Citrus Sinensis ID: 017849

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVSSSLC
Secondary Structure (PSIPRED)
ccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHccccccccEEEEEEEccccccHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccccccEEEEcccccEEEEEEccccccccHHHHHHHHHHcccEEcccccEEEEEEEEcHHHHHHHHccccccccccccHHHHHHHcccccccEEccccccccccccccHHHHHHHHHHccccccccccccccccccccccEEEEEEEEccccEEEEEccccccccEEcccEEccccEEEcccEEEEccEEccccEEccccEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHccccccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEccEEccccHHHHHHHHHHcccEEEEEEEEcccccccccccccccccccccccccEEEEcccccEEEEEEcccccccccEEEcEEEEcccccEEEcccEccEEEEEcHHHHHHcccccccccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHcccccccccccccccEEccccccccccEEEEcccEEEcccEEEcccEEEEccEEEcccEEEcccEEEcccEEEccccEEcccEEEEcccc
Coil and Loop (DISEMBL)
MDFQVVVLaggtskklvplvskevpkallpvanrpVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVatvpedvgtAGALRAIAHHLTAKDVLVvsgdlvsdvppgavtaahRRHDAVVTAMICSvpvsglseagssgakdktkkpgryniigmdptKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKseilingapqgqqakengndkvSYRIlanastpsfhelyalgpngsapvrrthKCCVYIASNSKYCVRLNSIQAFMDINRDVIGeanhlsgynfsaqnniihpsaelgskttvssslc
Flexible Loop (DISEMBL)
mdfqvvvlaggtskklvplvskevpkallpvanRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVsglseagssgakdktkkpgryniigmdptKQFLLHIATgaelekdtriRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILingapqgqqakengNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHpsaelgskttvssslc
Low Complexity Region (SEG)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKdvlvvsgdlvsdvPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVSSSLC
Disordered region (IsUnstruct)
***QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVP*********************YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILIN****************SYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNII*****************
Disordered Region (DISOPRED)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV***************KKPGRYNIIGMDPTKQFLLHIATGAE****TRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVSSSLC
Disordered Region (DISEMBL)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSG*************KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAEL***********
Disordered Region (DISPRO)
*DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS************KTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVSSSLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVSSSLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q54FQ8	440	Translation initiation fa	yes	no	0.923	0.765	0.260	7e-29
P70541	452	Translation initiation fa	yes	no	0.920	0.743	0.291	2e-28
A5PJI7	452	Translation initiation fa	yes	no	0.953	0.769	0.278	4e-27
Q4R6T3	452	Translation initiation fa	N/A	no	0.953	0.769	0.279	4e-27
Q9NR50	452	Translation initiation fa	yes	no	0.953	0.769	0.274	4e-26
P56288	458	Probable translation init	yes	no	0.657	0.524	0.295	3e-21
P80361	404	Probable translation init	yes	no	0.926	0.836	0.235	9e-10
P56287	678	Probable translation init	no	no	0.627	0.337	0.216	4e-08
Q5B1J4	364	Mannose-1-phosphate guany	yes	no	0.561	0.563	0.239	8e-08
Q4I1Y5	364	Mannose-1-phosphate guany	yes	no	0.550	0.552	0.224	2e-07

>sp|Q54FQ8|EI2BG_DICDI Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1

 Score =  128 bits (322), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 183/365 (50%), Gaps = 28/365 (7%)

Query: 3   FQVVVLA---GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIK---DLIVVV 56
           FQVV+LA      + KL P +   +P +LLP+ANRP++SY LE LE +  +   + +++V
Sbjct: 6   FQVVILATDKASGNSKLEP-IDATIPHSLLPIANRPLISYQLEFLEKAGFETKSEPVIIV 64

Query: 57  EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV-S 115
               +  ++  ++S  Y  ++ VE   + + + T   L  I   +  +  +V++ +LV  
Sbjct: 65  VNETSQEKIKQYVSEIYKGKIEVEFFVLKDQLATCEILYRIRDKIRLEYFMVLNANLVLE 124

Query: 116 DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY-NIIGMDPTKQF 174
           D     +   HR+ ++ +T ++   P   + + G    +  TK+   + + I ++   Q 
Sbjct: 125 DTFIRQMADLHRKEESSLTVLL-KPPTPKVEQKGKGATETSTKQDKLFTDYIALEEKSQK 183

Query: 175 LLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL-DQKDK---F 230
           ++ +    E+E+D    KS+L+    + I  +L D  +Y F+R VL  ++ DQK+K   F
Sbjct: 184 IVMMEPATEVEEDLNFNKSLLKYFPNVTIYTNLQDTQLYIFSRWVLDLIIEDQKEKYPLF 243

Query: 231 QSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP--SFHELYAL 288
             +K+ ++PYL+  Q+ +       P    +  N N  +S + +++ ++P   F EL   
Sbjct: 244 FDIKKHLIPYLLSCQIPNIKRKRALP---ASAFNQNQTLS-QTMSSTTSPFDQFSEL--- 296

Query: 289 GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSGYNFSAQNNI 347
               +A   +T KC  ++     YC+ +N+I+ +  INRD+  G+  +L     S +N  
Sbjct: 297 ----NAQKNKTIKCFAHLLKKEGYCMNVNTIKNYQQINRDIAKGDLQYLPNEPKSEKNFF 352

Query: 348 IHPSA 352
           I P+A
Sbjct: 353 IDPTA 357

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Dictyostelium discoideum (taxid: 44689)

>sp|P70541|EI2BG_RAT Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 180/370 (48%), Gaps = 34/370 (9%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVV----- 54

Query: 61  AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
               V   + A +  +L  ++  +P+  D+GTA +LR I   L   DVLV+  DL++DV 
Sbjct: 55  TTKDVQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKT-DVLVLGCDLITDVA 113

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              V    R +DA +  ++        S     G K K K   + + IG+D T + LL +
Sbjct: 114 LHEVVDLFRAYDASLAMLMRK---GQESTEPVPGQKGKKKTVEQRDFIGVDSTGKRLLFM 170

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
           A  A+L+++  I+ SIL+   ++  +  L+DAH+Y   + V+  +++ K    S++ +++
Sbjct: 171 ANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENK-SITSIRSELI 229

Query: 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA--PV 296
           PYLVR Q  S      + Q Q+ KE    K   + L   S         L P  +     
Sbjct: 230 PYLVRKQFSSA----SSQQRQEDKEEDLKKKEPKSLDIYSFIKKDNTLTLAPYDACWNAF 285

Query: 297 RRTH---------KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
           RR           +C V+I      C R++++  +M+ NR V    + L       + ++
Sbjct: 286 RRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSVL-----CPEESM 339

Query: 348 IHPSAELGSK 357
           IHPSA++ +K
Sbjct: 340 IHPSAQIANK 349

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Rattus norvegicus (taxid: 10116)

>sp|A5PJI7|EI2BG_BOVIN Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1

 Score =  122 bits (306), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 190/391 (48%), Gaps = 43/391 (10%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IV+     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTS-SIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVI----- 54

Query: 61  AALRVGGWISAAYVD-RLHVEVATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDV 117
               V   + A +   ++ +++  +P+  D+GTA +LR I   L   DVLV+S DL++DV
Sbjct: 55  TTKDVQKALCADFNKMKMKLDIVCIPDEADMGTADSLRHIYQKLKT-DVLVLSCDLITDV 113

