Citrus Sinensis ID: 017845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGDPDSSFEETSATEDVNGRDVEMEDELANDLTGDVFADYDIEVTKEGEAISEYLSLLDSVAGIAIEKARN
Secondary Structure (PSIPRED)
ccHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEHHHHHHcHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHcccccccHHHcccHHHcccccccccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVWCYFMLRDISWLSEAGIRLRKAREGierahgkdssrvrllqagrhpELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFqlqvpdesLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQkrygltplkkaVDIEKIKELVSIGFEKELVAEALRRNENDSQkalddltnpesnsAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLlgepgsnptaaannnastsismpnngepsssinnenvegdpdssfeetsatedvngrdvemEDELandltgdvfadydIEVTKEGEAISEYLSLLDSVAGIAIEKARN
Flexible Loop (DISEMBL)
MVWCYFMLRDISWLSEAGIRLRKAregierahgkdssrvrllqAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIdflveekakrvkeredneqrrkeimeqkrygltplkkavdieKIKELVSIGFEKELVAEALRRNENDSqkalddltnpesnsAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGDPDSSFEETsatedvngrdVEMEDELANDLTGDVFADYDIEVTKEGEAISEYLslldsvagiaiekarn
Low Complexity Region (SEG)
MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLveekakrvkereDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGsnptaaannnastsisMPNNGEPSSSINNENVEGDPDSSFEETSATEDVNGRDVEMEDELANDLTGDVFADYDIEVTKEGEAISEYLSLLDSVAGIAIEKARN
Disordered region (IsUnstruct)
*VWCYFMLRDISWLSEAGIRLRKA****************LLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV*************************YGLTPLKKAVDIEKIKELVSIGFEKELVA***************************LYI*******CRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLL*****************************************************************NDLTGDVFADYDIEVTKEGEAISEYLSLLDSVAGIAI*****
Disordered Region (DISOPRED)
MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDK***********FFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA********************************IEKIKELVSIGFEKELVAEALRRNENDSQKALDDLTNPES****************************AMGFERPRVIEACRAGGDDIHQIMLQ*****************************************************************LANDLTGDVFADYDIEVTKEGEAISEYLS***************
Disordered Region (DISEMBL)
MVWCYFMLRDISWLSEAGIRLRKAREGI*********RVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAK***********RKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLTNPESNSAIQLYIES*********ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNE*******************NGRDVEMEDELANDLTGDVFADYDIEVTKEGEAISEYLSLLDSVAGIAIEKARN
Disordered Region (DISPRO)
MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLTNPESNS***LYI*S***KRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEP*****************************************************DVEMEDELANDLTGDVFADYDIEVTKEGEAISEYLSLLDSVAGIAIE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKxxxxxxxxxxxxxxxxxxxxxRYGLTPLKKAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGDPDSSFEETSATEDVNGRDVEMEDELANDLTGDVFADYDIEVTKEGEAISEYLSLLDSVAGIAIEKARN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
P54729	614	NEDD8 ultimate buster 1 O	yes	no	0.868	0.516	0.260	2e-17
Q9Y5A7	615	NEDD8 ultimate buster 1 O	yes	no	0.863	0.512	0.252	3e-13

>sp|P54729|NUB1_MOUSE NEDD8 ultimate buster 1 OS=Mus musculus GN=Nub1 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 168/368 (45%), Gaps = 51/368 (13%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           +VWCYF L  +  L +A  +L  A++  +  +G++  R+  ++     E  L LR+ LL+
Sbjct: 286 IVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQ 345

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           G+  YHSG  ++AR  L  A+  F +L +    +  ++ +GF  Q+A+  LR C  +V  
Sbjct: 346 GIQNYHSGNGEEAREYLNKARQLFKELYIDPSKVHNLLQLGFTAQEARLGLRACDGNVDH 405

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           A   +                RR+E+ + ++      K+   +E +  L  +G+  +   
Sbjct: 406 AATHI--------------SNRREELAQIRK--EEKEKRRRRLENVNTLRGMGYSTQAAK 449

Query: 181 EAL---RRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAK--IEQLVAMGFE 235
           +AL   R N +D+ K L  L+NP     +    ++      RQA+ ++  I QLV MGF+
Sbjct: 450 QALHQARGNLDDALKVL--LSNPH----MWWLQDADPENNSRQASPSQESINQLVYMGFD 503

Query: 236 RPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVE 295
                 A R  G ++ Q+  Q L   G               S+P    P    + E+  
Sbjct: 504 TVVAEAALRVFGGNV-QLAAQTLAHHGG--------------SLP----PDLQFSGEDSS 544

Query: 296 GDPDSSFEETSATEDVNGRDVEMEDELANDLTGDVF---ADY-DIEVTKEGEAISEYLSL 351
             P +S  +++ T   +  D +ME E  N++  D+     DY D  +  E   I+EYLS 
Sbjct: 545 PTPSTSPSDSAGTSSAST-DEDMETEAVNEILEDIPEHEEDYLDSTLEDEEVIIAEYLSY 603

Query: 352 LDSVAGIA 359
           ++S++  A
Sbjct: 604 VESISSAA 611

Specific down-regulator of the NEDD8 conjugation system. Recruits NEDD8, UBD, and their conjugates to the proteasome for degradation.
Mus musculus (taxid: 10090)

>sp|Q9Y5A7|NUB1_HUMAN NEDD8 ultimate buster 1 OS=Homo sapiens GN=NUB1 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 156/360 (43%), Gaps = 45/360 (12%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           +VWCYF L  +  L +A  +L  A++  +  +G++  R+  ++     E  L LR+ LL+
Sbjct: 287 IVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQ 346

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           G+  YHSG   +A   L  A+  F +L +    +  ++ +GF  Q+A+  LR C  +V  
Sbjct: 347 GIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLGLRACDGNVDH 406

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           A   +                RR+E+ + ++      KK   +E I+ L  +G+      
Sbjct: 407 AATHIT--------------NRREELAQIRKEEKE--KKRRRLENIRFLKGMGYSTHAAQ 450

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAK--IEQLVAMGFERPR 238
           + L     +  +AL  L    SN  +    +S      RQ + ++  I++LV MGF+   
Sbjct: 451 QVLHAASGNLDEALKILL---SNPQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALV 507

Query: 239 VIEACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGDP 298
              A R    ++ Q+  Q L          A+N  S    +P + E S S         P
Sbjct: 508 AEAALRVFRGNV-QLAAQTL----------AHNGGSLPPELPLSPEDSLS---------P 547

Query: 299 DSSFEETSATEDVNGRDVEMEDELANDLTGDVF---ADY-DIEVTKEGEAISEYLSLLDS 354
            ++    SA       D +ME E  N++  D+     DY D  +  E   I+EYLS +++
Sbjct: 548 PATSPSDSAGTSSASTDEDMETEAVNEILEDIPEHEEDYLDSTLEDEEIIIAEYLSYVEN 607

Specific down-regulator of the NEDD8 conjugation system. Recruits NEDD8, UBD, and their conjugates to the proteasome for degradation. Isoform 1 promotes the degradation of NEDD8 more efficiently than isoform 2.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
255583086	559	NEDD8 ultimate buster, putative [Ricinus	0.953	0.622	0.662	1e-120
224120288	566	predicted protein [Populus trichocarpa]	0.967	0.623	0.634	1e-117
224142489	578	predicted protein [Populus trichocarpa]	0.978	0.617	0.633	1e-115
388521561	557	unknown [Lotus japonicus]	0.934	0.612	0.610	1e-113
356556537	555	PREDICTED: uncharacterized protein LOC10	0.953	0.627	0.631	1e-113
225463067	552	PREDICTED: NEDD8 ultimate buster 1 [Viti	0.945	0.625	0.656	1e-112
356530579	556	PREDICTED: NEDD8 ultimate buster 1-like	0.947	0.622	0.634	1e-112
20198241	538	hypothetical protein [Arabidopsis thalia	0.964	0.654	0.532	1e-105
42569006	562	ubiquitin-associated (UBA)/TS-N domain-c	0.964	0.626	0.532	1e-104
297831800	570	ubiquitin-associated /TS-N domain-contai	0.956	0.612	0.536	1e-104

>gi|255583086|ref|XP_002532310.1| NEDD8 ultimate buster, putative [Ricinus communis] gi|223527979|gb|EEF30062.1| NEDD8 ultimate buster, putative [Ricinus communis]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/356 (66%), Positives = 288/356 (80%), Gaps = 8/356 (2%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           MVWCYFMLRDI+WLS AG+RL KAREG+ERAHGKDSSR RLLQAGR  EL+L+LR+ELLE
Sbjct: 201 MVWCYFMLRDIAWLSVAGVRLEKAREGLERAHGKDSSRFRLLQAGRSSELSLYLRLELLE 260

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           GV AYHSGQFDK R  LTSAQ +FFQL+VPDE+LS+VM MGFKE DAKRALR+ +QD+ S
Sbjct: 261 GVVAYHSGQFDKCRKYLTSAQERFFQLRVPDEALSIVMGMGFKENDAKRALRMSNQDIES 320

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           AI+FLVEEK ++ K+ ED+ +RR EI EQ+RYG T LKKAVD++++KELVS+GFEKEL A
Sbjct: 321 AINFLVEEKERKAKKMEDDIRRRAEIREQRRYGETALKKAVDLQRLKELVSLGFEKELAA 380

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
           EALRRNENDS+KALDDLTNP++N+AIQ  IESRKRKR ++    KIEQLV+MGFER RV+
Sbjct: 381 EALRRNENDSEKALDDLTNPQTNTAIQHDIESRKRKRNQRKVGTKIEQLVSMGFERSRVV 440

Query: 241 EACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGDPDS 300
           EA RAGG  + Q M QLL    +NPTA+A N  S SIS P + +   S+N +N+  D D+
Sbjct: 441 EAVRAGG-SVEQAMQQLLTGSMTNPTASATN--SDSISRPTS-DAVDSLNQDNLSDDNDT 496

Query: 301 SFEETSATEDVNGRDVEMEDELANDLT-GDVFADYDIEVTKEGEAISEYLSLLDSV 355
             E  SA+E V  RD+EMED +A ++  GD  +DYDIEVTKEGEAI+EY++LL+SV
Sbjct: 497 --EGPSASE-VEQRDLEMEDTIAEEIAKGDALSDYDIEVTKEGEAINEYMALLNSV 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120288|ref|XP_002331011.1| predicted protein [Populus trichocarpa] gi|222872941|gb|EEF10072.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/369 (63%), Positives = 292/369 (79%), Gaps = 16/369 (4%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           MVWCYFML+DI+WLS AG+RL KAREG+ERAHGKDSSR RLLQAG   ELAL+LR+ELLE
Sbjct: 199 MVWCYFMLQDIAWLSVAGLRLEKAREGLERAHGKDSSRFRLLQAGCSSELALYLRLELLE 258

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           GV AYHSGQFDK+R  LTSAQAKFFQLQVPDE+LS+VMS+GF EQDAKRALR+ +QDV S
Sbjct: 259 GVVAYHSGQFDKSRKFLTSAQAKFFQLQVPDEALSVVMSIGFGEQDAKRALRMSNQDVQS 318

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           A++FLV E+ KR ++RED+ +RR EI +QKRYG+TPLKKAVD++K+ ELVSIGFEKEL A
Sbjct: 319 AVNFLVLEREKREQKREDDIRRRNEIKQQKRYGVTPLKKAVDLQKLTELVSIGFEKELAA 378

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
           EALR+NEN SQ+ALDDLTNPE+N+ +Q  IESRKRKR ++A DA +EQLV+MGFER RVI
Sbjct: 379 EALRKNENGSQEALDDLTNPEANTELQRAIESRKRKRQQRATDATVEQLVSMGFERSRVI 438

Query: 241 EACRAGGDDIHQIMLQLLGEPGSNPTAAA-----------NNNASTSISMPNNG-EPSSS 288
            A +AGG  + ++M QLL  P ++ TAAA           NNNAST ++  +N   P S+
Sbjct: 439 GAVQAGG-SLEEVMHQLLTHPQADTTAAADDSSNAHDSSGNNNASTDLNANDNACAPDST 497

Query: 289 INNENVEG-DPDS-SFEETSATEDVNGRDVEMEDELANDLT-GDVFADYDIEVTKEGEAI 345
             N  VE   PD+   + ++       RD+EMEDE+A++LT GD  +DY+I+VT+EG+AI
Sbjct: 498 PTNPAVENLSPDTLGIDNSNEGPSAEQRDLEMEDEIADELTRGDALSDYNIDVTQEGDAI 557

Query: 346 SEYLSLLDS 354
           +EYL+LLDS
Sbjct: 558 NEYLALLDS 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142489|ref|XP_002324589.1| predicted protein [Populus trichocarpa] gi|222866023|gb|EEF03154.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/368 (63%), Positives = 290/368 (78%), Gaps = 11/368 (2%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           MVWCYFMLRDI+W++ AG+RL+KAREG+ERAHGKDSSR RLLQAGR  ELAL+LR+ELLE
Sbjct: 207 MVWCYFMLRDIAWIAVAGLRLKKAREGLERAHGKDSSRFRLLQAGRTSELALYLRLELLE 266

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           GV AYHSGQF+K+R  L SAQ KFFQLQVPDE+LSLVMSMGF E DAKRALR+ +QD+ S
Sbjct: 267 GVVAYHSGQFNKSRKFLASAQEKFFQLQVPDEALSLVMSMGFGEWDAKRALRMSNQDIQS 326

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           A++FLV E+ KR ++RED+ +RR EIMEQKRYG+TPLKKAVD++++ E+VSIGFEKEL A
Sbjct: 327 AVNFLVVEREKREQKREDDIRRRNEIMEQKRYGVTPLKKAVDLQRLTEVVSIGFEKELAA 386

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
           EALR+NEND+QKALDDLTNPE+N+A+Q  IE RKR+R ++A DA IE+LV+MGFER RVI
Sbjct: 387 EALRKNENDTQKALDDLTNPEANTALQRNIELRKRRRQQRATDATIERLVSMGFERSRVI 446

Query: 241 EACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNN--GEPSSSINNENVEG-D 297
            A +AGG  + Q M QLL    ++ T AA N+A+  +S  NN    P S+  +  ++  D
Sbjct: 447 GAVQAGG-SLEQAMHQLLTYSRADTTVAAENSANAHVSAVNNNASAPDSTPTDLALDNLD 505

Query: 298 PDS-----SFEETSATEDVNGRDVEMEDELANDLT-GDVFADYDIEVTKEGEAISEYLSL 351
           PD+     S E  SA E +  RDVEME E+A++L  GD  +DYDIEV KEGEAI+EYL+L
Sbjct: 506 PDALDIDCSNEGPSAAE-IEQRDVEMEGEIADELARGDALSDYDIEVAKEGEAINEYLAL 564

Query: 352 LDSVAGIA 359
           L S  G +
Sbjct: 565 LASADGTS 572

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521561|gb|AFK48842.1| unknown [Lotus japonicus]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/365 (61%), Positives = 275/365 (75%), Gaps = 24/365 (6%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           MVWCYFM+RDI  LS+AG RL  AR GIERAHGKDS R+R+LQ G +PELALHLRMELLE
Sbjct: 193 MVWCYFMIRDIRCLSDAGKRLEMARAGIERAHGKDSLRLRILQGGCYPELALHLRMELLE 252

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           GV AYH+GQ +K+RN L SA+AKF QLQVPDE+LSLVMSMGFKE+ AKRALR+ +QDVGS
Sbjct: 253 GVVAYHTGQLEKSRNVLASARAKFAQLQVPDEALSLVMSMGFKERGAKRALRMNNQDVGS 312

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           AIDFLV EKAK++++RE++ +RR EI EQK YG+TP KKAVDI+++KELVSIGFEKEL A
Sbjct: 313 AIDFLVAEKAKKMQKREEDIRRRNEIREQKSYGMTPSKKAVDIDRLKELVSIGFEKELAA 372

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
           EALRRNEND+Q+ALDDLTNPE+N A+Q  IESRKRKR +Q  D+ IE +V MGFER RV+
Sbjct: 373 EALRRNENDTQQALDDLTNPETNLALQDNIESRKRKRQKQETDSAIENVVQMGFERSRVV 432

Query: 241 EACRAGGDDIHQIMLQL--LGEPGS---------NPTAAANNNASTSISMPNNGEPSSSI 289
            A  AGG ++ Q++ +L  L E GS         N + A N +AS+S  +P++   S  +
Sbjct: 433 AAFEAGG-NLEQVLQRLTALPEAGSTSENIQPQVNSSVAPNGSASSSAPLPDD-VISDVL 490

Query: 290 NNENVEGDPDSSFEETSATEDVNGRDVEMEDELANDLT-GDVFADYDIEVTKEGEAISEY 348
           +  N   DP  + E          RDVEMEDEL+ D+   D   DYDIEV  EG+AI+EY
Sbjct: 491 DQMNGVEDPSVAEE----------RDVEMEDELSADIAKSDALDDYDIEVDIEGQAITEY 540

Query: 349 LSLLD 353
           L+LL+
Sbjct: 541 LTLLE 545

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556537|ref|XP_003546581.1| PREDICTED: uncharacterized protein LOC100804062 [Glycine max]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/358 (63%), Positives = 283/358 (79%), Gaps = 10/358 (2%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           MVWCYFM+RDI WLS+AG RL  AREGIERAHGKDS R+RLLQ GR+PELALHLR+ELLE
Sbjct: 197 MVWCYFMIRDIKWLSDAGKRLEMAREGIERAHGKDSFRLRLLQGGRYPELALHLRLELLE 256

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           GV AYH+GQF+K++  L SA+ KF QLQVPDE+LSLVMSMGF E+DAKRALR+ +QDVG 
Sbjct: 257 GVVAYHTGQFEKSKQTLASARTKFIQLQVPDEALSLVMSMGFAERDAKRALRMNNQDVGG 316

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           AIDFL EEK K++++RE++ +RR EI EQKRYG+TPLKKAVD+E++KELVSIGF+KEL A
Sbjct: 317 AIDFLAEEKTKKLRKREEDIRRRNEIKEQKRYGMTPLKKAVDLERLKELVSIGFDKELAA 376

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
           EALRRNEND+QKALDDLTNPE+NSA+Q+ IESRKRKR + A D++IE++V MGFER RV+
Sbjct: 377 EALRRNENDTQKALDDLTNPETNSALQVNIESRKRKRQKAARDSEIEKVVQMGFERSRVV 436

Query: 241 EACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGD-PD 299
            A  AGG  + +++ +L  +PG++P     N+AS S    ++  P      +NV+ D   
Sbjct: 437 AAFEAGG-SLDEVLQRLTAQPGTDPMQPRENSASASHGGASSSAPLP----DNVDADLAM 491

Query: 300 SSFEETSATEDVNGRDVEMEDELANDLT-GDVFADYDIEVTKEGEAISEYLSLLDSVA 356
              E+ S TE    RDVEMEDEL+ D+   D  ADYDIEVT EGEAI+EYL+L++S +
Sbjct: 492 YKVEDHSKTEQ---RDVEMEDELSADIAKADALADYDIEVTVEGEAITEYLALVESAS 546

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463067|ref|XP_002268993.1| PREDICTED: NEDD8 ultimate buster 1 [Vitis vinifera] gi|296084548|emb|CBI25569.3| unnamed protein product [Vitis vinifera]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/355 (65%), Positives = 286/355 (80%), Gaps = 10/355 (2%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           MVWCYFMLRDI WLSEAGIRL KAREGIER+HGKD+SRVR+LQ GR+PELALHLR+ELLE
Sbjct: 196 MVWCYFMLRDIRWLSEAGIRLAKAREGIERSHGKDASRVRVLQNGRYPELALHLRLELLE 255

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           GV ++HSGQF+K++  LTSAQAK+FQLQVPDE+LSL+MSMG+KE+++KRALR+ +Q +  
Sbjct: 256 GVVSFHSGQFEKSKKVLTSAQAKYFQLQVPDEALSLLMSMGYKERNSKRALRMSNQQLDL 315

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           AIDFLVEEKAK+ K+RE++ QRR EIMEQKRYG+TPL+KAVD++ +  LVSIGFEKEL A
Sbjct: 316 AIDFLVEEKAKKEKKREEDIQRRNEIMEQKRYGMTPLRKAVDLQSLHMLVSIGFEKELAA 375

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
           EALRRNEND+QKALDDLTNPE+NSAIQL IESRKRKR RQA +A IE+L++MGFER  V+
Sbjct: 376 EALRRNENDTQKALDDLTNPETNSAIQLDIESRKRKRQRQANEAAIEELISMGFERSEVV 435

Query: 241 EACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGDPDS 300
            A +  G    Q +  LLG   +NPTA  ++N   S SMP+     +S+ + +  GD   
Sbjct: 436 TAVQTFGTK-EQALNALLGTAKTNPTAPDDSNVIPSGSMPDE----ASLGSWSEVGDAGG 490

Query: 301 SFEETSATEDVNGRDVEMEDELANDL-TGDVFADYDIEVTKEGEAISEYLSLLDS 354
           S    S+ +    RD+EMEDELA DL  GD F+DYD+EVTKEGEAI+EYL+LL S
Sbjct: 491 S----SSAKKGEERDLEMEDELAEDLRNGDAFSDYDMEVTKEGEAINEYLTLLAS 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530579|ref|XP_003533858.1| PREDICTED: NEDD8 ultimate buster 1-like [Glycine max]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/356 (63%), Positives = 281/356 (78%), Gaps = 10/356 (2%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           MVWCYFM+RDI WLS+AG RL  AREGIERAHGKDS R+RLLQ GR+PELALHLR+ELLE
Sbjct: 198 MVWCYFMIRDIRWLSDAGKRLEMAREGIERAHGKDSFRLRLLQVGRYPELALHLRLELLE 257

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           GV AYH GQ +K++  L SA+ KF QLQVPDE+LSLVMSMGF E+DAKRALR+ +QDVG 
Sbjct: 258 GVVAYHIGQLEKSKKTLASARTKFIQLQVPDEALSLVMSMGFVERDAKRALRMNNQDVGG 317

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           AIDFL EEKAK++++RE++ +RR EI EQK+YG+TPLKKAVD+E++KELVSIGF+KEL A
Sbjct: 318 AIDFLAEEKAKKLQKREEDIRRRNEIKEQKQYGMTPLKKAVDLERLKELVSIGFDKELAA 377

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
           EALRRNEND+QKALDDLTNPE+NSA+Q+ IESRKRKR +QA D++I  +V MGFER RV+
Sbjct: 378 EALRRNENDTQKALDDLTNPETNSALQVNIESRKRKRQKQARDSEIRNVVQMGFERSRVV 437

Query: 241 EACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGD-PD 299
            A  AGG  + +++ +L  +PG++PT    N+AS S    ++  P      +NV+ D   
Sbjct: 438 AAFEAGG-SLEEVLQRLTAQPGTDPTQPQENSASASHGGASSSAPLP----DNVDSDIAM 492

Query: 300 SSFEETSATEDVNGRDVEMEDELANDLT-GDVFADYDIEVTKEGEAISEYLSLLDS 354
           +  E+ S TE    RDVEMEDEL+ D+   D  ADYDIEV  EGEAI+EYLSL++S
Sbjct: 493 NEVEDPSITEQ---RDVEMEDELSADIAKADALADYDIEVNVEGEAITEYLSLVES 545

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20198241|gb|AAM15479.1| hypothetical protein [Arabidopsis thaliana] gi|110735108|gb|ABG89124.1| NUB1 [synthetic construct]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/364 (53%), Positives = 266/364 (73%), Gaps = 12/364 (3%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           +VWCYF+LRDI  LS+AG+RL +AR+G+ERAHGKD SRVRLLQAG+ PE+A++LR+ELLE
Sbjct: 172 IVWCYFLLRDIKCLSDAGVRLVRARKGLERAHGKDLSRVRLLQAGQSPEMAIYLRLELLE 231

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           GV AYH+GQ DKA NAL SA AKF QLQ+PDE+LSLVM MGF+E+DAKRALR+ +QD+ S
Sbjct: 232 GVVAYHTGQNDKALNALKSAHAKFLQLQIPDETLSLVMGMGFQEKDAKRALRLNNQDIAS 291

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           ++DFL+EE+AK+ ++RE + QR+ EI+EQK+YG+TP+KKAVD++ ++ LVSIG+ +EL A
Sbjct: 292 SVDFLIEERAKKAQKREQDLQRQSEILEQKKYGVTPMKKAVDMQMLERLVSIGYARELAA 351

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
           E+LRRNEND QKALD LT+P+ NS IQ YIESRKRKR  Q     + +LV+MGFER +  
Sbjct: 352 ESLRRNENDIQKALDILTDPKVNSTIQAYIESRKRKRQEQLVGISVAELVSMGFERGKAT 411

Query: 241 EACRAGG---DDIHQIMLQLLGEPGS------NPTAAANNNASTSISMPNNGEPSSSINN 291
            A  AGG   D I +++   +  PG+      N T++ NN  + S       E  S + +
Sbjct: 412 SALEAGGSREDTIQRLLSASVANPGTTTTSVINATSSTNNVGAESSGFGGGAEQDSEMKD 471

Query: 292 ENVEGDPDSSFEETSATEDVNGRDVEMEDELANDLTG-DVFADYDIEVTKEGEAISEYLS 350
           E  +   + +   +   E+   RD E+EDE+A+++   D  + YDI + KE EAI+EYL+
Sbjct: 472 ETTDDIANRASTSSDGMEE--ERDSEIEDEIADEIARVDALSAYDINLDKEIEAINEYLA 529

