHHhhhcCceeEEEEecCCCcccHHHhcccee
Q 017844          152 RTMEKYSASCRLILCCNSSSKVTEAIRSRCLN  183 (365)
Q Consensus       152 ~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~  183 (365)
                      +.+.+...+..+|++|++.+.+ . ..+|+.+
T Consensus       180 ~~l~~l~~~~Tvi~itH~l~~~-~-~~D~i~v  209 (242)
T d1mv5a_         180 KALDSLMKGRTTLVIAHRLSTI-V-DADKIYF  209 (242)
T ss_dssp             HHHHHHHTTSEEEEECCSHHHH-H-HCSEEEE
T ss_pred             HHHHHHcCCCEEEEEECCHHHH-H-hCCEEEE
Confidence            8887766677788888776533 2 2455543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.84  E-value=3.2e-10  Score=96.77  Aligned_cols=138  Identities=20%  Similarity=0.278  Sum_probs=81.4

Q ss_pred             HHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCcCc----
Q 017844           29 VTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDAGF----  104 (365)
Q Consensus        29 l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  104 (365)
                      +..|..  +.|.||+|+||||+++.+++ +..+..|.+.+++.+....+...        +  ...+.+.+++...    
T Consensus        41 i~~Ge~--vaivG~sGsGKSTLl~ll~g-l~~p~~G~I~i~g~~i~~~~~~~--------l--r~~i~~v~Q~~~lf~~T  107 (255)
T d2hyda1          41 IEKGET--VAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIKDFLTGS--------L--RNQIGLVQQDNILFSDT  107 (255)
T ss_dssp             ECTTCE--EEEECSTTSSHHHHHTTTTT-SSCCSEEEEEETTEEGGGSCHHH--------H--HHTEEEECSSCCCCSSB
T ss_pred             EcCCCE--EEEECCCCCcHHHHHHHHHh-cCCccccccccCCEEcccCCHHH--------h--hheeeeeeccccCCCCC
Confidence            344544  89999999999999999998 77888899988886551100000        0  0111111111100    


Q ss_pred             -----------cchhHHHHHHHHH-----HhcCCC-----------CCCC------------CCCceEEEEeCC-CCCCH
Q 017844          105 -----------QDRYVVQEVIKEM-----AKNRPI-----------DTKG------------KRGFKVLVLNEV-DKLSR  144 (365)
Q Consensus       105 -----------~~~~~~~~~l~~~-----~~~~~~-----------~~~~------------~~~~~vliiDE~-~~L~~  144 (365)
                                 .....+.+.++..     ....+.           .+|+            ..+++|+|+||+ ..|++
T Consensus       108 i~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~  187 (255)
T d2hyda1         108 VKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL  187 (255)
T ss_dssp             HHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCH
T ss_pred             HHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence                       1111122221111     011010           1111            137789999999 88999


Q ss_pred             HHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccc
Q 017844          145 EAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (365)
Q Consensus       145 ~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~  181 (365)
                      .....+++.+.+...+..+|++|++...+ . ..+|+
T Consensus       188 ~t~~~i~~~l~~l~~~~TvI~itH~~~~~-~-~~D~i  222 (255)
T d2hyda1         188 ESESIIQEALDVLSKDRTTLIVAHRLSTI-T-HADKI  222 (255)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEECSSGGGT-T-TCSEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHH-H-hCCEE
Confidence            99999999998876677788888876643 2 24554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.81  E-value=3.2e-08  Score=91.11  Aligned_cols=104  Identities=16%  Similarity=0.275  Sum_probs=68.0

Q ss_pred             eEEEEeCCCCCC------------HHHHHHHHHHHhhhc----------CceeEEEEecC----CCcccHHHhccc-eeE
Q 017844          132 KVLVLNEVDKLS------------REAQHSLRRTMEKYS----------ASCRLILCCNS----SSKVTEAIRSRC-LNI  184 (365)
Q Consensus       132 ~vliiDE~~~L~------------~~~~~~Ll~~le~~~----------~~~~~Il~t~~----~~~l~~~l~sR~-~~i  184 (365)
                      .++++||++...            ...+..++..++...          .+..+|..+..    +..+.|.+.-|+ .++
T Consensus       251 ~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v  330 (443)
T d1g41a_         251 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV  330 (443)
T ss_dssp             CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred             CccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEE
Confidence            478899887542            234556677766421          12223333222    225889999998 489


Q ss_pred             EecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHcC--------CCHHHHHHHHHHH
Q 017844          185 RINSPTEEQIVKVLEF-----------IAKKEGL--QLPSGFATRLAEKSN--------RSLRRAILSFETC  235 (365)
Q Consensus       185 ~~~~~~~~~~~~iL~~-----------~~~~~~~--~i~~~~~~~i~~~~~--------g~lr~ai~~l~~~  235 (365)
                      .|.+++.+++.++|..           .+..+|+  .++++++..||+.+-        -..|.+...++.+
T Consensus       331 ~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~  402 (443)
T d1g41a_         331 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERL  402 (443)
T ss_dssp             ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred             EccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHH
Confidence            9999999999999853           2223566  468999999988652        2567766666655

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.76  E-value=6.6e-08  Score=83.80  Aligned_cols=193  Identities=16%  Similarity=0.193  Sum_probs=99.1

Q ss_pred             ccccCHHHHHHHHHHHHc-C--CCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcc--eeccccc
Q 017844           14 QVIVHQDIAQNLKKLVTE-Q--DCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRN--IDLELTT   88 (365)
Q Consensus        14 ~iig~~~~~~~l~~~l~~-~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~   88 (365)
                      +++|.+..++.+..++.. .  ....+.|+|+.|+||||+|+.+++......  ...+++..| .+..+..  .......
T Consensus        21 ~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~--~~~f~~~~W-v~vs~~~~~~~l~~~~   97 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLI--GINYDSIVW-LKDSGTAPKSTFDLFT   97 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTB--TTTBSEEEE-EECCCCSTTHHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhh--hhcCceEEE-EEecCCCCHHHHHHHH
Confidence            367899888888888754 2  222388999999999999999887531110  001112112 0000000  0000000


Q ss_pred             ---c--ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeE
Q 017844           89 ---L--SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRL  163 (365)
Q Consensus        89 ---~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~  163 (365)
                         .  .......-.+..............+....         ..++-++|+|++..  .....    .+..  ...++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L---------~~kr~LlVLDDv~~--~~~~~----~~~~--~~sri  160 (277)
T d2a5yb3          98 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALI---------DRPNTLFVFDDVVQ--EETIR----WAQE--LRLRC  160 (277)
T ss_dssp             HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHT---------TSTTEEEEEEEECC--HHHHH----HHHH--TTCEE
T ss_pred             HHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHh---------ccCCeeEecchhhH--Hhhhh----hhcc--cCceE
Confidence               0  00000000000001011000111111111         23457999999963  32222    2222  24566


Q ss_pred             EEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Q 017844          164 ILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL-QLPSGFATRLAEKSNRSLRR  227 (365)
Q Consensus       164 Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~-~i~~~~~~~i~~~~~g~lr~  227 (365)
                      |+||.+. .+...+.+++..+.+++++.++..+.+...+..... .-.++....|++.++|.+-.
T Consensus       161 lvTTR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLA  224 (277)
T d2a5yb3         161 LVTTRDV-EISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPAT  224 (277)
T ss_dssp             EEEESBG-GGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHH
T ss_pred             EEEeehH-HHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHH
Confidence            6666654 455555667778999999999999998764322211 11256678899999998743

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.75  E-value=2.9e-08  Score=79.84  Aligned_cols=62  Identities=16%  Similarity=0.299  Sum_probs=37.0

Q ss_pred             CCceEEEEeCCCCC---CHHHHHHHHHHHhhhcCceeEEEEecCCC--cccHHHhccc--eeEEecCCCHH
Q 017844          129 RGFKVLVLNEVDKL---SREAQHSLRRTMEKYSASCRLILCCNSSS--KVTEAIRSRC--LNIRINSPTEE  192 (365)
Q Consensus       129 ~~~~vliiDE~~~L---~~~~~~~Ll~~le~~~~~~~~Il~t~~~~--~l~~~l~sR~--~~i~~~~~~~~  192 (365)
                      .+++++++||++..   .......+.+.+++.  ...+|++++...  .+...+..+.  ..+.+...+.+
T Consensus        98 ~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~--~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~nrd  166 (178)
T d1ye8a1          98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRD  166 (178)
T ss_dssp             CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTT
T ss_pred             cCCCceeecCCCccchhhHHHHHHHHHHhccC--CCEEEEEEccHHHHHhhceEEEEeCCEEEEECCccHH
Confidence            45689999998654   455667777877754  345666655443  2333444433  46666655433

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=1.2e-08  Score=85.89  Aligned_cols=54  Identities=15%  Similarity=0.218  Sum_probs=38.1

Q ss_pred             CceEEEEeCC-CCCCHHHHHHHHHHHhhhcC-ceeEEEEecCCCcccHHHhccceeE
Q 017844          130 GFKVLVLNEV-DKLSREAQHSLRRTMEKYSA-SCRLILCCNSSSKVTEAIRSRCLNI  184 (365)
Q Consensus       130 ~~~vliiDE~-~~L~~~~~~~Ll~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~~~i  184 (365)
                      +++++++||+ ..|++..+..+.+++.+... +..+|+++++.+ ....+.+|+.++
T Consensus       150 ~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl  205 (231)
T d1l7vc_         150 AGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLL  205 (231)
T ss_dssp             TCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEE
Confidence            5589999998 88999999999998887643 445555555433 345566776443

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=1.4e-07  Score=81.46  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=29.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      +.|.||+|+||||+++++++ +..++.|.+.++++
T Consensus        65 vaivG~nGsGKSTLl~~i~G-l~~p~~G~I~~~g~   98 (281)
T d1r0wa_          65 LAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGR   98 (281)
T ss_dssp             EEEEESTTSSHHHHHHHHHT-SSCCSEEEEECCSC
T ss_pred             EEEECCCCChHHHHHHHHhC-CCcCCCcEEEECCE
Confidence            88999999999999999999 66788887777764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=98.29  E-value=1.2e-06  Score=70.49  Aligned_cols=38  Identities=24%  Similarity=0.453  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHh
Q 017844           21 IAQNLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        21 ~~~~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .+..++.++++..-.+ ++|+||++||||+++.++++.+
T Consensus        39 Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          39 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            3466777775543344 9999999999999999999865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.9e-06  Score=69.02  Aligned_cols=28  Identities=39%  Similarity=0.674  Sum_probs=24.3

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      .|++|+||||+||||+++.+++.+....
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~   29 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            3599999999999999999999886543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.26  E-value=2.9e-07  Score=79.05  Aligned_cols=50  Identities=28%  Similarity=0.540  Sum_probs=34.8

Q ss_pred             CCCccccCHHHHHHHHHHHHc---CCCCe-EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           11 TLDQVIVHQDIAQNLKKLVTE---QDCPH-LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        11 ~~~~iig~~~~~~~l~~~l~~---~~~~~-lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +|++.-+++.....+......   ...|. ++|+|||||||||+|+++|+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_           5 NFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             ccChHHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            345544555555555555432   34444 999999999999999999998743