Query: 118 PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLH 177
               V    R HDA + AM+       L      G K K K   + + +G+D T + LL 
Sbjct: 114 ALHEVVDLFRAHDASL-AMLMRKGQESLEPV--PGQKGKKKAVEQRDFVGVDSTGKRLLF 170

Query: 178 IATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDV 237
           +A  A+L+++  I+ SIL+   ++     L+DAH+Y   + V+  +++ K    S++ ++
Sbjct: 171 MANEADLDEELIIKGSILQKHPRIRFHTGLVDAHLYCLKKYVVDFLMENK-SITSIRSEL 229

Query: 238 LPYLVRSQLKSEILINGAPQGQQAKENGN--------DKVSYRILANASTPSFHELY--- 286
           +PYLVR Q  S      + QGQ+ KE           D  S+   AN  T + ++     
Sbjct: 230 IPYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLTLAPYDTCWNA 285

Query: 287 ALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-------------IGEA 333
             G +     R   +C V+I      C R++++  +M+ NR V             I  +
Sbjct: 286 CRGDSWEGLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVSKLLPVICPEESLIHSS 344

Query: 334 NHLSGYNFSAQNNIIHPSAELGSKTTVSSSL 364
             +   +    +++I P  ++G K+++  S+
Sbjct: 345 AQIVSKHMVGADSLIGPDTQVGEKSSIKHSV 375

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Bos taurus (taxid: 9913)

>sp|Q4R6T3|EI2BG_MACFA Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1

 Score =  122 bits (306), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 186/390 (47%), Gaps = 42/390 (10%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLP  N+P++ Y L  LE    +++IVV     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPAGNKPLIWYPLNLLERVGFEEVIVV----- 54

Query: 61  AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
               V   + A +  ++  ++  +P+D  +GTA +LR +   L   DVLV+S DL++DV 
Sbjct: 55  TTRDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKT-DVLVLSCDLITDVA 113

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              V    R +DA + AM+       L      G K K K   + + IG+D T + LL +
Sbjct: 114 LHEVVDLFRAYDASL-AMLMRKGQDSLEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
           A  A+L+++  I+ SIL+   ++    DL+DAH+Y   + V+ + L +     S++ +++
Sbjct: 171 ANEADLDEELVIKGSILQKYPRIRFHTDLVDAHLYCLKKYVV-DFLMENGSITSIRSELI 229

Query: 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
           PYLVR Q  S      + QGQ+ KE    K        Y  L  A+T +     A     
Sbjct: 230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFLKEANTLNLAPYDACWNAC 285

Query: 289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-------------IGEAN 334
            G       R   +C V+I      C R++++  +M+ NR V             +  + 
Sbjct: 286 RGDRWEDLPRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSALCPEEPLVHSSA 344

Query: 335 HLSGYNFSAQNNIIHPSAELGSKTTVSSSL 364
            +   +    +++I P  ++G K+++  S+
Sbjct: 345 QIVSKHLVGVDSLIGPETQIGEKSSIKRSV 374

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Macaca fascicularis (taxid: 9541)

>sp|Q9NR50|EI2BG_HUMAN Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1

 Score =  119 bits (298), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 186/390 (47%), Gaps = 42/390 (10%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVV----- 54

Query: 61  AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
               V   + A +  ++  ++  +P+D  +GTA +LR I   L   DVLV+S DL++DV 
Sbjct: 55  TTRDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKT-DVLVLSCDLITDVA 113

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              V    R +DA + AM+       +      G K K K   + + IG+D T + LL +
Sbjct: 114 LHEVVDLFRAYDASL-AMLMRKGQDSIEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
           A  A+L+++  I+ SIL+   ++     L+DAH+Y   + ++ + L +     S++ +++
Sbjct: 171 ANEADLDEELVIKGSILQKHPRIRFHTGLVDAHLYCLKKYIV-DFLMENGSITSIRSELI 229

Query: 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
           PYLVR Q  S      + QGQ+ KE    K        Y  +  A+T +     A     
Sbjct: 230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNAC 285

Query: 289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-------------IGEAN 334
            G       R   +C V+I      C R++++  +M+ NR V             +  + 
Sbjct: 286 RGDRWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSA 344

Query: 335 HLSGYNFSAQNNIIHPSAELGSKTTVSSSL 364
            +   +    +++I P  ++G K+++  S+
Sbjct: 345 QIVSKHLVGVDSLIGPETQIGEKSSIKRSV 374

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Homo sapiens (taxid: 9606)

>sp|P56288|EI2BG_SCHPO Probable translation initiation factor eIF-2B subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif223 PE=1 SV=2

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 132/257 (51%), Gaps = 17/257 (6%)

Query: 1   MDFQVVVLAGGTSKKLVPLV-SKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV-VEG 58
           ++FQ VV AG     L PL  S  +PKALLP+ N+P+L Y L  LE +     I++ +E 
Sbjct: 37  IEFQAVVFAG-FGNSLYPLTGSDALPKALLPIGNKPMLHYPLYWLEAAGFTSAILICMEE 95

Query: 59  ADAALRVGGWISAAYVD--RLHVEVATVPEDV-GTAGALRAIAHHLTAKDVLVVSGDLVS 115
           A+A   +  W+ + Y    R+HVE  T+ +D   +A ALRA++ HL   D + +S D + 
Sbjct: 96  AEA--HINAWLRSGYEGHMRIHVEAPTILDDSKSSADALRAVS-HLIKNDFVCLSCDSIV 152

Query: 116 DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFL 175
            +PP       R  +   +A+    PV       S   +   K+     +IG++     L
Sbjct: 153 GLPPIYGLDKFRLDNP--SALAVYSPVLKYEHITSQSKEIDAKQ-----LIGIEEKTSRL 205

Query: 176 LHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ 235
           L+  + A++  D   R S+L    ++ +  +L DAH++ F   V+ +++ +K+   S++ 
Sbjct: 206 LYAKSSADVGSDFTFRMSLLWKHPRVTLNTNLSDAHIFVFKHWVI-DLIREKESISSIRG 264

Query: 236 DVLPYLVRSQLKSEILI 252
           D++PYLV+ Q +    +
Sbjct: 265 DLIPYLVKCQYQKSFTV 281

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P80361|EI2BG_CAEEL Probable translation initiation factor eIF-2B subunit gamma OS=Caenorhabditis elegans GN=ppp-1 PE=2 SV=3

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 36/374 (9%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           +++ +GG ++  +P++++ V K LLPV   P+  Y L  L  + I D+ + V        
Sbjct: 7   ILLCSGGGTR--MPVLTRHVQKCLLPVVGVPMFLYPLSSLLRTGITDIKIFVREVLQLTL 64

Query: 65  VGGWISAAYVDRL--HVEVATV-PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGA 121
                 +  +++   H+E   V  ED GTA  L+   H    KD L+VS D +SD     
Sbjct: 65  EKEVKKSKLLEKYPAHIEYICVNQEDFGTADLLKN-HHSKITKDALIVSCDFISDASLIP 123

Query: 122 VTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATG 181
           +    R  ++ + A+I    V+    A + G+  K+KKP   +++ +  +   L  +   
Sbjct: 124 LVDFFRATNSTLVALIADTCVN----APAPGS--KSKKPKATDVMAIVESTGQLAFLCGD 177