Query: 351 LLDS 354
           +LD+
Sbjct: 530 MLDA 533

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569006|ref|NP_178939.2| ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] gi|63147404|gb|AAY34175.1| At2g12550 [Arabidopsis thaliana] gi|330251110|gb|AEC06204.1| ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/364 (53%), Positives = 266/364 (73%), Gaps = 12/364 (3%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           +VWCYF+LRDI  LS+AG+RL +AR+G+ERAHGKD SRVRLLQAG+ PE+A++LR+ELLE
Sbjct: 196 IVWCYFLLRDIKCLSDAGVRLVRARKGLERAHGKDLSRVRLLQAGQSPEMAIYLRLELLE 255

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           GV AYH+GQ DKA NAL SA AKF QLQ+PDE+LSLVM MGF+E+DAKRALR+ +QD+ S
Sbjct: 256 GVVAYHTGQNDKALNALKSAHAKFLQLQIPDETLSLVMGMGFQEKDAKRALRLNNQDIAS 315

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           ++DFL+EE+AK+ ++RE + QR+ EI+EQK+YG+TP+KKAVD++ ++ LVSIG+ +EL A
Sbjct: 316 SVDFLIEERAKKAQKREQDLQRQSEILEQKKYGVTPMKKAVDMQMLERLVSIGYARELAA 375

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
           E+LRRNEND QKALD LT+P+ NS IQ YIESRKRKR  Q     + +LV+MGFER +  
Sbjct: 376 ESLRRNENDIQKALDILTDPKVNSTIQAYIESRKRKRQEQLVGISVAELVSMGFERGKAT 435

Query: 241 EACRAGG---DDIHQIMLQLLGEPGS------NPTAAANNNASTSISMPNNGEPSSSINN 291
            A  AGG   D I +++   +  PG+      N T++ NN  + S       E  S + +
Sbjct: 436 SALEAGGSREDTIQRLLSASVANPGTTTTSVINATSSTNNVGAESSGFGGGAEQDSEMKD 495

Query: 292 ENVEGDPDSSFEETSATEDVNGRDVEMEDELANDLTG-DVFADYDIEVTKEGEAISEYLS 350
           E  +   + +   +   E+   RD E+EDE+A+++   D  + YDI + KE EAI+EYL+
Sbjct: 496 ETTDDIANRASTSSDGMEE--ERDSEIEDEIADEIARVDALSAYDINLDKEIEAINEYLA 553

Query: 351 LLDS 354
           +LD+
Sbjct: 554 MLDA 557

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831800|ref|XP_002883782.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329622|gb|EFH60041.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/375 (53%), Positives = 269/375 (71%), Gaps = 26/375 (6%)

Query: 1   MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
           +VWCYF+LRD+  LS+AG+RL +AR+G+ERAHGKD SRVRLLQAG+ PE+AL+LR+ELLE
Sbjct: 196 IVWCYFLLRDVKCLSDAGVRLERARKGLERAHGKDLSRVRLLQAGQSPEMALYLRLELLE 255

Query: 61  GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
           GV AYH+GQ+DKA NAL SA AKF QLQ+PDE+LSLVM MGF+E+DAKRALR+ +QD+ S
Sbjct: 256 GVVAYHTGQYDKALNALKSAHAKFLQLQIPDETLSLVMGMGFQEKDAKRALRLNNQDIAS 315

Query: 121 AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
           ++DFL+EE+AKR ++RE + QR++EI+EQK+YG+TP+KKAVD++ ++ LVSIG+ ++L A
Sbjct: 316 SVDFLIEERAKRAQKREQDLQRQQEILEQKKYGVTPMKKAVDMQMLERLVSIGYARDLAA 375

Query: 181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
           E+LRRNEND QKALD LT+P+ NS IQ YIESRKRKR  Q     +++LV+MGFER R  
Sbjct: 376 ESLRRNENDIQKALDILTDPKVNSTIQAYIESRKRKRQEQLVGISVDELVSMGFERGRAT 435

Query: 241 EACRAGGD--DIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINN-ENVEGD 297
            A  AGG+  DI Q +L    E     T+A N  +ST+    N G  SS     E+   +
Sbjct: 436 SALEAGGNREDIIQRLLS-ASEANQGTTSAINATSSTN----NGGAESSGFGGRESTSNE 490

Query: 298 PDSSFEETSATEDVN-----------------GRDVEMEDELANDLTG-DVFADYDIEVT 339
            D   E+ S  +D                    RD E+EDE+A+++   D  + YDI + 
Sbjct: 491 IDGGAEQDSEMKDETRDDIANREGTSSDVGEEERDSEIEDEIADEIAKVDALSAYDINLD 550

Query: 340 KEGEAISEYLSLLDS 354
           KE EAI+EYL++LD+
Sbjct: 551 KEIEAINEYLAMLDA 565

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2060754	562	NUB1 "homolog of human NUB1" [	0.956	0.620	0.514	7.5e-89
FB|FBgn0031161	646	CG15445 [Drosophila melanogast	0.939	0.530	0.224	1.3e-14
ZFIN|ZDB-GENE-060929-724	593	zgc:153057 "zgc:153057" [Danio	0.484	0.298	0.284	5.8e-14
UNIPROTKB|Q9Y5A7	615	NUB1 "NEDD8 ultimate buster 1"	0.506	0.300	0.272	1.1e-13
UNIPROTKB|F1SSM7	563	NUB1 "Uncharacterized protein"	0.506	0.328	0.282	3.5e-13
UNIPROTKB|Q05B69	614	NUB1 "Negative regulator of ub	0.506	0.301	0.277	5.4e-13
MGI|MGI:1889001	614	Nub1 "negative regulator of ub	0.498	0.296	0.285	5.4e-13
UNIPROTKB|E1BZ00	616	NUB1 "Uncharacterized protein"	0.506	0.300	0.267	9.3e-13
RGD|1359489	613	Nub1 "negative regulator of ub	0.498	0.296	0.270	3.5e-12
ZFIN|ZDB-GENE-080212-11	583	nub1 "negative regulator of ub	0.484	0.303	0.264	5.4e-12

TAIR|locus:2060754 NUB1 "homolog of human NUB1" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 189/367 (51%), Positives = 248/367 (67%)

Query:     1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
             +VWCYF+LRDI  LS+AG+RL +AR+G+ERAHGKD SRVRLLQAG+ PE+A++LR+ELLE
Sbjct:   196 IVWCYFLLRDIKCLSDAGVRLVRARKGLERAHGKDLSRVRLLQAGQSPEMAIYLRLELLE 255

Query:    61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
             GV AYH+GQ DKA NAL SA AKF QLQ+PDE+LSLVM MGF+E+DAKRALR+ +QD+ S
Sbjct:   256 GVVAYHTGQNDKALNALKSAHAKFLQLQIPDETLSLVMGMGFQEKDAKRALRLNNQDIAS 315

Query:   121 AIDFLXXXXXXXXXXXXDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
             ++DFL             + QR+ EI+EQK+YG+TP+KKAVD++ ++ LVSIG+ +EL A
Sbjct:   316 SVDFLIEERAKKAQKREQDLQRQSEILEQKKYGVTPMKKAVDMQMLERLVSIGYARELAA 375

Query:   181 EALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI 240
             E+LRRNEND QKALD LT+P+ NS IQ YIESRKRKR  Q     + +LV+MGFER +  
Sbjct:   376 ESLRRNENDIQKALDILTDPKVNSTIQAYIESRKRKRQEQLVGISVAELVSMGFERGKAT 435

Query:   241 EACRAGG---DDIHQIMLQLLGEPGXXXXXXXXXXXXXXXXMPNNGEPSSSINNENVEGD 297
              A  AGG   D I +++   +  PG                  N G  SS       E D
Sbjct:   436 SALEAGGSREDTIQRLLSASVANPGTTTTSVINATSSTN----NVGAESSGFGG-GAEQD 490

Query:   298 PDSSFEETS-----ATEDVNG----RDVEMEDELANDLTG-DVFADYDIEVTKEGEAISE 347
              +   E T      A+   +G    RD E+EDE+A+++   D  + YDI + KE EAI+E
Sbjct:   491 SEMKDETTDDIANRASTSSDGMEEERDSEIEDEIADEIARVDALSAYDINLDKEIEAINE 550

Query:   348 YLSLLDS 354
             YL++LD+
Sbjct:   551 YLAMLDA 557

GO:0005634 "nucleus" evidence=ISM

FB|FBgn0031161 CG15445 [Drosophila melanogaster (taxid:7227)]

 Score = 212 (79.7 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 81/361 (22%), Positives = 156/361 (43%)

Query:     1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
             +VWCYF L++++ L +A  RL +       ++G +  R+  L+    PE AL +R++LL+
Sbjct:   293 IVWCYFCLKNVTQLPDAEHRLARCSRNFGISYGDNLERLYSLKGKDCPERALIMRLKLLQ 352

Query:    61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQD--V 118
             GV  +H    ++A     +A+    +L++ ++ L+L++ MGF+  +A+ ALR C     V
Sbjct:   353 GVIFFHQNLRNQAFECFEAAKTLLNELKINNDQLALLVDMGFEPSEARMALRSCKGGTAV 412

Query:   119 GSAIDFLXXXXXXXXXXXXDNEQRRKEIMEQKRYGLTPLKKA--VDIEKIKELVSIGFEK 176
               A+ F+              + +  E   ++R   +  K    V+   +  L  +GFE 
Sbjct:   413 EQAVQFIHERRQQLKNARM--KYKASERAMERRLKRSNSKDCTWVNPRSVCSLADMGFES 470

Query:   177 ELVAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFER 236
              L   AL+R+ ND  +A++ L   ES+      +              K+ QL+ +GF  
Sbjct:   471 GLATIALQRSNNDILQAVE-LLQTESDE-----LTGASPWFPVTVDTTKLAQLLQLGFNE 524

Query:   237 PRVIEACRAGGDDIHQIMLQLLGEPGXXXXXXXXXXXXXXXXMPNNGEPSSSINNENVEG 296
                  A +   +++ + +  L+                      N G+     +  N  G
Sbjct:   525 NDSRVALQNASNNMEEAIESLMCAIESEEELKAILKHVGRLA-ENGGQNLDGPSTSNASG 583

Query:   297 DPDSSFEETSATEDVNGRDVEMEDELAND-LTGDV-FAD--Y-DIEVTKEGEAISEYLSL 351
                 +         +N   VE+E   A +    D+  +D  Y D+ + +E + ++EY ++
Sbjct:   584 QTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLDLPLIQEEKILTEYFNM 643

Query:   352 L 352
             L
Sbjct:   644 L 644

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-060929-724 zgc:153057 "zgc:153057" [Danio rerio (taxid:7955)]

 Score = 206 (77.6 bits), Expect = 5.8e-14, P = 5.8e-14
 Identities = 55/193 (28%), Positives = 91/193 (47%)

Query:     1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
             MVWCY  L  +  L +A  RL KA +   R +GK+ SR++ ++     E  L LR+ LL+
Sbjct:   290 MVWCYQALEQMQCLDDAWERLGKAEQCFNRCYGKERSRLQQIKGHTGGEEVLFLRLHLLQ 349

Query:    61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
              V  Y  G  + A++ L   + ++ QL +  + L  +   GF EQ+A+  LR C  DV  
Sbjct:   350 TVLMYVKGHKNTAQDKLRDVEHRYSQLNLDPQKLQQLQDKGFSEQEARLGLRACRGDVSE 409

Query:   121 AIDFLXXXXXXXXXXXXDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
             A   +               ++ K++++ K       K+   ++ I  LV +GF++    
Sbjct:   410 AEKLIL------------QRKKEKQVLKLKEQD----KRRRRLQDINTLVELGFKRRDAQ 453

Query:   181 EALRRNENDSQKA 193
              AL +   D  KA
Sbjct:   454 RALHQARGDVDKA 466

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9Y5A7 NUB1 "NEDD8 ultimate buster 1" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 55/202 (27%), Positives = 92/202 (45%)

Query:     1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
             +VWCYF L  +  L +A  +L  A++  +  +G++  R+  ++     E  L LR+ LL+
Sbjct:   287 IVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQ 346

Query:    61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
             G+  YHSG   +A   L  A+  F +L +    +  ++ +GF  Q+A+  LR C  +V  
Sbjct:   347 GIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLGLRACDGNVDH 406

Query:   121 AIDFLXXXXXXXXXXXXDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
             A   +               Q RKE  E+KR  L         E I+ L  +G+      
Sbjct:   407 AATHITNRREELA-------QIRKEEKEKKRRRL---------ENIRFLKGMGYSTHAAQ 450

Query:   181 EALRRNENDSQKALDDL-TNPE 201
             + L     +  +AL  L +NP+
Sbjct:   451 QVLHAASGNLDEALKILLSNPQ 472

GO:0005634 "nucleus" evidence=IEA

GO:0034612 "response to tumor necrosis factor" evidence=IEP

GO:0034341 "response to interferon-gamma" evidence=IEP

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SSM7 NUB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 57/202 (28%), Positives = 97/202 (48%)

Query:     1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
             +VWCYF L  +  L +A  +L  A+   +  +G++  R+  ++     E  L LR+ LL+
Sbjct:   286 IVWCYFRLEQLECLDDAEKKLSLAQTCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQ 345

Query:    61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
             G+  YHSG+ ++AR+ L  A+  F +L +    +  +M +GF  Q+A+  LR C  +V  
Sbjct:   346 GIRNYHSGRGEEARDYLNKARQLFKELYIDPSKVHSLMQLGFTAQEARLGLRACDGNVDH 405

Query:   121 AIDFLXXXXXXXXXXXXDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
             A   +               Q RKE  E+KR  L         E +  L  +G+      
Sbjct:   406 AAAHITNRREELA-------QIRKEEKEKKRRRL---------ENVNCLKGMGYSAHAAR 449

Query:   181 EALRRNENDSQKALDDL-TNPE 201
             +AL +   + ++AL  L +NP+
Sbjct:   450 QALHQAAGNLEEALKILISNPQ 471

GO:0034612 "response to tumor necrosis factor" evidence=IEA

GO:0034341 "response to interferon-gamma" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q05B69 NUB1 "Negative regulator of ubiquitin-like proteins 1" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 5.4e-13, P = 5.4e-13
 Identities = 56/202 (27%), Positives = 97/202 (48%)

Query:     1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
             +VWCYF L  +  L +A  +L+ A+E   + +G++  R+  ++     E  L LR+ LL+
Sbjct:   286 IVWCYFRLGQLECLDDAEKKLKLAQECFRKCYGENHQRLLHIKGNCGKEKVLFLRLYLLQ 345

Query:    61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
             G+  YHSG  ++A   L  A+  F +L +    +  +M +GF  Q+A+  LR C  +V  
Sbjct:   346 GIRNYHSGNGEEAYENLNKARQLFKELYIDPSKVHNLMQLGFSAQEARLGLRACDGNVDH 405

Query:   121 AIDFLXXXXXXXXXXXXDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
             A   +            + +Q +KE  E+K+  L         E I  L  +G+      
Sbjct:   406 AAVHIANRRE-------ELDQIKKEEREKKKRRL---------ENINHLKGMGYSMRAAR 449

Query:   181 EALRRNENDSQKALDDLT-NPE 201
             +AL +   + ++AL  L  NP+
Sbjct:   450 QALHQAAGNLEEALKILLHNPQ 471

GO:0034612 "response to tumor necrosis factor" evidence=IEA

GO:0034341 "response to interferon-gamma" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:1889001 Nub1 "negative regulator of ubiquitin-like proteins 1" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 5.4e-13, P = 5.4e-13
 Identities = 58/203 (28%), Positives = 97/203 (47%)

Query:     1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
             +VWCYF L  +  L +A  +L  A++  +  +G++  R+  ++     E  L LR+ LL+
Sbjct:   286 IVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQ 345

Query:    61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
             G+  YHSG  ++AR  L  A+  F +L +    +  ++ +GF  Q+A+  LR C  +V  
Sbjct:   346 GIQNYHSGNGEEAREYLNKARQLFKELYIDPSKVHNLLQLGFTAQEARLGLRACDGNVDH 405

Query:   121 AIDFLXXXXXXXXXXXXDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
             A   +               Q RKE  E++R  L         E +  L  +G+  +   
Sbjct:   406 AATHISNRREELA-------QIRKEEKEKRRRRL---------ENVNTLRGMGYSTQAAK 449

Query:   181 EAL---RRNENDSQKALDDLTNP 200
             +AL   R N +D+ K L  L+NP
Sbjct:   450 QALHQARGNLDDALKVL--LSNP 470

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

UNIPROTKB|E1BZ00 NUB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 196 (74.1 bits), Expect = 9.3e-13, P = 9.3e-13
 Identities = 54/202 (26%), Positives = 97/202 (48%)

Query:     1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
             +VWCYF L  +  L +A  +L  A+   +R +G++  R+  ++     E  L LR+ LL+
Sbjct:   288 IVWCYFRLEQLDCLDDAEKKLTTAQRCFQRCYGENHERLIDIKGSYGREKVLFLRLYLLQ 347

Query:    61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
             G+  YHSG+  +A   +  A   + +L +  E +  +  +GF EQ+A+ ALR C  +V  
Sbjct:   348 GIGHYHSGREKEAAEYIQKASRLYEELYIDPEKVYRLALLGFSEQEARLALRACHGNVEH 407

Query:   121 AIDFLXXXXXXXXXXXXDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
             A + +            +  + + +I  ++R      K+   +E I  L S+G+ +    
Sbjct:   408 AANLIT-----------NRREEKAQIRREER-----AKRRQRLEDINTLKSMGYSERAAQ 451

Query:   181 EALRRNENDSQKALDD-LTNPE 201
              AL   + +  +A    L NPE
Sbjct:   452 VALHYAQGNLDQAFKYILDNPE 473

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0034341 "response to interferon-gamma" evidence=IEA

GO:0034612 "response to tumor necrosis factor" evidence=IEA

RGD|1359489 Nub1 "negative regulator of ubiquitin-like proteins 1" [Rattus norvegicus (taxid:10116)]

 Score = 191 (72.3 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 55/203 (27%), Positives = 97/203 (47%)

Query:     1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
             +VWCYF L  +  L +A  +L  A+      +G++  R+  ++     E  L LR+ LL+
Sbjct:   285 IVWCYFRLEQLECLDDAEKKLNLAQTCFTNCYGENHQRLVNIKGNCGKEKVLFLRLYLLQ 344

Query:    61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
             G+  YHSG  ++AR  L  A+  F +L +    +  ++ +GF  Q+A+  LR C  +V  
Sbjct:   345 GIRNYHSGNGEEAREYLNKARQLFKELYIDPSKVHNLLQLGFTAQEARLGLRACDGNVDH 404

Query:   121 AIDFLXXXXXXXXXXXXDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
             A   +                RR+E+ + ++      K+   +E +  L  +G+  +   
Sbjct:   405 AATHIS--------------NRREELAQIRKEEKEKRKRR--LESVNTLRGMGYSTQAAK 448

Query:   181 EAL---RRNENDSQKALDDLTNP 200
             +AL   R N +D+ K L  L+NP
Sbjct:   449 QALHQARGNLDDALKIL--LSNP 469

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016567 "protein ubiquitination" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0034341 "response to interferon-gamma" evidence=IEA;ISO

GO:0034612 "response to tumor necrosis factor" evidence=IEA;ISO

ZFIN|ZDB-GENE-080212-11 nub1 "negative regulator of ubiquitin-like proteins 1" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 51/193 (26%), Positives = 90/193 (46%)

Query:     1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLE 60
             +VWCY  L  +  L +A  RL +A    ++ +G+  SR++ ++     E  L LR+ LL+
Sbjct:   280 VVWCYQALEQMECLDDAQERLEEAERCFQKCYGEKQSRLQQIKGHTGGEEVLFLRLHLLQ 339

Query:    61 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGS 120
              V  +  G  ++A + L   +  + QL +  + L  +   GF EQ+A+  LR C  DV  
Sbjct:   340 TVLMFVKGNENQALDKLRDVEHLYSQLNLDPQKLQQLQDKGFSEQEARLGLRACRGDVSE 399

Query:   121 AIDFLXXXXXXXXXXXXDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVA 180
             A + +               ++ K++++ K       K+   ++ I  LV +GFE+    
Sbjct:   400 AENLIS------------QRKKEKQVLKLKEQD----KRRRRLQDINTLVELGFERRDAQ 443

Query:   181 EALRRNENDSQKA 193
              AL +   D  KA
Sbjct:   444 RALHQARGDVDKA 456

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
cd00194	38	cd00194, UBA, Ubiquitin Associated domain	6e-06
pfam00627	37	pfam00627, UBA, UBA/TS-N domain	4e-05
smart00165	37	smart00165, UBA, Ubiquitin associated domain	1e-04
pfam00627	37	pfam00627, UBA, UBA/TS-N domain	0.002

>gnl|CDD|238116 cd00194, UBA, Ubiquitin Associated domain

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 13/37 (35%), Positives = 26/37 (70%)

Query: 91  DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 127
           +E L  ++ MGF  ++A++ALR  + +V  A+++L+E
Sbjct: 2   EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE 38

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins. Length = 38

>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 12/37 (32%), Positives = 24/37 (64%)

Query: 89  VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL 125
           + +E +  +  MGF  ++AK+ALR  + +V  A+++L
Sbjct: 1   IDEELIKQLREMGFSREEAKKALRATNGNVERAVEYL 37

This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280. Length = 37

>gnl|CDD|197551 smart00165, UBA, Ubiquitin associated domain

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 90  PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL 125
            +E +  ++ MGF  ++A +ALR  + +V  A ++L
Sbjct: 1   DEEKIDQLLEMGFSREEALKALRAANGNVERAAEYL 36

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin. Length = 37

>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain

 Score = 34.7 bits (81), Expect = 0.002
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 161 VDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL 197
           +D E IK+L  +GF +E   +ALR    + ++A++ L
Sbjct: 1   IDEELIKQLREMGFSREEAKKALRATNGNVERAVEYL 37

This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280. Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	100.0
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	99.77
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.76
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.71
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	99.65
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	99.6
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.58
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.21
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	99.21
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	99.02
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	99.02
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	98.97
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	98.84
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	98.82
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	97.66
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	97.14
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	95.86
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	95.6
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	95.36
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	95.32
smart00546	43	CUE Domain that may be involved in binding ubiquit	95.23
smart00546	43	CUE Domain that may be involved in binding ubiquit	95.13
PRK09377	290	tsf elongation factor Ts; Provisional	94.52
TIGR00116	290	tsf translation elongation factor Ts. This protein	94.52
PRK12332	198	tsf elongation factor Ts; Reviewed	94.39
KOG2689	290	consensus Predicted ubiquitin regulatory protein [	93.85
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	93.66
CHL00098	200	tsf elongation factor Ts	93.38
PRK06369	115	nac nascent polypeptide-associated complex protein	93.26
PRK12332	198	tsf elongation factor Ts; Reviewed	92.81
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	92.73
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	92.73
PRK09377	290	tsf elongation factor Ts; Provisional	92.66
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	92.54
TIGR00116	290	tsf translation elongation factor Ts. This protein	92.53
KOG2689	290	consensus Predicted ubiquitin regulatory protein [	92.52
CHL00098	200	tsf elongation factor Ts	90.77
PRK06369	115	nac nascent polypeptide-associated complex protein	89.9
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	89.51
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	88.87
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	88.76
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	85.32
COG0264	296	Tsf Translation elongation factor Ts [Translation,	84.61
COG0264	296	Tsf Translation elongation factor Ts [Translation,	83.32
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	81.9
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	81.76
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	81.36
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	81.06
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	80.06

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-77  Score=592.13  Aligned_cols=344  Identities=41%  Similarity=0.640  Sum_probs=282.8

Q ss_pred             CeehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHH
Q 017845            1 MVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSA   80 (365)
Q Consensus         1 ivWcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A   80 (365)
                      |||||||||||+|||||+.||.+|++||.+|||+|++||++|||++|||+|||||||||||||+||+|++++|+++|+.|
T Consensus       214 IVWCYfrLknitcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a  293 (568)
T KOG2561|consen  214 IVWCYFRLKNITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESA  293 (568)
T ss_pred             hhheehhhcccccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCCc
Q 017845           81 QAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKA  160 (365)
Q Consensus        81 ~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  160 (365)
                      .+++.++++|++.++.||+|||.+++||+|||.|+|+|+.|++||+++++...++|+++..+.+++.++++++.++++.|
T Consensus       294 ~~~l~elki~d~~lsllv~mGfeesdaRlaLRsc~g~Vd~AvqfI~erre~laq~R~k~~a~Ere~~~r~k~~n~~~~~w  373 (568)
T KOG2561|consen  294 HAKLLELKINDETLSLLVGMGFEESDARLALRSCNGDVDSAVQFIIERREKLAQKREKDLAREREILERKKYGNTPMKKW  373 (568)
T ss_pred             HHHHHHeeccchHHHHHHHcCCCchHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999777766666667788999999999


Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHhhcCCCcchHHHHHhHHHHhhhhhccccHHHHHHHHhCCCCHHHHH
Q 017845          161 VDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVI  240 (365)
Q Consensus       161 vd~~~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al~~L~~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MGF~~~~A~  240 (365)
                      |++..|..|++|||.+..|..||+.++||+..|+++|++|..  +|..    .++.++.+++..+|.+|++|||++-.|+
T Consensus       374 vn~rs~~rL~~mGyer~la~eaL~r~~Ndi~~aldllq~esd--el~~----n~~~~p~~vd~~~la~Lv~mGF~e~~A~  447 (568)
T KOG2561|consen  374 VNPRSLERLVSMGYERELAAEALRRNENDIQKALDLLQDESD--ELES----NKPKRPEQVDGISLAELVSMGFEEGKAR  447 (568)
T ss_pred             cCHHHHHHHHhcchHhHHHHHHHHhccCcHHHHHHhcCCcch--hhhc----cCCCCCcccchhhHHHHHHhccccchHH
Confidence            999999999999999999999999999999999999987652  2332    2234444578999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHhcCCCCCCcc---ccCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCcccccccccc
Q 017845          241 EACRAGGDDIHQIMLQLLGEPGSNPTA---AANNNASTSISMPNNGEPS------SSINNENVEGDPDSSFEETSATEDV  311 (365)
Q Consensus       241 ~AL~~~~nnve~A~e~Ll~~~~~~~~~---~~~~s~s~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
                      .||+.++||++.|+++|..+....++.   ....++|+...+|+.|...      +.|-+++.+.  -.-.++.+ ....
T Consensus       448 ~ALe~~gnn~~~a~~~L~~s~~n~~~~l~~~~~~t~s~en~gp~ssg~~tsastd~~m~~e~~~~--i~iletv~-~hae  524 (568)
T KOG2561|consen  448 SALEAGGNNEDTAQRLLSASVANEGELLTSVINATSSTENVGPESSGFGTSASTDSEMVDETTDD--IAILETVS-DHAE  524 (568)
T ss_pred             HHHHhcCCcHHHHHHHHHHhCCCCccccccccccccCCCCCCCCcCCCCcccCCCchhhhcCCch--HHHHHhhh-hHHH
Confidence            999999999999999998776653322   1112222222222222111      1121221110  00111111 1233


Q ss_pred             CCCChhHHHHHHhhhc-CCcccccccchhhHHHHHHHHHHHhh
Q 017845          312 NGRDVEMEDELANDLT-GDVFADYDIEVTKEGEAISEYLSLLD  353 (365)
Q Consensus       312 ~~rd~~me~el~~ei~-~d~~~dyD~~l~~E~~~i~eYlsll~  353 (365)
                      ..+|+..++|..+|++ -|+.++||+.|++|+++|+||+.+|+
T Consensus       525 ~eidS~~a~erfned~~~~~leyldl~ldqee~~l~ey~~ml~  567 (568)
T KOG2561|consen  525 EEIDSYIADERFNEDLRVDALEYLDLPLDQEEEILNEYLAMLD  567 (568)
T ss_pred             HHHHhhhHHhhhchhhhhhhHhhhcCccchHHHHHHHHHHHhc
Confidence            4566666777777777 56667779999999999999999986

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.9e-19  Score=185.46  Aligned_cols=119  Identities=23%  Similarity=0.359  Sum_probs=97.1

Q ss_pred             HHHHHhHHHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHh
Q 017845           72 KARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQK  150 (365)
Q Consensus        72 ~A~~~l~~A~~~~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~  150 (365)
                      +..+.|+.....-.++.+|...+.||++||||++.|+|||..|+| +.+.|+||||+||+|++...+      ..     
T Consensus       553 p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p------~v-----  621 (763)
T KOG0944|consen  553 PGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDP------FV-----  621 (763)
T ss_pred             CcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCc------ee-----
Confidence            344455444445556778999999999999999999999999955 699999999999999987632      11     


Q ss_pred             hcCCCCCCC--cCCHHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHhhc-CCCc
Q 017845          151 RYGLTPLKK--AVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNPE  201 (365)
Q Consensus       151 ~~g~~~~~~--~vd~~~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al~~L-~~p~  201 (365)
                      .+|.++...  .++++.|.++++|||++.+|++||+++||||++|++|+ +|++
T Consensus       622 vp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d  675 (763)
T KOG0944|consen  622 VPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMD  675 (763)
T ss_pred             cCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhccc
Confidence            124433333  58999999999999999999999999999999999997 7777

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.76  E-value=2.7e-18  Score=172.25  Aligned_cols=167  Identities=18%  Similarity=0.233  Sum_probs=119.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHhhhhHHHH-HHHHHHHhhcCCCCCCCc---------
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQR-RKEIMEQKRYGLTPLKKA---------  160 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~---------  160 (365)
                      ++.|++||+|||++.++++|||+++||.++||+||+.++++.-.  ...... ... . ....+..+....         
T Consensus       157 e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~tGIP~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~~lf~~a~~~  232 (378)
T TIGR00601       157 ETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLTGIPEDPE--QPEPVQQTAA-S-TAAATTETPQHGSVFEQAAQG  232 (378)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHhCCCcccc--ccccCCCccc-c-cccccCCCCCCcchhhhhhcc
Confidence            67999999999999999999999999999999999999985310  000000 000 0 000000000000         


Q ss_pred             ----------CCHHHHHHHHhCC-CCHHHHHHHHHhcCCCHHHHHhhc--CCCcchHHHHHhHHHHhh-------h----
Q 017845          161 ----------VDIEKIKELVSIG-FEKELVAEALRRNENDSQKALDDL--TNPESNSAIQLYIESRKR-------K----  216 (365)
Q Consensus       161 ----------vd~~~l~~L~~MG-F~~~~Ar~ALr~t~ndve~Al~~L--~~p~~~~~L~~~~~~~~~-------~----  216 (365)
                                .....|..|..+- |  .+.|..+++++.-+..-++.|  +||++.+.|+.+++.+.+       .    
T Consensus       233 ~~~~~~~~~~~g~~~l~~Lr~~pqf--~~lR~~vq~NP~~L~~lLqql~~~nP~l~q~I~~n~e~Fl~ll~~~~~~~~~~  310 (378)
T TIGR00601       233 GTEQPATEAAQGGNPLEFLRNQPQF--QQLRQVVQQNPQLLPPLLQQIGQENPQLLQQISQHPEQFLQMLNEPVGELAGE  310 (378)
T ss_pred             cccccccccccCCchHHHhhcCHHH--HHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHhcCcccccccc
Confidence                      0011356666663 5  678999999999999999988  799999888887664421       1    


Q ss_pred             --------------------hh-ccccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          217 --------------------RC-RQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       217 --------------------~~-~~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                                          .+ ...+.++|++|++|||++..|++||.+|++|.+.|++|||++.++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~i~lT~eE~~AIeRL~~LGF~r~~viqaY~ACdKNEelAAn~Lf~~~~~  378 (378)
T TIGR00601       311 SDMEGGVGAIAEAGLPQMNQIQVTPEEKEAIERLCALGFDRGLVIQAYFACDKNEELAANYLLSQNFD  378 (378)
T ss_pred             cccccccccccccCcccccccccCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHhhcCC
Confidence                                01 124789999999999999999999999999999999999988653

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.71  E-value=2.2e-17  Score=160.32  Aligned_cols=169  Identities=22%  Similarity=0.293  Sum_probs=120.9

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHH-----hhcCCCCCCCcCC-
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQ-----KRYGLTPLKKAVD-  162 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~vd-  162 (365)
                      ..+..|.++|+|||.+++..+|||+..||.++||+||..++++-.....  .+..-.....     .+....+.+ .+. 
T Consensus       134 ~~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~GIP~~~~~~~--~~~~~~~~~~~p~~~~p~~~~~~~-~~~~  210 (340)
T KOG0011|consen  134 EYEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLNGIPEDAEVPE--PEKSTAAAAELPANAQPLDLFPQG-AVEA  210 (340)
T ss_pred             hhHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhcCCcccccCCc--ccCCcccCCCCCCCCChhhcCCcc-chhh
Confidence            5689999999999999999999999999999999999999987321110  0000000000     000000000 010 


Q ss_pred             --HHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc--CCCcchHHHHHhHHHHhh---------------------h
Q 017845          163 --IEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL--TNPESNSAIQLYIESRKR---------------------K  216 (365)
Q Consensus       163 --~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L--~~p~~~~~L~~~~~~~~~---------------------~  216 (365)
                        ...++.|+++ -|  .+.|.-+.+++-.+..-++.|  .||.+.+.|+.+.+.+.+                     .
T Consensus       211 ~~~~~l~fLr~~~qf--~~lR~~iqqNP~ll~~~Lqqlg~~nP~L~q~Iq~nqe~Fl~mlnep~~~~~~~~~~~~~~~~~  288 (340)
T KOG0011|consen  211 SGGDPLEFLRNQPQF--QQLRQMIQQNPELLHPLLQQLGKQNPQLLQLIQENQEAFLQLLNEPVEGGDGGGTGAPAAEGP  288 (340)
T ss_pred             hcCCchhhhhccHHH--HHHHHHHhhCHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhhcccccccccccccccccCC
Confidence              0236667766 35  567777888888888888888  799999888888655431                     0


Q ss_pred             -hh---ccccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          217 -RC---RQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       217 -~~---~~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                       .+   .+.+.++|++|.+|||++..+++||.+|++|.+.|++|||+|..
T Consensus       289 ~~~I~vtpee~eAIeRL~alGF~ralViqayfACdKNEelAAN~Ll~~~f  338 (340)
T KOG0011|consen  289 GHQIQVTPEEKEAIERLEALGFPRALVIQAYFACDKNEELAANYLLSHSF  338 (340)
T ss_pred             cceEecCHHHHHHHHHHHHhCCcHHHHHHHHHhcCccHHHHHHHHHhhcc
Confidence             01   13578999999999999999999999999999999999999873

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.65  E-value=3e-15  Score=150.03  Aligned_cols=187  Identities=27%  Similarity=0.290  Sum_probs=122.8

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHhhcCCC-cchHHHH-HhHHHHh----h------hhhccccHHHHHH
Q 017845          161 VDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLTNP-ESNSAIQ-LYIESRK----R------KRCRQAADAKIEQ  228 (365)
Q Consensus       161 vd~~~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al~~L~~p-~~~~~L~-~~~~~~~----~------~~~~~~~~~~I~~  228 (365)
                      ++.+.++.|++|||.+..||.|||.|+|+|+.|+++|.+. +-....+ .+....+    +      ....++++.+|..
T Consensus       302 i~d~~lsllv~mGfeesdaRlaLRsc~g~Vd~AvqfI~erre~laq~R~k~~a~Ere~~~r~k~~n~~~~~wvn~rs~~r  381 (568)
T KOG2561|consen  302 INDETLSLLVGMGFEESDARLALRSCNGDVDSAVQFIIERREKLAQKREKDLAREREILERKKYGNTPMKKWVNPRSLER  381 (568)
T ss_pred             ccchHHHHHHHcCCCchHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcccccCHHHHHH
Confidence            4678899999999999999999999999999999998542 2111221 1111111    0      1134689999999


Q ss_pred             HHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCCCccccCCCCCCCC-------------------------------
Q 017845          229 LVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSI-------------------------------  277 (365)
Q Consensus       229 L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~~~~~~~~s~s~~~-------------------------------  277 (365)
                      |++|||++..|.+||+.+.||+.+|++.|..+.+. +.+.-.++|+...                               
T Consensus       382 L~~mGyer~la~eaL~r~~Ndi~~aldllq~esde-l~~n~~~~p~~vd~~~la~Lv~mGF~e~~A~~ALe~~gnn~~~a  460 (568)
T KOG2561|consen  382 LVSMGYERELAAEALRRNENDIQKALDLLQDESDE-LESNKPKRPEQVDGISLAELVSMGFEEGKARSALEAGGNNEDTA  460 (568)
T ss_pred             HHhcchHhHHHHHHHHhccCcHHHHHHhcCCcchh-hhccCCCCCcccchhhHHHHHHhccccchHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999988777663 1111111121110                               


Q ss_pred             ------CCCCCCCCCCCCCCC---CCCCCCCCCccccccccccCCCChhHHHHHHhh--hcCCcc---ccc-ccc-----
Q 017845          278 ------SMPNNGEPSSSINNE---NVEGDPDSSFEETSATEDVNGRDVEMEDELAND--LTGDVF---ADY-DIE-----  337 (365)
Q Consensus       278 ------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~rd~~me~el~~e--i~~d~~---~dy-D~~-----  337 (365)
                            +-++-++--...++.   .-+..+..+..++|+++     |++|.+|-+++  |+++.+   ++| |.+     
T Consensus       461 ~~~L~~s~~n~~~~l~~~~~~t~s~en~gp~ssg~~tsast-----d~~m~~e~~~~i~iletv~~hae~eidS~~a~er  535 (568)
T KOG2561|consen  461 QRLLSASVANEGELLTSVINATSSTENVGPESSGFGTSAST-----DSEMVDETTDDIAILETVSDHAEEEIDSYIADER  535 (568)
T ss_pred             HHHHHHhCCCCccccccccccccCCCCCCCCcCCCCcccCC-----CchhhhcCCchHHHHHhhhhHHHHHHHhhhHHhh
Confidence                  000000000001111   01111445555666665     99999988884  445544   777 888     


Q ss_pred             -hhhHHHHHHHHHHHhh
Q 017845          338 -VTKEGEAISEYLSLLD  353 (365)
Q Consensus       338 -l~~E~~~i~eYlsll~  353 (365)
                       .+.+...+.+|++|..
T Consensus       536 fned~~~~~leyldl~l  552 (568)
T KOG2561|consen  536 FNEDLRVDALEYLDLPL  552 (568)
T ss_pred             hchhhhhhhHhhhcCcc
Confidence             8889999999999854

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.3e-15  Score=158.45  Aligned_cols=101  Identities=23%  Similarity=0.371  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHhhc----CCCcchHHHHHhHHHHhhhh-hccccHHHHHHHHhCCC
Q 017845          161 VDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL----TNPESNSAIQLYIESRKRKR-CRQAADAKIEQLVAMGF  234 (365)
Q Consensus       161 vd~~~l~~L~~MGF~~~~Ar~ALr~t~n-dve~Al~~L----~~p~~~~~L~~~~~~~~~~~-~~~~~~~~I~~L~~MGF  234 (365)
                      .|.-.|.+|++|||+.+.|++||..|+| +.+.|++||    .||++.+++.-+.  ...+. ...++++.+..+++|||
T Consensus       570 ~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~--~~~~a~~~~~~e~~v~si~smGf  647 (763)
T KOG0944|consen  570 ADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPG--NSPKADAREVDEESVASIVSMGF  647 (763)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCC--CCCccccCCCChhHheeeeeecC
Confidence            5667999999999999999999999955 799999998    4677665543221  11111 12578999999999999


Q ss_pred             CHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          235 ERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       235 ~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      ++.+|++||++++|||++|++|+|+|++.
T Consensus       648 ~~~qa~~aL~~~n~nveravDWif~h~d~  676 (763)
T KOG0944|consen  648 SRNQAIKALKATNNNVERAVDWIFSHMDI  676 (763)
T ss_pred             cHHHHHHHHHhcCccHHHHHHHHHhcccc
Confidence            99999999999999999999999999994

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=2.3e-15  Score=152.76  Aligned_cols=104  Identities=25%  Similarity=0.315  Sum_probs=87.5

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCC-CCcCCHH
Q 017845           87 LQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPL-KKAVDIE  164 (365)
Q Consensus        87 l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~vd~~  164 (365)
                      +..|...+.||++||||+++|.|||-+++| |.+.||||||+||+||+...+      .+   +  ....|. .+.|++.
T Consensus       555 ~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP------~~---~--~~~vPKkDkeVdE~  623 (749)
T COG5207         555 FTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDP------FV---P--PPNVPKKDKEVDES  623 (749)
T ss_pred             cCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCC------CC---C--CCCCCcccccccHH
Confidence            678899999999999999999999999976 899999999999999986632      11   1  111222 2368999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHhcCCCHHHHHhhc-CCCc
Q 017845          165 KIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNPE  201 (365)
Q Consensus       165 ~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al~~L-~~p~  201 (365)
                      .+..|.+|||+..+||+||--.+||+.++++|+ .|||
T Consensus       624 ~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D  661 (749)
T COG5207         624 KARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDD  661 (749)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCC
Confidence            999999999999999999999999999999996 4443

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.2e-11  Score=126.23  Aligned_cols=101  Identities=21%  Similarity=0.277  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHhhc----CCCcchHHHHHhHHHHhhhhhccccHHHHHHHHhCCCC
Q 017845          161 VDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL----TNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFE  235 (365)
Q Consensus       161 vd~~~l~~L~~MGF~~~~Ar~ALr~t~n-dve~Al~~L----~~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MGF~  235 (365)
                      .+.-.|.+|++|||+...|.+||-.|+| |.+.||+||    .||++++++..+  +...+....+++..+..|.+|||.
T Consensus       557 ~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~--~~vPKkDkeVdE~~~~Slle~Gln  634 (749)
T COG5207         557 DNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPP--PNVPKKDKEVDESKARSLLENGLN  634 (749)
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCC--CCCCcccccccHHHHHHHHHcCCC
Confidence            3566899999999999999999999988 899999998    468876554332  222233346799999999999999


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          236 RPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       236 ~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      ..+++.||.-.+||++++++|.|+|++.
T Consensus       635 ~n~~Rkal~~~n~d~~r~V~w~~N~~D~  662 (749)
T COG5207         635 PNLCRKALMDMNTDSKRRVVWCINDDDG  662 (749)
T ss_pred             HHHHHHHHHHccCCchheEEEEEeCCCC
Confidence            9999999999999999999999996554

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=99.21  E-value=1.4e-11  Score=84.30  Aligned_cols=37  Identities=38%  Similarity=0.776  Sum_probs=34.7

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHH
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL  125 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L  125 (365)
                      ||++.|.+|++|||++..|++||++|+||++.|++||
T Consensus         1 i~~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    1 IDEEKVQQLMEMGFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             SHHHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            5789999999999999999999999999999999997

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>cd00194 UBA Ubiquitin Associated domain

Probab=99.02  E-value=4.7e-10  Score=76.69  Aligned_cols=38  Identities=34%  Similarity=0.710  Sum_probs=35.7

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           90 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        90 d~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e  127 (365)
                      ++++|++|++|||++.+|+.||+.|+||++.|++||++
T Consensus         1 ~~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~   38 (38)
T cd00194           1 DEEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE   38 (38)
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            46789999999999999999999999999999999974

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=99.02  E-value=4.3e-10  Score=76.53  Aligned_cols=37  Identities=30%  Similarity=0.618  Sum_probs=35.0

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 017845           90 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV  126 (365)
Q Consensus        90 d~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~  126 (365)
                      ++++|++|++|||++.+|++||+.|+||++.|++||+
T Consensus         1 ~~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        1 DEEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            4688999999999999999999999999999999985

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=98.97  E-value=8.4e-10  Score=75.51  Aligned_cols=36  Identities=33%  Similarity=0.516  Sum_probs=33.5

Q ss_pred             cHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 017845          222 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQL  257 (365)
Q Consensus       222 ~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~L  257 (365)
                      +++.|.+|++|||+++.|+.||+.|+||+++|++||
T Consensus         2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    2 DEEKVQQLMEMGFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            567899999999999999999999999999999998

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>cd00194 UBA Ubiquitin Associated domain

Probab=98.84  E-value=6.2e-09  Score=71.13  Aligned_cols=37  Identities=35%  Similarity=0.556  Sum_probs=34.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845          223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      ++.|++|++|||+++.|+.||+.|+||++.|++|||+
T Consensus         2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~   38 (38)
T cd00194           2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE   38 (38)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            4679999999999999999999999999999999984

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=98.82  E-value=7e-09  Score=70.51  Aligned_cols=36  Identities=36%  Similarity=0.613  Sum_probs=34.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 017845          223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLL  258 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll  258 (365)
                      ++.|++|++|||+++.|+.||+.|+||++.|++|||
T Consensus         2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            467999999999999999999999999999999996

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=97.66  E-value=4.9e-05  Score=77.04  Aligned_cols=42  Identities=29%  Similarity=0.374  Sum_probs=38.5

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                      ..+..|.+|++|||+|++++.|||+.-||-++|++||++.--
T Consensus       155 ~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~tGIP  196 (378)
T TIGR00601       155 ERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLTGIP  196 (378)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHhCCC
Confidence            347899999999999999999999999999999999998743

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=97.14  E-value=0.0011  Score=65.66  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=39.1

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      ..+..|.+++.|||+++.++.|||+.=||-++|++||++.--.
T Consensus       134 ~~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~GIP~  176 (340)
T KOG0011|consen  134 EYEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLNGIPE  176 (340)
T ss_pred             hhHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhcCCcc
Confidence            5678899999999999999999999999999999999986444

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=95.86  E-value=0.024  Score=39.61  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=33.9

Q ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           91 DESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        91 ~~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      ++.|.+|.+|  .++....+.+|..++||++.|++.|++.
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~   41 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM   41 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            5778999999  8889999999999999999999999875

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=95.60  E-value=0.026  Score=39.37  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=32.8

Q ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845          223 DAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       223 ~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      ++.|.+|.+|  .+++...+.+|++++||++.|++.|+.
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~   40 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE   40 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            3568889999  899999999999999999999999985

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=95.36  E-value=0.038  Score=38.83  Aligned_cols=40  Identities=18%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          224 AKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       224 ~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      +.|.++++. |.+++.|+.-|+.+++|++.|++.-|.+++.
T Consensus         2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~~   42 (43)
T PF14555_consen    2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGEA   42 (43)
T ss_dssp             HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            456676666 9999999999999999999999998876543

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=95.32  E-value=0.036  Score=38.93  Aligned_cols=41  Identities=24%  Similarity=0.343  Sum_probs=32.5

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~~d  131 (365)
                      +++|.++|+. |.++..|+.-|..+++|++.|++..++..+.
T Consensus         1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~~   42 (43)
T PF14555_consen    1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGEA   42 (43)
T ss_dssp             HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred             CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            3567777765 9999999999999999999999999887543

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=95.23  E-value=0.047  Score=38.19  Aligned_cols=39  Identities=28%  Similarity=0.348  Sum_probs=33.8

Q ss_pred             CHHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           90 PDESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        90 d~~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      .++.+.+|.+|  .++...++..|+.++||++.|++-|++.
T Consensus         2 ~~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~   42 (43)
T smart00546        2 NDEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG   42 (43)
T ss_pred             hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            46789999999  5667899999999999999999998764

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=95.13  E-value=0.062  Score=37.56  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          223 DAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       223 ~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      .+.+.+|.+|  .++...++..|+.++||++.|++.|+..
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~   42 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG   42 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            4568889999  7889999999999999999999999864

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>PRK09377 tsf elongation factor Ts; Provisional

Probab=94.52  E-value=0.061  Score=52.98  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             CCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           89 VPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        89 vd~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      |....|..|-++ |.+..+|++||..|+||++.|++||.++-
T Consensus         4 is~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G   45 (290)
T PRK09377          4 ITAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKG   45 (290)
T ss_pred             cCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence            566778888887 99999999999999999999999998754

>TIGR00116 tsf translation elongation factor Ts

Probab=94.52  E-value=0.06  Score=53.03  Aligned_cols=42  Identities=24%  Similarity=0.218  Sum_probs=37.3

Q ss_pred             CCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           89 VPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        89 vd~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      |....|..|-++ |.+..+||+||..|+||++.|++||.++--
T Consensus         3 isa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkkG~   45 (290)
T TIGR00116         3 ITAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESGI   45 (290)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhch
Confidence            566778888887 999999999999999999999999987643

This protein is found in Bacteria, mitochondria, and chloroplasts.