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=98.05  E-value=3e-05  Score=70.17  Aligned_cols=129  Identities=17%  Similarity=0.275  Sum_probs=73.7

Q ss_pred             CCCCccccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceecccccc
Q 017844           10 KTLDQVIVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTL   89 (365)
Q Consensus        10 ~~~~~iig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (365)
                      .+++++--.+.....++.++.... .-++|+||.|+||||++.++..++..+....+.++      +|-....       
T Consensus       135 ~~l~~LG~~~~~~~~l~~l~~~~~-GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE------dPiE~~~-------  200 (401)
T d1p9ra_         135 LDLHSLGMTAHNHDNFRRLIKRPH-GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE------DPIEFDI-------  200 (401)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHTSSS-EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE------SSCCSCC-------
T ss_pred             hhhhhhcccHHHHHHHHHHHhhhh-ceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec------cCccccc-------
Confidence            467777777888888888874432 23999999999999999999998865433323222      1111000       


Q ss_pred             ccccceecCCCCcCccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844           90 SSANHVELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~  169 (365)
                      .......+.....     ....+.++.+..         ..++|++|.|+-  +.+.....++.-.    ...+|++|-|
T Consensus       201 ~~~~q~~v~~~~~-----~~~~~~l~~~lR---------~dPDvi~igEiR--d~~ta~~a~~aa~----tGhlV~tTlH  260 (401)
T d1p9ra_         201 DGIGQTQVNPRVD-----MTFARGLRAILR---------QDPDVVMVGEIR--DLETAQIAVQASL----TGHLVMSTLH  260 (401)
T ss_dssp             SSSEEEECBGGGT-----BCHHHHHHHHGG---------GCCSEEEESCCC--SHHHHHHHHHHHH----TTCEEEEEEC
T ss_pred             CCCCeeeecCCcC-----CCHHHHHHHHHh---------hcCCEEEecCcC--ChHHHHHHHHHHh----cCCeEEEEec
Confidence            0000011111111     123345554443         356899999996  3444444444333    4567777666


Q ss_pred             CCc
Q 017844          170 SSK  172 (365)
Q Consensus       170 ~~~  172 (365)
                      ...
T Consensus       261 a~~  263 (401)
T d1p9ra_         261 TNT  263 (401)
T ss_dssp             CSS
T ss_pred             cCc
Confidence            654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.05  E-value=1.6e-05  Score=61.33  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++++||||+||||+|+.++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999988764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.3e-05  Score=71.28  Aligned_cols=39  Identities=18%  Similarity=0.260  Sum_probs=28.5

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ..+++||||+.+++......++.   ..+.+.++|++.+...
T Consensus       261 ~~d~lIIDEaSmv~~~l~~~ll~---~~~~~~~lILvGD~~Q  299 (359)
T d1w36d1         261 HLDVLVVDEASMIDLPMMSRLID---ALPDHARVIFLGDRDQ  299 (359)
T ss_dssp             SCSEEEECSGGGCBHHHHHHHHH---TCCTTCEEEEEECTTS
T ss_pred             ccceeeehhhhccCHHHHHHHHH---HhcCCCEEEEECChhh
Confidence            46899999999998765554444   4455788999887544

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=4.6e-05  Score=61.24  Aligned_cols=38  Identities=26%  Similarity=0.304  Sum_probs=27.8

Q ss_pred             HHHHHHcCCCCe----EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           25 LKKLVTEQDCPH----LLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        25 l~~~l~~~~~~~----lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      .+..+.+++.+|    ++|+|+||+||||+|+.|+..+..+.
T Consensus         6 ~~~~~~~~~~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~   47 (195)
T d1x6va3           6 KRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHG   47 (195)
T ss_dssp             HHHHHHSSSCSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            344444444432    77999999999999999999875443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=3.6e-06  Score=65.88  Aligned_cols=25  Identities=32%  Similarity=0.499  Sum_probs=22.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +++|+||+|+||||+++.+|..+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4899999999999999999998743

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.85  E-value=4.4e-06  Score=66.00  Aligned_cols=25  Identities=40%  Similarity=0.636  Sum_probs=22.6

Q ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           34 CPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .+.++|+||||+||||+++.|+..+
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3558999999999999999999977

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=7.9e-06  Score=64.48  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=23.0

Q ss_pred             CCe-EEEECCCCCcHHHHHHHHHHHhc
Q 017844           34 CPH-LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        34 ~~~-lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .++ ++|.||||+||||+++.+++.+.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345 88999999999999999999874

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.75  E-value=6.2e-05  Score=63.90  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=27.4

Q ss_pred             HHHHHHHHHcC-CCCe-EEEECCCCCcHHHHHHHHHHHh
Q 017844           22 AQNLKKLVTEQ-DCPH-LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        22 ~~~l~~~l~~~-~~~~-lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ...+..++..+ ...+ ++|+||+++|||+++.++++.+
T Consensus        90 ~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34555566443 2233 8999999999999999999854

>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: gamma subunit
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=9.7e-06  Score=60.84  Aligned_cols=100  Identities=14%  Similarity=0.114  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----h--------CCHHHHHHHHHHHHHhh
Q 017844          254 EEFVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK----R--------LDAEIKHEVCHWAAYYV  321 (365)
Q Consensus       254 ~~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~----~--------~~~~~~~~~~~~~~~~~  321 (365)
                      .+.+++++++++.++    ..++.+.+.++...|.++..+++.+.+++.+    +        .......++.+.+.+++
T Consensus         4 ~~~~~~L~~~I~~~d----~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~~a~~~~   79 (126)
T d1jr3a1           4 DDQALSLVEAMVEAN----GERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP   79 (126)
T ss_dssp             HHHHHHHHHHHHHTC----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHcCC
Confidence            467889999999854    4666677788889999999999999988875    1        12233567888888888


Q ss_pred             hhhHHHHhhhcccCCCCCccccccccc-cccchhcccC
Q 017844          322 SISFQILFIVPLVDFPSPLECSAQAAY-IQPPLIRANS  358 (365)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (365)
                      ....+.++++ +.+.....+.+.+|+. +||+|+||.+
T Consensus        80 ~~~L~~~~~i-l~~~~~~ik~s~~~r~~~Em~llrll~  116 (126)
T d1jr3a1          80 PTDIQLYYQT-LLIGRKELPYAPDRRMGVEMTLLRALA  116 (126)
T ss_dssp             HHHHHHHHHH-HHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            8867776765 4455555556655665 9999999773

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.69  E-value=2.1e-05  Score=59.48  Aligned_cols=42  Identities=12%  Similarity=0.176  Sum_probs=27.2

Q ss_pred             CCCceEEEEeCCCCCCHHHHH--HHHHHHhhhcCceeEEEEecCC
Q 017844          128 KRGFKVLVLNEVDKLSREAQH--SLRRTMEKYSASCRLILCCNSS  170 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~~~~~~--~Ll~~le~~~~~~~~Il~t~~~  170 (365)
                      ..+++++|+||+|.+++....  .++..+... .+..+|+.|..+
T Consensus        96 ~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~-~~~~~l~lTATP  139 (140)
T d1yksa1          96 VVNWEVIIMDEAHFLDPASIAARGWAAHRARA-NESATILMTATP  139 (140)
T ss_dssp             CCCCSEEEETTTTCCSHHHHHHHHHHHHHHHT-TSCEEEEECSSC
T ss_pred             ccceeEEEEccccccChhhHHHHHHHHHHhhC-CCCCEEEEEcCC
Confidence            456789999999999776443  333333333 356777776554

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.69  E-value=0.00011  Score=64.17  Aligned_cols=38  Identities=21%  Similarity=0.373  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           19 QDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        19 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++....+...++.+..  ++++||+|+||||++++++..+
T Consensus       153 ~~~~~~l~~~v~~~~n--ili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         153 EQAISAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HHHHHHHHHHHHHTCC--EEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHhCCC--EEEEeeccccchHHHHHHhhhc
Confidence            5666778888877765  9999999999999999998854

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=8.4e-06  Score=65.11  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|+||+||||||+|+.|++.+
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999976

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.68  E-value=1.1e-05  Score=63.80  Aligned_cols=24  Identities=25%  Similarity=0.585  Sum_probs=21.8

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      -+++|+||||+||||+++.|+..+
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHh
Confidence            349999999999999999999875

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.67  E-value=0.00012  Score=55.26  Aligned_cols=41  Identities=5%  Similarity=0.245  Sum_probs=26.9

Q ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHhhh--cCceeEEEEecC
Q 017844          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKY--SASCRLILCCNS  169 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~--~~~~~~Il~t~~  169 (365)
                      .+++++|+||+|.++......+...++..  .....+++.|..
T Consensus        93 ~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TAT  135 (136)
T d1a1va1          93 GAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATAT  135 (136)
T ss_dssp             CCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESS
T ss_pred             hcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            45689999999999887665555555532  234455555543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=3.1e-05  Score=63.22  Aligned_cols=26  Identities=27%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             Ce-EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           35 PH-LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        35 ~~-lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      |. ++++|.||+||||+|+.|++.+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            45 899999999999999999997753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=0.0001  Score=58.31  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++++|+||+||||+++.++..
T Consensus        17 iil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          17 VVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHTGG
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999887653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=1.5e-05  Score=62.66  Aligned_cols=26  Identities=35%  Similarity=0.480  Sum_probs=22.7

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      |.++|.|++|+||||+++.+|..+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45788899999999999999998843

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.63  E-value=1.2e-05  Score=63.34  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||||+||||+|+.+++.+
T Consensus         5 I~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8999999999999999999875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.63  E-value=1.4e-05  Score=63.45  Aligned_cols=24  Identities=25%  Similarity=0.283  Sum_probs=22.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++|+|+||+||||+++.+++.|..
T Consensus         9 I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           9 IFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            889999999999999999998854

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=2.5e-05  Score=61.29  Aligned_cols=26  Identities=35%  Similarity=0.538  Sum_probs=23.1

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      |.+.|+|++|+|||||++.+++.+..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            55899999999999999999997743

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.54  E-value=2.1e-05  Score=62.09  Aligned_cols=23  Identities=17%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+||+|+||||+|+.|++.+.
T Consensus         6 I~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999999763

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=0.00013  Score=59.34  Aligned_cols=29  Identities=38%  Similarity=0.471  Sum_probs=23.6

Q ss_pred             CCCCe-EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           32 QDCPH-LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        32 ~~~~~-lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +..|+ ++|.||+|+||||.+-.+|..+..
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~   35 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ   35 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            44566 889999999999998888887643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.50  E-value=2.7e-05  Score=61.01  Aligned_cols=23  Identities=43%  Similarity=0.664  Sum_probs=21.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +++|.|+||+||||+++.+|+.+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999987

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.48  E-value=2.9e-05  Score=61.31  Aligned_cols=24  Identities=25%  Similarity=0.337  Sum_probs=21.7

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +++|.|+||+||||+++.+|+.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            378899999999999999999874

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.44  E-value=0.00021  Score=57.58  Aligned_cols=45  Identities=11%  Similarity=0.105  Sum_probs=26.4