Query: 182 AELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYL 241
            + +    + KS L+    + + +   D H+YA    VL   L +     S K D +P L
Sbjct: 178 DDFDAPLVMEKS-LKIFPSIKLTSKYNDCHVYAIRHKVLLN-LSKSKHISSFKADFVPLL 235

Query: 242 VRSQLKSEILINGAPQGQQAKENG------NDKVSYRILANASTPSFHELYALGPNGSAP 295
           +  Q + +  I      +   ENG      N   SY  +  A   SF  L     NG   
Sbjct: 236 IDKQFEPDSDIKCFAY-RLPHENGFVTAHANTLGSYFEVNKAIQKSFTRLMEYRGNGKNF 294

Query: 296 VRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLS-----GYNFSAQNNIIHP 350
             +T K    IA++       + I+   +I++D + + + +S     G     + +II  
Sbjct: 295 NYKTDK----IAAHE------SRIEESAEIDKDSVIKRSFISDNCRIGEKTKLKESIIAK 344

Query: 351 SAELGSKTTVSSSL 364
              +G+  ++S+S+
Sbjct: 345 GVVIGNGASISNSI 358

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Caenorhabditis elegans (taxid: 6239)

>sp|P56287|EI2BE_SCHPO Probable translation initiation factor eIF-2B subunit epsilon OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif225 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 110/254 (43%), Gaps = 25/254 (9%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
            Q +VL+   + +  PL + + P+ LLP+AN P++ Y  E L L+ ++++ V        
Sbjct: 18  LQAIVLSDSYNYRFRPL-TLDKPRCLLPLANTPLIEYTFEFLALAGVQEVYVFCCAHAGQ 76

Query: 63  LRVGGWISAAYVDRLHVEVATVPEDVGT---------AGALRAI-AHHLTAKDVLVVSGD 112
           +R        Y+++    + + P  V T           ALR + +  L   D ++VSGD
Sbjct: 77  IR-------EYIEKSKWNLPSSPFSVNTIVSRESLSVGDALRELDSKQLITSDFILVSGD 129

Query: 113 LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTK 172
           +VS+VP   V   HR+        I ++ V   S    + A+ ++      ++  +D   
Sbjct: 130 VVSNVPLNEVLKEHRKRREDDKNAIMTMVVREASPFHRTRARTES------SVFVIDKKT 183

Query: 173 QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQS 232
              +H       +    +   I     ++++R DL+D  +   +  V     +  D +Q 
Sbjct: 184 SQCVHYQANERGKHYVSMDPEIFNEHEELEVRNDLIDCQIDICSNDVPALFTENFD-YQD 242

Query: 233 LKQDVLPYLVRSQL 246
           +++D +  ++ S L
Sbjct: 243 IRKDFVYGVLTSDL 256

Subunit of the guanine nucleotide exchange factor for eIF-2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5B1J4|MPG1_EMENI Mannose-1-phosphate guanyltransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mpg1 PE=3 SV=2

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 111/251 (44%), Gaps = 46/251 (18%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVE-GADA 61
            + ++L GG   +L PL +  +PK L+   NRP++ + +E L  + + D+++ V    D 
Sbjct: 1   MKALILVGGFGTRLRPL-TLTLPKPLVEFGNRPMILHQVESLAAAGVTDIVLAVNYRPDV 59

Query: 62  ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD---VLVVSGDLVSDVP 118
            +         Y  ++   V T P  +GTAG L+ +A  + AKD     V++ D++ D P
Sbjct: 60  MVSALKKYEEQYNVKIEFSVETEP--LGTAGPLK-LAESILAKDDSPFFVLNSDVICDYP 116

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              +   H+RH    T ++                  K  +P +Y ++   P        
Sbjct: 117 FQQLAEFHKRHGDEGTIVVT-----------------KVDEPSKYGVVVHKPNHP----- 154

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
                    +RI + + + V   +   + ++A MY  N SVL+ +   + +  S++Q+  
Sbjct: 155 ---------SRIDRFVEKPV---EFVGNRINAGMYILNPSVLKRI---ELRPTSIEQETF 199

Query: 239 PYLVR-SQLKS 248
           P +VR  QL S
Sbjct: 200 PAIVRDGQLHS 210

Involved in cell wall synthesis where it is required for glycosylation. Involved in cell cycle progression through cell-size checkpoint.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q4I1Y5|MPG1_GIBZE Mannose-1-phosphate guanyltransferase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=MPG1 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 115/249 (46%), Gaps = 48/249 (19%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++L GG   +L PL +  VPK L+  AN+P++ + +E L  + + D+++ V      +  
Sbjct: 4   LILVGGYGTRLRPL-TLSVPKPLVEFANKPMIVHQIEALVAAGVTDIVLAVNYRPEVMEK 62

Query: 66  GGWISAAYVDR--LHVEVATVPEDVGTAGALRAIAHHLTAKD---VLVVSGDLVSDVPPG 120
                A Y ++  +++E +   E + TAG L+ +A  + AKD     V++ D++ D P  
Sbjct: 63  ---FLAEYEEKFGINIEFSVETEPLDTAGPLK-LAERILAKDDSPFFVLNSDVICDFPFE 118

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
            + A H+ H    T ++                  K ++P +Y ++   P  + L+    
Sbjct: 119 DLLAFHKSHGNEGTIVVT-----------------KVEEPSKYGVVVHQPGHRSLI---- 157

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
                 D  + K +       +   + ++A +Y FN S+L  +   + +  S++++  P 
Sbjct: 158 ------DRFVEKPV-------EFVGNRINAGLYIFNTSILDRI---ELRPTSIEKETFPA 201

Query: 241 LVR-SQLKS 248
           +V+ +QL S
Sbjct: 202 MVKDNQLHS 210

Involved in cell wall synthesis where it is required for glycosylation. Involved in cell cycle progression through cell-size checkpoint.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
224103999	458	predicted protein [Populus trichocarpa]	0.975	0.777	0.788	1e-168
359494464	463	PREDICTED: translation initiation factor	0.978	0.771	0.817	1e-167
296082668	461	unnamed protein product [Vitis vinifera]	0.978	0.774	0.817	1e-167
356525249	459	PREDICTED: translation initiation factor	0.978	0.777	0.769	1e-161
356512489	468	PREDICTED: translation initiation factor	0.994	0.775	0.75	1e-159
224059672	508	predicted protein [Populus trichocarpa]	0.975	0.700	0.696	1e-158
357518837	565	Translation initiation factor eIF-2B sub	0.978	0.631	0.744	1e-155
449452670	461	PREDICTED: translation initiation factor	0.978	0.774	0.747	1e-152
79328173	456	translation initiation factor eIF-2B gam	0.975	0.780	0.699	1e-139
297812131	456	acyltransferase [Arabidopsis lyrata subs	0.975	0.780	0.699	1e-138