>PRK12332 tsf elongation factor Ts; Reviewed

Probab=94.39  E-value=0.073  Score=49.65  Aligned_cols=41  Identities=24%  Similarity=0.325  Sum_probs=36.5

Q ss_pred             CCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           89 VPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        89 vd~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      |+...|..|-++ |.+..+|++||..++||++.|++||...-
T Consensus         3 i~a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~g   44 (198)
T PRK12332          3 ITAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKG   44 (198)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence            566778888887 99999999999999999999999998764

>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.85  E-value=0.051  Score=52.83  Aligned_cols=40  Identities=23%  Similarity=0.485  Sum_probs=35.0

Q ss_pred             HHHHHhCCCCHHHHHHHHHHhC-CCHHHHHHHH-HHhhhhHH
Q 017845           94 LSLVMSMGFKEQDAKRALRICS-QDVGSAIDFL-VEEKAKRV  133 (365)
Q Consensus        94 L~~LmeMGF~~~~arrALra~~-~dve~Av~~L-~e~~~d~~  133 (365)
                      +++||+|||+...+-+||.-++ .+++.|+.|| +.|-.++.
T Consensus         4 ~~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~~d~~~d~~   45 (290)
T KOG2689|consen    4 AQSLEEMGFPSGKAEKALAVYGNRGIEQALDWLEMDHAGDPI   45 (290)
T ss_pred             HHHHHHhcCchhhhhhHhhhhccccHHHHHHHHHhcccCCCc
Confidence            3789999999999999999884 4799999999 88877765

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=93.66  E-value=0.071  Score=39.89  Aligned_cols=27  Identities=37%  Similarity=0.599  Sum_probs=21.1

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGG  247 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~  247 (365)
                      .+.+.|.++++|||+++.+++||+.-+
T Consensus         8 i~~~lVd~F~~mGF~~dkVvevlrrlg   34 (55)
T PF09288_consen    8 IDKDLVDQFENMGFERDKVVEVLRRLG   34 (55)
T ss_dssp             -SHHHHHHHHHHT--HHHHHHHHHHS-
T ss_pred             CCHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence            467889999999999999999998654

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>CHL00098 tsf elongation factor Ts

Probab=93.38  E-value=0.14  Score=47.91  Aligned_cols=38  Identities=24%  Similarity=0.262  Sum_probs=33.1

Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           92 ESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        92 ~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      +.|..|-++ |.+..+|++||-.++||++.|++||.++-
T Consensus         3 ~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g   41 (200)
T CHL00098          3 ELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKG   41 (200)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence            456677766 99999999999999999999999998764

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=93.26  E-value=0.18  Score=43.25  Aligned_cols=42  Identities=31%  Similarity=0.542  Sum_probs=37.7

Q ss_pred             cCCCCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           86 QLQVPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        86 ~l~vd~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e  127 (365)
                      +..|+++.|..+|+- |-++.+|++||..|+||+-.|+-+|.+
T Consensus        72 ~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~  114 (115)
T PRK06369         72 EVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS  114 (115)
T ss_pred             cCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence            357899999998876 999999999999999999999999865

>PRK12332 tsf elongation factor Ts; Reviewed

Probab=92.81  E-value=0.16  Score=47.41  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=33.7

Q ss_pred             CCHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          161 VDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       161 vd~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      ++...|..|.++ |.+.-.|++||..++||++.|++||
T Consensus         3 i~a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~l   40 (198)
T PRK12332          3 ITAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWL   40 (198)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            456778889888 8888999999999999999999998

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.73  E-value=0.14  Score=47.32  Aligned_cols=40  Identities=23%  Similarity=0.300  Sum_probs=36.8

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      .+...|..|.+|||++..++.+|...+-|++.|.+.||+.
T Consensus       161 ~~~~~v~~l~~mGf~~~~~i~~L~~~~w~~~~a~~~~~s~  200 (200)
T KOG0418|consen  161 WDKKKVDSLIEMGFSELEAILVLSGSDWNLADATEQLLSG  200 (200)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHhhccccchhhhhHhhccC
Confidence            4688999999999999999999999999999999998863

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.73  E-value=0.32  Score=44.96  Aligned_cols=40  Identities=20%  Similarity=0.285  Sum_probs=35.7

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        88 ~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e  127 (365)
                      -.+..++..|.+|||++.++..+|+..+-+++.|.+.+++
T Consensus       160 ~~~~~~v~~l~~mGf~~~~~i~~L~~~~w~~~~a~~~~~s  199 (200)
T KOG0418|consen  160 PWDKKKVDSLIEMGFSELEAILVLSGSDWNLADATEQLLS  199 (200)
T ss_pred             chhHHHHHHHHHhcccHHHHHHHhhccccchhhhhHhhcc
Confidence            3567899999999999999999999888899999988865

>PRK09377 tsf elongation factor Ts; Provisional

Probab=92.66  E-value=0.16  Score=50.09  Aligned_cols=37  Identities=27%  Similarity=0.278  Sum_probs=34.2

Q ss_pred             CCHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          161 VDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       161 vd~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      ++...|..|.++ |..--.|++||..++||++.|++||
T Consensus         4 is~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~L   41 (290)
T PRK09377          4 ITAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWL   41 (290)
T ss_pred             cCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            467789999998 8888999999999999999999999

>TIGR00264 alpha-NAC-related protein

Probab=92.54  E-value=0.21  Score=42.80  Aligned_cols=40  Identities=33%  Similarity=0.572  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           88 QVPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        88 ~vd~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e  127 (365)
                      .++++.+..+++- |-++.+|++||..|+||+-.|+-+|.+
T Consensus        76 ~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L~~  116 (116)
T TIGR00264        76 EITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKLEE  116 (116)
T ss_pred             CCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHhhC
Confidence            5899999988875 999999999999999999999988853

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>TIGR00116 tsf translation elongation factor Ts

Probab=92.53  E-value=0.17  Score=49.89  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=34.0

Q ss_pred             CCHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          161 VDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       161 vd~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      ++...|..|.++ |...-.|++||..++||++.|++||
T Consensus         3 isa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~L   40 (290)
T TIGR00116         3 ITAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNL   40 (290)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            456788999998 8888999999999999999999999

This protein is found in Bacteria, mitochondria, and chloroplasts.

>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.52  E-value=0.16  Score=49.38  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=33.6

Q ss_pred             HHHHhCCCCHHHHHHHHHHc-CCCHHHHHHHH-hcCCCCCC
Q 017845          227 EQLVAMGFERPRVIEACRAG-GDDIHQIMLQL-LGEPGSNP  265 (365)
Q Consensus       227 ~~L~~MGF~~~~A~~AL~~~-~nnve~A~e~L-l~~~~~~~  265 (365)
                      .+|+.|||++..+..||..+ +.++++|++|| .+|-+++.
T Consensus         5 ~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~~d~~~d~~   45 (290)
T KOG2689|consen    5 QSLEEMGFPSGKAEKALAVYGNRGIEQALDWLEMDHAGDPI   45 (290)
T ss_pred             HHHHHhcCchhhhhhHhhhhccccHHHHHHHHHhcccCCCc
Confidence            78999999999999999988 55899999999 66666544

>CHL00098 tsf elongation factor Ts

Probab=90.77  E-value=0.35  Score=45.25  Aligned_cols=34  Identities=35%  Similarity=0.378  Sum_probs=30.3

Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          164 EKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       164 ~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      ..|..|.++ |.+--.|++||..++||++.|++||
T Consensus         3 ~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~L   37 (200)
T CHL00098          3 ELVKELRDKTGAGMMDCKKALQEANGDFEKALESL   37 (200)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            457778777 8888999999999999999999998

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=89.90  E-value=0.68  Score=39.74  Aligned_cols=40  Identities=18%  Similarity=0.315  Sum_probs=34.7

Q ss_pred             cccHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845          220 QAADAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       220 ~~~~~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      .++++.|..+++- |-++..|++||+.|+||+-.|+-+|-+
T Consensus        74 ~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~  114 (115)
T PRK06369         74 EIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS  114 (115)
T ss_pred             CCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence            3577888887765 999999999999999999999988853

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=89.51  E-value=0.5  Score=49.43  Aligned_cols=37  Identities=43%  Similarity=0.698  Sum_probs=32.9

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845          223 DAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       223 ~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      +.-++||..||| ++++..+||++++||+++|++.|+.
T Consensus       455 q~QLeQL~~MGF~nre~nlqAL~atgGdi~aAverll~  492 (493)
T KOG0010|consen  455 QTQLEQLNDMGFLDREANLQALRATGGDINAAVERLLG  492 (493)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHhcCcHHHHHHHHhc
Confidence            556799999997 5778999999999999999999974

>TIGR00264 alpha-NAC-related protein

Probab=88.87  E-value=0.79  Score=39.36  Aligned_cols=38  Identities=16%  Similarity=0.297  Sum_probs=33.1

Q ss_pred             ccHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHh
Q 017845          221 AADAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLL  258 (365)
Q Consensus       221 ~~~~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll  258 (365)
                      ++++.|..+++- |-++..|++||+.|+||+-.|+-+|-
T Consensus        77 i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L~  115 (116)
T TIGR00264        77 ITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKLE  115 (116)
T ss_pred             CCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHhh
Confidence            577778877755 99999999999999999999998773

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=88.76  E-value=0.45  Score=35.65  Aligned_cols=27  Identities=19%  Similarity=0.350  Sum_probs=22.0

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhC
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICS  115 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~  115 (365)
                      +|.+.|.++..|||+......|||.-+
T Consensus         8 i~~~lVd~F~~mGF~~dkVvevlrrlg   34 (55)
T PF09288_consen    8 IDKDLVDQFENMGFERDKVVEVLRRLG   34 (55)
T ss_dssp             -SHHHHHHHHHHT--HHHHHHHHHHS-
T ss_pred             CCHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence            689999999999999999999999875

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=85.32  E-value=1.2  Score=31.91  Aligned_cols=24  Identities=21%  Similarity=0.574  Sum_probs=21.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHh
Q 017845           91 DESLSLVMSMGFKEQDAKRALRIC  114 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~  114 (365)
                      ++++..|+.+||++.++.+|++..
T Consensus         4 ~d~~~AL~~LGy~~~e~~~av~~~   27 (47)
T PF07499_consen    4 EDALEALISLGYSKAEAQKAVSKL   27 (47)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHh
Confidence            678999999999999999999977

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]

Probab=84.61  E-value=1.7  Score=42.92  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=33.2

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      ...|..|-++ |=+..+|++||-.++||+|.|++||-+.-
T Consensus         6 a~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG   45 (296)
T COG0264           6 AALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKG   45 (296)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence            4556667766 88899999999999999999999998753

>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]

Probab=83.32  E-value=1.7  Score=42.97  Aligned_cols=36  Identities=28%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             CHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          162 DIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       162 d~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      ....|..|.+. |=..-.|++||..++||++.|++||
T Consensus         5 ta~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~L   41 (296)
T COG0264           5 TAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWL   41 (296)
T ss_pred             cHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            45567777776 5555889999999999999999998

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=81.90  E-value=1.9  Score=34.78  Aligned_cols=35  Identities=23%  Similarity=0.194  Sum_probs=29.7

Q ss_pred             HHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          226 IEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       226 I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      |..+.+.||+...+..||.+|.+|+..|..++++.
T Consensus         1 i~~~~~~g~~~~~v~~aL~~tSgd~~~a~~~vl~~   35 (87)
T PF11626_consen    1 IKHYEELGYSREFVTHALYATSGDPELARRFVLNF   35 (87)
T ss_dssp             -HHHHHHTB-HHHHHHHHHHTTTBHHHHHHHHHHC
T ss_pred             CchHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            34567889999999999999999999999988776

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=81.76  E-value=2  Score=45.06  Aligned_cols=37  Identities=27%  Similarity=0.442  Sum_probs=31.3

Q ss_pred             HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           91 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        91 ~~~L~~LmeMGF~-~~~arrALra~~~dve~Av~~L~e  127 (365)
                      ...|.||-+|||. +.+..+||++++|||.+||+-|+.
T Consensus       455 q~QLeQL~~MGF~nre~nlqAL~atgGdi~aAverll~  492 (493)
T KOG0010|consen  455 QTQLEQLNDMGFLDREANLQALRATGGDINAAVERLLG  492 (493)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHhcCcHHHHHHHHhc
Confidence            4678999999996 555677999999999999998763

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=81.36  E-value=2.2  Score=34.42  Aligned_cols=36  Identities=19%  Similarity=0.167  Sum_probs=31.2

Q ss_pred             HHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           95 SLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        95 ~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      ..+-+.||+...+-.||++|.||+..|..|+.+...
T Consensus         2 ~~~~~~g~~~~~v~~aL~~tSgd~~~a~~~vl~~l~   37 (87)
T PF11626_consen    2 KHYEELGYSREFVTHALYATSGDPELARRFVLNFLQ   37 (87)
T ss_dssp             HHHHHHTB-HHHHHHHHHHTTTBHHHHHHHHHHCHC
T ss_pred             chHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            346788999999999999999999999999988854

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=81.06  E-value=2.2  Score=30.42  Aligned_cols=24  Identities=21%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHhc
Q 017845          163 IEKIKELVSIGFEKELVAEALRRN  186 (365)
Q Consensus       163 ~~~l~~L~~MGF~~~~Ar~ALr~t  186 (365)
                      .+.+..|+++||++..+.+|++..
T Consensus         4 ~d~~~AL~~LGy~~~e~~~av~~~   27 (47)
T PF07499_consen    4 EDALEALISLGYSKAEAQKAVSKL   27 (47)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHh
Confidence            467899999999999999998864

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=80.06  E-value=3.5  Score=35.71  Aligned_cols=40  Identities=30%  Similarity=0.441  Sum_probs=33.7

Q ss_pred             CCCCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHH
Q 017845           87 LQVPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLV  126 (365)
Q Consensus        87 l~vd~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~  126 (365)
                      ..++++-+...|+- |-++++|++||..++||+-.|+-.|.
T Consensus        81 ~~i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~  121 (122)
T COG1308          81 SDISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLT  121 (122)
T ss_pred             CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhc
Confidence            45788888877764 99999999999999999888876653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	2e-14
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	2e-04
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	8e-04
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	1e-06
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	3e-05
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	2e-04
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	3e-04

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Length = 118

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 91  DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQK 150
            + +  V++MG+  +   RA++    ++   +D+L        K  +         M Q 
Sbjct: 9   RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQC 68

Query: 151 RYGLTPLKKAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLTNPESNS 204
               +  K    ++ + +   +GFE + + E L  + ND   AL+DL      S
Sbjct: 69  ----SEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS 118

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Length = 118

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 30/90 (33%)

Query: 220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISM 279
            +    +E +V MG+    V+ A +A G +I QI+  L                  ++ M
Sbjct: 6   PSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEM 65

Query: 280 PNNGEPSSSINNENVEGDPDSSFEETSATE 309
               E       + +    +  FE     E
Sbjct: 66  HQCSEEKMMEFLQLMSKFKEMGFELKDIKE 95

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Length = 118

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 56  MELLEGVAAYHSGQFD--KARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRI 113
           ++ L          FD      AL   Q    ++    + +S    MGF+ +D K  L +
Sbjct: 40  LDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLL 99

Query: 114 CSQDVGSAIDFLV 126
            + D  +A++ L+
Sbjct: 100 HNNDQDNALEDLM 112

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Length = 126

 Score = 61.8 bits (149), Expect = 5e-12
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 88  QVPDESLSLVMSMGFKEQDAKRALRICS-QDVGSAIDFLVEEKAKRVKEREDNEQRRKEI 146
            + + S+  +  MGF  +  ++A+          A ++++    +               
Sbjct: 1   DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGA 60

Query: 147 MEQKRYGLTPLKKA--VDIEKIKELVSIGFEKELVAEALRRNENDSQKALD-DLTNPE 201
                              E +  + S+GF++    +ALR   N+ ++ALD   ++PE
Sbjct: 61  ASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE 118

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 6e-09
 Identities = 35/270 (12%), Positives = 79/270 (29%), Gaps = 71/270 (26%)

Query: 28  IERAHGKDSSRVRLLQAGRHPELALH--------------LRMELLE-----GVAAYHSG 68
           + R       R  LL+      + +                    ++      +   +  
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 69  QFDKARNALTSAQAKFFQL-----QVPD---------ESLSLVMSMGFKEQDAKRALRI- 113
             +     L   Q   +Q+        D          S+   +    K +  +  L + 
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 114 ---CSQDVGSAIDF----LVEEKAKRVKEREDNEQRRKEIMEQKRYGLTP------LKKA 160
               +    +A +     L+  + K+V +           ++     LTP      L K 
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 161 VDIEKIKEL----VSIG-FEKELVAEALR----RNENDSQKALDDLTNPESNSAIQLYIE 211
           +D  + ++L    ++       ++AE++R      +N      D LT       I+  + 
Sbjct: 311 LDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-----IIESSLN 364

Query: 212 SRK----RKRCRQAA----DAKI-EQLVAM 232
             +    RK   + +     A I   L+++
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 37/327 (11%), Positives = 87/327 (26%), Gaps = 84/327 (25%)

Query: 71  DKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAI----DFLV 126
           D  ++ L+  +     +   D     +          +  ++   + V   +     FL+
Sbjct: 40  DMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQ---KFVEEVLRINYKFLM 95

Query: 127 EEKAKRVKEREDN-----EQR----------------RKEIMEQKRYGLTPLKKAVDIEK 165
                  ++         EQR                R +   + R  L  L+ A     
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA----- 150

Query: 166 IKELVSI----GFEKE-LVAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQ 220
             + V I    G  K  +  +                   + +  I  ++  +       
Sbjct: 151 --KNVLIDGVLGSGKTWVALDVCL----------SYKVQCKMDFKI-FWLNLKNCNS--- 194

Query: 221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQL--LGEPGSNPTAAANN-NASTSI 277
             +  +E L  +                 ++QI        +  SN     ++  A    
Sbjct: 195 -PETVLEMLQKL-----------------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 278 SMPNNGEPSSSINNENVEGDPD--SSFEETSATEDVNGRDVEMEDELANDLTGDVFADYD 335
            + +    +  +   NV+ +    ++F  +     +  R  ++ D L+   T  +     
Sbjct: 237 LLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHIS---- 290

Query: 336 IEVTKEGEAISEYLSLLDSVAGIAIEK 362
           ++         E  SLL        + 
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQD 317

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 21/147 (14%), Positives = 54/147 (36%), Gaps = 8/147 (5%)

Query: 54  LRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRI 113
           +      G+        D A   +T  + K     + +  +  ++ MGF     ++A+  
Sbjct: 618 ISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPM--LDESVIIQLVEMGFPMDACRKAVYY 675

Query: 114 -CSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSI 172
             +    +A+++++        +  D                +        + +  +VS+
Sbjct: 676 TGNSGAEAAMNWVMSHM-----DDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSM 730

Query: 173 GFEKELVAEALRRNENDSQKALDDLTN 199
           GF ++   +ALR   N  ++A+D + +
Sbjct: 731 GFSRDQALKALRATNNSLERAVDWIFS 757

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 88  QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 127
             P++ ++ ++SMGF    A +ALR  +  +  A+D++  
Sbjct: 7   GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 46

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 73

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 86  QLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 127
              +   S+  ++S GF E  A++AL+    D+  A D++  
Sbjct: 25  TSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 73

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 9/45 (20%), Positives = 22/45 (48%)

Query: 86  QLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 130
           ++   +E +  +++MGF     + AL     D+  A++ L+ +  
Sbjct: 25  RVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	99.86
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	99.85
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.82
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	99.81
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	99.75
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.45
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	99.38
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	99.38
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	99.37
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	99.37
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	99.36
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	99.34
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	99.34
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	99.33
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	99.3
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	99.28
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	99.27
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	99.26
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	99.26
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	99.26
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	99.25
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	99.25
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	99.25
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.22
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	99.21
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	99.18
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	99.16
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	99.15
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	99.12
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	99.12
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	99.11
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	99.09
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	99.09
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	99.09
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	99.08
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	99.08
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	99.08
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	99.08
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	99.07
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	99.07
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	99.04
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	99.04
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	99.04
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	99.02
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	98.97
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	98.96
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	98.95
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	98.92
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	98.91
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	98.9
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	98.87
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	98.87
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	98.86
2dna_A	67	Unnamed protein product; ubiquitin associated doma	98.86
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	98.85
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	98.84
2dna_A	67	Unnamed protein product; ubiquitin associated doma	98.83
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	98.74
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	98.74
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	98.69
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	98.65
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	98.57
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	98.54
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	98.52
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	98.51
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	98.47
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	98.46
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	98.41
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	98.35
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	98.26
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	98.21
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	98.1
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	98.08
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	97.94
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	97.94
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	97.91
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	97.86
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	97.82
4dbg_B	162	Ring finger protein 31; ubiquitin fold, ubiquitina	97.54
4dbg_B	162	Ring finger protein 31; ubiquitin fold, ubiquitina	97.48
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	97.4
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	97.03
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	96.95
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	96.38
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	96.33
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	95.99
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	95.73
1q02_A	52	Sequestosome 1; helical bundle, protein binding; N	95.6
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	94.93
1q02_A	52	Sequestosome 1; helical bundle, protein binding; N	93.93
2dhy_A	67	CUE domain-containing protein 1; structural genomi	93.82
1aip_C	196	EF-TS, elongation factor TS; nucleotide exchange,	93.81
4fp9_B	335	Mterf domain-containing protein 2; modification en	93.81
1xb2_B	291	EF-TS, elongation factor TS, mitochondrial, EF-TSM	93.47
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	93.1
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	92.73
2dhy_A	67	CUE domain-containing protein 1; structural genomi	91.87
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	91.39
1xb2_B	291	EF-TS, elongation factor TS, mitochondrial, EF-TSM	91.2
1aip_C	196	EF-TS, elongation factor TS; nucleotide exchange,	90.75
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	90.43
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	88.73
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	88.49
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	88.29
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	87.3
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	86.87
1ixs_A	62	Holliday junction DNA helicase RUVA; heterodimeric	85.69
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	84.97
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	84.37
2dam_A	67	ETEA protein; KIAA0887, UBA-like domain, structura	84.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	84.02
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	82.81
1vdl_A	80	Ubiquitin carboxyl-terminal hydrolase 25; UBA doma	82.5
2di0_A	71	Activating signal cointegrator 1 complex subunit 2	82.16
2di0_A	71	Activating signal cointegrator 1 complex subunit 2	81.62
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	81.34
1p3q_Q	54	VPS9P, vacuolar protein sorting-associated protein	80.35

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=99.86  E-value=6.1e-22  Score=169.14  Aligned_cols=104  Identities=19%  Similarity=0.327  Sum_probs=83.2

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCC--CC------
Q 017845           88 QVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTP--LK------  158 (365)
Q Consensus        88 ~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~--~~------  158 (365)
                      .||++.|.+|++|||++.+|++||++|+| |++.|++||++|+++++...+      .   ....+....  ..      
T Consensus         1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~ep------l---~~~~~~s~~~~~~~~l~~~   71 (126)
T 2lbc_A            1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEP------L---TMPGYGGAASAGASVFGAS   71 (126)
T ss_dssp             CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCT------T---CCSSCCSSSSSCCCCSTTS
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccccc------c---cccccccccccchhhhccc
Confidence            37899999999999999999999999976 899999999999998754211      0   000111110  00      


Q ss_pred             --Cc-CCHHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHhhc-CCC
Q 017845          159 --KA-VDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNP  200 (365)
Q Consensus       159 --~~-vd~~~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al~~L-~~p  200 (365)
                        .+ ++++.|++|++|||++..|++||+.|+||+++|++|| +++
T Consensus        72 ~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~  117 (126)
T 2lbc_A           72 GLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHP  117 (126)
T ss_dssp             SCCCCCCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred             ccccCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence              22 7899999999999999999999999999999999998 444

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=99.85  E-value=1.3e-21  Score=165.77  Aligned_cols=101  Identities=20%  Similarity=0.295  Sum_probs=78.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh--hHHHhhhhHHHHHHHHHHHhhcCCCCCCCcCCHHHHHH
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA--KRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKE  168 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~--d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~~l~~  168 (365)
                      .+.|.+|++||||+.+|++||++|+||++.||+||++|+.  ++....+ ..+...+     .++.+..+.+++++.|++
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~~L~d~~~d~~-~~e~~l~-----~~~~~~~~~~~~~~~v~~   82 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQLCEKGFDPL-LVEEALE-----MHQCSEEKMMEFLQLMSK   82 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHTTCCHH-HHHHHHH-----HCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhchhcccCCChh-hhHHHHH-----hccCCccccccCHHHHHH
Confidence            5779999999999999999999999999999999999973  2111100 0111121     112222223567889999


Q ss_pred             HHhCCCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          169 LVSIGFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       169 L~~MGF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      |++|||+..+|++||+.|+||+++|++||
T Consensus        83 L~eMGF~~~~a~~AL~~~~nd~erAlewL  111 (118)
T 4ae4_A           83 FKEMGFELKDIKEVLLLHNNDQDNALEDL  111 (118)
T ss_dssp             HHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            99999999999999999999999999997

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.82  E-value=6.9e-22  Score=196.35  Aligned_cols=162  Identities=19%  Similarity=0.177  Sum_probs=122.9

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhh--cCCC--CCCCcCCHH
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKR--YGLT--PLKKAVDIE  164 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~--~g~~--~~~~~vd~~  164 (365)
                      .+++.|.+||+|||++.+|++|||+++||+++||+||++|+++......         ..+..  ....  +.+.  ...
T Consensus       167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~  235 (368)
T 1oqy_A          167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEH---------GSVQESQVSEQPATEAA--GEN  235 (368)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCC---------CCCCCCCSSCCCCSSCC--SCC
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCccccccc---------CCccccccccccCcccc--ccc
Confidence            4788999999999999999999999999999999999999987422100         00000  0000  0000  112


Q ss_pred             HHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc--CCCcchHHHHHhHHHHhhhh------------------------
Q 017845          165 KIKELVSI-GFEKELVAEALRRNENDSQKALDDL--TNPESNSAIQLYIESRKRKR------------------------  217 (365)
Q Consensus       165 ~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L--~~p~~~~~L~~~~~~~~~~~------------------------  217 (365)
                      .+..|... -|  .+.|..+++++.-++.-+++|  +||++.+.|+.+++.+.+-.                        
T Consensus       236 ~l~~Lr~~pqf--~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~  313 (368)
T 1oqy_A          236 PLEFLRDQPQF--QNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEA  313 (368)
T ss_dssp             TTHHHHHSHHH--HHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCC
T ss_pred             hHHHHhcChHH--HHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccC
Confidence            35666665 35  678888888888899999998  78999988888866543110                        


Q ss_pred             ------hc-cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          218 ------CR-QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       218 ------~~-~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                            +. ..+.++|++|++|||++..|++||++|+||+++|++|||+|+++
T Consensus       314 ~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~~d  366 (368)
T 1oqy_A          314 PQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD  366 (368)
T ss_dssp             TTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHHCC
T ss_pred             CccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCcCc
Confidence                  11 35889999999999999999999999999999999999999775

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=99.81  E-value=2.9e-20  Score=158.70  Aligned_cols=102  Identities=19%  Similarity=0.347  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHhhc-C---CCcchHHHHHh-HHHHhh-hh--------hccccHHH
Q 017845          161 VDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL-T---NPESNSAIQLY-IESRKR-KR--------CRQAADAK  225 (365)
Q Consensus       161 vd~~~l~~L~~MGF~~~~Ar~ALr~t~n-dve~Al~~L-~---~p~~~~~L~~~-~~~~~~-~~--------~~~~~~~~  225 (365)
                      ||++.|++|++|||++..|++||+.|+| +++.|++|| .   +|++.+++..+ ...... ..        .+.+++..
T Consensus         2 ~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~   81 (126)
T 2lbc_A            2 IDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEI   81 (126)
T ss_dssp             CCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHHH
Confidence            5788999999999999999999999977 899999998 3   34432222110 000000 00        22368899