Q ss_pred             CCCceEEEEeCCCCCCHHH-HHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          128 KRGFKVLVLNEVDKLSREA-QHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       128 ~~~~~vliiDE~~~L~~~~-~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      ..+.+++|+||+|.+..+. ...+...+.....+..+++.|..+..
T Consensus       123 ~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~SATp~~  168 (200)
T d1wp9a1         123 LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGS  168 (200)
T ss_dssp             TTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCS
T ss_pred             ccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEEEEEecCCC
Confidence            3466899999999876432 23333333333445566666666654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.42  E-value=1.8e-05  Score=62.56  Aligned_cols=22  Identities=50%  Similarity=0.674  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||||+++.+++.+
T Consensus         7 I~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTCS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999998864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.42  E-value=0.00015  Score=59.72  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|+||+.+||||++|.++-.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHHH
Confidence            799999999999999988654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.37  E-value=0.00013  Score=59.32  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=18.3

Q ss_pred             CCCe-EEEECCCCCcHHHHHHHHHHHhc
Q 017844           33 DCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        33 ~~~~-lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|+ ++|.||+|+||||++-.+|..+.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4566 88999999999999888887654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.37  E-value=5.5e-05  Score=60.95  Aligned_cols=22  Identities=36%  Similarity=0.653  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||||+++.|+..+
T Consensus         9 I~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           9 VFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999976

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00035  Score=57.89  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|+||+++||||++|.++-.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHHH
Confidence            799999999999999998764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.34  E-value=5.3e-05  Score=60.85  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=21.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .++|.||||+||||+++.|+..+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999999977

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=0.00024  Score=57.85  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             CCCe-EEEECCCCCcHHHHHHHHHHHhc
Q 017844           33 DCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        33 ~~~~-lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ..|+ ++|.||+|+||||.+-.+|..+.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456 89999999999999888887664

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=6.8e-05  Score=59.60  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||||+++.||..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999987

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=6.8e-05  Score=60.35  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||||.|+.||+.+
T Consensus         4 I~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           4 VFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999976

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=9e-05  Score=62.68  Aligned_cols=35  Identities=26%  Similarity=0.469  Sum_probs=29.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      ..|+||||+|||+++..++.....+....++++..
T Consensus        57 tei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            89999999999999999888877776666776654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.28  E-value=8.6e-05  Score=59.05  Aligned_cols=23  Identities=39%  Similarity=0.704  Sum_probs=21.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|.||||+||||+++.|+..+.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999999873

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=7e-05  Score=60.44  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=21.6

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +-++|.||||+||||+|+.|++.+
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            348999999999999999999976

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.27  E-value=0.0001  Score=58.48  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=23.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      ++|.|++|+||||+++.++..+....
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            89999999999999999999875543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.23  E-value=0.0016  Score=52.55  Aligned_cols=24  Identities=38%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++|.||+|+||||++-.+|..+..
T Consensus         9 i~lvGptGvGKTTTiaKLA~~~~~   32 (207)
T d1okkd2           9 VLVVGVNGVGKTTTIAKLGRYYQN   32 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            889999999999998888887643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.21  E-value=0.0001  Score=58.69  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|.||||+||||+++.||..+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999999873

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.21  E-value=0.00012  Score=58.68  Aligned_cols=22  Identities=36%  Similarity=0.673  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||||.++.||..+
T Consensus         6 iil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999999976

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.21  E-value=0.00011  Score=58.98  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=22.5

Q ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           33 DCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        33 ~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.-.++|.||||+||||+++.||..+
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            44458899999999999999999975

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.19  E-value=0.00043  Score=55.91  Aligned_cols=42  Identities=19%  Similarity=0.284  Sum_probs=29.1

Q ss_pred             CceEEEEeCCCCCCH----HHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          130 GFKVLVLNEVDKLSR----EAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       130 ~~~vliiDE~~~L~~----~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ..+++|+||+|.+..    .....++..+.+..+++++|+.|....
T Consensus       138 ~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl~  183 (202)
T d2p6ra3         138 AVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP  183 (202)
T ss_dssp             GCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT
T ss_pred             hhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcCCCC
Confidence            457999999998743    233456666776667788887776543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.17  E-value=0.001  Score=55.01  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=25.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCcccee
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKV   68 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~   68 (365)
                      .+++||||+|||+++..++...........++
T Consensus        29 ~li~G~pGsGKT~l~~qia~~~~~~~~~~~~i   60 (242)
T d1tf7a2          29 ILATGATGTGKTLLVSRFVENACANKERAILF   60 (242)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHhcccccee
Confidence            89999999999999999988765554444333

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00011  Score=58.44  Aligned_cols=22  Identities=36%  Similarity=0.696  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||||+++.|+..+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7888999999999999999976

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.15  E-value=0.00029  Score=56.30  Aligned_cols=25  Identities=32%  Similarity=0.240  Sum_probs=21.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      +.|.||+|+||||+|+.|+..+...
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhccc
Confidence            6799999999999999999876543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.13  E-value=0.0021  Score=51.80  Aligned_cols=24  Identities=33%  Similarity=0.354  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++|.||+|+||||++-.+|..+..
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~~   36 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYKG   36 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            788999999999999888886643

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.13  E-value=0.00014  Score=58.62  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||||.++.|+..+
T Consensus        11 I~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999965

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.0023  Score=51.70  Aligned_cols=43  Identities=12%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             CCceEEEEeCCCCCC-HHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~-~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+-+.+|+||+|.|- .+....+..+++..+....++++|....
T Consensus       142 ~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~SATl~  185 (206)
T d1s2ma1         142 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP  185 (206)
T ss_dssp             TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred             ccceEEEeechhhhhhhhhHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            345789999998764 4456677777777777777888776654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00013  Score=57.76  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||||+||||.++.|++.+
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999999976

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.06  E-value=0.00028  Score=57.43  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=26.2

Q ss_pred             HHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        25 l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .+......+..-++|+|.||+||||+++.+++.+.
T Consensus        15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34444443333399999999999999999998764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.05  E-value=0.00038  Score=58.79  Aligned_cols=35  Identities=29%  Similarity=0.488  Sum_probs=29.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENK   71 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~   71 (365)
                      ..|+||+|+|||+++..++.....+....++++..
T Consensus        60 tei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            89999999999999999988777666666777664

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.01  E-value=0.00022  Score=56.74  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      ++|.|++|+||||+++.++..+...
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            6889999999999999999987544

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00021  Score=58.51  Aligned_cols=22  Identities=36%  Similarity=0.617  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.+.||||+||+|.++.|++.+
T Consensus         6 I~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7888999999999999999987

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.91  E-value=0.00025  Score=58.18  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.+.||||+||||.|+.||..+
T Consensus         6 IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5577999999999999999987

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=0.016  Score=44.97  Aligned_cols=20  Identities=40%  Similarity=0.620  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.|.|.+|+||||+++.+.+
T Consensus         8 I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           8 VAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999876

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.004  Score=50.21  Aligned_cols=43  Identities=16%  Similarity=0.292  Sum_probs=30.5

Q ss_pred             CCceEEEEeCCCCCC-HHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~-~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      ..-+.+|+||+|.|. .+....+..+++..+.+..+++.|....
T Consensus       145 ~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~  188 (206)
T d1veca_         145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP  188 (206)
T ss_dssp             TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred             cccceEEEeccccccccchHHHHHHHHHhCCCCCEEEEEEecCC
Confidence            455799999998654 4445566777777777777777776554

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00039  Score=55.70  Aligned_cols=22  Identities=36%  Similarity=0.767  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||+|+||||+++.++...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8899999999999999998864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.0058  Score=48.87  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=20.5

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      |.++|.|+||+|||||+..+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45999999999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00039  Score=55.48  Aligned_cols=22  Identities=36%  Similarity=0.754  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|+||+|+||||+++.+++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999998864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.77  E-value=0.00036  Score=55.36  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.||+|+||||+++.+....
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            8999999999999999998754

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0042  Score=50.54  Aligned_cols=44  Identities=16%  Similarity=0.340  Sum_probs=32.4

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      ..-+.+|+||+|.|... ..+.+..+++..+.+..++++|....+
T Consensus       154 ~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~  198 (218)
T d2g9na1         154 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPS  198 (218)
T ss_dssp             TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred             ccceEEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecCCH
Confidence            45589999999987543 355667777777777888888877654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.73  E-value=0.00045  Score=53.82  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=22.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      +.++|++|+||||++..++++|...
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            6799999999999999999987644

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.71  E-value=0.0027  Score=51.21  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=26.9

Q ss_pred             CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      .+...+.+..+++.+   +.++.+|+|+|||.++-.++..+
T Consensus        72 r~yQ~eav~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~  109 (206)
T d2fz4a1          72 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL  109 (206)
T ss_dssp             CHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhCC---CcEEEeCCCCCceehHHhHHHHh
Confidence            344555555565432   36788999999999988877765

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.02  Score=46.69  Aligned_cols=45  Identities=13%  Similarity=0.039  Sum_probs=35.0

Q ss_pred             ccCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           16 IVHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        16 ig~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ..|..+.+.+...+..+..-+.||+|..|+|||-++-..+.....
T Consensus        58 ~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~  102 (233)
T d2eyqa3          58 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD  102 (233)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH
Confidence            346777788888888877767899999999999988666654443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.70  E-value=0.00073  Score=56.99  Aligned_cols=36  Identities=22%  Similarity=0.441  Sum_probs=28.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCccceecccc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKT   72 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~   72 (365)
                      ..|+||+|+|||+++..++..........++++...
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            899999999999999888876666666667776643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.0012  Score=51.22  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+|||||+..+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988875

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.0062  Score=49.27  Aligned_cols=52  Identities=10%  Similarity=0.259  Sum_probs=34.6

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcc
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR  180 (365)
                      .+.+.+++||+|.+... ..+.+.++++..+.+..+++.|.....-...+.++
T Consensus       150 ~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~  202 (212)
T d1qdea_         150 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTK  202 (212)
T ss_dssp             TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHH
T ss_pred             CcceEEeehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHH
Confidence            45689999999977543 45567777777777777888776654323334443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00061  Score=55.40  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|+||+|+||||+++.++..+.
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            67999999999999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.005  Score=47.08  Aligned_cols=20  Identities=35%  Similarity=0.624  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+|||||++++.+
T Consensus         4 I~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.028  Score=43.21  Aligned_cols=20  Identities=40%  Similarity=0.695  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.+.|++|+|||||++.+.+
T Consensus         3 V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           3 VLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999875

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0088  Score=48.69  Aligned_cols=44  Identities=18%  Similarity=0.351  Sum_probs=32.1

Q ss_pred             CCceEEEEeCCCCCC-HHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          129 RGFKVLVLNEVDKLS-REAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       129 ~~~~vliiDE~~~L~-~~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      ..-+.+|+||+|.|. .+....+..+++..+....+++.+....+
T Consensus       158 ~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~  202 (222)
T d2j0sa1         158 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH  202 (222)
T ss_dssp             TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred             ccceeeeecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCH
Confidence            455799999998664 44566677778777777888887776553

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.018  Score=46.13  Aligned_cols=52  Identities=13%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             CCceEEEEeCCCCCC--HHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhcc
Q 017844          129 RGFKVLVLNEVDKLS--REAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR  180 (365)
Q Consensus       129 ~~~~vliiDE~~~L~--~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR  180 (365)
                      .+-+.+++||+|.|.  ....+.+..+++..+....+++++....+-...+.++
T Consensus       144 ~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~  197 (207)
T d1t6na_         144 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK  197 (207)
T ss_dssp             TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred             cccceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHH
Confidence            455799999998653  2455566677776677777777766654323334333