>gi|224103999|ref|XP_002313277.1| predicted protein [Populus trichocarpa] gi|222849685|gb|EEE87232.1| predicted protein [Populus trichocarpa]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 290/368 (78%), Positives = 325/368 (88%), Gaps = 12/368 (3%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGT KKL+PLVSK+VPKALLPVANRPVLSYVLEQLELSN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGTCKKLLPLVSKDVPKALLPVANRPVLSYVLEQLELSNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL VGGWIS AYVDRLHVEVA VPEDVGTAGALRAIAHHLTA D+LVVSGDLVSD+PPG
Sbjct: 61  AALHVGGWISNAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVSDIPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           A+ A HR+HDAVVT M+CS PVSG +E+GSSG KDK KKP R+NIIG+DP+KQFLLHIAT
Sbjct: 121 ALAAVHRQHDAVVTTMLCSAPVSGPTESGSSGGKDKIKKPRRHNIIGLDPSKQFLLHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EK+ RI+KSILRAV QM+IRADLMDAHMYAF RSVLQEVLD+KDKF+SLK+D+LPY
Sbjct: 181 GAEVEKEIRIQKSILRAVDQMEIRADLMDAHMYAFKRSVLQEVLDEKDKFRSLKEDMLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQ+KSE+L+NGAPQ +    NGN+KVS         RIL NASTPSFH+LYA   N 
Sbjct: 241 LVRSQMKSEVLLNGAPQAK----NGNEKVSSQNNQAVVSRILTNASTPSFHDLYASSNND 296

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S+ VRR HKCC YIAS S+YC RLNSIQAF DINRDVIG+A+HLSGY+FS+ NNIIHPSA
Sbjct: 297 SSLVRRIHKCCAYIASESRYCQRLNSIQAFSDINRDVIGDASHLSGYSFSSHNNIIHPSA 356

Query: 353 ELGSKTTV 360
           +LGS+TTV
Sbjct: 357 QLGSRTTV 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494464|ref|XP_002266884.2| PREDICTED: translation initiation factor eIF-2B subunit gamma [Vitis vinifera]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 301/368 (81%), Positives = 325/368 (88%), Gaps = 11/368 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLE LE SN+KDLIVVVEG D
Sbjct: 3   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLELLEHSNLKDLIVVVEGQD 62

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AALRVGGWIS AYVDRLHVEVA VPEDVGTAGALRAIAHHLTA D+LVVSGDLV DV PG
Sbjct: 63  AALRVGGWISGAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVCDVSPG 122

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV AAHRRH A VTAM+CSVPVSG  E+GSS  KDKTKKPG  NIIG+DPTKQFLL+IAT
Sbjct: 123 AVAAAHRRHGAAVTAMLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIAT 182

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           G E+E+D R++KSILRAVGQM+IRADLMDAH+YAF R+VLQEVLDQKD FQSL+QDVLPY
Sbjct: 183 GPEIERDIRVQKSILRAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPY 242

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQL+SE+ +NGAP     +ENG+DKV          ++LA  STPSFHELYA+GPNG
Sbjct: 243 LVRSQLRSELSLNGAP---HTEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNG 299

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           SAPVRRTHKCCVYIAS  KYC RLNSIQAF DINRDVIGEA+HLSGY+FSAQNNIIHPSA
Sbjct: 300 SAPVRRTHKCCVYIASQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSA 359

Query: 353 ELGSKTTV 360
           ELGSKTTV
Sbjct: 360 ELGSKTTV 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082668|emb|CBI21673.3| unnamed protein product [Vitis vinifera]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 301/368 (81%), Positives = 325/368 (88%), Gaps = 11/368 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLE LE SN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLELLEHSNLKDLIVVVEGQD 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AALRVGGWIS AYVDRLHVEVA VPEDVGTAGALRAIAHHLTA D+LVVSGDLV DV PG
Sbjct: 61  AALRVGGWISGAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVCDVSPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV AAHRRH A VTAM+CSVPVSG  E+GSS  KDKTKKPG  NIIG+DPTKQFLL+IAT
Sbjct: 121 AVAAAHRRHGAAVTAMLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           G E+E+D R++KSILRAVGQM+IRADLMDAH+YAF R+VLQEVLDQKD FQSL+QDVLPY
Sbjct: 181 GPEIERDIRVQKSILRAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQL+SE+ +NGAP     +ENG+DKV          ++LA  STPSFHELYA+GPNG
Sbjct: 241 LVRSQLRSELSLNGAP---HTEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           SAPVRRTHKCCVYIAS  KYC RLNSIQAF DINRDVIGEA+HLSGY+FSAQNNIIHPSA
Sbjct: 298 SAPVRRTHKCCVYIASQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSA 357

Query: 353 ELGSKTTV 360
           ELGSKTTV
Sbjct: 358 ELGSKTTV 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525249|ref|XP_003531239.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Glycine max]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/368 (76%), Positives = 315/368 (85%), Gaps = 11/368 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVL GG SKKL+PLVS+E+P ALLPVANRPVLSYVLE LELSN+KDLIVVVEG +
Sbjct: 1   MDFQVVVLGGGLSKKLLPLVSQELPNALLPVANRPVLSYVLEYLELSNLKDLIVVVEGEE 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           A L VG WIS AY DRLHVEVA VPEDVGTAGA+RAI+HHLTAKD+LVVSGDLV+DVP G
Sbjct: 61  AVLHVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDAVVTAM+CS PVSG SE+ SSG KDK KKPGRY++IG+DPTKQFL+HIAT
Sbjct: 121 AVAATHRRHDAVVTAMLCSAPVSGPSESVSSGGKDKIKKPGRYDLIGLDPTKQFLVHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD RI+KS+L AVGQ++IRADLMDAH+YAF RSVLQEVLDQK  F SLK DVLPY
Sbjct: 181 GAEVEKDLRIQKSMLPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQLKSE+L+NG P   QA+ENG +KV          +ILANAS P FH   ALGP+G
Sbjct: 241 LVRSQLKSEVLLNGMP---QAEENGTEKVISQSNQQMLSQILANASEPIFHLRNALGPHG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S   RRTHKCCVYIA +SKYC RLNSIQA+ DINRDV GEA+HLSGY+FSAQNNIIHPSA
Sbjct: 298 STSDRRTHKCCVYIAGSSKYCARLNSIQAYSDINRDVTGEASHLSGYSFSAQNNIIHPSA 357

Query: 353 ELGSKTTV 360
           ELG+KTTV
Sbjct: 358 ELGAKTTV 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512489|ref|XP_003524951.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Glycine max]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/368 (75%), Positives = 314/368 (85%), Gaps = 5/368 (1%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVL GG SKKL+PLVS+E+P ALLP+ANRPVLSYVLE LELSN+KDLIVVVEG +
Sbjct: 1   MDFQVVVLGGGVSKKLIPLVSQELPNALLPLANRPVLSYVLEYLELSNLKDLIVVVEGEE 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL VG WIS AY DRLHVEVA VPEDVGTAGA+RAI+HHLTAKD+LVVSGDLV+DVP G
Sbjct: 61  AALHVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDAVVTAM+CS PVSG  E+ SSG KDKTKKPGRY++IG+DPTKQFL+HIAT
Sbjct: 121 AVAATHRRHDAVVTAMLCSAPVSGPLESVSSGGKDKTKKPGRYDLIGLDPTKQFLVHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD RI+KS+L AVGQ++IRADLMDAH+YAF RSVLQEVLDQK  F SLK DVLPY
Sbjct: 181 GAEVEKDLRIQKSMLPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAK-----ENGNDKVSYRILANASTPSFHELYALGPNGSAP 295
           LVRSQLKSE+L+NG PQ ++ +        N ++  +ILANAS P+FH  +ALGP GS  
Sbjct: 241 LVRSQLKSEVLLNGIPQAEENRTEKVISQSNQQMLSQILANASEPTFHLRHALGPYGSTF 300