Q ss_pred             HHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          226 IEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       226 I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                      |.+|++|||++..|+.||++|+||+++|++|||+|.+
T Consensus        82 v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~  118 (126)
T 2lbc_A           82 VAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE  118 (126)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred             HHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999987

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=99.75  E-value=4e-18  Score=144.37  Aligned_cols=99  Identities=16%  Similarity=0.242  Sum_probs=75.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHhhc-CC-----CcchHH-HHHhHHHHh-hhhhccccHHHHHHHHhCCC
Q 017845          163 IEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TN-----PESNSA-IQLYIESRK-RKRCRQAADAKIEQLVAMGF  234 (365)
Q Consensus       163 ~~~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al~~L-~~-----p~~~~~-L~~~~~~~~-~~~~~~~~~~~I~~L~~MGF  234 (365)
                      .+.|++|++|||++..|++||+.|+||+++|++|| .+     +++... ++..+.... ......++...|.+|++|||
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF   88 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGF   88 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCC
Confidence            35799999999999999999999999999999998 32     222221 112221110 01112346788999999999


Q ss_pred             CHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845          235 ERPRVIEACRAGGDDIHQIMLQLLGEP  261 (365)
Q Consensus       235 ~~~~A~~AL~~~~nnve~A~e~Ll~~~  261 (365)
                      +++.|++||+.|+||+++|++|||...
T Consensus        89 ~~~~a~~AL~~~~nd~erAlewL~~~~  115 (118)
T 4ae4_A           89 ELKDIKEVLLLHNNDQDNALEDLMARA  115 (118)
T ss_dssp             CHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence            999999999999999999999999753

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.45  E-value=5.8e-14  Score=152.66  Aligned_cols=108  Identities=15%  Similarity=0.240  Sum_probs=81.8

Q ss_pred             cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCC---CCcC
Q 017845           86 QLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPL---KKAV  161 (365)
Q Consensus        86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~v  161 (365)
                      .+.+|++.|++|++|||++.+|++||++++| +++.||+||++|+++++...+-...        ...+..+.   ...+
T Consensus       648 ~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~--------~~~~~~s~~~~~~~~  719 (854)
T 3ihp_A          648 APMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP--------GSSGPGSTSAAADPP  719 (854)
T ss_dssp             -----CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC----------------------C
T ss_pred             ccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCccccccccccc--------ccccccccccccCCC
Confidence            5678999999999999999999999999976 6999999999999998765321100        00001010   1357


Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHhhc-CCCc
Q 017845          162 DIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNPE  201 (365)
Q Consensus       162 d~~~l~~L~~MGF~~~~Ar~ALr~t~ndve~Al~~L-~~p~  201 (365)
                      +++.|.+|.+|||+..+|++||+.++||+++|++|+ +||+
T Consensus       720 ~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d  760 (854)
T 3ihp_A          720 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHID  760 (854)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcc
Confidence            899999999999999999999999999999999997 5554

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.38  E-value=1.8e-13  Score=103.92  Aligned_cols=50  Identities=18%  Similarity=0.246  Sum_probs=45.6

Q ss_pred             cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHh
Q 017845           86 QLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKE  135 (365)
Q Consensus        86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~  135 (365)
                      .-.+|++.|++|++|||++.+|++||++|+| |++.||+||++|+++++..
T Consensus         5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d   55 (64)
T 2crn_A            5 SSGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLD   55 (64)
T ss_dssp             SCCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSC
T ss_pred             CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccc
Confidence            3467899999999999999999999999987 9999999999999987654

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.38  E-value=1.4e-13  Score=104.57  Aligned_cols=49  Identities=24%  Similarity=0.339  Sum_probs=44.2

Q ss_pred             hccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHH
Q 017845           84 FFQLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRV  133 (365)
Q Consensus        84 ~~~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~  133 (365)
                      |.++ +|++.|++|++|||++.+|++||++|+| |+++|++||++|+++++
T Consensus        14 ya~~-~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d   63 (64)
T 2cpw_A           14 PGTI-KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS   63 (64)
T ss_dssp             SCSS-SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred             cccc-CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence            3344 7899999999999999999999999998 99999999999998753

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=99.37  E-value=2.8e-13  Score=102.82  Aligned_cols=49  Identities=24%  Similarity=0.405  Sum_probs=45.1

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHh-CCCHHHHHHHHHHhhhhHHHh
Q 017845           87 LQVPDESLSLVMSMGFKEQDAKRALRIC-SQDVGSAIDFLVEEKAKRVKE  135 (365)
Q Consensus        87 l~vd~~~L~~LmeMGF~~~~arrALra~-~~dve~Av~~L~e~~~d~~~~  135 (365)
                      ..+|+++|++||+|||++.+|++||++| ++|+++|++||++|+++++..
T Consensus         6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d   55 (64)
T 1whc_A            6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVD   55 (64)
T ss_dssp             CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTT
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcccc
Confidence            5689999999999999999999999999 689999999999999987643

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=4.6e-13  Score=104.48  Aligned_cols=50  Identities=10%  Similarity=0.229  Sum_probs=45.7

Q ss_pred             cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHh
Q 017845           86 QLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKE  135 (365)
Q Consensus        86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~  135 (365)
                      ...+|+++|++||+|||++.+|++||++|+| |+++|++||++|+++++..
T Consensus         5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d   55 (74)
T 2dag_A            5 SSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFA   55 (74)
T ss_dssp             CCSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSS
T ss_pred             CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccc
Confidence            3568999999999999999999999999986 8999999999999987654

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.36  E-value=3e-13  Score=100.86  Aligned_cols=42  Identities=29%  Similarity=0.503  Sum_probs=40.1

Q ss_pred             cHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          222 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       222 ~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      .++.|.+|++|||++++|+.||++|+||+|+|++|||+|+++
T Consensus        19 e~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D~   60 (63)
T 1wgn_A           19 ERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGP   60 (63)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            567899999999999999999999999999999999999886

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=99.34  E-value=6.2e-13  Score=92.93  Aligned_cols=41  Identities=29%  Similarity=0.539  Sum_probs=38.6

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      +++++|++|++|||++.+|++||++|+||++.|++||++|+
T Consensus         3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~~   43 (43)
T 2g3q_A            3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDSA   43 (43)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence            56889999999999999999999999999999999999873

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=6.2e-13  Score=100.48  Aligned_cols=48  Identities=25%  Similarity=0.477  Sum_probs=44.5

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHh
Q 017845           88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKE  135 (365)
Q Consensus        88 ~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~  135 (365)
                      .+++++|++|++|||++.+|++||++|+||+++|++||++|+++++..
T Consensus         7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~d~d   54 (63)
T 2dak_A            7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAE   54 (63)
T ss_dssp             CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSCCSS
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcccc
Confidence            578999999999999999999999999999999999999999886543

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=9.5e-13  Score=104.83  Aligned_cols=49  Identities=27%  Similarity=0.461  Sum_probs=45.4

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHh
Q 017845           87 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKE  135 (365)
Q Consensus        87 l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~  135 (365)
                      ..+|+++|++||+|||++.+|++||++|+||++.|++||++|+++++..
T Consensus        26 ~~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d~d   74 (83)
T 2dai_A           26 ERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTID   74 (83)
T ss_dssp             SSCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCSTTC
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcccc
Confidence            4579999999999999999999999999999999999999999987643

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=99.30  E-value=4.5e-13  Score=104.24  Aligned_cols=64  Identities=19%  Similarity=0.392  Sum_probs=51.5

Q ss_pred             HHHhhc----CCCcchHHHHHhHHHHhhhhhccccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          192 KALDDL----TNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       192 ~Al~~L----~~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      .|++||    .+|++..+|..        ....++++.|.+|++|||++.+|+.||++|+||+++|++|||+|+++
T Consensus         3 ~am~wl~~h~dDpd~d~pl~~--------~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d   70 (73)
T 1wiv_A            3 SGSSGLLSHMDDPDIDAPISH--------QTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGP   70 (73)
T ss_dssp             CCCCCCSSCCSCSCSSCCSCC--------SSCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHcCCCCCccCCCCC--------CCCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence            578897    35765433211        01246899999999999999999999999999999999999999876

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.28  E-value=2.3e-12  Score=96.09  Aligned_cols=40  Identities=18%  Similarity=0.413  Sum_probs=38.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      ++.|.+|++|||++.+|++||++|+||||+|++|||.|++
T Consensus        20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D   59 (63)
T 1wgn_A           20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG   59 (63)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            5789999999999999999999999999999999999975

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.27  E-value=1.8e-12  Score=93.30  Aligned_cols=41  Identities=24%  Similarity=0.421  Sum_probs=38.6

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           90 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        90 d~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      ++++|++|++|||++.+|++||++|+||+++|++||+++++
T Consensus         8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~gip   48 (49)
T 1ify_A            8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIP   48 (49)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence            47899999999999999999999999999999999999864

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=99.26  E-value=3.4e-12  Score=99.30  Aligned_cols=45  Identities=24%  Similarity=0.498  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhH
Q 017845           88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR  132 (365)
Q Consensus        88 ~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~  132 (365)
                      .+++++|++|++|||++.+|++||++|+||+++|++||++|.+++
T Consensus        27 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~   71 (73)
T 1wiv_A           27 DIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS   71 (73)
T ss_dssp             SSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999999999999999998764

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=99.26  E-value=4.3e-12  Score=101.24  Aligned_cols=50  Identities=22%  Similarity=0.307  Sum_probs=45.9

Q ss_pred             cCCCCHHHHHHHHhCCCCHHHHHHHHHHhC-CCHHHHHHHHHHhhhhHHHh
Q 017845           86 QLQVPDESLSLVMSMGFKEQDAKRALRICS-QDVGSAIDFLVEEKAKRVKE  135 (365)
Q Consensus        86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~-~dve~Av~~L~e~~~d~~~~  135 (365)
                      .+.+|+++|++||+|||++.+|++||++++ +|+++|++||++|+++++..
T Consensus        25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d   75 (84)
T 1vek_A           25 QPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDID   75 (84)
T ss_dssp             CCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTT
T ss_pred             CCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccc
Confidence            567899999999999999999999999996 69999999999999987654

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=3.9e-12  Score=90.57  Aligned_cols=42  Identities=29%  Similarity=0.418  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           87 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        87 l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      ..+|+++|.+|++|||++.+|++||++|+ |+++|++||++|+
T Consensus         6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~   47 (47)
T 2ekk_A            6 SGVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP   47 (47)
T ss_dssp             CSSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence            46899999999999999999999999995 9999999999884

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.25  E-value=5.6e-12  Score=95.38  Aligned_cols=45  Identities=20%  Similarity=0.446  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhH
Q 017845           88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR  132 (365)
Q Consensus        88 ~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~  132 (365)
                      .+|+++|++|++|||++.+|++||++|+||+++|++||++|..+.
T Consensus         7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~   51 (63)
T 1wji_A            7 GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK   51 (63)
T ss_dssp             SSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence            478999999999999999999999999999999999999997654

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.25  E-value=8e-12  Score=94.53  Aligned_cols=45  Identities=18%  Similarity=0.388  Sum_probs=41.7

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCCC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNP  265 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~~  265 (365)
                      ++++.|.+|++|||++.+|+.||++|+||+++|++|||+|..+..
T Consensus         8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~~   52 (63)
T 1wji_A            8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKP   52 (63)
T ss_dssp             SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCCC
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence            578899999999999999999999999999999999999977643

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=9.4e-12  Score=97.03  Aligned_cols=44  Identities=23%  Similarity=0.238  Sum_probs=41.2

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~n-nve~A~e~Ll~~~~~  263 (365)
                      .++++.|.+|++|||++..|+.||++|+| |+++|++|||+|.++
T Consensus         7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d   51 (74)
T 2dag_A            7 GLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD   51 (74)
T ss_dssp             SSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence            46889999999999999999999999997 899999999999876

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.22  E-value=6.2e-12  Score=136.73  Aligned_cols=104  Identities=19%  Similarity=0.309  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHhhc----CCCcchHHHHHhHHH-Hhhhh--hccccHHHHHHHHhC
Q 017845          161 VDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL----TNPESNSAIQLYIES-RKRKR--CRQAADAKIEQLVAM  232 (365)
Q Consensus       161 vd~~~l~~L~~MGF~~~~Ar~ALr~t~n-dve~Al~~L----~~p~~~~~L~~~~~~-~~~~~--~~~~~~~~I~~L~~M  232 (365)
                      ++.+.|++|++|||++..|++||..++| +++.|++||    .+|++..++..+... ..+..  ...++++.|.+|.+|
T Consensus       651 ~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~m  730 (854)
T 3ihp_A          651 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSM  730 (854)
T ss_dssp             --CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTT
T ss_pred             cCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHc
Confidence            4567899999999999999999999977 699999997    456655443221000 00011  124688999999999


Q ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCC
Q 017845          233 GFERPRVIEACRAGGDDIHQIMLQLLGEPGSN  264 (365)
Q Consensus       233 GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~  264 (365)
                      ||+..+|++||+.++||+++|++|||+|+++.
T Consensus       731 Gf~~~~a~~aL~~t~~~~eraidwlfs~~d~~  762 (854)
T 3ihp_A          731 GFSRDQALKALRATNNSLERAVDWIFSHIDDL  762 (854)
T ss_dssp             TCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhcCcHHHHHHhhhcCcccc
Confidence            99999999999999999999999999998763

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=99.21  E-value=1.2e-11  Score=86.39  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=37.9

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      ++++.|.+|++|||+++.|+.||++|+||+++|++|||+|
T Consensus         3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~   42 (43)
T 2g3q_A            3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence            4678899999999999999999999999999999999987

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=99.18  E-value=2.3e-11  Score=96.70  Aligned_cols=48  Identities=29%  Similarity=0.342  Sum_probs=43.6

Q ss_pred             hccccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCCC
Q 017845          218 CRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNP  265 (365)
Q Consensus       218 ~~~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~~  265 (365)
                      +..++++.|.+|++|||++.+|+.||++|+||+++|++|||+|++..+
T Consensus        25 ~~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip   72 (83)
T 1veg_A           25 QASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSLP   72 (83)
T ss_dssp             SCCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCC
T ss_pred             cCCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCc
Confidence            345688999999999999999999999999999999999999988633

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=99.16  E-value=1.4e-11  Score=88.01  Aligned_cols=43  Identities=28%  Similarity=0.254  Sum_probs=40.5

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      .+.++|.+|++|||++..|++||.+|++|+++|++|||+|+++
T Consensus         3 ~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d   45 (47)
T 1dv0_A            3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD   45 (47)
T ss_dssp             CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCC
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCC
Confidence            3678999999999999999999999999999999999999875

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=99.15  E-value=3.3e-11  Score=95.81  Aligned_cols=46  Identities=28%  Similarity=0.346  Sum_probs=42.7

Q ss_pred             cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           86 QLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d  131 (365)
                      ...+++++|++||+|||++.+|++||++|+||+++|++||++|.++
T Consensus        25 ~~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~   70 (83)
T 1veg_A           25 QASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS   70 (83)
T ss_dssp             SCCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred             cCCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            3457899999999999999999999999999999999999999874

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=99.12  E-value=6.9e-12  Score=89.56  Aligned_cols=43  Identities=21%  Similarity=0.385  Sum_probs=40.7

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhH
Q 017845           90 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR  132 (365)
Q Consensus        90 d~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~  132 (365)
                      ++++|++|++|||++..|++||.+|++|++.|++||++|++++
T Consensus         4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~   46 (47)
T 1dv0_A            4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDD   46 (47)
T ss_dssp             CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCC
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCC
Confidence            5789999999999999999999999999999999999999774

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.12  E-value=4.4e-11  Score=90.69  Aligned_cols=43  Identities=23%  Similarity=0.424  Sum_probs=40.5

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGS  263 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~n-nve~A~e~Ll~~~~~  263 (365)
                      ++++.|.+|++|||++..|+.||++|+| |+++|++|||+|+++
T Consensus        18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d   61 (64)
T 2cpw_A           18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGP   61 (64)
T ss_dssp             SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence            5677899999999999999999999998 999999999999876

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.11  E-value=2.3e-11  Score=97.27  Aligned_cols=45  Identities=22%  Similarity=0.353  Sum_probs=42.3

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHH
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRV  133 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~  133 (365)
                      +|+++|.+|++|||++.+|++||+.+++|+++|++||++|+.+++
T Consensus        20 ~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D   64 (85)
T 2dkl_A           20 IMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD   64 (85)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence            478999999999999999999999999999999999999998865

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=99.09  E-value=8.8e-11  Score=91.27  Aligned_cols=43  Identities=21%  Similarity=0.465  Sum_probs=40.0

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           88 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        88 ~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      ...+++|++||+|||++.+|++||+.|+||+++|++||++|.+
T Consensus        27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~   69 (73)
T 1vg5_A           27 AASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG   69 (73)
T ss_dssp             CCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred             cccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            3468999999999999999999999999999999999999864

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=7e-11  Score=84.05  Aligned_cols=41  Identities=29%  Similarity=0.445  Sum_probs=38.2

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEP  261 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~  261 (365)
                      .++++.|.+|++|||++..|+.||++|+ |+++|++|||+|+
T Consensus         7 ~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~   47 (47)
T 2ekk_A            7 GVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP   47 (47)
T ss_dssp             SSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence            4688999999999999999999999995 8999999999985

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.09  E-value=6.2e-11  Score=85.23  Aligned_cols=40  Identities=30%  Similarity=0.507  Sum_probs=37.6

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      ..++.|.+|++|||++++|+.||++|+||+++|++|||++
T Consensus         7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g   46 (49)
T 1ify_A            7 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG   46 (49)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            3577899999999999999999999999999999999985

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.08  E-value=6.3e-11  Score=89.89  Aligned_cols=44  Identities=23%  Similarity=0.303  Sum_probs=40.7

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~n-nve~A~e~Ll~~~~~  263 (365)
                      .+++..|.+|++|||++..|++||++|+| |++.|++|||+|.++
T Consensus         7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d   51 (64)
T 2crn_A            7 GSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCND   51 (64)
T ss_dssp             CCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence            45777899999999999999999999988 999999999999876

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=6.1e-11  Score=89.51  Aligned_cols=44  Identities=18%  Similarity=0.377  Sum_probs=41.2

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      .++++.|.+|++|||++..|+.||++|+||+++|++|||+|.++
T Consensus         7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d   50 (63)
T 2dak_A            7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD   50 (63)
T ss_dssp             CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            36788999999999999999999999999999999999998765

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=99.08  E-value=1.1e-10  Score=79.82  Aligned_cols=36  Identities=31%  Similarity=0.548  Sum_probs=34.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV  126 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~  126 (365)
                      +++|++|++|||++.+|++||++|+||++.|++||+
T Consensus         5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            578999999999999999999999999999999984

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=99.08  E-value=1.3e-10  Score=84.83  Aligned_cols=39  Identities=28%  Similarity=0.435  Sum_probs=36.8

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           91 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        91 ~~~L~~LmeMGF-~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      +++|.+|++||| ++..|++||++|+||+++|++||++|.
T Consensus        12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~   51 (53)
T 2knz_A           12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            467999999999 999999999999999999999999985

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=99.07  E-value=1.5e-10  Score=89.91  Aligned_cols=44  Identities=36%  Similarity=0.579  Sum_probs=41.0

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      .+.++.|.+|++|||++++|+.||++|+||+++|++|||+|.++
T Consensus        27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p   70 (73)
T 1vg5_A           27 AASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP   70 (73)
T ss_dssp             CCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred             cccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence            45788999999999999999999999999999999999998765

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=99.07  E-value=1.1e-10  Score=88.43  Aligned_cols=44  Identities=27%  Similarity=0.320  Sum_probs=40.7

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHc-CCCHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAG-GDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~-~nnve~A~e~Ll~~~~~  263 (365)
                      .++++.|.+|++|||++..|+.||++| ++|+++|++|||+|+++
T Consensus         7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d   51 (64)
T 1whc_A            7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD   51 (64)
T ss_dssp             CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence            457788999999999999999999999 69999999999999876

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=99.04  E-value=1.7e-10  Score=84.01  Aligned_cols=38  Identities=26%  Similarity=0.431  Sum_probs=36.5

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           91 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        91 ~~~L~~LmeMGF-~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      +++|.+|++||| ++..|++||++|+||+++|++||+.|
T Consensus        13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~   51 (52)
T 2jy5_A           13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS   51 (52)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            678999999999 99999999999999999999999987

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=99.04  E-value=2.4e-10  Score=83.12  Aligned_cols=40  Identities=40%  Similarity=0.591  Sum_probs=37.5

Q ss_pred             cHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845          222 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEP  261 (365)
Q Consensus       222 ~~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~  261 (365)
                      -+..|.+|++||| ++..++.||++|+||+++|++|||+|+
T Consensus        12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~   52 (52)
T 2jy5_A           12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS   52 (52)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence            4678999999999 999999999999999999999999875

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=2e-10  Score=91.39  Aligned_cols=44  Identities=25%  Similarity=0.342  Sum_probs=41.4

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      .++++.|.+|++|||++..|+.||++|+||+++|++|||+|+++
T Consensus        27 ~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d   70 (83)
T 2dai_A           27 RVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAED   70 (83)
T ss_dssp             SCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence            36889999999999999999999999999999999999999876

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=99.02  E-value=3.1e-10  Score=82.83  Aligned_cols=39  Identities=38%  Similarity=0.600  Sum_probs=36.8

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845          223 DAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEP  261 (365)
Q Consensus       223 ~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~  261 (365)
                      .+.|.+|++||| ++..++.||++|+||+++|++|||+|+
T Consensus        12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~   51 (53)
T 2knz_A           12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            467999999999 999999999999999999999999985

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=98.97  E-value=6e-10  Score=79.14  Aligned_cols=38  Identities=29%  Similarity=0.342  Sum_probs=34.6

Q ss_pred             HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           91 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        91 ~~~L~~LmeMGF~-~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      +++|++|++|||+ +..+++||++++||+++|++||++|
T Consensus         8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~   46 (46)
T 2bwb_A            8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG   46 (46)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence            6789999999996 6677999999999999999999975

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=98.96  E-value=7.7e-10  Score=75.46  Aligned_cols=37  Identities=35%  Similarity=0.465  Sum_probs=34.8

Q ss_pred             cHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 017845          222 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLL  258 (365)
Q Consensus       222 ~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll  258 (365)
                      .++.|.+|++|||+++.|+.||+.|+||+++|++|||
T Consensus         4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            4568999999999999999999999999999999996

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=98.95  E-value=9.4e-10  Score=87.69  Aligned_cols=45  Identities=24%  Similarity=0.306  Sum_probs=41.3

Q ss_pred             ccccHHHHHHHHhCCCCHHHHHHHHHHcC-CCHHHHHHHHhcCCCC
Q 017845          219 RQAADAKIEQLVAMGFERPRVIEACRAGG-DDIHQIMLQLLGEPGS  263 (365)
Q Consensus       219 ~~~~~~~I~~L~~MGF~~~~A~~AL~~~~-nnve~A~e~Ll~~~~~  263 (365)
                      ..+++..|.+|++|||++..|++||+.++ +|+++|++|||+|.++
T Consensus        26 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d   71 (84)
T 1vek_A           26 PVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD   71 (84)
T ss_dssp             CCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence            35689999999999999999999999996 6999999999999876

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.92  E-value=1e-09  Score=87.68  Aligned_cols=44  Identities=30%  Similarity=0.332  Sum_probs=41.3

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      +++++.|.+|++|||++.+|+.||+.+++|+++|++|||+|..+
T Consensus        19 ~~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D   62 (85)
T 2dkl_A           19 WIMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVD   62 (85)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred             ccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence            35688999999999999999999999999999999999999876

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=98.91  E-value=1.5e-09  Score=77.05  Aligned_cols=38  Identities=29%  Similarity=0.482  Sum_probs=34.7

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          223 DAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       223 ~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      +..|.+|++||| ++..++.||++++||+++|++|||++
T Consensus         8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~   46 (46)
T 2bwb_A            8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG   46 (46)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence            567999999999 57788999999999999999999975

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.90  E-value=1.2e-09  Score=80.20  Aligned_cols=41  Identities=27%  Similarity=0.362  Sum_probs=36.6

Q ss_pred             HHHHHHHHhCCCCHHH-HHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           91 DESLSLVMSMGFKEQD-AKRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~-arrALra~~~dve~Av~~L~e~~~d  131 (365)
                      +++|++|++|||+..+ +++||++|+|||++|++||+++.+.
T Consensus        10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~   51 (54)
T 2dah_A           10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP   51 (54)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence            6789999999996655 6999999999999999999998653

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=98.87  E-value=1.9e-09  Score=80.17  Aligned_cols=39  Identities=28%  Similarity=0.337  Sum_probs=35.6

Q ss_pred             HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           91 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        91 ~~~L~~LmeMGF~-~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      +++|++|++|||+ +..+++||++++||+++|++||++|.
T Consensus        18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~   57 (58)
T 1wr1_B           18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD   57 (58)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence            6689999999995 77789999999999999999999874

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.87  E-value=1.5e-09  Score=84.55  Aligned_cols=41  Identities=22%  Similarity=0.398  Sum_probs=37.6