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.0053  Score=49.23  Aligned_cols=21  Identities=43%  Similarity=0.585  Sum_probs=19.2

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      +++|.|++|+|||||++.+.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999876

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.45  E-value=0.0018  Score=49.65  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=22.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++|.|+=|+||||++|.+++.+..
T Consensus        36 i~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          36 VYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEecCCCccHHHHHHHHHhhccc
Confidence            889999999999999999998744

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=96.44  E-value=0.012  Score=44.06  Aligned_cols=38  Identities=13%  Similarity=0.145  Sum_probs=24.7

Q ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~  169 (365)
                      ...++++|||++.++. ....+.+.+.+.  +..+++.+=+
T Consensus        78 ~~~dvI~IDE~QFf~d-~i~~~~~~~~~~--g~~Viv~GLd  115 (139)
T d2b8ta1          78 DETKVIGIDEVQFFDD-RICEVANILAEN--GFVVIISGLD  115 (139)
T ss_dssp             TTCCEEEECSGGGSCT-HHHHHHHHHHHT--TCEEEEECCS
T ss_pred             cCcCEEEechhhhcch-hHHHHHHHHHhc--CceEEEEEec
Confidence            4568999999999974 344556666543  4455555433

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.44  E-value=0.0083  Score=48.28  Aligned_cols=43  Identities=14%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             CCceEEEEeCCCCC-CHHHHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKL-SREAQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L-~~~~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+-+.+++||+|.+ +.+....+.++++..+.+..+++.|....
T Consensus       144 ~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~  187 (208)
T d1hv8a1         144 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMP  187 (208)
T ss_dssp             TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred             ccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCCeEEEEEccCC
Confidence            44579999999965 34445567777777777788888776544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00087  Score=54.26  Aligned_cols=21  Identities=43%  Similarity=0.773  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|+||+|+||||+.+.+...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            899999999999999998875

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0011  Score=53.60  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+||||+|||+++..++....
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999887543

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.31  E-value=0.012  Score=47.28  Aligned_cols=43  Identities=9%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             CCceEEEEeCCCCCCHH-HHHHHHHHHhhhcCceeEEEEecCCC
Q 017844          129 RGFKVLVLNEVDKLSRE-AQHSLRRTMEKYSASCRLILCCNSSS  171 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~-~~~~Ll~~le~~~~~~~~Il~t~~~~  171 (365)
                      .+-+.+++||+|.+... ..+.+..++...+.+..+++.|....
T Consensus       146 ~~l~~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~  189 (209)
T d1q0ua_         146 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIP  189 (209)
T ss_dssp             GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred             ccceEEEEeecccccccccHHHHHHHHHHCCCCCEEEEEEccCC
Confidence            45578999999987544 34456666777677788888776654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.015  Score=44.56  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||+|+..+...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            799999999999999988763

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.0028  Score=53.72  Aligned_cols=33  Identities=24%  Similarity=0.524  Sum_probs=24.0

Q ss_pred             HHHHcCCC-Ce-EEEECCCCCcHHHHHHHHHHHhc
Q 017844           27 KLVTEQDC-PH-LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        27 ~~l~~~~~-~~-lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .+...++. |- +.|.|++|+||||++..|...+.
T Consensus        18 ~~~~~~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~   52 (286)
T d1odfa_          18 EWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLM   52 (286)
T ss_dssp             HHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCEEEEeECCCCCCHHHHHHHHHHHHH
Confidence            33333333 43 67999999999999998877663

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0027  Score=55.05  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           32 QDCPHLLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        32 ~~~~~lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      ++...+.|+||||+|||||+..+++.+...
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            333339999999999999999998876543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.001  Score=54.90  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|+||||+|||+++..++..
T Consensus        37 ~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            999999999999999887653

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0014  Score=51.64  Aligned_cols=21  Identities=24%  Similarity=0.605  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|.||+|+||||+++.+++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999998864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0058  Score=47.10  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||++..+...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988763

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.16  E-value=0.0015  Score=54.15  Aligned_cols=23  Identities=35%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+||||+|||+++..++....
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhh
Confidence            99999999999999998877543

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=96.13  E-value=0.0054  Score=52.27  Aligned_cols=41  Identities=7%  Similarity=0.130  Sum_probs=23.7

Q ss_pred             CCceEEEEeCCCCCCHHHHH--HHHHHHhhhcCceeEEEEecCC
Q 017844          129 RGFKVLVLNEVDKLSREAQH--SLRRTMEKYSASCRLILCCNSS  170 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~~~~--~Ll~~le~~~~~~~~Il~t~~~  170 (365)
                      .+.+++|+||+|.++.....  .++..+... ....+++.|...
T Consensus        99 ~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~-~~~~~v~~SAT~  141 (305)
T d2bmfa2          99 PNYNLIIMDEAHFTDPASIAARGYISTRVEM-GEAAGIFMTATP  141 (305)
T ss_dssp             CCCSEEEEESTTCCSHHHHHHHHHHHHHHHH-TSCEEEEECSSC
T ss_pred             cceeEEEeeeeeecchhhHHHHHHHHHhhcc-ccceEEEeecCC
Confidence            45789999999999876432  222222222 345555555443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.09  E-value=0.0016  Score=49.73  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||||++.+...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0076  Score=46.94  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||+|+..+...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999888764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.06  E-value=0.0042  Score=53.71  Aligned_cols=24  Identities=38%  Similarity=0.375  Sum_probs=21.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +.|+||||+||||++..++..+..
T Consensus        54 igitG~pGaGKSTli~~l~~~~~~   77 (323)
T d2qm8a1          54 VGITGVPGVGKSTTIDALGSLLTA   77 (323)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EeeeCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999986643

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.04  E-value=0.0018  Score=53.40  Aligned_cols=22  Identities=41%  Similarity=0.606  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +++.||+|+|||||+..+.+.+
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            6899999999999999998765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0026  Score=52.65  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=24.9

Q ss_pred             HHHHHHcCCCCe--EEEECCCCCcHHHHHHHHHHHh
Q 017844           25 LKKLVTEQDCPH--LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        25 l~~~l~~~~~~~--lll~Gp~G~GKTtla~~la~~l   58 (365)
                      |..++..|-.+.  ++|+||||+|||+++..++...
T Consensus        26 LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          26 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344444443332  9999999999999999998754

>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.054  Score=40.19  Aligned_cols=123  Identities=15%  Similarity=0.079  Sum_probs=76.1

Q ss_pred             HHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCCCccceeccccceecCCCcceeccccccccccceecCCCCc
Q 017844           24 NLKKLVTEQDCPH-LLFYGPPGSGKKTLIMALLRQVFGPGAEKVKVENKTWKIDAGSRNIDLELTTLSSANHVELSPSDA  102 (365)
Q Consensus        24 ~l~~~l~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (365)
                      .|...++.+ .++ ++|+|+.-.-+......|-..+...+....                            ..... +.
T Consensus         8 ~L~~~l~k~-l~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~~~----------------------------~~~~~-~~   57 (140)
T d1jqlb_           8 QLRAQLNEG-LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEH----------------------------HTFSI-DP   57 (140)
T ss_dssp             GHHHHHHHC-CCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEE----------------------------ECCCC-ST
T ss_pred             HHHHHHhcC-CCcEEEEEcChHHHHHHHHHHHHHHHHhCCccee----------------------------eeecc-cc
Confidence            345556656 445 999999988888888877665532221100                            00000 10


Q ss_pred             CccchhHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCC-CCHHHHHHHHHHHhhhcCceeEEEEecCCCc------ccH
Q 017844          103 GFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDK-LSREAQHSLRRTMEKYSASCRLILCCNSSSK------VTE  175 (365)
Q Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vliiDE~~~-L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~------l~~  175 (365)
                      . .   ...+++..+ ...++    .+.+++|+|++++. .+....+.|.++++.++..+.+|+++...++      ...
T Consensus        58 ~-~---~~~~l~~~~-~t~sl----F~~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K  128 (140)
T d1jqlb_          58 N-T---DWNAIFSLC-QAMSL----FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFT  128 (140)
T ss_dssp             T-C---CHHHHHHHH-HCCCT----TCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHH
T ss_pred             c-C---CHHHHHHHH-cCCCc----ccCcEEEEEEcCCCCCcHHHHHHHHHHHhCCCCCEEEEEEcCCCCchhhhhHHHH
Confidence            1 1   133454443 34443    56779999999854 4567778899999999988888988876543      345


Q ss_pred             HHhccceeEE
Q 017844          176 AIRSRCLNIR  185 (365)
Q Consensus       176 ~l~sR~~~i~  185 (365)
                      ++..+..+|.
T Consensus       129 ~l~k~g~vI~  138 (140)
T d1jqlb_         129 ALANRSVQVT  138 (140)
T ss_dssp             HHGGGCEEEE
T ss_pred             HHHhCCeEEe
Confidence            5655555554

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0067  Score=46.93  Aligned_cols=21  Identities=24%  Similarity=0.635  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||+|++.+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            799999999999999998763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.92  E-value=0.0091  Score=46.11  Aligned_cols=20  Identities=25%  Similarity=0.594  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|.+|+||||+++.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.018  Score=45.13  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|.+|+|||++++.+...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            799999999999999988763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.84  E-value=0.015  Score=45.33  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|.|++|+|||++++.+...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0021  Score=52.09  Aligned_cols=25  Identities=20%  Similarity=0.306  Sum_probs=22.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      +.|.|+.|+||||.++.++..|...
T Consensus         6 I~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            7888999999999999999987544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.83  E-value=0.0016  Score=52.06  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.|+.|+||||+++.|++.+
T Consensus        12 I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          12 VLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEECSTTSCHHHHHHTTGGGT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999998865

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0044  Score=48.23  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|.+|+|||+|++.+..
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999988875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.77  E-value=0.0032  Score=49.22  Aligned_cols=20  Identities=40%  Similarity=0.612  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.|++|+|||||+..+.+
T Consensus        16 I~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          16 LVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEETTSSHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999988754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0033  Score=53.91  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=22.9

Q ss_pred             CCCe-EEEECCCCCcHHHHHHHHHHHhc
Q 017844           33 DCPH-LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        33 ~~~~-lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|- +.|.|++|+||||+++.+...+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            4444 88999999999999999998764

>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.02  Score=39.25  Aligned_cols=66  Identities=11%  Similarity=0.115  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhhhhhH
Q 017844          256 FVFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--RLDAEIKHEVCHWAAYYVSISF  325 (365)
Q Consensus       256 ~i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~  325 (365)
                      .+.++++.+.+    +++.++.+.+.+++..|.+...|+.++.+.+..  .+++..+.++....+..+.|+.
T Consensus         5 ~i~~il~~~~~----~~f~~a~~~i~~l~~~Gys~~dIl~~l~~~vv~~~~i~~~~k~~i~~~la~~d~rL~   72 (91)
T d1sxjd1           5 ILIEIVEKVKS----GDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLN   72 (91)
T ss_dssp             HHHHHHHHHHS----CCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45566666654    678889999999999999999999999998765  4678899999999999998854