Query: 296 VRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELG 355
            RRTHKCCVYIA +SKYC RLNSIQA+ DINRDVIGEA+ LSGY+FS  NNIIHPSAELG
Sbjct: 301 DRRTHKCCVYIAGSSKYCARLNSIQAYTDINRDVIGEASRLSGYSFSTLNNIIHPSAELG 360

Query: 356 SKTTVSSS 363
           +KT +S S
Sbjct: 361 AKTPLSIS 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059672|ref|XP_002299963.1| predicted protein [Populus trichocarpa] gi|222847221|gb|EEE84768.1| predicted protein [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/418 (69%), Positives = 325/418 (77%), Gaps = 62/418 (14%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSKKL+PLVSKEVPKALLPVANRPVLSYVLEQLELSN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGTSKKLLPLVSKEVPKALLPVANRPVLSYVLEQLELSNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVE-------------------------------------VAT 83
           AA+ VGGWIS AYVDRLHVE                                     VA 
Sbjct: 61  AAIHVGGWISNAYVDRLHVEQQNGNKHRVHICSVKSCNLGFEKLMPCKIPKCYITLQVAA 120

Query: 84  VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS 143
           V EDVGTAGALRAIAHHLTA D+LVVSGDLV DVPPGA+ AAHR+H+AVVT M+C  PVS
Sbjct: 121 VHEDVGTAGALRAIAHHLTANDILVVSGDLVFDVPPGALAAAHRKHNAVVTTMLCPAPVS 180

Query: 144 GLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDI 203
           G +E+GSSG KDK KKP RYNIIG+DP+KQFLLHIATGAE+EK+ RI+KSILRAVGQM+I
Sbjct: 181 GPTESGSSGGKDKIKKPRRYNIIGLDPSKQFLLHIATGAEVEKEIRIQKSILRAVGQMEI 240

Query: 204 RADLMDAHMYAFN-------------RSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEI 250
           RADLMDAHMYAF              RSVLQEVLD+KD+FQSLK+DVLPYLVRSQLKSE+
Sbjct: 241 RADLMDAHMYAFKRCSLSSPSLSISFRSVLQEVLDEKDEFQSLKEDVLPYLVRSQLKSEL 300

Query: 251 LINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNGSAPVRRTHKC 302
           L NG P   QA+E+GN+KV          +I+ANASTPSFHEL + G +GS  VRR HKC
Sbjct: 301 LFNGVP---QAEESGNEKVGSQNNQAVVSQIMANASTPSFHELSS-GNSGSTHVRRIHKC 356

Query: 303 CVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTV 360
           C YIAS S+YC RLNSIQAF DINRDVIG+A+HLSGY+FS+ NNIIHPSA+LGS+TTV
Sbjct: 357 CAYIASESRYCQRLNSIQAFSDINRDVIGDASHLSGYSFSSHNNIIHPSAQLGSRTTV 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518837|ref|XP_003629707.1| Translation initiation factor eIF-2B subunit gamma [Medicago truncatula] gi|355523729|gb|AET04183.1| Translation initiation factor eIF-2B subunit gamma [Medicago truncatula]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/368 (74%), Positives = 311/368 (84%), Gaps = 11/368 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGG SKKL+PLVS E+P ALLPVANRPVLSYV+E LELSN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGVSKKLLPLVSHELPNALLPVANRPVLSYVVELLELSNLKDLIVVVEGKD 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
            AL VG WIS AY DRLHVEVA VPEDVGTAGA+RAIA HL AKD+L+VSGDLVSDVP G
Sbjct: 61  TALNVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAIARHLYAKDILIVSGDLVSDVPIG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDAVVTA++C+ PVSG  E+ SSG KDK KKPGRY++IG+DPTKQFLLHIAT
Sbjct: 121 AVAATHRRHDAVVTALLCNTPVSGPLESVSSGGKDKAKKPGRYDLIGLDPTKQFLLHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD RI+KSILR+VGQ++IRADLMDAH+YAF RSVL EVLDQ  +F SLK DVLPY
Sbjct: 181 GAEVEKDLRIQKSILRSVGQVEIRADLMDAHLYAFKRSVLLEVLDQNGEFHSLKHDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQLKSE+L+NG P   QA+ENG +KV          +ILANAS P+FH  + L  NG
Sbjct: 241 LVRSQLKSEVLLNGTP---QAEENGTEKVISQSNQQMLSQILANASEPTFHLRHELSTNG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S  VRRTHKCCVYIA ++KYC RLNS+QA+ DINRDVIGEA+HLSGY+FS+ NNII P+A
Sbjct: 298 SDSVRRTHKCCVYIAGSNKYCARLNSLQAYNDINRDVIGEASHLSGYSFSSHNNIIDPTA 357

Query: 353 ELGSKTTV 360
           ELG+KTTV
Sbjct: 358 ELGAKTTV 365

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452670|ref|XP_004144082.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Cucumis sativus] gi|449493530|ref|XP_004159334.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Cucumis sativus]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 275/368 (74%), Positives = 317/368 (86%), Gaps = 11/368 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSK LVPLVSKE+PKALLPVANRPVLSYVLE LELSN+KD+IVV EG D
Sbjct: 1   MDFQVVVLAGGTSKNLVPLVSKELPKALLPVANRPVLSYVLELLELSNLKDIIVVAEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
            ALR+G WIS AY +RL VEV +VPEDVGTAGALRAI+ HLTA D+LVVSGDLVSDVPPG
Sbjct: 61  VALRIGSWISGAYDERLRVEVTSVPEDVGTAGALRAISRHLTANDILVVSGDLVSDVPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRR+ AVVTAM+CSVPVSG SE+GS+G KDKTKK   +NI+G+DPTKQFLL+IA+
Sbjct: 121 AVAATHRRNGAVVTAMLCSVPVSGSSESGSAGGKDKTKKAVIHNIVGLDPTKQFLLYIAS 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD +I+KSILRAVGQMDIRADLMDA+MYAF RS LQ+VLDQKD F+SL+QDVLPY
Sbjct: 181 GAEIEKDYKIQKSILRAVGQMDIRADLMDAYMYAFKRSALQKVLDQKDTFRSLRQDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQL+SE+L+NG P   + +ENG +KV          +IL+N+S  SFH+LYA G +G
Sbjct: 241 LVRSQLRSEVLLNGTP---RTEENGLEKVGSHKIQVLLSQILSNSSATSFHDLYASGADG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S PVR+THKCCVYI  +S YC RL SIQ++ DINRDVIGEA+HLSGY+FSAQNNIIHPSA
Sbjct: 298 SIPVRKTHKCCVYIPPSSNYCARLFSIQSYSDINRDVIGEASHLSGYSFSAQNNIIHPSA 357