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           91 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        91 ~~~L~~LmeMGF-~~~~arrALra~~~dve~Av~~L~e~~~d  131 (365)
                      +++|++|++||| ++..+++||++++|||++|++||+.|++.
T Consensus        30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~   71 (74)
T 1vej_A           30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP   71 (74)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence            679999999999 57888999999999999999999999764

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.86  E-value=1.7e-09  Score=79.27  Aligned_cols=41  Identities=29%  Similarity=0.438  Sum_probs=36.3

Q ss_pred             HHHHHHHHhCCCCH-HHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          223 DAKIEQLVAMGFER-PRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       223 ~~~I~~L~~MGF~~-~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      .+.|.+|++|||+. ..++.||++|+||+++|++|||++++.
T Consensus        10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~   51 (54)
T 2dah_A           10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP   51 (54)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence            66899999999955 557999999999999999999998654

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.86  E-value=1.6e-09  Score=82.70  Aligned_cols=41  Identities=24%  Similarity=0.284  Sum_probs=36.7

Q ss_pred             HHHHHHHHhCCCCHHHH-HHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           91 DESLSLVMSMGFKEQDA-KRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~a-rrALra~~~dve~Av~~L~e~~~d  131 (365)
                      ..+|++|++|||...++ ++||++|+|||++||+||++|.++
T Consensus        20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~   61 (67)
T 2dna_A           20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF   61 (67)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence            45899999999976655 999999999999999999999876

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.85  E-value=3.1e-09  Score=82.75  Aligned_cols=42  Identities=36%  Similarity=0.559  Sum_probs=38.2

Q ss_pred             cHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          222 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       222 ~~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      -++.|.+|++||| +++.++.||++++||+++|++|||++++.
T Consensus        29 ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~   71 (74)
T 1vej_A           29 YQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP   71 (74)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence            4678999999999 68899999999999999999999998665

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=98.84  E-value=2.6e-09  Score=79.48  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=35.8

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845          223 DAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEP  261 (365)
Q Consensus       223 ~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~  261 (365)
                      +..|.+|++||| +++.++.||++++||+++|++|||+++
T Consensus        18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~   57 (58)
T 1wr1_B           18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD   57 (58)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence            567999999999 588889999999999999999999885

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.83  E-value=3.4e-09  Score=80.90  Aligned_cols=43  Identities=26%  Similarity=0.300  Sum_probs=37.2

Q ss_pred             HHHHHHHHhCCCCHH-HHHHHHHHcCCCHHHHHHHHhcCCCCCC
Q 017845          223 DAKIEQLVAMGFERP-RVIEACRAGGDDIHQIMLQLLGEPGSNP  265 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~-~A~~AL~~~~nnve~A~e~Ll~~~~~~~  265 (365)
                      ...|.+|++|||... .++.||++|+||+++|++|||++++..+
T Consensus        20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~~   63 (67)
T 2dna_A           20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFSG   63 (67)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSSC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCccC
Confidence            457999999999655 5599999999999999999999977643

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=98.74  E-value=1.1e-08  Score=73.78  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=35.5

Q ss_pred             cHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845          222 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       222 ~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      .++.|.+|++|||+++.|++||+.++||++.|+++|+.
T Consensus        11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle   48 (52)
T 2ooa_A           11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILRE   48 (52)
T ss_dssp             CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            34899999999999999999999999999999999974

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=98.69  E-value=2.4e-08  Score=72.08  Aligned_cols=37  Identities=32%  Similarity=0.487  Sum_probs=35.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e  127 (365)
                      ++.|++||+|||++.+|++||+.++|||+.|.++|.|
T Consensus        12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle   48 (52)
T 2ooa_A           12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILRE   48 (52)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            4899999999999999999999999999999999976

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.65  E-value=2.6e-08  Score=72.22  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=36.7

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      +.+..|.+|++|||+++.|++||..++||++.|+++|+..
T Consensus         8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef   47 (53)
T 2d9s_A            8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF   47 (53)
T ss_dssp             CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3457799999999999999999999999999999999864

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=98.57  E-value=4.1e-08  Score=71.36  Aligned_cols=40  Identities=18%  Similarity=0.192  Sum_probs=37.1

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      +.+..|.+|++|||+++.|++||..++||++.|.+.|++-
T Consensus         6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf   45 (56)
T 2juj_A            6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF   45 (56)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred             CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999864

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.54  E-value=1.1e-07  Score=68.81  Aligned_cols=40  Identities=28%  Similarity=0.358  Sum_probs=36.9

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      ..+..|.+||+|||+++++++||..++|||+.|.+.|.+-
T Consensus         8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef   47 (53)
T 2d9s_A            8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF   47 (53)
T ss_dssp             CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3467899999999999999999999999999999999865

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=98.52  E-value=9.3e-08  Score=69.51  Aligned_cols=39  Identities=28%  Similarity=0.376  Sum_probs=36.5

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           90 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        90 d~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      .++.|++||+|||+++.+++||..++|||+.|.+.|.|-
T Consensus         7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf   45 (56)
T 2juj_A            7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF   45 (56)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            367899999999999999999999999999999999875

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.51  E-value=9.7e-08  Score=69.31  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=36.5

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHH
Q 017845           88 QVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLV  126 (365)
Q Consensus        88 ~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~  126 (365)
                      .||...|++|++|||+..+|.+||+.|+| .++.||+||.
T Consensus         7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~   46 (54)
T 2cos_A            7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS   46 (54)
T ss_dssp             SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence            57899999999999999999999999987 6999999985

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=98.47  E-value=1.5e-07  Score=78.14  Aligned_cols=41  Identities=22%  Similarity=0.350  Sum_probs=37.4

Q ss_pred             cHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          222 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       222 ~~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                      -++.|.+|++||| +++.++.||++++||+++|++|||++++
T Consensus        66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~  107 (108)
T 2cwb_A           66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA  107 (108)
T ss_dssp             THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence            3678999999999 5689999999999999999999998864

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=98.46  E-value=1.7e-07  Score=77.89  Aligned_cols=39  Identities=21%  Similarity=0.395  Sum_probs=36.2

Q ss_pred             HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           91 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        91 ~~~L~~LmeMGF~-~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      +++|++|.+|||+ +..+++||++++|||++||+||+++.
T Consensus        67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~  106 (108)
T 2cwb_A           67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG  106 (108)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence            7899999999995 57999999999999999999999874

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=98.41  E-value=3.1e-07  Score=64.42  Aligned_cols=38  Identities=18%  Similarity=0.214  Sum_probs=35.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      +..|.+|++|||+++.|++||-.++||++.|++.|+..
T Consensus         5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef   42 (46)
T 2oo9_A            5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF   42 (46)
T ss_dssp             HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence            46799999999999999999999999999999999753

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.35  E-value=3.9e-07  Score=66.17  Aligned_cols=38  Identities=26%  Similarity=0.502  Sum_probs=36.2

Q ss_pred             cCCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHhhc
Q 017845          160 AVDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL  197 (365)
Q Consensus       160 ~vd~~~l~~L~~MGF~~~~Ar~ALr~t~n-dve~Al~~L  197 (365)
                      .++.+.+++|++|||++..|.+||++|+| .++.|++||
T Consensus         7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL   45 (54)
T 2cos_A            7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYI   45 (54)
T ss_dssp             SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHH
Confidence            67889999999999999999999999998 799999998

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=98.26  E-value=1.3e-06  Score=61.19  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=35.5

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      +..++.||+|||+.+.+++||-.++|||+.|.+-|.+-
T Consensus         5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef   42 (46)
T 2oo9_A            5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF   42 (46)
T ss_dssp             HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence            67899999999999999999999999999999998764

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=98.21  E-value=1.1e-06  Score=87.30  Aligned_cols=44  Identities=27%  Similarity=0.439  Sum_probs=40.6

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSN  264 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~  264 (365)
                      ..++.|.+|++|||++.+|+.||++++||+++|++|||++..+.
T Consensus       167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~  210 (368)
T 1oqy_A          167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS  210 (368)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTC
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence            46889999999999999999999999999999999999986653

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.10  E-value=2.3e-06  Score=70.42  Aligned_cols=41  Identities=27%  Similarity=0.502  Sum_probs=38.6

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~~d  131 (365)
                      ++.|.+||+| ||++.+|+.||..|+||++.|+++|++...+
T Consensus        40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~   81 (104)
T 1wj7_A           40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD   81 (104)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence            5789999999 9999999999999999999999999999753

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=98.08  E-value=5.3e-06  Score=75.52  Aligned_cols=39  Identities=38%  Similarity=0.447  Sum_probs=37.0

Q ss_pred             cHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          222 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       222 ~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      -++.|.+|++|||++++|+.||..+++|+++|+++||+|
T Consensus       163 ~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~  201 (201)
T 3k9o_A          163 YTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN  201 (201)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            378999999999999999999999999999999999975

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=97.94  E-value=8.1e-06  Score=74.31  Aligned_cols=38  Identities=26%  Similarity=0.368  Sum_probs=36.5

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      +++|++|++|||++..|+.||+.+++|+++|++||+++
T Consensus       164 eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~  201 (201)
T 3k9o_A          164 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN  201 (201)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            68999999999999999999999999999999999974

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.94  E-value=6.7e-06  Score=60.05  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=36.7

Q ss_pred             CHHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           90 PDESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        90 d~~~L~~LmeMGF-~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      +..+|.+|.+||| ....-++||+.++|||++||+.|....
T Consensus         9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~   49 (54)
T 2cp8_A            9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLS   49 (54)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            4678999999999 999999999999999999999998764

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.91  E-value=8.5e-06  Score=59.53  Aligned_cols=42  Identities=26%  Similarity=0.412  Sum_probs=37.3

Q ss_pred             cHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          222 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       222 ~~~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      ....+.+|.+||| +++.-+.||+.++||+++|++.|+..+..
T Consensus         9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~   51 (54)
T 2cp8_A            9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGP   51 (54)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred             hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence            3457899999999 99999999999999999999999976544

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.82  E-value=2.1e-05  Score=64.76  Aligned_cols=45  Identities=18%  Similarity=0.289  Sum_probs=39.3

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCCCccc
Q 017845          223 DAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAA  268 (365)
Q Consensus       223 ~~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~~~~~  268 (365)
                      ++.|..|++| ||+++.|+.||..|+||+++|+++||+... +...|
T Consensus        40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~-~~~~W   85 (104)
T 1wj7_A           40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP-DTHSW   85 (104)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS-SCSSC
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC-cCCce
Confidence            5679999999 999999999999999999999999998764 33344

>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}

Probab=97.54  E-value=0.00052  Score=60.26  Aligned_cols=109  Identities=16%  Similarity=0.224  Sum_probs=78.6

Q ss_pred             CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHH-HhhhhHHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHHhC-CCCHHH
Q 017845          101 GFKEQDAKRALRICSQDVGSAIDFLVEEKAKRV-KEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSI-GFEKEL  178 (365)
Q Consensus       101 GF~~~~arrALra~~~dve~Av~~L~e~~~d~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~~l~~L~~M-GF~~~~  178 (365)
                      ||+..+.--||..|++..  =++||.+.-+..- .+..          ....+|.                .. .++...
T Consensus        28 GfspEEV~aAl~~~g~~~--P~~WLk~ewp~ll~~V~~----------la~~~~~----------------~~g~~s~~E   79 (162)
T 4dbg_B           28 GACPEEIFSALQYSGTEV--PLQWLRSELPYVLEMVAE----------LAGQQDP----------------GLGAFSCQE   79 (162)
T ss_dssp             CCCHHHHHHHHHHHTCCC--CHHHHHHHSCSHHHHHHH----------HHHHHCG----------------GGCCCCHHH
T ss_pred             CCCHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHH----------HHHHhCC----------------CCCcccHHH
Confidence            999999999997665322  6789988866522 1100          1111121                11 267789


Q ss_pred             HHHHHHhcCCCHHHHHhhcCCCcchHHHHHhHHHHhhhhhccccHHHHHHHHhCC-CCHHHHHHHHHHcCCCHHHHHHHH
Q 017845          179 VAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMG-FERPRVIEACRAGGDDIHQIMLQL  257 (365)
Q Consensus       179 Ar~ALr~t~ndve~Al~~L~~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L~~MG-F~~~~A~~AL~~~~nnve~A~e~L  257 (365)
                      |++||+...||+++|+...        ++.             ...++..|.++| |+++.+..||...+||++.|+--|
T Consensus        80 Ar~Aw~~~~Gd~~~Av~~c--------i~~-------------R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL  138 (162)
T 4dbg_B           80 ARRAWLDRHGNLDEAVEEC--------VRT-------------RRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL  138 (162)
T ss_dssp             HHHHHHHTTTCHHHHHHHH--------HHH-------------HHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHccCChHHHHHHH--------HHH-------------HHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence            9999999999999999741        111             234688999999 788899999999999999999765


Q ss_pred             h
Q 017845          258 L  258 (365)
Q Consensus       258 l  258 (365)
                      .
T Consensus       139 q  139 (162)
T 4dbg_B          139 Q  139 (162)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}

Probab=97.48  E-value=0.00026  Score=62.17  Aligned_cols=68  Identities=28%  Similarity=0.348  Sum_probs=57.4

Q ss_pred             CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHHhCC-CCHHHH
Q 017845          101 GFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIG-FEKELV  179 (365)
Q Consensus       101 GF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~~l~~L~~MG-F~~~~A  179 (365)
                      .|+..+||.||+..+||++.|+......+.                                 .++..|++.| |++.+|
T Consensus        74 ~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R~---------------------------------~K~~eL~s~G~~~~~~~  120 (162)
T 4dbg_B           74 AFSCQEARRAWLDRHGNLDEAVEECVRTRR---------------------------------RKVQELQSLGFGPEEGS  120 (162)
T ss_dssp             CCCHHHHHHHHHHTTTCHHHHHHHHHHHHH---------------------------------HHHHHHHHTTCCGGGTH
T ss_pred             cccHHHHHHHHHHccCChHHHHHHHHHHHH---------------------------------HHHHHHHhcCCchHHHH
Confidence            378899999999999999999998655431                                 2367899999 788999


Q ss_pred             HHHHHhcCCCHHHHHhhcCCCc
Q 017845          180 AEALRRNENDSQKALDDLTNPE  201 (365)
Q Consensus       180 r~ALr~t~ndve~Al~~L~~p~  201 (365)
                      .+||+++.||++.|+-.|+-|.
T Consensus       121 ~~aL~~~~Gdv~~Al~eLqr~l  142 (162)
T 4dbg_B          121 LQALFQHGGDVSRALTELQRQR  142 (162)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHHHHHH
Confidence            9999999999999998775543

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=97.40  E-value=0.00027  Score=66.72  Aligned_cols=38  Identities=37%  Similarity=0.434  Sum_probs=36.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      .+.|.+|++|||++..|+.||..++.|+++|+++||++
T Consensus       216 ~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~~  253 (253)
T 3e46_A          216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLSN  253 (253)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            68999999999999999999999999999999999974

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=97.03  E-value=0.00084  Score=50.61  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=36.6

Q ss_pred             CCCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           88 QVPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        88 ~vd~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      .|..+.|..|.++ |.+..+|++||..|+||++.|+.||.+.
T Consensus         7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k   48 (64)
T 2cp9_A            7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE   48 (64)
T ss_dssp             CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            4567889999987 9999999999999999999999999644

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=96.95  E-value=0.00083  Score=63.35  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=35.6

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e  127 (365)
                      +++|.+|++|||++..|+.||..+++|++.|+++|+.
T Consensus       216 ~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~  252 (253)
T 3e46_A          216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS  252 (253)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            6899999999999999999999999999999999986

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=96.38  E-value=0.0042  Score=45.99  Aligned_cols=44  Identities=9%  Similarity=0.146  Sum_probs=39.7

Q ss_pred             cccHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      .+.++.|.+|.+|  +++...++.+|++|+||++.|++.|+....+
T Consensus         7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~   52 (59)
T 1wgl_A            7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE   52 (59)
T ss_dssp             SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred             CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence            4578899999999  7899999999999999999999999987554

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=96.33  E-value=0.0039  Score=46.96  Aligned_cols=38  Identities=21%  Similarity=0.097  Sum_probs=35.0

Q ss_pred             cCCHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          160 AVDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       160 ~vd~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      .+..+.|..|.+. |.....|++||..++||++.|++||
T Consensus         7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L   45 (64)
T 2cp9_A            7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL   45 (64)
T ss_dssp             CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4677889999998 9999999999999999999999998

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=95.99  E-value=0.0079  Score=44.49  Aligned_cols=45  Identities=16%  Similarity=0.237  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           87 LQVPDESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        87 l~vd~~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~~~d  131 (365)
                      ..+.++.|.+|.+|  +++..-.+.+|++|+||+++|++-|++...+
T Consensus         6 ~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~   52 (59)
T 1wgl_A            6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE   52 (59)
T ss_dssp             SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred             CCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence            45789999999999  5578889999999999999999999886543

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=95.73  E-value=0.012  Score=42.04  Aligned_cols=40  Identities=23%  Similarity=0.377  Sum_probs=35.2

Q ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           91 DESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        91 ~~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      ++.+..|++|  .-+...++.+|+.++||+++|++-|.+..+
T Consensus         5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~   46 (49)
T 1otr_A            5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND   46 (49)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            5779999999  556889999999999999999999998743

>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A

Probab=95.60  E-value=0.0072  Score=43.47  Aligned_cols=37  Identities=38%  Similarity=0.535  Sum_probs=31.8

Q ss_pred             HHHHHHHHhCCCCHHHHH--HHHHHhCCCHHHHHHHHHH
Q 017845           91 DESLSLVMSMGFKEQDAK--RALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~ar--rALra~~~dve~Av~~L~e  127 (365)
                      .++|+|++.|||+-...-  +.|...+||+.+|++-|..
T Consensus        11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq~   49 (52)
T 1q02_A           11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQY   49 (52)
T ss_dssp             HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhhh
Confidence            478999999999988886  6788889999999987753

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=94.93  E-value=0.027  Score=40.12  Aligned_cols=38  Identities=18%  Similarity=0.303  Sum_probs=34.6

Q ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          223 DAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       223 ~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      ++.+..|.+|  .-+...++.+|+.++||+++|++.|++-
T Consensus         5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~   44 (49)
T 1otr_A            5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE   44 (49)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            4668899999  7899999999999999999999999875

>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A

Probab=93.93  E-value=0.04  Score=39.60  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=31.7

Q ss_pred             HHHHHHHHhCCCCHHHH--HHHHHHcCCCHHHHHHHHh
Q 017845          223 DAKIEQLVAMGFERPRV--IEACRAGGDDIHQIMLQLL  258 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~~A--~~AL~~~~nnve~A~e~Ll  258 (365)
                      .++|.++.+|||+.+-.  ...|...++|+.+|++.|.
T Consensus        11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq   48 (52)
T 1q02_A           11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ   48 (52)
T ss_dssp             HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence            56789999999999876  4889999999999999874

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.82  E-value=0.073  Score=40.31  Aligned_cols=42  Identities=14%  Similarity=0.143  Sum_probs=36.9

Q ss_pred             ccHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          221 AADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       221 ~~~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                      +-+..+.+|.+|  -+++...+.+|++|+||++.|++-|+.-..
T Consensus        17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~   60 (67)
T 2dhy_A           17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNL   60 (67)
T ss_dssp             CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence            467889999999  568999999999999999999999987543

>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1

Probab=93.81  E-value=0.067  Score=48.55  Aligned_cols=38  Identities=29%  Similarity=0.277  Sum_probs=33.3

Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           92 ESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        92 ~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      ..|..|-++ |.+..+|++||-.|+||++.|++||-+.-
T Consensus         5 ~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG   43 (196)
T 1aip_C            5 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERG   43 (196)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence            456777777 99999999999999999999999997753

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=93.81  E-value=0.66  Score=45.11  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=77.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHH
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELV  170 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vd~~~l~~L~  170 (365)
                      +..|..|.+|||+..+..++|...-+-...          .   .                           ...|+.|.
T Consensus        47 e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----------~---l---------------------------~~~i~~L~   86 (335)
T 4fp9_B           47 ERVMSSLLDMGFSNAHINELLSVRRGASLQ----------Q---L---------------------------LDIISEFI   86 (335)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----------H---H---------------------------HHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHhCcccchh----------H---H---------------------------HHHHHHHH
Confidence            456888999999999999998875431100          0   0                           12467778


Q ss_pred             hCCCCHHHHHHHHHhcCCC-------HHHHHhhcC-----CCcchHHHHHhHHHHhhhhhccccHHHHHHH-HhCCCCHH
Q 017845          171 SIGFEKELVAEALRRNEND-------SQKALDDLT-----NPESNSAIQLYIESRKRKRCRQAADAKIEQL-VAMGFERP  237 (365)
Q Consensus       171 ~MGF~~~~Ar~ALr~t~nd-------ve~Al~~L~-----~p~~~~~L~~~~~~~~~~~~~~~~~~~I~~L-~~MGF~~~  237 (365)
                      .+||+...+.++|+.++.-       +..-+.||.     ..++...+...+.-...+  ...-...+.-| ..|||+..
T Consensus        87 ~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s--~e~i~~~v~~L~~~lGfS~~  164 (335)
T 4fp9_B           87 LLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR--QQDINDTVRLLKEKCLFTVQ  164 (335)
T ss_dssp             HTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSC--HHHHHHHHHHHHHTSCCCHH
T ss_pred             HcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhccC--hHHHHHHHHHHHHHcCCCHH
Confidence            8888888888888887642       233333431     112211222111100000  00012233445 58999999


Q ss_pred             HHHHHHHHc-------CCCHHHHHHHHhcCCCC
Q 017845          238 RVIEACRAG-------GDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       238 ~A~~AL~~~-------~nnve~A~e~Ll~~~~~  263 (365)
                      ++..++..|       ..++..-++||.+..+-
T Consensus       165 ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl  197 (335)
T 4fp9_B          165 QVTKILHSCPSVLREDLGQLEYKFQYAYFRMGI  197 (335)
T ss_dssp             HHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCC
Confidence            999998865       34678888998877664

>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1

Probab=93.47  E-value=0.055  Score=51.92  Aligned_cols=41  Identities=27%  Similarity=0.404  Sum_probs=35.2

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~~d  131 (365)
                      ...|..|-++ |.+..+||+||-.|+||++.|++||-+....
T Consensus         5 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~k   46 (291)
T 1xb2_B            5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQK   46 (291)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            3557778887 9999999999999999999999999875433

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=93.10  E-value=0.017  Score=53.14  Aligned_cols=38  Identities=18%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      .+.|.+|++|||++..++.||..++-|+++|++.||+.
T Consensus       178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~  215 (216)
T 2pwq_A          178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN  215 (216)
T ss_dssp             --------------------------------------
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence            57899999999999999999999999999999999863

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=92.73  E-value=0.02  Score=52.58  Aligned_cols=38  Identities=29%  Similarity=0.396  Sum_probs=0.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      +++|..|++|||++..+++||..++.|++.|++.|+..
T Consensus       178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~  215 (216)
T 2pwq_A          178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN  215 (216)
T ss_dssp             --------------------------------------
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence            68999999999999999999999999999999998754

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.87  E-value=0.25  Score=37.29  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=33.8

Q ss_pred             HHHHHHHHhCCC---CHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           91 DESLSLVMSMGF---KEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        91 ~~~L~~LmeMGF---~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      +++|.+|.+| |   +..-.+..|++|+||+++|++-|.+-..
T Consensus        19 ~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~   60 (67)
T 2dhy_A           19 NQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQMNL   60 (67)
T ss_dssp             HHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence            6789999999 6   5677888999999999999999988654

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=91.39  E-value=0.28  Score=33.46  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=33.0

Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          224 AKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       224 ~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                      +.|.+.++. |.+...|+.-|..++.|++.|++-.|.+++
T Consensus         7 ~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~~   46 (46)
T 1v92_A            7 DALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGG   46 (46)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            456666665 899999999999999999999998887653

>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1

Probab=91.20  E-value=0.12  Score=49.57  Aligned_cols=35  Identities=23%  Similarity=0.138  Sum_probs=31.9

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          163 IEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       163 ~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      ...|..|.++ |...-.|++||..++||+++|++||
T Consensus         5 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~L   40 (291)
T 1xb2_B            5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWL   40 (291)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4568888888 8888999999999999999999998

>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1

Probab=90.75  E-value=0.22  Score=45.20  Aligned_cols=34  Identities=35%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          164 EKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       164 ~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      ..|..|.++ |...-.|++||..++||++.|++||
T Consensus         5 ~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~L   39 (196)
T 1aip_C            5 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL   39 (196)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            457788887 8888999999999999999999998

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=90.43  E-value=0.28  Score=39.97  Aligned_cols=39  Identities=36%  Similarity=0.599  Sum_probs=34.6

Q ss_pred             CCCCHHHHHHHHh-CCCCHHHHHHHHHHhCCCHHHHHHHH
Q 017845           87 LQVPDESLSLVMS-MGFKEQDAKRALRICSQDVGSAIDFL  125 (365)
Q Consensus        87 l~vd~~~L~~Lme-MGF~~~~arrALra~~~dve~Av~~L  125 (365)
                      ..++++.+..+|+ .|-++.+|++||+.|+||+=.|+-+|
T Consensus        62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L  101 (102)
T 1tr8_A           62 MEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL  101 (102)
T ss_dssp             CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence            5688999998876 69999999999999999988888775

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=88.73  E-value=0.29  Score=44.81  Aligned_cols=29  Identities=17%  Similarity=0.264  Sum_probs=26.6