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0027  Score=51.31  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=22.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      +.|.|+.|+||||+++.+++.+...
T Consensus         5 IviEG~dGsGKsT~~~~L~~~L~~~   29 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVETLEQL   29 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhC
Confidence            8899999999999999999977543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.012  Score=44.98  Aligned_cols=20  Identities=35%  Similarity=0.655  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|.+|+|||++++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999999875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.70  E-value=0.0032  Score=49.96  Aligned_cols=20  Identities=35%  Similarity=0.376  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.++|++|+||||+|+.+..
T Consensus         6 IgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998854

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0097  Score=45.81  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|.+|+|||++++.+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999988763

>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.67  E-value=0.032  Score=38.49  Aligned_cols=67  Identities=18%  Similarity=0.141  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhhhhhH
Q 017844          255 EFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLK-RLDAEIKHEVCHWAAYYVSISF  325 (365)
Q Consensus       255 ~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~  325 (365)
                      ..+.++++...+    +++.+++..+++++ .+|+++..|+.++.+.+.+ .+++..+.++...++..++|+.
T Consensus         5 ~~I~~il~~~l~----~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~~~~~~~~~k~~ll~~la~~d~rL~   73 (95)
T d1iqpa1           5 EDIREMMLLALK----GNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLV   73 (95)
T ss_dssp             HHHHHHHHHHHH----TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            345566666655    67899999999986 5799999999999998876 6788899999999999998865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.67  E-value=0.0031  Score=48.40  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|.|++|+|||||++.+...
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999998763

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.65  E-value=0.052  Score=44.93  Aligned_cols=21  Identities=24%  Similarity=0.558  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|.|.+|+||||++..|.+.
T Consensus        35 I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          35 ILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            999999999999999998763

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.64  E-value=0.0044  Score=50.37  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=24.8

Q ss_pred             HHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 017844           22 AQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        22 ~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      +..|+.+++ ++.  .+|.|++|+|||||+.++...
T Consensus        86 ~~~L~~~l~-~kt--~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          86 IEELKEYLK-GKI--STMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHHHHHS-SSE--EEEECSTTSSHHHHHHHHSTT
T ss_pred             HhhHHHHhc-CCe--EEEECCCCCCHHHHHHhhcch
Confidence            556666663 332  789999999999999988653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0032  Score=47.96  Aligned_cols=21  Identities=43%  Similarity=0.642  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||||+..+.+.
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998763

>d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: delta subunit
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0021  Score=47.39  Aligned_cols=100  Identities=17%  Similarity=0.118  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------------hCCHHHHHHHHHH
Q 017844          257 VFEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLK--------------------RLDAEIKHEVCHW  316 (365)
Q Consensus       257 i~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~--------------------~~~~~~~~~~~~~  316 (365)
                      +|+++++++.+    +..++...+..+..+|.+|..++..+..++.+                    .+.+.....+.+.
T Consensus         3 ~F~L~dai~~g----d~~~a~~il~~l~~~g~~~~~il~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   78 (127)
T d1jr3d1           3 PFHWVDALLMG----KSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEA   78 (127)
T ss_dssp             HHHHHHHHTTS----CHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHH
T ss_pred             HHHHHHHHHcC----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHcCCCHHHHHHHHHH
Confidence            68999999884    55667677788888999999999988887655                    1122225567777


Q ss_pred             HHHhhhh-hHHHHhhhcccCCCCCcccc--ccccc-cccchhcccCCCcc
Q 017844          317 AAYYVSI-SFQILFIVPLVDFPSPLECS--AQAAY-IQPPLIRANSDPVA  362 (365)
Q Consensus       317 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~  362 (365)
                      +..|+.. +...+..  +.+.+...|.+  .+|.. +|..++++|+-+++
T Consensus        79 ~~~~s~~~l~~~l~~--l~~~D~~~K~~~~~~~~~~le~l~l~lc~~~l~  126 (127)
T d1jr3d1          79 LNRLSQTQLRQAVQL--LTRTELTLKQDYGQSVWAELEGLSLLLCHKPLA  126 (127)
T ss_dssp             HHHSCHHHHHHHHHH--HHHHHHHHHHSSCSCHHHHHHHHHHHTTSCCCC
T ss_pred             HHhCCHHHHHHHHHH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhCcccc
Confidence            7888766 4444333  44444456643  33433 99999999998875

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.59  E-value=0.0029  Score=50.33  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=21.7

Q ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Q 017844           32 QDCPHLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        32 ~~~~~lll~Gp~G~GKTtla~~la~   56 (365)
                      +..|.+.|.|+||+|||||++++.+
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcC
Confidence            4556699999999999999999975

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.03  Score=43.57  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|.+|+|||++++.+...
T Consensus         8 ivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999988763

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.50  E-value=0.029  Score=43.64  Aligned_cols=20  Identities=40%  Similarity=0.632  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.|.|.+|+|||||+.++.+
T Consensus        11 V~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHC
Confidence            89999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.50  E-value=0.0035  Score=51.54  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+|+||+|||+++..+|..+.
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.0013  Score=52.54  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      .+|+||+|+||||++.+|.-.+.+
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcC
Confidence            578999999999999999876644

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.40  E-value=0.0023  Score=54.23  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=19.3

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcC
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      |-+.++|++|+||||+++.+...+..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            34899999999999999999886643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.30  E-value=0.0052  Score=49.23  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=21.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      +.|.|+.|+||||+++.+++.+...
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~   27 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAA   27 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            6789999999999999999887543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.005  Score=47.90  Aligned_cols=20  Identities=25%  Similarity=0.566  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+|||+++..+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998865

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.27  E-value=0.0055  Score=47.55  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=18.9

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      .++|.|.+|+|||||+..+..
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            499999999999999998865

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.27  E-value=0.0054  Score=47.83  Aligned_cols=20  Identities=30%  Similarity=0.577  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.|++|+||||++..+..
T Consensus        17 vl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          17 VLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999987765

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.038  Score=49.02  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      ++.+.|.+|+||||++.++.+
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            499999999999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.25  E-value=0.0046  Score=47.56  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.|++|+|||||++.+.+
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            89999999999999998755

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0063  Score=49.25  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Q 017844           36 HLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      -+.|.|+-|+||||+++.+++.+.
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            389999999999999999998763

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.19  E-value=0.0041  Score=50.74  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|+|+||+|||+++..++.
T Consensus        29 ~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          29 TLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999976654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.18  E-value=0.0057  Score=47.04  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      ++|.|++|+||||++..+...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999988663

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.16  E-value=0.057  Score=45.34  Aligned_cols=39  Identities=13%  Similarity=0.154  Sum_probs=28.7

Q ss_pred             CHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844           18 HQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        18 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .+.....+..+++.++   .++.-|.|+|||.++-.+++.+.
T Consensus       115 rdyQ~~av~~~l~~~~---~il~~pTGsGKT~i~~~i~~~~~  153 (282)
T d1rifa_         115 HWYQKDAVFEGLVNRR---RILNLPTSAGRSLIQALLARYYL  153 (282)
T ss_dssp             CHHHHHHHHHHHHHSE---EEECCCTTSCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcCC---ceeEEEcccCccHHHHHHHHHhh
Confidence            4555666777776553   57888999999998888876553

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.15  E-value=0.0058  Score=47.28  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||++..+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            799999999999999988763

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.09  E-value=0.0087  Score=50.86  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=16.6

Q ss_pred             CeEEEECCCCCcHHHHH-HHHHH
Q 017844           35 PHLLFYGPPGSGKKTLI-MALLR   56 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla-~~la~   56 (365)
                      .++++.|+|||||||++ ..++.
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHH
Confidence            45899999999999865 33433

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0064  Score=46.85  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||++++.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.007  Score=47.10  Aligned_cols=20  Identities=30%  Similarity=0.624  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998866

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0067  Score=49.82  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +.|.|+-|+||||+++.++..+..
T Consensus         5 IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           5 LSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHhh
Confidence            899999999999999999997643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0075  Score=46.60  Aligned_cols=21  Identities=33%  Similarity=0.736  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||+|++.+...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.034  Score=43.66  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||+++..+...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999888763

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.0074  Score=48.57  Aligned_cols=20  Identities=35%  Similarity=0.434  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.++|++|+||||+++.+..
T Consensus         6 IgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHHH
Confidence            67999999999999998864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.90  E-value=0.0054  Score=47.84  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.||+|+||||++..+..
T Consensus        18 vli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            89999999999999977654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0066  Score=47.03  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||||++.+...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            799999999999999998763

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.0078  Score=46.70  Aligned_cols=20  Identities=25%  Similarity=0.594  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0074  Score=47.42  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999988764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0083  Score=46.22  Aligned_cols=20  Identities=20%  Similarity=0.446  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.|.+|+|||++++.+..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998876

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.021  Score=43.95  Aligned_cols=20  Identities=35%  Similarity=0.609  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+|||+++..+..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.77  E-value=0.0077  Score=46.62  Aligned_cols=20  Identities=30%  Similarity=0.601  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.|++|+||||++-.+..
T Consensus        18 vli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          18 VLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999977765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.0077  Score=46.62  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.|.+|+|||+|++.+..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998865

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.72  E-value=0.0081  Score=48.18  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.++|+.||||||+++.+..
T Consensus         5 IgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999988753

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.72  E-value=0.013  Score=50.27  Aligned_cols=24  Identities=25%  Similarity=0.366  Sum_probs=17.5

Q ss_pred             CeEEEECCCCCcHHHHH-HHHHHHh
Q 017844           35 PHLLFYGPPGSGKKTLI-MALLRQV   58 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla-~~la~~l   58 (365)
                      .++++.|+|||||||++ ..++..+
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHHHHH
Confidence            34899999999999865 4444433

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.69  E-value=0.0095  Score=45.68  Aligned_cols=20  Identities=20%  Similarity=0.378  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.69  E-value=0.008  Score=46.22  Aligned_cols=21  Identities=29%  Similarity=0.672  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+||||+++.++..
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.64  E-value=0.0059  Score=47.78  Aligned_cols=20  Identities=40%  Similarity=0.620  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      ++|.|+||+|||||..++.+
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0092  Score=46.10  Aligned_cols=20  Identities=25%  Similarity=0.732  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|.+|+|||||+..+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999988765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0036  Score=51.43  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|.|+.|+||||+++.|++.+
T Consensus         5 I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           5 ISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             EEEECSTTSSHHHHHTTTGGGC
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.0098  Score=46.14  Aligned_cols=20  Identities=25%  Similarity=0.554  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||++..+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999988866

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.59  E-value=0.038  Score=41.20  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=23.6

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecC
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNS  169 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~  169 (365)
                      .+++++|||++.++......+ ..+.+.  +..+++.+=+
T Consensus        80 ~~dvI~IDE~QFf~d~~~~~~-~~l~~~--g~~Viv~GLd  116 (141)
T d1xx6a1          80 DTEVIAIDEVQFFDDEIVEIV-NKIAES--GRRVICAGLD  116 (141)
T ss_dssp             TCSEEEECSGGGSCTHHHHHH-HHHHHT--TCEEEEEECS
T ss_pred             cccEEEEeehhhccccHHHHH-HhheeC--CcEEEEEEec
Confidence            468999999999986555444 444433  4455555443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.57  E-value=0.01  Score=46.48  Aligned_cols=20  Identities=25%  Similarity=0.586  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|.+|+||||++..+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.57  E-value=0.011  Score=45.60  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|.+|+||||+++.+...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.0095  Score=45.85  Aligned_cols=20  Identities=20%  Similarity=0.433  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+|||||++.+..
T Consensus         7 v~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.47  E-value=0.088  Score=40.66  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      ++-+.|.+++|||||+.++.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            378999999999999999875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.011  Score=45.57  Aligned_cols=20  Identities=25%  Similarity=0.571  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+|||++++.+..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            79999999999999998865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.46  E-value=0.0085  Score=46.47  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+..
T Consensus        19 I~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            99999999999999987743