Query: 353 ELGSKTTV 360
           +LGSKTTV
Sbjct: 358 QLGSKTTV 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79328173|ref|NP_001031908.1| translation initiation factor eIF-2B gamma subunit [Arabidopsis thaliana] gi|98961849|gb|ABF59254.1| unknown protein [Arabidopsis thaliana] gi|332005333|gb|AED92716.1| translation initiation factor eIF-2B gamma subunit [Arabidopsis thaliana]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 256/366 (69%), Positives = 303/366 (82%), Gaps = 10/366 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVV+LAGG S  LVPLV+KEVPKALLPVANRPVLSYVL+ LE SN+KDLIVVVEG D
Sbjct: 1   MDFQVVILAGGFSSYLVPLVAKEVPKALLPVANRPVLSYVLDLLESSNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL+VGGWIS+A VDRLHVEVA V E+VGTAGALRAIAHHLTAKD+L+VSGD+VSD+PPG
Sbjct: 61  AALKVGGWISSACVDRLHVEVAAVAENVGTAGALRAIAHHLTAKDILIVSGDIVSDIPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDA VT M+C+ PVSG SE+G SG KDKTKKP   +IIG+D  KQFLL+IA 
Sbjct: 121 AVAATHRRHDAAVTVMLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAK 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           G E++KDTR++KSIL A G+M+IR+DLMD+H+YAF R+VLQEVLDQK  F+SLKQDVLPY
Sbjct: 181 GTEIKKDTRVKKSILCAAGKMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQ------QAKENGNDKVSYRILANASTPSFHELYALGPNGSA 294
           LVR+QL+S++  + +   +      +     N+ V  +IL+NAS PSFH++Y  G     
Sbjct: 241 LVRTQLRSDVFSDQSNVEENGNGNGKNNMQNNEVVLSQILSNASMPSFHQVYESGLG--- 297

Query: 295 PVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAEL 354
             R+THKCCVYIA  SKY VRLNSIQAFMD+NRDVIGE+NHLSGY+FSA +NI+HPSAEL
Sbjct: 298 -TRKTHKCCVYIADESKYFVRLNSIQAFMDVNRDVIGESNHLSGYSFSAHHNIVHPSAEL 356

Query: 355 GSKTTV 360
           GSKTTV
Sbjct: 357 GSKTTV 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812131|ref|XP_002873949.1| acyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297319786|gb|EFH50208.1| acyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/366 (69%), Positives = 303/366 (82%), Gaps = 10/366 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVV+LAGG S  LVPLVSKEVPKALLPVANRPVLSYVL+ LE +N+KDLIVVVEG D
Sbjct: 1   MDFQVVILAGGFSSNLVPLVSKEVPKALLPVANRPVLSYVLDLLESNNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL+VGGWIS+A VDRLHVEVA V E+VGTAGALRAIAHHLTAKD+L+VSGD+VSD+PPG
Sbjct: 61  AALKVGGWISSACVDRLHVEVAAVAENVGTAGALRAIAHHLTAKDILIVSGDIVSDIPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDA VT M+C+ PVSG SE+G SG KDKTKKP   +IIG+D  KQFLL+IA 
Sbjct: 121 AVAATHRRHDAAVTVMLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAK 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE++KDTR++KSIL A G+++IR+DLMD+H+YAF RSVLQEVLDQK  F+SLK+DVLPY
Sbjct: 181 GAEIKKDTRVKKSILCAAGKIEIRSDLMDSHIYAFKRSVLQEVLDQKPAFRSLKEDVLPY 240

Query: 241 LVRSQLKSEILIN------GAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA 294
           LVR+QL+SEI  +            +     N+ V  +IL+NAS PSFH++Y  G +   
Sbjct: 241 LVRTQLRSEIFSDQNNVEENGNGNGKNNMQNNEVVLSQILSNASLPSFHQVYESGLDS-- 298

Query: 295 PVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAEL 354
             R+T+KCCVYIA  SK+ VRLNSIQAFMD+NRDVIG+ANHLSGY+FSA +NI+HPSAEL
Sbjct: 299 --RKTNKCCVYIADESKFFVRLNSIQAFMDVNRDVIGDANHLSGYSFSAHHNIVHPSAEL 356

Query: 355 GSKTTV 360
           GSKTTV
Sbjct: 357 GSKTTV 362

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:1009023495	456	AT5G19485 [Arabidopsis thalian	0.972	0.778	0.683	9.9e-126
DICTYBASE|DDB_G0290693	440	eif2b3 "eukaryotic translation	0.931	0.772	0.251	3.5e-27
UNIPROTKB|F1P4Z9	437	EIF2B3 "Uncharacterized protei	0.936	0.782	0.278	1e-25
UNIPROTKB|F1NBJ8	418	EIF2B3 "Uncharacterized protei	0.942	0.822	0.275	1.4e-25
ZFIN|ZDB-GENE-040426-1039	453	eif2b3 "eukaryotic translation	0.969	0.781	0.266	1.2e-24
UNIPROTKB|A5PJI7	452	EIF2B3 "Translation initiation	0.936	0.756	0.269	2.6e-24
UNIPROTKB|Q4R6T3	452	EIF2B3 "Translation initiation	0.928	0.75	0.278	4.4e-24
RGD|620821	452	Eif2b3 "eukaryotic translation	0.934	0.754	0.274	3.6e-23
UNIPROTKB|P70541	452	Eif2b3 "Translation initiation	0.934	0.754	0.274	3.6e-23
UNIPROTKB|Q9NR50	452	EIF2B3 "Translation initiation	0.928	0.75	0.273	1e-22

TAIR|locus:1009023495 AT5G19485 [Arabidopsis thaliana (taxid:3702)]

 Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
 Identities = 251/367 (68%), Positives = 292/367 (79%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             MDFQVV+LAGG S  LVPLV+KEVPKALLPVANRPVLSYVL+ LE SN+KDLIVVVEG D
Sbjct:     1 MDFQVVILAGGFSSYLVPLVAKEVPKALLPVANRPVLSYVLDLLESSNLKDLIVVVEGED 60

Query:    61 AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPG 120
             AAL+VGGWIS+A VDRLHVEVA V E+VGTAGALRAIAHHLTAK             PPG
Sbjct:    61 AALKVGGWISSACVDRLHVEVAAVAENVGTAGALRAIAHHLTAKDILIVSGDIVSDIPPG 120

Query:   121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
             AV A HRRHDA VT M+C+ PVSG SE+G SG KDKTKKP   +IIG+D  KQFLL+IA 
Sbjct:   121 AVAATHRRHDAAVTVMLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAK 180

Query:   181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
             G E++KDTR++KSIL A G+M+IR+DLMD+H+YAF R+VLQEVLDQK  F+SLKQDVLPY
Sbjct:   181 GTEIKKDTRVKKSILCAAGKMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPY 240

Query:   241 LVRSQLKSEILI-------NGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGS 293
             LVR+QL+S++         NG   G+   +N N+ V  +IL+NAS PSFH++Y  G    
Sbjct:   241 LVRTQLRSDVFSDQSNVEENGNGNGKNNMQN-NEVVLSQILSNASMPSFHQVYESGLG-- 297

Query:   294 APVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAE 353
                R+THKCCVYIA  SKY VRLNSIQAFMD+NRDVIGE+NHLSGY+FSA +NI+HPSAE
Sbjct:   298 --TRKTHKCCVYIADESKYFVRLNSIQAFMDVNRDVIGESNHLSGYSFSAHHNIVHPSAE 355

Query:   354 LGSKTTV 360
             LGSKTTV
Sbjct:   356 LGSKTTV 362

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0290693 eif2b3 "eukaryotic translation initiation factor 2B, subunit 3 gamma" [Dictyostelium discoideum (taxid:44689)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 92/366 (25%), Positives = 177/366 (48%)

Query:     3 FQVVVLA----GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIK---DLIVV 55
             FQVV+LA     G SK L P +   +P +LLP+ANRP++SY LE LE +  +   + +++
Sbjct:     6 FQVVILATDKASGNSK-LEP-IDATIPHSLLPIANRPLISYQLEFLEKAGFETKSEPVII 63