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhCCC
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICSQD  117 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~~d  117 (365)
                      .|.++|..|++|||++..++.||..++.|
T Consensus       168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~  196 (215)
T 1tte_A          168 IDHDLIDEFESQGFEKDKIVEVLRRLGVK  196 (215)
T ss_dssp             CSHHHHHHHHHHTCCHHHHHHHHHHSCCS
T ss_pred             ccHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence            46889999999999999999999998876

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=88.49  E-value=0.55  Score=38.23  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=32.6

Q ss_pred             cCCHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          160 AVDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       160 ~vd~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      .++++.|..+++- |-++..|++||+.++||+-.|+-.|
T Consensus        63 ~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L  101 (102)
T 1tr8_A           63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL  101 (102)
T ss_dssp             CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence            3677888887765 9999999999999999999988765

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=88.29  E-value=0.33  Score=44.45  Aligned_cols=29  Identities=24%  Similarity=0.457  Sum_probs=26.2

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDD  249 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nn  249 (365)
                      .+...|.+|+.|||+++.|+.||..++.|
T Consensus       168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~  196 (215)
T 1tte_A          168 IDHDLIDEFESQGFEKDKIVEVLRRLGVK  196 (215)
T ss_dssp             CSHHHHHHHHHHTCCHHHHHHHHHHSCCS
T ss_pred             ccHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence            35789999999999999999999999884

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.30  E-value=0.97  Score=33.23  Aligned_cols=40  Identities=15%  Similarity=0.211  Sum_probs=34.6

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          223 DAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       223 ~~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                      .+.|.+.+.+ |-++..|+.-|..++.|++.|++..|.+++
T Consensus        16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~   56 (62)
T 2dal_A           16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG   56 (62)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            4567777776 999999999999999999999998887753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=86.87  E-value=3.5  Score=35.19  Aligned_cols=104  Identities=13%  Similarity=0.011  Sum_probs=70.1

Q ss_pred             eehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHH
Q 017845            2 VWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQ   81 (365)
Q Consensus         2 vWcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~   81 (365)
                      .+||+.++   ..+.|..-+.+|-+.+++.+|.+..              ...+.+..-|.+.+..|+.++|...+.+|-
T Consensus        50 ~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  112 (283)
T 3edt_B           50 ALVYRDQN---KYKEAAHLLNDALAIREKTLGKDHP--------------AVAATLNNLAVLYGKRGKYKEAEPLCKRAL  112 (283)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTCH--------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcc---cHHHHHHHHHHHHHHHHHHcCCcch--------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            35666554   4678888888888888777776543              344566667999999999999999999987


Q ss_pred             hhhccC--CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           82 AKFFQL--QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        82 ~~~~~l--~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      ..+.+.  .-++.....+..+|.        +....|+.+.|+.++..-..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~la~--------~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B          113 EIREKVLGKFHPDVAKQLNNLAL--------LCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH--------HHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHH
Confidence            765443  112444444443321        22346789999999766543

>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1

Probab=85.69  E-value=1.2  Score=32.83  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=22.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHh
Q 017845           91 DESLSLVMSMGFKEQDAKRALRIC  114 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~  114 (365)
                      +++++.|+.+||++.+|.+|+...
T Consensus        18 ~ea~~AL~aLGY~~~ea~kav~~v   41 (62)
T 1ixs_A           18 EEAVMALAALGFKEAQARAVVLDL   41 (62)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHH
Confidence            578999999999999999999875

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.97  E-value=1.9  Score=32.20  Aligned_cols=40  Identities=15%  Similarity=0.153  Sum_probs=34.1

Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          224 AKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       224 ~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      +.|.+.+.+ |-+...|+.-|..++.|++.|++-.|.++..
T Consensus        19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~~   59 (66)
T 2dzl_A           19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETNI   59 (66)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence            567777766 9999999999999999999999998876543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=84.37  E-value=5.4  Score=30.55  Aligned_cols=99  Identities=18%  Similarity=0.049  Sum_probs=62.3

Q ss_pred             ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845            3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA   82 (365)
Q Consensus         3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~   82 (365)
                      |+|+..+   ..+.|..-+.+|-+.+.+. |               ......+.+..-|.+.+..|+.++|...+.++-.
T Consensus        17 ~~~~~~~---~~~~A~~~~~~al~~~~~~-~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   77 (164)
T 3ro3_A           17 NTHYLLG---NFRDAVIAHEQRLLIAKEF-G---------------DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL   77 (164)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHHHHHH-T---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhc---CHHHHHHHHHHHHHHHHHh-C---------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5566554   4667777777777666542 1               1122345666679999999999999999999977


Q ss_pred             hhccCCCCHHHHHHHHhCCCCHHHHHHH-HHHhCCCHHHHHHHHHHhh
Q 017845           83 KFFQLQVPDESLSLVMSMGFKEQDAKRA-LRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        83 ~~~~l~vd~~~L~~LmeMGF~~~~arrA-Lra~~~dve~Av~~L~e~~  129 (365)
                      ..+...-.......+..         .| +....|+.+.|+.++..-.
T Consensus        78 ~~~~~~~~~~~~~~~~~---------l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           78 LARQLKDRAVEAQSCYS---------LGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHTTCHHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCcHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHH
Confidence            77655322222222222         22 2233678999999876554

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.19  E-value=1.9  Score=32.26  Aligned_cols=40  Identities=15%  Similarity=0.113  Sum_probs=34.0

Q ss_pred             HHHHHHHHhC-C-CCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          223 DAKIEQLVAM-G-FERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       223 ~~~I~~L~~M-G-F~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                      .+.|.+.+.+ | -+...|+.-|..++.|++.|++-.|.+..
T Consensus        19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~   60 (67)
T 2dam_A           19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE   60 (67)
T ss_dssp             HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            4567777776 8 78889999999999999999999887644

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=84.02  E-value=5.8  Score=34.48  Aligned_cols=103  Identities=13%  Similarity=0.006  Sum_probs=68.1

Q ss_pred             ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845            3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA   82 (365)
Q Consensus         3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~   82 (365)
                      +||+.+   .....|..-+.+|-+.+++.+|.+...              ....+..-|.+.+..|+.++|...+.++-.
T Consensus       119 ~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          119 VLYGKR---GKYKEAEPLCKRALEIREKVLGKDHPD--------------VAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHHHTT---TCHHHHHHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHc---CcHHHHHHHHHHHHHHHHHhcCCCChH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455554   457788888888888888777755432              345556678889999999999999999877


Q ss_pred             hhccCC--CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           83 KFFQLQ--VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        83 ~~~~l~--vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      .+.+..  -++.....+..+|        -+....|+.+.|+.++..-..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLA--------SCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHH--------HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHHHH
Confidence            655431  1333333333322        122335789999999866553

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=82.81  E-value=7.4  Score=35.67  Aligned_cols=162  Identities=10%  Similarity=0.073  Sum_probs=88.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHh----C----CCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCCcCC
Q 017845           91 DESLSLVMSMGFKEQDAKRALRIC----S----QDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVD  162 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~----~----~dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vd  162 (365)
                      .+.|+.|.+||++....++....+    .    .++..-+.||.+.--...++.+      .-.+.|.-++....  . -
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~------il~~~P~lL~~~~e--~-l   76 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGA------FLTKNHAIFSEDLE--N-L   76 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHH------HHHHCTTGGGSCHH--H-H
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHH------HHHhCChhhhCCHH--H-H
Confidence            467888999999999887765551    2    2466677888665322222210      00001111111100  0 1


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHhcCC----C---HHHHHhhc-CC-----CcchHHHHHhHHHHhhhhhccccHHHHHH-
Q 017845          163 IEKIKELVSIGFEKELVAEALRRNEN----D---SQKALDDL-TN-----PESNSAIQLYIESRKRKRCRQAADAKIEQ-  228 (365)
Q Consensus       163 ~~~l~~L~~MGF~~~~Ar~ALr~t~n----d---ve~Al~~L-~~-----p~~~~~L~~~~~~~~~~~~~~~~~~~I~~-  228 (365)
                      ...++.|.++|++.....+.+..++.    +   +...+++| ..     .++...+...+.-...  ....-...+.- 
T Consensus        77 ~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~--s~e~~~~~v~~l  154 (270)
T 3m66_A           77 KTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTG--SLEPVKENMKVY  154 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTS--CSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceee--chHHHHHHHHHH
Confidence            23677889999999999999888864    2   33344444 11     1111111111100000  00011334554 


Q ss_pred             HHhCCCCHHHHHHHHHHc-------CCCHHHHHHHHhcCCCC
Q 017845          229 LVAMGFERPRVIEACRAG-------GDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       229 L~~MGF~~~~A~~AL~~~-------~nnve~A~e~Ll~~~~~  263 (365)
                      +..|||+.+.+..++..+       -.++..-++||.+..+-
T Consensus       155 ~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~  196 (270)
T 3m66_A          155 RLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSI  196 (270)
T ss_dssp             HHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCC
T ss_pred             HHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCC
Confidence            479999999999988876       34578888999776554

>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1

Probab=82.50  E-value=4.6  Score=31.09  Aligned_cols=45  Identities=13%  Similarity=0.253  Sum_probs=35.1

Q ss_pred             cHHHHHHHHhC-CCCHH-HHHHHHHHcCCCHHHHHHHHhcCCCCCCc
Q 017845          222 ADAKIEQLVAM-GFERP-RVIEACRAGGDDIHQIMLQLLGEPGSNPT  266 (365)
Q Consensus       222 ~~~~I~~L~~M-GF~~~-~A~~AL~~~~nnve~A~e~Ll~~~~~~~~  266 (365)
                      .+..+++|.+. |..-. .-.+||++.+||+.+|+-+|.+.+...+.
T Consensus        24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~~P~   70 (80)
T 1vdl_A           24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKTPP   70 (80)
T ss_dssp             HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCCCS
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccccCCC
Confidence            44577888887 86554 55689999999999999999987666443

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=82.16  E-value=2.1  Score=32.61  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=31.5

Q ss_pred             HHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           92 ESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        92 ~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      ..|+++.++  -++..-+++.|.++++|||.+++.|++..
T Consensus        15 s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~   54 (71)
T 2di0_A           15 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER   54 (71)
T ss_dssp             HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence            455666665  67788899999999999999999999973

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=81.62  E-value=2.5  Score=32.23  Aligned_cols=39  Identities=18%  Similarity=0.192  Sum_probs=33.5

Q ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845          223 DAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGEP  261 (365)
Q Consensus       223 ~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~~  261 (365)
                      +..|.++.++  -+...-+.+.|..+++|+|++++.||++.
T Consensus        14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~   54 (71)
T 2di0_A           14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER   54 (71)
T ss_dssp             HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence            4567777777  68889999999999999999999999864

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=81.34  E-value=6  Score=34.39  Aligned_cols=103  Identities=13%  Similarity=-0.006  Sum_probs=66.2

Q ss_pred             ehhhhhCCCCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHhCCCchhhHHHHHHHHHHhhhcccCChhHHHHHhHHHHh
Q 017845            3 WCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA   82 (365)
Q Consensus         3 Wcy~~L~~~~~L~dA~~rL~~~~~~f~~~yG~~~~Rl~~lkg~~~~E~~l~~RL~lLqgvv~~h~g~~~~A~~~l~~A~~   82 (365)
                      +||+.++   ....|..-+.+|-+.+.+.+|.+..              .....+..-|.+.+..|+.++|...+.++-.
T Consensus        77 ~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  139 (311)
T 3nf1_A           77 LVYRDQN---KYKDAANLLNDALAIREKTLGKDHP--------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALE  139 (311)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHHHHHHHCTTCH--------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCCh--------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            4555544   5677888888887777777765533              2344556668888999999999999999876


Q ss_pred             hhccC--CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           83 KFFQL--QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        83 ~~~~l--~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      ...+.  .-++.....+..+|.        +....|+.+.|+.++..-..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~la~--------~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          140 IREKVLGKDHPDVAKQLNNLAL--------LCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHH--------HHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCChHHHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHH
Confidence            65433  222333333333221        22336789999999765543

>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A

Probab=80.35  E-value=0.68  Score=33.53  Aligned_cols=38  Identities=18%  Similarity=0.305  Sum_probs=29.8

Q ss_pred             cHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845          222 ADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       222 ~~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      ..+.+.+|.+|  .++++..+..|++++||++.|++-||.
T Consensus        12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq   51 (54)
T 1p3q_Q           12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred             HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            56778999999  899999999999999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1wjia_	63	a.5.2.1 (A:) Tudor domain containing protein 3, TD	3e-05
d1wjia_	63	a.5.2.1 (A:) Tudor domain containing protein 3, TD	8e-05
d1wjia_	63	a.5.2.1 (A:) Tudor domain containing protein 3, TD	0.001
d1wiva_	73	a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress	5e-05
d1wiva_	73	a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress	2e-04
d1wgna_	63	a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1	1e-04
d1wgna_	63	a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1	1e-04
d1wgna_	63	a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1	0.002
d1oqya1	41	a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Hum	2e-04
d1oqya1	41	a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Hum	0.002
d1oqya1	41	a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Hum	0.002
d1vg5a_	73	a.5.2.1 (A:) Rhomboid family protein At3g58460 {Th	4e-04
d1vg5a_	73	a.5.2.1 (A:) Rhomboid family protein At3g58460 {Th	0.001
d2cpwa1	51	a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1	0.003

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 9/40 (22%), Positives = 24/40 (60%)

Query: 88  QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 127
            V +++L  +  MGF ++ +++AL     ++ +A++ L+ 
Sbjct: 7   GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT 46

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (89), Expect = 8e-05
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 160 AVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLTN 199
            VD + +K +  +GF KE   +AL  N N+ + AL+ L  
Sbjct: 7   GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT 46

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLL 258
           +  ++ +  MGF +    +A    G+++   +  LL
Sbjct: 10  EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL 45

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.0 bits (91), Expect = 5e-05
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 88  QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 127
            +   S+  ++S GF E  A++AL+    D+  A D++  
Sbjct: 27  DIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 154 LTPLKKAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNPESNSA 205
           ++     +D   +  L+S GF +++  +AL+ +  D +KA D +  N   +S 
Sbjct: 21  ISHQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPSSG 73

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG 262
              +E +V MG+    V+ A +  G++I QI+  L    G
Sbjct: 20  RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 7/37 (18%), Positives = 20/37 (54%)

Query: 91  DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 127
            + +  V++MG+  +   RA++   +++   +D+L  
Sbjct: 20  RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 8/38 (21%), Positives = 22/38 (57%)

Query: 160 AVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL 197
             + + ++ +V++G+  E V  A+++   + ++ LD L
Sbjct: 17  PSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYL 54

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 91  DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL 125
           +  L+ +MSMG++ +    ALR    +   A+++L
Sbjct: 5   ETMLTEIMSMGYERERVVAALRASYNNPHRAVEYL 39

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLL 258
              +  + ++++MG+ER RV+ A RA  ++ H+ +  LL
Sbjct: 2   SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLL 40

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query: 164 EKIKELVSIGFEKELVAEALRRNENDSQKALDDL 197
             + E++S+G+E+E V  ALR + N+  +A++ L
Sbjct: 6   TMLTEIMSMGYERERVVAALRASYNNPHRAVEYL 39

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG 262
           A++ +I++LVAMGF+R +V  A  A  DD+   +  L+ + G
Sbjct: 28  ASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 89  VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 128
             +E +  +++MGF     + AL     D+  A++ L+ +
Sbjct: 28  ASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ 67

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 89  VPDES-LSLVMSMGFKEQDAKRALRICS-QDVGSAIDFLVE 127
           +   S L +++SMGF    A++AL     + V +A D+L  
Sbjct: 10  IKHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	99.43
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	99.43
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	99.42
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	99.39
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	99.33
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	99.33
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	99.3
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	99.29
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	99.26
d1vega_	83	NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculu	99.25
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	99.23
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	99.21
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	99.21
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	99.2
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	99.19
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	99.17
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	99.14
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	99.07
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	99.05
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	98.83
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	98.82
d1oqya2	44	DNA repair protein Hhr23a {Human (Homo sapiens) [T	98.63
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	98.24
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.23
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	98.18
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.16
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	98.14
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	98.03
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	97.91
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	97.79
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	97.7
d1vega_	83	NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculu	97.68
d1oqya2	44	DNA repair protein Hhr23a {Human (Homo sapiens) [T	97.51
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	97.2
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	97.11
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	97.1
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	96.94
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	96.92
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	96.92
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	96.72
d3e46a1	42	Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal	96.7
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	96.47
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	96.42
d3e46a1	42	Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal	95.67
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	95.55
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	94.5
d2dkla1	72	Trinucleotide repeat containing 6c protein, TNRC6C	93.11
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	93.08
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	92.42
d2dkla1	72	Trinucleotide repeat containing 6c protein, TNRC6C	91.96
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	91.63
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	89.63
d2cp8a1	41	Migration-inducing protein 19 NBR1 {Human (Homo sa	88.8
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	87.76
d2k0bx1	52	Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [Tax	86.94
d2k0bx1	52	Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [Tax	85.3
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	84.93
d2cp8a1	41	Migration-inducing protein 19 NBR1 {Human (Homo sa	82.61
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	82.27
d1cuka1	48	DNA helicase RuvA subunit, C-terminal domain {Esch	80.95
d1vdla_	80	Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M	80.05

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.4e-14  Score=101.47  Aligned_cols=44  Identities=27%  Similarity=0.373  Sum_probs=41.3

Q ss_pred             ccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHh
Q 017845           85 FQLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEE  128 (365)
Q Consensus        85 ~~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~  128 (365)
                      +...+|+..|++|++|||++.+|++||++|+| +++.||+||++|
T Consensus         7 p~~~~~~~~l~~L~~MGF~~~~a~~AL~~t~n~~ve~A~~WLl~H   51 (51)
T d2cpwa1           7 PGTIKHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH   51 (51)
T ss_dssp             SCSSSCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHcC
Confidence            45778999999999999999999999999987 899999999987

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.1e-14  Score=102.61  Aligned_cols=45  Identities=20%  Similarity=0.282  Sum_probs=41.4

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHH
Q 017845           90 PDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVK  134 (365)
Q Consensus        90 d~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~  134 (365)
                      |++.|++|++|||+++.|++||+.|+| +++.|++||++|++|++.
T Consensus         2 ~p~~v~~L~~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h~~d~d~   47 (51)
T d2crna1           2 SPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSL   47 (51)
T ss_dssp             SCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCc
Confidence            577899999999999999999999965 899999999999998754

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=4.1e-14  Score=105.69  Aligned_cols=48  Identities=23%  Similarity=0.411  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHh
Q 017845           88 QVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKE  135 (365)
Q Consensus        88 ~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~  135 (365)
                      .+|++.|++|++|||++.+|++||++|+| ++++|++||++|+++++..
T Consensus         7 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~d~d~~   55 (64)
T d1whca_           7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVD   55 (64)
T ss_dssp             CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTT
T ss_pred             ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHHCCCCCCCC
Confidence            57999999999999999999999999977 8999999999999987644

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-13  Score=102.92  Aligned_cols=48  Identities=19%  Similarity=0.379  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhHHH
Q 017845           87 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVK  134 (365)
Q Consensus        87 l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~~~  134 (365)
                      -.||++.|++||+|||++..|++||+.|+||+++|++||++|.++.+.
T Consensus         6 ~~~d~~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~~wL~~~~~~~~~   53 (63)
T d1wjia_           6 SGVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPV   53 (63)
T ss_dssp             CSSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCCCC
T ss_pred             CccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCc
Confidence            458999999999999999999999999999999999999999988643

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=1.6e-13  Score=104.99  Aligned_cols=45  Identities=20%  Similarity=0.403  Sum_probs=42.2

Q ss_pred             ccccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          219 RQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       219 ~~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      ..+++..|.+|++|||++.+|+.||+.|+||+++|++|||+|+.+
T Consensus        26 ~~~d~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~Av~~Lls~~~~   70 (73)
T d1wiva_          26 SDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGP   70 (73)
T ss_dssp             CSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred             CCCCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence            357899999999999999999999999999999999999999765

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=4.8e-13  Score=104.84  Aligned_cols=51  Identities=22%  Similarity=0.292  Sum_probs=46.1

Q ss_pred             ccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHHhhhhHHHh
Q 017845           85 FQLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKE  135 (365)
Q Consensus        85 ~~l~vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~e~~~d~~~~  135 (365)
                      ....+|++.|++|++|||++..|++||+.|+| +++.|++||++|+++++..
T Consensus        24 ~~p~~d~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~d~d~d   75 (84)
T d1veka_          24 AQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDID   75 (84)
T ss_dssp             CCCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTT
T ss_pred             CCCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCcc
Confidence            34678999999999999999999999999865 8999999999999997654

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-12  Score=96.96  Aligned_cols=45  Identities=16%  Similarity=0.324  Sum_probs=42.5

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSN  264 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~~  264 (365)
                      .++++.|.+|++|||++..|+.||+.|+||+++|++|||+|++++
T Consensus         7 ~~d~~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~~wL~~~~~~~   51 (63)
T d1wjia_           7 GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK   51 (63)
T ss_dssp             SSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred             ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence            578999999999999999999999999999999999999998763

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.5e-13  Score=99.15  Aligned_cols=41  Identities=17%  Similarity=0.387  Sum_probs=39.0

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      +|+++|.+||+|||++.+|++||+.|+||+++|++||++|.
T Consensus        18 ~de~~v~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Lls~~   58 (63)
T d1wgna_          18 SERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            46889999999999999999999999999999999999985

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.26  E-value=1.8e-12  Score=99.06  Aligned_cols=45  Identities=24%  Similarity=0.484  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           87 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        87 l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d  131 (365)
                      ..+|+++|.+||+|||++.+|++||++|+||+++|++||++|...
T Consensus        26 ~~~d~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~Av~~Lls~~~~   70 (73)
T d1wiva_          26 SDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGP   70 (73)
T ss_dssp             CSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred             CCCCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence            468999999999999999999999999999999999999999643

>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: NEDD8 ultimate buster-1 (Nub1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=9.6e-13  Score=99.99  Aligned_cols=50  Identities=28%  Similarity=0.337  Sum_probs=46.4

Q ss_pred             hhhhhccccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          214 KRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       214 ~~~~~~~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      ..+++..+++++|++|++|||+++.|+.|||.++|||+.|++.|.+|++.
T Consensus        21 ~~~~q~~~sQesidqLvYMGF~~~~Ae~ALRvfrGnVQlAaQtLahngG~   70 (83)
T d1vega_          21 NNSRQASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS   70 (83)
T ss_dssp             CCSSSCCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred             cccccCCCCHHHHHHHHHhcccHHHHHHHHHHhcccHHHHHHHHHHcCCc
Confidence            34566789999999999999999999999999999999999999999987

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.23  E-value=4.6e-12  Score=96.71  Aligned_cols=44  Identities=20%  Similarity=0.475  Sum_probs=41.3

Q ss_pred             cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           86 QLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        86 ~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      ...++++.|.+|++|||++..|++||++|+|||++|++||++|.
T Consensus        25 ~~~~~ee~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Ll~~~   68 (73)
T d1vg5a_          25 RVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQS   68 (73)
T ss_dssp             CSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             CcCcCHHHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence            35689999999999999999999999999999999999999984

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.5e-12  Score=88.74  Aligned_cols=37  Identities=27%  Similarity=0.517  Sum_probs=35.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e  127 (365)
                      +++|++|++|||++..|++||++|+||+++|++||++
T Consensus         5 e~~i~~L~~MGF~~~~a~~AL~~~~~N~e~A~~~LlS   41 (41)
T d1oqya1           5 ETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT   41 (41)
T ss_dssp             HHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            6889999999999999999999999999999999974

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.4e-12  Score=95.66  Aligned_cols=44  Identities=27%  Similarity=0.487  Sum_probs=40.6

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      +++++.|.+|++|||++..|+.||+.|+||+++|++|||+|.++
T Consensus        17 ~~de~~v~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Lls~~~p   60 (63)
T d1wgna_          17 PSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGP   60 (63)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred             chhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            34788999999999999999999999999999999999998654

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.20  E-value=7.9e-12  Score=95.36  Aligned_cols=44  Identities=36%  Similarity=0.579  Sum_probs=41.2

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      .++++.|.+|++|||+++.|+.||++|+||+++|++|||+|.++
T Consensus        27 ~~~ee~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Ll~~~~p   70 (73)
T d1vg5a_          27 AASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP   70 (73)
T ss_dssp             CCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred             CcCHHHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence            46899999999999999999999999999999999999998654

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.5e-12  Score=86.96  Aligned_cols=38  Identities=32%  Similarity=0.540  Sum_probs=36.0

Q ss_pred             cHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845          222 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       222 ~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      .++.|.+|++|||+++.|+.||++|+||+++|++|||+
T Consensus         4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~N~e~A~~~LlS   41 (41)
T d1oqya1           4 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT   41 (41)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            46789999999999999999999999999999999985

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=9.6e-12  Score=92.58  Aligned_cols=44  Identities=30%  Similarity=0.376  Sum_probs=41.1

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~n-nve~A~e~Ll~~~~~  263 (365)
                      .++++.|.+|++|||++..|+.||+.|+| ++++|++|||+|+++
T Consensus         7 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~d   51 (64)
T d1whca_           7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD   51 (64)
T ss_dssp             CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHHCCCC
Confidence            46788999999999999999999999988 899999999999876

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.1e-11  Score=88.21  Aligned_cols=42  Identities=21%  Similarity=0.359  Sum_probs=39.1