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0095  Score=45.97  Aligned_cols=20  Identities=35%  Similarity=0.595  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+|||++++.+.+
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999998765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.012  Score=45.81  Aligned_cols=20  Identities=30%  Similarity=0.667  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|.+|+||||+++.+..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998876

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.01  Score=45.93  Aligned_cols=20  Identities=30%  Similarity=0.657  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|.+|+||||+++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            79999999999999998865

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.33  E-value=0.0065  Score=51.86  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      -+|+||+|+|||++..+|.-.+
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6899999999999999997533

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=94.31  E-value=0.021  Score=54.39  Aligned_cols=57  Identities=12%  Similarity=0.200  Sum_probs=37.8

Q ss_pred             cccccCCCCCCccccCHH--HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844            3 WVDKYRPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus         3 w~~k~rP~~~~~iig~~~--~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      |+++|+.+...++.-|--  +-.+.+.+...++...+++.|.+|+|||+.++.+.+.+.
T Consensus        53 ~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          53 DIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             HHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            345565554444433322  224555566666655599999999999999999988763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.25  E-value=0.013  Score=45.11  Aligned_cols=21  Identities=19%  Similarity=0.596  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||+|+..+...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.22  E-value=1.1  Score=37.00  Aligned_cols=26  Identities=15%  Similarity=0.065  Sum_probs=21.6

Q ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           33 DCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        33 ~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +..|+.+.|..|+|||||+.++....
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            34568999999999999999997643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.013  Score=45.29  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+|||+|++.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999988764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.17  E-value=0.018  Score=44.38  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||++++.++..
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.14  E-value=0.13  Score=40.51  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.+.|-.+.|||||+.+|.+.+
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            8999999999999999987644

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.013  Score=49.02  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      .+|+|++|+|||+++..+|..+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999887653

>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.11  E-value=0.18  Score=34.48  Aligned_cols=67  Identities=7%  Similarity=-0.045  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhhhhhH
Q 017844          255 EFVFEIASDIMQEQSPKRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLKR--LDAEIKHEVCHWAAYYVSISF  325 (365)
Q Consensus       255 ~~i~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~  325 (365)
                      ..+.++++.+.+    +++.+++..+.+++ ++|.++..|+.++.+++.+.  .++..+.++.+..+..+.|+.
T Consensus         4 ~~I~~il~~~l~----~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~i~~~~~~~~~~k~~ll~~la~~e~rL~   73 (95)
T d1sxjc1           4 SDLKAVLKSILE----DDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSIS   73 (95)
T ss_dssp             HHHHHHHHHHHT----SCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            345667777665    57889999999987 56999999999999998773  346678899999999888754

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.07  E-value=0.026  Score=53.98  Aligned_cols=56  Identities=18%  Similarity=0.320  Sum_probs=37.4

Q ss_pred             ccccCCCCCCccccCH--HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844            4 VDKYRPKTLDQVIVHQ--DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus         4 ~~k~rP~~~~~iig~~--~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +++|+.+...++.-|-  -+-.+.+.++..++...+++.|.+|+|||..++.+.+.+.
T Consensus        93 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2          93 VDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             HHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3455555444443332  2224555666666655599999999999999999988663

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.05  E-value=0.013  Score=46.36  Aligned_cols=20  Identities=35%  Similarity=0.650  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|++|+||||+++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.03  E-value=0.0082  Score=46.55  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.3

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+++.|++|+||||+++.+..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            399999999999999988743

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.91  E-value=0.013  Score=45.91  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=18.4

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+.|.|+||+|||||++++.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999988754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.90  E-value=0.024  Score=47.39  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++|.|+||+|||+++..++..+
T Consensus        38 ~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHhh
Confidence            8999999999999998888654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.89  E-value=0.012  Score=45.96  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=19.1

Q ss_pred             CeEEEECCCCCcHHHHHHHHHH
Q 017844           35 PHLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~   56 (365)
                      +.+.|.|.+|+||||+++.+.+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3488999999999999998854

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.86  E-value=0.018  Score=47.18  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|+|+.||||||+|+.++..+
T Consensus         4 IgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999997753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.83  E-value=0.0094  Score=46.61  Aligned_cols=19  Identities=37%  Similarity=0.679  Sum_probs=17.4

Q ss_pred             EEEECCCCCcHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALL   55 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la   55 (365)
                      +++.|++|+||||+++.+.
T Consensus        20 I~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            9999999999999998763

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.015  Score=45.13  Aligned_cols=20  Identities=40%  Similarity=0.630  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +.|.|.+|+|||||++++.+
T Consensus         8 I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999975

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.012  Score=47.96  Aligned_cols=24  Identities=33%  Similarity=0.469  Sum_probs=20.6

Q ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Q 017844           34 CPHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      +|-++|+|.-|+||||+++.+.+.
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            345899999999999999988774

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.61  E-value=0.16  Score=43.66  Aligned_cols=60  Identities=8%  Similarity=0.233  Sum_probs=39.5

Q ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccceeEEecCCCHHHHHHHHHHHH
Q 017844          130 GFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIA  202 (365)
Q Consensus       130 ~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~i~~~~~~~~~~~~iL~~~~  202 (365)
                      ...++++|=++.+.......+....++   +...|++-|..++....+          ..+.+++...+.+.+
T Consensus       121 D~allVVda~eGv~~qT~~~~~~a~~~---~~p~i~viNKiDr~~~el----------~~~~~~~~~~l~~~i  180 (341)
T d1n0ua2         121 DGALVVVDTIEGVCVQTETVLRQALGE---RIKPVVVINKVDRALLEL----------QVSKEDLYQTFARTV  180 (341)
T ss_dssp             SEEEEEEETTTBSCHHHHHHHHHHHHT---TCEEEEEEECHHHHHHTS----------CCCHHHHHHHHHHHH
T ss_pred             CceEEEEecccCcchhHHHHHHHHHHc---CCCeEEEEECcccccccH----------HhhHHHHHHHHcCcc
Confidence            447999999999999888777776664   566777778766433222          234555555555444

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.59  E-value=0.016  Score=51.61  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      -+|+||+|+|||+++.+|+-.|
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5899999999999999997544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.49  E-value=0.012  Score=45.64  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=8.4

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|.+|+||||+++.+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.011  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Q 017844           34 CPHLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        34 ~~~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+.+.|.|+|++|||||++++.+
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34599999999999999988744

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.39  E-value=0.044  Score=52.35  Aligned_cols=55  Identities=16%  Similarity=0.297  Sum_probs=36.2

Q ss_pred             cccCCCCCCccccCH--HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844            5 DKYRPKTLDQVIVHQ--DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus         5 ~k~rP~~~~~iig~~--~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+-+...++.-|-  -+-.+.+.+...++...+++.|.+|+|||+.++.+.+.|.
T Consensus        60 ~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          60 DMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             HHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            445444444443332  2224555566666655599999999999999999988763

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.25  E-value=0.042  Score=52.71  Aligned_cols=55  Identities=15%  Similarity=0.304  Sum_probs=36.2

Q ss_pred             ccccCCCCCCccccCH--HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844            4 VDKYRPKTLDQVIVHQ--DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus         4 ~~k~rP~~~~~iig~~--~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.+|+-+...++.-|-  -+-.+.+.+...++...+++.|++|+|||..++.+.+.+
T Consensus        62 ~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          62 INAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3445444444443231  223455556666665559999999999999999998876

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.021  Score=51.12  Aligned_cols=28  Identities=36%  Similarity=0.512  Sum_probs=22.6

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      .|+++.|++|+|||++++.+...+....
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g   78 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRG   78 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCC
Confidence            4799999999999999987776665443

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.16  E-value=0.023  Score=44.77  Aligned_cols=18  Identities=33%  Similarity=0.628  Sum_probs=17.3

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMAL   54 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~l   54 (365)
                      +++.|.+|+||||+++.+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            799999999999999988

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.09  E-value=0.0073  Score=46.04  Aligned_cols=21  Identities=38%  Similarity=0.697  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +.|.|.+|+||||+++++.+.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999875

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.01  E-value=0.059  Score=52.09  Aligned_cols=55  Identities=18%  Similarity=0.247  Sum_probs=36.6

Q ss_pred             cccCCCCCCccccCHH--HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844            5 DKYRPKTLDQVIVHQD--IAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus         5 ~k~rP~~~~~iig~~~--~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+-+...++.-|--  +-.+.+.+...++...++++|.+|+|||..++.+.+.+.
T Consensus        92 ~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2          92 LAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             HHTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3444444444433322  224556666666655699999999999999998888763

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.96  E-value=0.051  Score=45.09  Aligned_cols=41  Identities=17%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             cCHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHH
Q 017844           17 VHQDIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        17 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .|..+.+.+...+.++..-+-||.|..|+|||-++-..+..
T Consensus        87 ~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~  127 (264)
T d1gm5a3          87 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILD  127 (264)
T ss_dssp             HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHH
Confidence            36777777777777776656899999999999988665543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.93  E-value=0.042  Score=44.34  Aligned_cols=27  Identities=26%  Similarity=0.279  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPGA   63 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~~   63 (365)
                      +++.|++|+||||+++.+...-..|+.
T Consensus         9 illlG~~~vGKTsll~~~~~~~~~pTi   35 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRILHVVLTS   35 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCcCCCC
Confidence            899999999999999988654333433

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.92  E-value=0.27  Score=36.94  Aligned_cols=48  Identities=13%  Similarity=0.170  Sum_probs=35.7

Q ss_pred             CCCceEEEEeCCCC------CCHHHHHHHHHHHhhhcCceeEEEEecCCCcccHHHhccc
Q 017844          128 KRGFKVLVLNEVDK------LSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRC  181 (365)
Q Consensus       128 ~~~~~vliiDE~~~------L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l~~~l~sR~  181 (365)
                      .+.++++|+||+..      ++   .+.++++|+..|.+.-+|+|.++.+   +.+..+.
T Consensus        92 ~~~~dllILDEi~~Ai~~gli~---~~~v~~ll~~rp~~~evVlTGr~~p---~~L~e~A  145 (157)
T d1g5ta_          92 DPLLDMVVLDELTYMVAYDYLP---LEEVISALNARPGHQTVIITGRGCH---RDILDLA  145 (157)
T ss_dssp             CTTCSEEEEETHHHHHHTTSSC---HHHHHHHHHTSCTTCEEEEECSSCC---HHHHHHC
T ss_pred             cCccCEEeHHHHHHHHHcCCCC---HHHHHHHHHhCCCCCEEEEECCCCC---HHHHHhc
Confidence            46789999999742      23   2467888888888999999998876   4455554