Query:    56 VEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXX 115
             V    +  ++  ++S  Y  ++ VE   + + + T   L  I   +  +           
Sbjct:    64 VVNETSQEKIKQYVSEIYKGKIEVEFFVLKDQLATCEILYRIRDKIRLEYFMVLNANLVL 123

Query:   116 XXP-PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY-NIIGMDPTKQ 173
                    +   HR+ ++ +T ++   P   + + G    +  TK+   + + I ++   Q
Sbjct:   124 EDTFIRQMADLHRKEESSLTVLL-KPPTPKVEQKGKGATETSTKQDKLFTDYIALEEKSQ 182

Query:   174 FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL-DQKDK--- 229
              ++ +    E+E+D    KS+L+    + I  +L D  +Y F+R VL  ++ DQK+K   
Sbjct:   183 KIVMMEPATEVEEDLNFNKSLLKYFPNVTIYTNLQDTQLYIFSRWVLDLIIEDQKEKYPL 242

Query:   230 FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALG 289
             F  +K+ ++PYL+  Q+ +       P    +  N N  +S + +++ ++P F +   L 
Sbjct:   243 FFDIKKHLIPYLLSCQIPNIKRKRALPA---SAFNQNQTLS-QTMSSTTSP-FDQFSEL- 296

Query:   290 PNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSGYNFSAQNNII 348
                +A   +T KC  ++     YC+ +N+I+ +  INRD+  G+  +L     S +N  I
Sbjct:   297 ---NAQKNKTIKCFAHLLKKEGYCMNVNTIKNYQQINRDIAKGDLQYLPNEPKSEKNFFI 353

Query:   349 HPSAEL 354
              P+A +
Sbjct:   354 DPTANV 359

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006413 "translational initiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|F1P4Z9 EIF2B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 292 (107.8 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 104/374 (27%), Positives = 171/374 (45%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV NRP+L Y L  LE +  +++IV+     
Sbjct:     1 MEFQAVVMAAGGGSRMTDLTSS-IPKPLLPVGNRPLLWYPLNLLERAGFEEVIVITRK-- 57

Query:    61 AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPG 120
                 +   +S     +L     +   D+GTA +LR I H                     
Sbjct:    58 ---EIQKMLSLDTKMKLDFVYISDNVDMGTADSLRHI-HQKIKTDVLVLSCDLITDVDLY 113

Query:   121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
              V    R HDA ++ ++   P    +E  + G K K K   + + IG+D T + LL +A 
Sbjct:   114 KVVDLFRTHDATLSMLMKKAPEP--TEV-APGQKGKKKPVEQRDFIGVDDTGKRLLFMAN 170

Query:   181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
              A+L+++  I++SIL+   +M IR  LMDAH+Y   + V+  +++ +    SL+ +++P+
Sbjct:   171 EADLDEELVIKRSILQKHPRMHIRTGLMDAHLYCLKKYVVDFLVENRT-ITSLRSELIPH 229

Query:   241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANAS-TPSFHELYALGPNGSA----- 294
             LVR Q  S   +     G   KE G  K     L   S     + L    P+ S      
Sbjct:   230 LVRKQFSSPTSLQ---HGLDNKEEGRKKKEQASLDIYSFIKEDNSLLKPAPDNSCWNDHR 286

Query:   295 -PVRRT-H----KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNII 348
               +  T H    +C V+I      C R+N++  +++ NR V      L   N   +  ++
Sbjct:   287 GDMNETLHEGKVRCYVHIMKEG-LCCRVNTLALYIEANRQV---PKLL--LNLGLEEPLV 340

Query:   349 HPSAELGSKTTVSS 362
             H +A++  +  V S
Sbjct:   341 HGTAQITDRGMVGS 354

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

GO:0051716 "cellular response to stimulus" evidence=IEA

UNIPROTKB|F1NBJ8 EIF2B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 103/374 (27%), Positives = 167/374 (44%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV NRP+L Y L  LE +  +++IV+     
Sbjct:     3 MEFQAVVMAAGGGSRMTDLTSS-IPKPLLPVGNRPLLWYPLNLLERAGFEEVIVITRK-- 59

Query:    61 AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPG 120
                 +   +S     +L     +   D+GTA +LR I H                     
Sbjct:    60 ---EIQKMLSLDTKMKLDFVYISDNVDMGTADSLRHI-HQKIKTDVLVLSCDLITDVDLY 115

Query:   121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
              V    R HDA ++ ++   P       G  G K       R + IG+D T + LL +A 
Sbjct:   116 KVVDLFRTHDATLSMLMKKAPEPTEVAPGQKGKKKPASVEQR-DFIGVDDTGKRLLFMAN 174

Query:   181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
              A+L+++  I++SIL+   +M IR  LMDAH+Y   + V+  +++ +    SL+ +++P+
Sbjct:   175 EADLDEELVIKRSILQKHPRMHIRTGLMDAHLYCLKKYVVDFLVENRT-ITSLRSELIPH 233

Query:   241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANAS-TPSFHELYALGPNGSA----- 294
             LVR Q  S   +     G   KE G  K     L   S     + L    P+ S      
Sbjct:   234 LVRKQFSSPTSLQ---HGLDNKEEGRKKKEQASLDIYSFIKEDNSLLKPAPDNSCWNDHR 290

Query:   295 -PVRRT-H----KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNII 348
               +  T H    +C V+I      C R+N++  +++ NR V      L   N   +  ++
Sbjct:   291 GDMNETLHEGKVRCYVHIMKEG-LCCRVNTLALYIEANRQV---PKLL--LNLGLEEPLV 344

Query:   349 HPSAELGSKTTVSS 362
             H +A++  +  V S
Sbjct:   345 HGTAQITDRGMVGS 358

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1039 eif2b3 "eukaryotic translation initiation factor 2B, subunit 3 gamma" [Danio rerio (taxid:7955)]

 Score = 284 (105.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 102/383 (26%), Positives = 176/383 (45%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGA 59
             M+ Q V++A G   +++ L +   PK LLPV N+P++ Y L  LE    +++IV+  +  
Sbjct:     1 MELQAVLMAAGGGSRMMDL-TYNTPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTKEV 59

Query:    60 DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPP 119
               AL     +      +L V       D+GTA ALR I   +                  
Sbjct:    60 QKALSTDQRLKTDVKMKLDVVCIQEEADMGTADALRHIQQKIKTDILVLSCDLITDVALH 119

Query:   120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
               V    R H+A ++ M+ S  V   +E    G K K K   + + +G+D T + LL +A
Sbjct:   120 EVVDL-FRAHNATLS-MLMS-KVHEFTET-VPGQKGKKKAGEQRDFVGVDVTGKRLLFMA 175

Query:   180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
               A+LE+   +RKSI+R   +M I+  L+DAH+Y   RSV+  ++  K    S++ +++P
Sbjct:   176 NEADLEEGLVLRKSIMRKHPRMFIKTGLLDAHLYCLKRSVVDFLVHNKS-VTSIRGELVP 234

Query:   240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA----- 294
             YLVR Q    +  N     + +++N   + ++  +   ST     L  L    S      
Sbjct:   235 YLVRKQFSKSL--NSQHVTEDSEKNQKQQEAHINMDLLSTSKDEALLQLARERSCWNDHR 292

Query:   295 -PVRRTH-----KCCVYIASNSKYCVRLNSIQAFMDINRDV--------IGEANHLSGYN 340
               +   +     +C V+I  +   C R+N++ A+++ NR V        I     +S  +
Sbjct:   293 GDMSEAYHGGKIRCYVHIMEDGM-CYRVNTLAAYIEANRVVPKLFEEPPIHPTAVVSERS 351