Q ss_pred             ccccHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Q 017845          219 RQAADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGE  260 (365)
Q Consensus       219 ~~~~~~~I~~L~~MGF~~~~A~~AL~~~~n-nve~A~e~Ll~~  260 (365)
                      ..+++..|.+|++|||++..|+.||+.|+| |++.|++|||+|
T Consensus         9 ~~~~~~~l~~L~~MGF~~~~a~~AL~~t~n~~ve~A~~WLl~H   51 (51)
T d2cpwa1           9 TIKHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH   51 (51)
T ss_dssp             SSSCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHcC
Confidence            356888999999999999999999999998 999999999987

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.6e-11  Score=86.27  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=37.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 017845          223 DAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGS  263 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~~A~~AL~~~~n-nve~A~e~Ll~~~~~  263 (365)
                      ++.|.+|++|||++..|++||+.|+| |++.|++|||+|+++
T Consensus         3 p~~v~~L~~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h~~d   44 (51)
T d2crna1           3 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCND   44 (51)
T ss_dssp             CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHHcCCC
Confidence            45689999999999999999999976 999999999999876

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.05  E-value=9.4e-11  Score=91.60  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=41.1

Q ss_pred             cccHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 017845          220 QAADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGS  263 (365)
Q Consensus       220 ~~~~~~I~~L~~MGF~~~~A~~AL~~~~n-nve~A~e~Ll~~~~~  263 (365)
                      .++++.|.+|++|||++..|+.||+.|+| |++.|++|||+|.++
T Consensus        27 ~~d~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~d   71 (84)
T d1veka_          27 VANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD   71 (84)
T ss_dssp             CCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence            46899999999999999999999999876 999999999999887

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=98.83  E-value=1.9e-09  Score=72.73  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=37.2

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      |...+|..|++|||+++.|+.||+.++.|++.|+++|+++
T Consensus         3 pk~~ai~eL~~MGF~e~~A~~AL~k~~wnleaAtN~LLd~   42 (43)
T d2g3qa1           3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            4557899999999999999999999999999999999976

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=98.82  E-value=1.5e-09  Score=73.11  Aligned_cols=40  Identities=30%  Similarity=0.556  Sum_probs=36.8

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      +.+-+|+.|++|||++.+|++||..+++|.+.|+|||.++
T Consensus         3 pk~~ai~eL~~MGF~e~~A~~AL~k~~wnleaAtN~LLd~   42 (43)
T d2g3qa1           3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             cHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            3467899999999999999999999999999999999875

>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.7e-09  Score=72.69  Aligned_cols=40  Identities=30%  Similarity=0.320  Sum_probs=37.8

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE  260 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~  260 (365)
                      .+.++|.+|++|||++..|++|+.+|++|.+.|++|||++
T Consensus         3 ee~~aIeRL~~LGF~r~~viqay~ACdKNEelAaN~L~~~   42 (44)
T d1oqya2           3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ   42 (44)
T ss_dssp             TTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHHc
Confidence            4678999999999999999999999999999999999976

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=6.7e-07  Score=62.62  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=34.9

Q ss_pred             HHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          224 AKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       224 ~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                      ..+.+|.+||| +++.-+.||.+|+|||+.|+++|+++++
T Consensus        10 ~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~~g   49 (50)
T d2dnaa1          10 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQG   49 (50)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence            45899999999 6778889999999999999999998764

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=7.1e-07  Score=60.94  Aligned_cols=37  Identities=30%  Similarity=0.392  Sum_probs=33.5

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           91 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        91 ~~~L~~LmeMGF-~~~~arrALra~~~dve~Av~~L~e  127 (365)
                      ...|++|-+||| ....+.+||++|+|||++|+++|+.
T Consensus         6 ~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~   43 (44)
T d2bwba1           6 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   43 (44)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHhC
Confidence            467999999999 6777889999999999999999985

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=8.8e-07  Score=64.47  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=33.1

Q ss_pred             HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           91 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        91 ~~~L~~LmeMGF~-~~~arrALra~~~dve~Av~~L~e  127 (365)
                      ...|.+|.+|||. ...+.+||++|+|||+.||++|+.
T Consensus        23 ~~QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          23 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            5689999999995 666699999999999999999974

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=1.4e-06  Score=59.50  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=32.4

Q ss_pred             HHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845          224 AKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       224 ~~I~~L~~MGF-~~~~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      ..+.+|.+||| +++.-+.||.+|+|||+.|+++||+
T Consensus         7 ~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~   43 (44)
T d2bwba1           7 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   43 (44)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHhC
Confidence            45899999999 6677889999999999999999986

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=1.3e-06  Score=61.14  Aligned_cols=38  Identities=24%  Similarity=0.284  Sum_probs=34.4

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           91 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        91 ~~~L~~LmeMGF-~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      ...|.+|-+||| +...+.+||.+|+|||++|+++|.++
T Consensus         9 ~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~   47 (50)
T d2dnaa1           9 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS   47 (50)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            567999999999 67778899999999999999999876

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=2.7e-06  Score=61.79  Aligned_cols=37  Identities=38%  Similarity=0.579  Sum_probs=32.7

Q ss_pred             HHHHHHHHhCCCC-HHHHHHHHHHcCCCHHHHHHHHhc
Q 017845          223 DAKIEQLVAMGFE-RPRVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       223 ~~~I~~L~~MGF~-~~~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      ...+.+|.+|||. ++.-+.||+.|+|||+.|+++||.
T Consensus        23 ~~QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          23 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            4568999999995 556699999999999999999985

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=5.8e-06  Score=55.49  Aligned_cols=37  Identities=30%  Similarity=0.369  Sum_probs=32.3

Q ss_pred             HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           91 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        91 ~~~L~~LmeMGF~-~~~arrALra~~~dve~Av~~L~e  127 (365)
                      ...|++|-+|||+ +....+||..++|||++||++|.+
T Consensus         3 ~~QL~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1           3 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            4579999999997 556678999999999999999875

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.91  E-value=9.6e-06  Score=51.40  Aligned_cols=35  Identities=37%  Similarity=0.482  Sum_probs=32.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 017845          224 AKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLL  258 (365)
Q Consensus       224 ~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll  258 (365)
                      ..|.||++|||+.-.|.+||.+.+||++-|+.||+
T Consensus         4 skiaqlvsmgfdpleaaqaldaangdldvaasfll   38 (38)
T d1z96a1           4 SKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL   38 (38)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             hHHHHHHHcCCCHHHHHHHHhhhcCcHHHHHHhhC
Confidence            46899999999999999999999999999999985

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.79  E-value=2e-05  Score=49.90  Aligned_cols=34  Identities=32%  Similarity=0.541  Sum_probs=32.2

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHH
Q 017845           92 ESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL  125 (365)
Q Consensus        92 ~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L  125 (365)
                      .++.||++|||..-+|..||-+.|||++-|..||
T Consensus         4 skiaqlvsmgfdpleaaqaldaangdldvaasfl   37 (38)
T d1z96a1           4 SKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL   37 (38)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             hHHHHHHHcCCCHHHHHHHHhhhcCcHHHHHHhh
Confidence            5789999999999999999999999999999887

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.2e-05  Score=53.83  Aligned_cols=36  Identities=31%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             HHHHHHHhCCCCHH-HHHHHHHHcCCCHHHHHHHHhc
Q 017845          224 AKIEQLVAMGFERP-RVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       224 ~~I~~L~~MGF~~~-~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      ..+.+|.+|||.-. .-..||+.++||++.|++.|+.
T Consensus         4 ~QL~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1           4 VQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            45789999998655 6679999999999999999974

>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: NEDD8 ultimate buster-1 (Nub1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=3.2e-05  Score=58.16  Aligned_cols=44  Identities=30%  Similarity=0.341  Sum_probs=40.8

Q ss_pred             ccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           85 FQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        85 ~~l~vd~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      .++.|+.+.|.||+-|||+..-|+.|||.+.|||+.|.+-|..+
T Consensus        24 ~q~~~sQesidqLvYMGF~~~~Ae~ALRvfrGnVQlAaQtLahn   67 (83)
T d1vega_          24 RQASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHH   67 (83)
T ss_dssp             SSCCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHhcccHHHHHHHHHHhcccHHHHHHHHHHc
Confidence            45788999999999999999999999999999999999988766

>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=1.4e-05  Score=54.02  Aligned_cols=40  Identities=23%  Similarity=0.431  Sum_probs=37.2

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 017845           90 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK  129 (365)
Q Consensus        90 d~~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~  129 (365)
                      +.++|.+|++|||++..+..|-.+|..|-+.|.|||+++.
T Consensus         4 e~~aIeRL~~LGF~r~~viqay~ACdKNEelAaN~L~~~~   43 (44)
T d1oqya2           4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQN   43 (44)
T ss_dssp             THHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHHcc
Confidence            4688999999999999999999999999999999999873

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00012  Score=47.48  Aligned_cols=37  Identities=24%  Similarity=0.494  Sum_probs=32.6

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHhhcC
Q 017845          162 DIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDLT  198 (365)
Q Consensus       162 d~~~l~~L~~MGF~~~~Ar~ALr~t~n-dve~Al~~L~  198 (365)
                      +-+.++.|+.-||+++.+.+||++|++ +++.|+++++
T Consensus         2 nRQMlqdl~~aG~D~~m~iral~qt~~rsieaaie~is   39 (41)
T d2cosa1           2 NRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS   39 (41)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHh
Confidence            446788899999999999999999987 8999999863

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00029  Score=45.61  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=34.4

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHH
Q 017845           89 VPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLV  126 (365)
Q Consensus        89 vd~~~L~~LmeMGF~~~~arrALra~~~-dve~Av~~L~  126 (365)
                      ||-..|+.|..-||++.-+.|||+.||+ ++++|++||-
T Consensus         1 vnRQMlqdl~~aG~D~~m~iral~qt~~rsieaaie~is   39 (41)
T d2cosa1           1 VNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS   39 (41)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHh
Confidence            4677889999999999999999999976 7999999984

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00043  Score=48.74  Aligned_cols=40  Identities=20%  Similarity=0.227  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           89 VPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        89 vd~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      |+.+.|.+|-++ |++..+|+.||..++||++.|++||-++
T Consensus         3 is~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr~k   43 (54)
T d1efub3           3 ITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS   43 (54)
T ss_dssp             CCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            566778888887 9999999999999999999999999665

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00039  Score=53.69  Aligned_cols=41  Identities=27%  Similarity=0.502  Sum_probs=38.0

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~~d  131 (365)
                      .++|.+||+| |-++.+|.-||+-|++|+++||++|++...+
T Consensus        33 ~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg~~~   74 (91)
T d1wj7a1          33 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD   74 (91)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHHHhcCCC
Confidence            5789999999 9999999999999999999999999998654

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.92  E-value=0.00041  Score=49.20  Aligned_cols=40  Identities=25%  Similarity=0.388  Sum_probs=34.5

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 017845           91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKA  130 (365)
Q Consensus        91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~~~  130 (365)
                      .+.|.+|-+. |++..+|+.||..++||++.|++||-++-.
T Consensus         5 ~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~LrkkG~   45 (56)
T d1xb2b1           5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQ   45 (56)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4567777776 999999999999999999999999987643

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.92  E-value=0.00062  Score=47.54  Aligned_cols=37  Identities=30%  Similarity=0.294  Sum_probs=31.7

Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           92 ESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        92 ~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      +.|.+|-+. |++..+|+.||..++||++.|++||-++
T Consensus         4 elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~Lr~~   41 (52)
T d1aipc1           4 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRER   41 (52)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            445666655 9999999999999999999999999665

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0009  Score=47.05  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=34.1

Q ss_pred             CCHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          161 VDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       161 vd~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      |+.+.|.+|.+. |.+.-.|++||..++||++.|++||
T Consensus         3 is~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~L   40 (54)
T d1efub3           3 ITASLVKELRERTGAGMMDCKKALTEANGDIELAIENM   40 (54)
T ss_dssp             CCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            567788999988 9999999999999999999999997

>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0015  Score=42.22  Aligned_cols=36  Identities=39%  Similarity=0.446  Sum_probs=32.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 017845          223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLL  258 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll  258 (365)
                      ...|+.|+.|||++..++.||-.-.-|++-|.+.|+
T Consensus         7 t~kidklca~gf~knavi~alsskswdvetatelll   42 (42)
T d3e46a1           7 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLL   42 (42)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHccccccceeeeeccCccchhhHHHhhC
Confidence            356899999999999999999999999999999875

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.47  E-value=0.0011  Score=46.17  Aligned_cols=35  Identities=34%  Similarity=0.287  Sum_probs=31.6

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          163 IEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       163 ~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      .+.|.+|.+. |++...|++||..++||++.|++||
T Consensus         3 ~elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~L   38 (52)
T d1aipc1           3 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4667888887 8999999999999999999999998

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.42  E-value=0.001  Score=47.07  Aligned_cols=36  Identities=22%  Similarity=0.139  Sum_probs=32.7

Q ss_pred             CHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHhhc
Q 017845          162 DIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL  197 (365)
Q Consensus       162 d~~~l~~L~~M-GF~~~~Ar~ALr~t~ndve~Al~~L  197 (365)
                      +.+.|.+|.+. |.+.-.|++||..++||++.|++||
T Consensus         4 s~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~L   40 (56)
T d1xb2b1           4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWL   40 (56)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            45678888888 9999999999999999999999997

>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.011  Score=38.06  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 017845           92 ESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV  126 (365)
Q Consensus        92 ~~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~  126 (365)
                      .++..|+.|||..+....||-.-..||+.|.+.|.
T Consensus         8 ~kidklca~gf~knavi~alsskswdvetatelll   42 (42)
T d3e46a1           8 KKIENLCAAGFDRNAVIVALSSKSWDVETATELLL   42 (42)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHccccccceeeeeccCccchhhHHHhhC
Confidence            56889999999999999999988899999998763

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.55  E-value=0.0088  Score=45.91  Aligned_cols=39  Identities=21%  Similarity=0.351  Sum_probs=35.5

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 017845          223 DAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEP  261 (365)
Q Consensus       223 ~~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~  261 (365)
                      ...|.+|+.| |-+.+.|.-||.-|++|+++|+++||...
T Consensus        33 ~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg~   72 (91)
T d1wj7a1          33 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN   72 (91)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHHHhcC
Confidence            4568899999 99999999999999999999999999754

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.031  Score=39.63  Aligned_cols=43  Identities=9%  Similarity=0.157  Sum_probs=38.7

Q ss_pred             ccHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 017845          221 AADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGEPGS  263 (365)
Q Consensus       221 ~~~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~~  263 (365)
                      ..++.|..|..|  .++++..+..|++++||++.|++-||.-.+.
T Consensus         8 ~~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd~   52 (59)
T d1wgla_           8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE   52 (59)
T ss_dssp             SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred             CcHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence            467789999999  8999999999999999999999999976554

>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Trinucleotide repeat containing 6c protein, TNRC6C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.06  Score=39.16  Aligned_cols=40  Identities=33%  Similarity=0.396  Sum_probs=35.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          223 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                      ...+.|+..|||.++.+..||+..+-|++.|+--|+...-
T Consensus        15 np~~KQfsnMGf~re~~e~~l~sN~m~L~~a~~~l~dKk~   54 (72)
T d2dkla1          15 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKV   54 (72)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred             hHHHHHHhhcCCcCCChHHhhhccCcchhhcccchhhhhh
Confidence            3457899999999999999999999999999988876543

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.08  E-value=0.038  Score=38.42  Aligned_cols=28  Identities=25%  Similarity=0.468  Sum_probs=24.8

Q ss_pred             ccHHHHHHHHhCCCCHHHHHHHHHHcCC
Q 017845          221 AADAKIEQLVAMGFERPRVIEACRAGGD  248 (365)
Q Consensus       221 ~~~~~I~~L~~MGF~~~~A~~AL~~~~n  248 (365)
                      .+.+.|.+.++|||+++.++.+|+.-+=
T Consensus         8 id~~~V~~f~~mGF~rdKvI~VLrrlgi   35 (55)
T d1ttea1           8 IDHDLIDEFESQGFEKDKIVEVLRRLGV   35 (55)
T ss_dssp             CSHHHHHHHHHHTCCHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHcCCCchhHHHHHHHhCc
Confidence            5778899999999999999999997653

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.42  E-value=0.087  Score=35.20  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             cHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 017845          222 ADAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPG  262 (365)
Q Consensus       222 ~~~~I~~L~~M-GF~~~~A~~AL~~~~nnve~A~e~Ll~~~~  262 (365)
                      ..+.|.+.++. |-++..|+.=|..+++|++.|++--|.+.+
T Consensus         5 ~~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~yfe~gg   46 (46)
T d1v92a_           5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGG   46 (46)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHHhcCC
Confidence            34678888877 999999999999999999999998887653

>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Trinucleotide repeat containing 6c protein, TNRC6C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.099  Score=37.96  Aligned_cols=40  Identities=25%  Similarity=0.408  Sum_probs=35.5

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhhH
Q 017845           93 SLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR  132 (365)
Q Consensus        93 ~L~~LmeMGF~~~~arrALra~~~dve~Av~~L~e~~~d~  132 (365)
                      .+.||..|||+...+-.+|+..+.|++.|+-=|.+.+-+.
T Consensus        17 ~~KQfsnMGf~re~~e~~l~sN~m~L~~a~~~l~dKk~e~   56 (72)
T d2dkla1          17 LIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDV   56 (72)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCS
T ss_pred             HHHHHhhcCCcCCChHHhhhccCcchhhcccchhhhhhcc
Confidence            4679999999999999999998899999999988876553

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.63  E-value=0.081  Score=36.71  Aligned_cols=38  Identities=18%  Similarity=0.293  Sum_probs=34.8

Q ss_pred             cHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 017845          222 ADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLG  259 (365)
Q Consensus       222 ~~~~I~~L~~M--GF~~~~A~~AL~~~~nnve~A~e~Ll~  259 (365)
                      -.+.+.+|.+|  +++.+..+..|++++||++.|++-||.
T Consensus        12 ~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~   51 (54)
T d1mn3a_          12 RKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            45678999999  999999999999999999999999874

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.63  E-value=0.19  Score=35.36  Aligned_cols=43  Identities=16%  Similarity=0.272  Sum_probs=35.3

Q ss_pred             CCHHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHHhhhh
Q 017845           89 VPDESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEKAK  131 (365)
Q Consensus        89 vd~~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e~~~d  131 (365)
                      ..++.|++|.+|  .+...-.+..|++++|+++.||+-|.+-.++
T Consensus         8 ~~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd~   52 (59)
T d1wgla_           8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE   52 (59)
T ss_dssp             SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred             CcHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence            356789999999  6667777888999999999999999876443

>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Migration-inducing protein 19 NBR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.80  E-value=0.27  Score=31.84  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             HHHHHHHHhCCCCHH-HHHHHHHHcCCCHHHHHHHHh
Q 017845          223 DAKIEQLVAMGFERP-RVIEACRAGGDDIHQIMLQLL  258 (365)
Q Consensus       223 ~~~I~~L~~MGF~~~-~A~~AL~~~~nnve~A~e~Ll  258 (365)
                      ....++|.+|||.-. .-.+=|+..++|+..++.-|+
T Consensus         3 ~~lM~~L~EMGF~DR~lNq~LL~KH~~nl~~vV~eLl   39 (41)
T d2cp8a1           3 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELL   39 (41)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCcchhHHHHHHHHHccCcHHHHHHHHH
Confidence            456789999999655 455666899999999998775

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.76  E-value=0.37  Score=31.92  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=33.3

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 017845           91 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEE  128 (365)
Q Consensus        91 ~~~L~~LmeM-GF~~~~arrALra~~~dve~Av~~L~e~  128 (365)
                      ++.|++.++. |=++..|+.-|.++++|++.||+-.++.
T Consensus         6 ~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~yfe~   44 (46)
T d1v92a_           6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED   44 (46)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence            4678888876 9999999999999999999999987764

>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Sequestosome 1 (Sqstm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.94  E-value=0.081  Score=36.19  Aligned_cols=37  Identities=35%  Similarity=0.473  Sum_probs=28.9

Q ss_pred             HHHHHHHHhCCCCHHHHHH--HHHHhCCCHHHHHHHHHH
Q 017845           91 DESLSLVMSMGFKEQDAKR--ALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arr--ALra~~~dve~Av~~L~e  127 (365)
                      .++|.|++.|||+-.-.-+  =|.+.++|+.+|+.-|+-
T Consensus        11 ~~al~qM~aMGFsneGGWLt~LL~skn~dI~~aLD~iq~   49 (52)
T d2k0bx1          11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQY   49 (52)
T ss_dssp             HHHHHHHHHHTCCCSSSCHHHHHHHTTSCHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCcchHHHHHHHHcCCCHHHHHHHHhh
Confidence            5789999999999765543  466678999999887643

>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Sequestosome 1 (Sqstm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.29  Score=33.33  Aligned_cols=36  Identities=31%  Similarity=0.535  Sum_probs=28.7

Q ss_pred             HHHHHHHHhCCCCHHH--HHHHHHhcCCCHHHHHhhcC
Q 017845          163 IEKIKELVSIGFEKEL--VAEALRRNENDSQKALDDLT  198 (365)
Q Consensus       163 ~~~l~~L~~MGF~~~~--Ar~ALr~t~ndve~Al~~L~  198 (365)
                      .+.|.+++.|||+-+-  ..+-|...++|+.+|++.|+
T Consensus        11 ~~al~qM~aMGFsneGGWLt~LL~skn~dI~~aLD~iq   48 (52)
T d2k0bx1          11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ   48 (52)
T ss_dssp             HHHHHHHHHHTCCCSSSCHHHHHHHTTSCHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCcchHHHHHHHHcCCCHHHHHHHHh
Confidence            3689999999998764  45557778899999999763

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.93  E-value=0.37  Score=33.20  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=25.6

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHhC
Q 017845           88 QVPDESLSLVMSMGFKEQDAKRALRICS  115 (365)
Q Consensus        88 ~vd~~~L~~LmeMGF~~~~arrALra~~  115 (365)
                      -+|.+.|.+...|||++.-..-+||.-+
T Consensus         7 Gid~~~V~~f~~mGF~rdKvI~VLrrlg   34 (55)
T d1ttea1           7 GIDHDLIDEFESQGFEKDKIVEVLRRLG   34 (55)
T ss_dssp             CCSHHHHHHHHHHTCCHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHcCCCchhHHHHHHHhC
Confidence            4799999999999999999999999764

>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Migration-inducing protein 19 NBR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.61  E-value=0.54  Score=30.31  Aligned_cols=36  Identities=17%  Similarity=0.327  Sum_probs=27.4

Q ss_pred             HHHHHHHHhCCCCHHHHH-HHHHHhCCCHHHHHHHHH
Q 017845           91 DESLSLVMSMGFKEQDAK-RALRICSQDVGSAIDFLV  126 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~ar-rALra~~~dve~Av~~L~  126 (365)
                      ...++.|.+|||.-.+-- +=|+..++|+..+|+=|.
T Consensus         3 ~~lM~~L~EMGF~DR~lNq~LL~KH~~nl~~vV~eLl   39 (41)
T d2cp8a1           3 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELL   39 (41)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCcchhHHHHHHHHHccCcHHHHHHHHH
Confidence            456889999999876654 456777889998887664

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.27  E-value=0.61  Score=32.07  Aligned_cols=37  Identities=11%  Similarity=0.178  Sum_probs=31.1

Q ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 017845           91 DESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVE  127 (365)
Q Consensus        91 ~~~L~~LmeM--GF~~~~arrALra~~~dve~Av~~L~e  127 (365)
                      .+.+.+|.+|  +++..-.+-.|++++|+++.|++-|.+
T Consensus        13 ~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~   51 (54)
T d1mn3a_          13 KDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            5678899999  666777777899999999999998875

>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: DNA helicase RuvA subunit, C-terminal domain
family: DNA helicase RuvA subunit, C-terminal domain
domain: DNA helicase RuvA subunit, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.95  E-value=0.59  Score=31.25  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=22.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhC
Q 017845           91 DESLSLVMSMGFKEQDAKRALRICS  115 (365)
Q Consensus        91 ~~~L~~LmeMGF~~~~arrALra~~  115 (365)
                      +++++.|+..||+..+|+++++...
T Consensus         6 ~eAi~AL~~LGY~~~ea~~av~~i~   30 (48)
T d1cuka1           6 QEAVARLVALGYKPQEASRMVSKIA   30 (48)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence            6889999999999999999998764

>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin carboxyl-terminal hydrolase 25
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.05  E-value=3  Score=30.26  Aligned_cols=44  Identities=14%  Similarity=0.258  Sum_probs=35.6

Q ss_pred             cHHHHHHHHhC-CCCHH-HHHHHHHHcCCCHHHHHHHHhcCCCCCC
Q 017845          222 ADAKIEQLVAM-GFERP-RVIEACRAGGDDIHQIMLQLLGEPGSNP  265 (365)
Q Consensus       222 ~~~~I~~L~~M-GF~~~-~A~~AL~~~~nnve~A~e~Ll~~~~~~~  265 (365)
                      .+..+++|.+. |..-. .-..||++.+||+..|+-+|.+.+...+
T Consensus        24 qQ~lLNQLrEITGIqD~q~L~~ALkas~Gdl~~AV~~LT~~~~~~P   69 (80)
T d1vdla_          24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKTP   69 (80)
T ss_dssp             HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHhcCCCHHHHHHHHhcCCCCCC
Confidence            46778888888 87555 4568999999999999999998776643