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.032  Score=43.24  Aligned_cols=21  Identities=38%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|++|+|||+++..+...
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999988763

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.71  E-value=0.44  Score=39.33  Aligned_cols=27  Identities=33%  Similarity=0.582  Sum_probs=22.1

Q ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Q 017844           32 QDCPHLLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        32 ~~~~~lll~Gp~G~GKTtla~~la~~l   58 (365)
                      ++...+++.|++|+|||+++..+++..
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            444448999999999999999888754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.54  E-value=0.011  Score=48.10  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      .+|.|++|+|||||+.++...
T Consensus       100 ~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2         100 TVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEESHHHHHHHHHHHHCC-
T ss_pred             EEEECCCCccHHHHHHhhccH
Confidence            789999999999999988654

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.49  E-value=0.056  Score=52.24  Aligned_cols=55  Identities=22%  Similarity=0.320  Sum_probs=36.4

Q ss_pred             cccCCCCCCccccCH--HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844            5 DKYRPKTLDQVIVHQ--DIAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus         5 ~k~rP~~~~~iig~~--~~~~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      ++|+.+...++.-|-  -+-.+.+.+...++...+++.|.+|+|||..++.+.+.|.
T Consensus        90 ~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2          90 AKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             HHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345444444433332  2234566666666655599999999999999999888764

>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.45  E-value=0.26  Score=33.37  Aligned_cols=56  Identities=7%  Similarity=-0.032  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhhhhhHH
Q 017844          271 KRLFQVRGKLYELL-LNCVPPVVVLKRLLYELLK--RLDAEIKHEVCHWAAYYVSISFQ  326 (365)
Q Consensus       271 ~~~~~~~~~l~~l~-~~~~~~~~il~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~  326 (365)
                      .++.++++.+.+++ +.|.++..|+.++.+.+.+  .+++..+.++.+..+..++|+..
T Consensus        13 ~~f~~a~~~l~~~l~~~Gys~~DIi~~l~~~i~~~~~~~e~~k~~il~~la~~~~rl~~   71 (92)
T d1sxjb1          13 SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILE   71 (92)
T ss_dssp             SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHc
Confidence            46777888888755 6799999999999999986  46788999999999999988653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.15  E-value=0.037  Score=43.33  Aligned_cols=21  Identities=38%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~   57 (365)
                      +++.|..|+|||++++.+...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999998664

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.054  Score=45.41  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=27.1

Q ss_pred             HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q 017844           23 QNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        23 ~~l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.+...+-=++....+|.|++|+|||+++..+++...
T Consensus        32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             eeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            3333333335555589999999999999999988653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.65  E-value=0.04  Score=47.40  Aligned_cols=23  Identities=22%  Similarity=0.176  Sum_probs=21.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVF   59 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~   59 (365)
                      +.|-|+-|+||||+++.+++.+.
T Consensus         9 I~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           9 IYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEECCccCCHHHHHHHHHHHhc
Confidence            78999999999999999998764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.46  E-value=0.12  Score=42.91  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=26.6

Q ss_pred             HHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           25 LKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        25 l~~~l~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      +...+..+...-++++|.=|+||||++-.+|..+....
T Consensus        11 ~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G   48 (279)
T d1ihua2          11 LVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMG   48 (279)
T ss_dssp             HHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            33344444333388999999999999988888765443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.26  E-value=0.077  Score=44.43  Aligned_cols=25  Identities=28%  Similarity=0.402  Sum_probs=21.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      ++++|.-|+||||++-.+|..+-..
T Consensus        11 i~~sGKGGVGKTTvaa~lA~~lA~~   35 (296)
T d1ihua1          11 LFFTGKGGVGKTSISCATAIRLAEQ   35 (296)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHHHHC
Confidence            8999999999999999998877543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.23  E-value=1.3  Score=35.09  Aligned_cols=42  Identities=10%  Similarity=0.313  Sum_probs=28.3

Q ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHhhhcCceeEEEEecCCCcc
Q 017844          129 RGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKV  173 (365)
Q Consensus       129 ~~~~vliiDE~~~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~l  173 (365)
                      ...-|+++|=.+.+...... +++.+.+.  +..+|++.|..+.+
T Consensus        94 ~D~~ilVvda~~g~~~~~~~-~~~~~~~~--~~p~iivlNK~D~~  135 (227)
T d1g7sa4          94 ADLAILIVDINEGFKPQTQE-ALNILRMY--RTPFVVAANKIDRI  135 (227)
T ss_dssp             CSEEEEEEETTTCCCHHHHH-HHHHHHHT--TCCEEEEEECGGGS
T ss_pred             cceEEEEEecccCcccchhH-HHHHhhcC--CCeEEEEEECccCC
Confidence            45678999977888777654 45555543  45678888876643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.07  E-value=0.14  Score=40.62  Aligned_cols=22  Identities=32%  Similarity=0.231  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.+.|.+++|||||+.++....
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHh
Confidence            8899999999999999986543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.064  Score=42.67  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=23.2

Q ss_pred             EEEECCC-CCcHHHHHHHHHHHhcCCCCc
Q 017844           37 LLFYGPP-GSGKKTLIMALLRQVFGPGAE   64 (365)
Q Consensus        37 lll~Gp~-G~GKTtla~~la~~l~~~~~~   64 (365)
                      ++++|-. |+||||++-.+|..+...+..
T Consensus         4 ~~i~gt~~GVGKTtvs~~La~aLa~~G~r   32 (224)
T d1byia_           4 YFVTGTDTEVGKTVASCALLQAAKAAGYR   32 (224)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHCCCe
Confidence            8999995 999999999999987655443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.99  E-value=0.06  Score=41.87  Aligned_cols=20  Identities=35%  Similarity=0.529  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 017844           37 LLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~   56 (365)
                      +++.|..|+|||++++.+..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            79999999999999988754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=90.13  E-value=0.052  Score=46.64  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      +.|-|+-|+||||+++.+++.+..
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            789999999999999999987643

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=0.18  Score=36.94  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=16.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      -+++||=.+||||-+-..++..
T Consensus         5 ~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           5 QVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEecccCHHHHHHHHHHHHH
Confidence            4789999999999665544433

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.52  E-value=0.19  Score=35.83  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=21.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFG   60 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~   60 (365)
                      ++|+|-+|+||+|+|+++...++.
T Consensus         9 i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           9 IVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999877754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=89.36  E-value=0.22  Score=41.14  Aligned_cols=23  Identities=43%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Q 017844           35 PHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        35 ~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .++.+.|..|+|||||+.++...
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Confidence            45889999999999999998653

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=89.27  E-value=0.062  Score=46.04  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 017844           37 LLFYGPPGSGKKTLIMALLRQV   58 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (365)
                      +.|-|+-|+||||+++.+++.+
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEECCcCCCHHHHHHHHHHHh
Confidence            7889999999999999998755

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.56  E-value=0.32  Score=40.64  Aligned_cols=43  Identities=21%  Similarity=0.284  Sum_probs=36.7

Q ss_pred             CceEEEEeCCC-CCCHHHHHHHHHHHhhhcCceeEEEEecCCCc
Q 017844          130 GFKVLVLNEVD-KLSREAQHSLRRTMEKYSASCRLILCCNSSSK  172 (365)
Q Consensus       130 ~~~vliiDE~~-~L~~~~~~~Ll~~le~~~~~~~~Il~t~~~~~  172 (365)
                      ...+++|||++ .|.+..+..+.+.|++...+..+|++|+++.-
T Consensus       241 ~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~  284 (308)
T d1e69a_         241 PSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV  284 (308)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG
T ss_pred             cCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHH
Confidence            45799999995 68999999999999988778899998888763

>d2qw6a1 a.80.1.2 (A:241-328) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: MgsA/YrvN C-terminal domain-like
domain: Uncharacterized protein EfaeDRAFT 0938
species: Enterococcus faecium [TaxId: 1352]

Probab=87.37  E-value=0.0046  Score=41.53  Aligned_cols=46  Identities=13%  Similarity=0.013  Sum_probs=28.3

Q ss_pred             HHhhhhhHHHHhhhcccCCCCCccccccccccccchhcccCCCcccC
Q 017844          318 AYYVSISFQILFIVPLVDFPSPLECSAQAAYIQPPLIRANSDPVALH  364 (365)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (365)
                      +.|++.++-.=-+.++..+...++++ +|.|+.++|++++|+++|+.
T Consensus         5 SA~~KSiRgSD~dAAlywlarml~~G-D~~~i~RRLi~~AsEDIGlA   50 (88)
T d2qw6a1           5 SAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLG   50 (88)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHcCCccHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHhhcc
Confidence            33444433333333444444566677 88999999999999999974

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=87.30  E-value=0.84  Score=37.62  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcHHHHHHHHHH
Q 017844           36 HLLFYGPPGSGKKTLIMALLR   56 (365)
Q Consensus        36 ~lll~Gp~G~GKTtla~~la~   56 (365)
                      .+++.|++|+|||+++..++.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHh
Confidence            378999999999999977654

>d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: MgsA/YrvN C-terminal domain-like
domain: Uncharacterized protein NTHI1458
species: Haemophilus influenzae [TaxId: 727]

Probab=86.84  E-value=0.33  Score=37.32  Aligned_cols=106  Identities=10%  Similarity=0.038  Sum_probs=65.8

Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhh
Q 017844          258 FEIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLD---AEIKHEVCHWAAYYV----SISFQILFI  330 (365)
Q Consensus       258 ~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~  330 (365)
                      ++++++..++-+..+-+.+.=++-.++..|.+|..|.+.+...-.+.+.   +.........+..++    .+-...|.+
T Consensus         5 Yd~iSA~~KSiRgSD~dAaly~larml~~GeDp~~i~RRl~~~AsEDIGlAdp~al~~a~~~~~a~~~iG~PE~~i~Laq   84 (184)
T d3bgea1           5 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQ   84 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCChHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence            4455555544444455666666778889999999999999988777543   222222323332222    223445555


Q ss_pred             hcccCC-CCCccccccccc--cccchhcccCCCcccC
Q 017844          331 VPLVDF-PSPLECSAQAAY--IQPPLIRANSDPVALH  364 (365)
Q Consensus       331 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  364 (365)
                      . ++++ .+||.|++-.++  ....+-.-.+.||++|
T Consensus        85 a-viyLA~aPKSNs~y~A~~~A~~~v~~~~~~~VP~h  120 (184)
T d3bgea1          85 A-IIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPH  120 (184)
T ss_dssp             H-HHHHHHSCCCCHHHHHHHHHHHHHHHSCCCCCCGG
T ss_pred             H-HHHHHhCCcchHHHHHHHHHHHHHHhcCCCCCChh
Confidence            4 4444 799999998888  4444445566788877

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.79  E-value=0.34  Score=38.99  Aligned_cols=25  Identities=20%  Similarity=0.200  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGP   61 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~   61 (365)
                      +++.+|+|+|||+.+...+..+...
T Consensus        61 ~~i~apTGsGKT~~~~~~~~~~~~~   85 (237)
T d1gkub1          61 FAATAPTGVGKTSFGLAMSLFLALK   85 (237)
T ss_dssp             EECCCCBTSCSHHHHHHHHHHHHTT
T ss_pred             EEEEecCCChHHHHHHHHHHHHHHh
Confidence            8999999999998776655544333

>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: MgsA/YrvN C-terminal domain-like
domain: Uncharacterized protein YrvN
species: Prochlorococcus marinus [TaxId: 1219]

Probab=86.60  E-value=0.3  Score=36.79  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=59.2

Q ss_pred             HHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhhh
Q 017844          259 EIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLD---AEIKHEVCHWAAYYV----SISFQILFIV  331 (365)
Q Consensus       259 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~  331 (365)
                      +++++..++-+..+-+.+.=++-.++..|.+|..|.+.+...-.+.+.   +.........+.-++    .+-...|.+.
T Consensus         4 d~iSA~~KSiRgSD~dAAly~larml~~Gedp~~i~RRli~~AsEDIGlAdp~Al~~a~aa~~a~~~iG~PE~~i~LAqa   83 (163)
T d3ctda1           4 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQA   83 (163)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            444444443333455667677778899999999999999988887543   222222222222222    2223444544


Q ss_pred             cccCCCCCccccccccc-cccchhcccCCCcccC
Q 017844          332 PLVDFPSPLECSAQAAY-IQPPLIRANSDPVALH  364 (365)
Q Consensus       332 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  364 (365)
                      .+.-..+||.|++-..+ -...+-.-.+.||++|
T Consensus        84 viyLA~aPKSNs~ya~~~A~~~v~~~~~~~VP~h  117 (163)
T d3ctda1          84 SLYLAISPKSNSTKSIFKAMEAIKATNVSLVPNH  117 (163)
T ss_dssp             HHHHHHSCCCCGGGHHHHHHHHHC-----CCCGG
T ss_pred             HHHHHcCCcccHHHHHHHHHHHHHhcCCCCCCHH
Confidence            33334789999886555 3333445567778887

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.17  E-value=0.12  Score=43.59  Aligned_cols=15  Identities=47%  Similarity=0.891  Sum_probs=14.1

Q ss_pred             EEEECCCCCcHHHHH
Q 017844           37 LLFYGPPGSGKKTLI   51 (365)
Q Consensus        37 lll~Gp~G~GKTtla   51 (365)
                      .+|.|.+|||||||.
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            799999999999986

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.29  E-value=0.18  Score=42.47  Aligned_cols=30  Identities=23%  Similarity=0.188  Sum_probs=21.8

Q ss_pred             hccceeEEecCCCHHHHHHHHHHHHHHcCC
Q 017844          178 RSRCLNIRINSPTEEQIVKVLEFIAKKEGL  207 (365)
Q Consensus       178 ~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~  207 (365)
                      .|-|.--.|-+.....-.++|..++.+.+.
T Consensus       178 fs~cfg~PFl~~~p~~ya~lL~~ki~~~~~  207 (313)
T d2olra1         178 FSACFGAAFLSLHPTQYAEVLVKRMQAAGA  207 (313)
T ss_dssp             ECGGGCGGGCSSCHHHHHHHHHHHHHHHTC
T ss_pred             eeeccccccccccHHHHHHHHHHHHHhcCC
Confidence            345555667778888888888888877554

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.61  E-value=0.35  Score=39.64  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=22.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      +.|+|.=|+||||++-.+|..+-..+
T Consensus         4 Iai~gKGGvGKTT~a~nLA~~LA~~G   29 (269)
T d1cp2a_           4 VAIYGKGGIGKSTTTQNLTSGLHAMG   29 (269)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHTTT
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHhCC
Confidence            56789999999999999999876544

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.19  E-value=0.22  Score=42.59  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=26.0

Q ss_pred             CCcccc----CHHHHHH-----HHHHHHcCCCCeEEEECCCCCcHHHHH
Q 017844           12 LDQVIV----HQDIAQN-----LKKLVTEQDCPHLLFYGPPGSGKKTLI   51 (365)
Q Consensus        12 ~~~iig----~~~~~~~-----l~~~l~~~~~~~lll~Gp~G~GKTtla   51 (365)
                      |+.+.+    |+++.+.     +...+.+|....++-||..|+|||..+
T Consensus        54 fD~Vf~~~~~q~~vy~~~~~plv~~~~~~G~n~~i~aYGqTGSGKTyTm  102 (330)
T d1ry6a_          54 VDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM  102 (330)
T ss_dssp             CSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred             CCeecCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeeeccccccceee
Confidence            555554    4555432     333444465545999999999999986

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.29  E-value=0.24  Score=41.74  Aligned_cols=32  Identities=16%  Similarity=0.014  Sum_probs=22.1

Q ss_pred             HHhccceeEEecCCCHHHHHHHHHHHHHHcCC
Q 017844          176 AIRSRCLNIRINSPTEEQIVKVLEFIAKKEGL  207 (365)
Q Consensus       176 ~l~sR~~~i~~~~~~~~~~~~iL~~~~~~~~~  207 (365)
                      +..|-|.-=.|-+.....-.++|..++.+.+.
T Consensus       177 ~tfs~cfg~PFl~~~p~~ya~~L~~~i~~~~~  208 (323)
T d1ii2a1         177 PIFSSCFGGPFLVRHATFYGEQLAEKMQKHNS  208 (323)
T ss_dssp             EEECGGGCGGGCCSCHHHHHHHHHHHHHHHTC
T ss_pred             cceeccccccccccChHHHHHHHHHHHHhcCc
Confidence            34455655567777888888888888876554

>d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: MgsA/YrvN C-terminal domain-like
domain: Uncharacterized protein EfaeDRAFT 0938
species: Enterococcus faecium [TaxId: 1352]

Probab=83.23  E-value=0.56  Score=36.06  Aligned_cols=105  Identities=15%  Similarity=-0.006  Sum_probs=63.0

Q ss_pred             HHHHHHHhccChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhh----hhhHHHHhhh
Q 017844          259 EIASDIMQEQSPKRLFQVRGKLYELLLNCVPPVVVLKRLLYELLKRLD---AEIKHEVCHWAAYYV----SISFQILFIV  331 (365)
Q Consensus       259 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~~il~~l~~~l~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~  331 (365)
                      +++++..++-+..+-+.+.-++..+++.| +|..|.+.+...-.+.+.   +.........+..++    .+-...|.+.
T Consensus         5 d~iSA~~KSiRgSD~daAly~larml~~G-d~~~i~RRL~~~AsEDIGlAdp~al~~a~~a~~a~~~iG~PE~~i~Laqa   83 (186)
T d2r9ga1           5 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADV   83 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CchHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            44444444333355567777788889999 999999998888777543   333333333332222    1223445554


Q ss_pred             cccCCCCCccccccccc-cccchhcc-cCCCcccC
Q 017844          332 PLVDFPSPLECSAQAAY-IQPPLIRA-NSDPVALH  364 (365)
Q Consensus       332 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~  364 (365)
                      .+.-..+||.|++-.++ --+..++. .+.||++|
T Consensus        84 viyLA~apKSns~y~A~~~A~~~v~~~~~~~VP~h  118 (186)
T d2r9ga1          84 VVDLCLSPKSNSAYMALDAALADIREGKAGDVPDH  118 (186)
T ss_dssp             HHHHHHSCCCCHHHHHHHHHHHHHHTTCCCCCCGG
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHhcCCCccCHH
Confidence            33334799999998888 33444433 45688887

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.20  E-value=0.49  Score=40.14  Aligned_cols=21  Identities=29%  Similarity=0.419  Sum_probs=17.6

Q ss_pred             cCCCCeEEEECCCCCcHHHHH
Q 017844           31 EQDCPHLLFYGPPGSGKKTLI   51 (365)
Q Consensus        31 ~~~~~~lll~Gp~G~GKTtla   51 (365)
                      .|....++-||+.|+|||..+
T Consensus        73 ~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          73 EGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             TTCCEEEEEECSTTSSHHHHH
T ss_pred             cCCCcceeeecccCCCCceec
Confidence            565555999999999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.28  E-value=0.62  Score=38.75  Aligned_cols=37  Identities=16%  Similarity=0.412  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHc------CCCCeEEEECCCCCcHHHHHHHHHHH
Q 017844           21 IAQNLKKLVTE------QDCPHLLFYGPPGSGKKTLIMALLRQ   57 (365)
Q Consensus        21 ~~~~l~~~l~~------~~~~~lll~Gp~G~GKTtla~~la~~   57 (365)
                      .++.|...+..      ...|-+++.|.-++||||++.++.+.
T Consensus         7 ~~~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1           7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhCC
Confidence            34555554432      23455899999999999999999873

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=81.63  E-value=0.68  Score=39.56  Aligned_cols=40  Identities=25%  Similarity=0.460  Sum_probs=28.0

Q ss_pred             CCcccc----CHHHHHHHHHHHH---cCCCCeEEEECCCCCcHHHHH
Q 017844           12 LDQVIV----HQDIAQNLKKLVT---EQDCPHLLFYGPPGSGKKTLI   51 (365)
Q Consensus        12 ~~~iig----~~~~~~~l~~~l~---~~~~~~lll~Gp~G~GKTtla   51 (365)
                      |+.+.+    |+++.+.+...+.   .|....++-||..|+|||..+
T Consensus        54 FD~vf~~~~~q~~vy~~v~~~v~~~l~G~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          54 FDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             ESEEECTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred             cCeEeCCCCCHHHHHHHhhhhhcchhcccccceeeeeccCCcccccc
Confidence            666655    5666666655554   354334899999999999876

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.17  E-value=0.56  Score=37.18  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      .+..|..|+||||++..+|..+....
T Consensus         5 av~s~KGGvGKTtia~nlA~~la~~g   30 (232)
T d1hyqa_           5 TVASGKGGTGKTTITANLGVALAQLG   30 (232)
T ss_dssp             EEEESSSCSCHHHHHHHHHHHHHHTT
T ss_pred             EEECCCCCChHHHHHHHHHHHHHhCC
Confidence            35568899999999999998775443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.96  E-value=0.46  Score=39.42  Aligned_cols=26  Identities=31%  Similarity=0.416  Sum_probs=21.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCC
Q 017844           37 LLFYGPPGSGKKTLIMALLRQVFGPG   62 (365)
Q Consensus        37 lll~Gp~G~GKTtla~~la~~l~~~~   62 (365)
                      +.++|.=|+||||++-.+|..+...+
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA~~G   30 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALAEMG   30 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            56799999999999988888775443

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=80.44  E-value=0.35  Score=41.88  Aligned_cols=40  Identities=33%  Similarity=0.471  Sum_probs=26.1

Q ss_pred             CCcccc----CHHHHHHHHHHHH---cCCCCeEEEECCCCCcHHHHH
Q 017844           12 LDQVIV----HQDIAQNLKKLVT---EQDCPHLLFYGPPGSGKKTLI   51 (365)
Q Consensus        12 ~~~iig----~~~~~~~l~~~l~---~~~~~~lll~Gp~G~GKTtla   51 (365)
                      |+.+.+    |+++.+.+...+.   .|....++-||+.|+|||..+
T Consensus        46 FD~vf~~~~~q~~vy~~v~~lv~~~l~G~n~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          46 YDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             CSEEECTTCCHHHHHHTTTHHHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred             CCeecCCCCCHHHHHHHHHHHHHHHhcCCceeeeccccCCCCccccc
Confidence            666643    4555554433333   454444999999999999985