Query:   341 FSAQNNIIHPSAELGSKTTVSSS 363
                 ++II PS ++  KT++  S
Sbjct:   352 LVGSDSIIGPSCQISDKTSIKRS 374

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

UNIPROTKB|A5PJI7 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Bos taurus (taxid:9913)]

 Score = 281 (104.0 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 101/375 (26%), Positives = 174/375 (46%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IV+    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITT-KD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 +    +     ++ +++  +P+  D+GTA +LR I   L                 
Sbjct:    59 VQKALCADFNKM---KMKLDIVCIPDEADMGTADSLRHIYQKLKTDVLVLSCDLITDVAL 115

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R HDA + AM+       L      G K K K   + + +G+D T + LL +
Sbjct:   116 HEVVDL-FRAHDASL-AMLMRKGQESLEPV--PGQKGKKKAVEQRDFVGVDSTGKRLLFM 171

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++     L+DAH+Y   + V+  +++ K    S++ +++
Sbjct:   172 ANEADLDEELIIKGSILQKHPRIRFHTGLVDAHLYCLKKYVVDFLMENKS-ITSIRSELI 230

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRIL--------ANASTPSFHELY---A 287
             PYLVR Q  S      + QGQ+ KE    K   + L        AN  T + ++      
Sbjct:   231 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLTLAPYDTCWNAC 286

Query:   288 LGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
              G +     R   +C V+I      C R++++  +M+ NR V    + L       + ++
Sbjct:   287 RGDSWEGLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV----SKLLPV-ICPEESL 340

Query:   348 IHPSAELGSKTTVSS 362
             IH SA++ SK  V +
Sbjct:   341 IHSSAQIVSKHMVGA 355

GO:0006413 "translational initiation" evidence=ISS

GO:0014003 "oligodendrocyte development" evidence=ISS

GO:0051716 "cellular response to stimulus" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q4R6T3 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Macaca fascicularis (taxid:9541)]

 Score = 279 (103.3 bits), Expect = 4.4e-24, P = 4.4e-24
 Identities = 104/373 (27%), Positives = 170/373 (45%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLP  N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPAGNKPLIWYPLNLLERVGFEEVIVVTT-RD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  ++  ++  +P+D  +GTA +LR +   L                 
Sbjct:    59 ----VQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKTDVLVLSCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA + AM+       L      G K K K   + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASL-AMLMRKGQDSLEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++    DL+DAH+Y   + V+ + L +     S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKYPRIRFHTDLVDAHLYCLKKYVV-DFLMENGSITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
             PYLVR Q  S      + QGQ+ KE    K        Y  L  A+T +     A     
Sbjct:   230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFLKEANTLNLAPYDACWNAC 285

Query:   289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
              G       R   +C V+I      C R++++  +M+ NR V      LS      +  +
Sbjct:   286 RGDRWEDLPRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSA--LCPEEPL 339

Query:   348 IHPSAELGSKTTV 360
             +H SA++ SK  V
Sbjct:   340 VHSSAQIVSKHLV 352

GO:0005737 "cytoplasm" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0014003 "oligodendrocyte development" evidence=ISS

GO:0051716 "cellular response to stimulus" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

RGD|620821 Eif2b3 "eukaryotic translation initiation factor 2B, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 271 (100.5 bits), Expect = 3.6e-23, P = 3.6e-23
 Identities = 103/375 (27%), Positives = 174/375 (46%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT-KD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  +L  ++  +P+  D+GTA +LR I   L                 
Sbjct:    59 ----VQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKTDVLVLGCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA +  ++     S     G  G K KT +  + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASLAMLMRKGQESTEPVPGQKGKK-KTVE--QRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++  +  L+DAH+Y   + V+  +++ K    S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENKS-ITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA--PV 296
             PYLVR Q  S      + Q Q+ KE    K   + L   S         L P  +     
Sbjct:   230 PYLVRKQFSSA----SSQQRQEDKEEDLKKKEPKSLDIYSFIKKDNTLTLAPYDACWNAF 285

Query:   297 RRTH---------KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
             RR           +C V+I      C R++++  +M+ NR V      LS      + ++
Sbjct:   286 RRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSV--LCPEESM 339

Query:   348 IHPSAELGSKTTVSS 362
             IHPSA++ +K  + +
Sbjct:   340 IHPSAQIANKHLIGA 354

GO:0003743 "translation initiation factor activity" evidence=ISO;ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO;IGI;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISO;ISS;IDA;IPI

GO:0006412 "translation" evidence=TAS

GO:0006413 "translational initiation" evidence=ISO;ISS

GO:0006417 "regulation of translation" evidence=IMP

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISO;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009408 "response to heat" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=IDA

GO:0014003 "oligodendrocyte development" evidence=ISO;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0032057 "negative regulation of translational initiation in response to stress" evidence=IMP

GO:0043434 "response to peptide hormone stimulus" evidence=IDA

GO:0051716 "cellular response to stimulus" evidence=ISO;ISS

UNIPROTKB|P70541 Eif2b3 "Translation initiation factor eIF-2B subunit gamma" [Rattus norvegicus (taxid:10116)]

 Score = 271 (100.5 bits), Expect = 3.6e-23, P = 3.6e-23
 Identities = 103/375 (27%), Positives = 174/375 (46%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT-KD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  +L  ++  +P+  D+GTA +LR I   L                 
Sbjct:    59 ----VQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKTDVLVLGCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA +  ++     S     G  G K KT +  + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASLAMLMRKGQESTEPVPGQKGKK-KTVE--QRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++  +  L+DAH+Y   + V+  +++ K    S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENKS-ITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA--PV 296
             PYLVR Q  S      + Q Q+ KE    K   + L   S         L P  +     
Sbjct:   230 PYLVRKQFSSA----SSQQRQEDKEEDLKKKEPKSLDIYSFIKKDNTLTLAPYDACWNAF 285

Query:   297 RRTH---------KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
             RR           +C V+I      C R++++  +M+ NR V      LS      + ++
Sbjct:   286 RRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSV--LCPEESM 339

Query:   348 IHPSAELGSKTTVSS 362
             IHPSA++ +K  + +
Sbjct:   340 IHPSAQIANKHLIGA 354

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q9NR50 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Homo sapiens (taxid:9606)]

 Score = 267 (99.0 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 102/373 (27%), Positives = 169/373 (45%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT-RD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  ++  ++  +P+D  +GTA +LR I   L                 
Sbjct:    59 ----VQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA + AM+       +      G K K K   + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASL-AMLMRKGQDSIEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++     L+DAH+Y   + ++ + L +     S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKHPRIRFHTGLVDAHLYCLKKYIV-DFLMENGSITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
             PYLVR Q  S      + QGQ+ KE    K        Y  +  A+T +     A     
Sbjct:   230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNAC 285

Query:   289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
              G       R   +C V+I      C R++++  +M+ NR V      LS      +   
Sbjct:   286 RGDRWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSA--LCPEEPP 339

Query:   348 IHPSAELGSKTTV 360
             +H SA++ SK  V
Sbjct:   340 VHSSAQIVSKHLV 352

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0006413 "translational initiation" evidence=IDA;TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=IDA

GO:0009408 "response to heat" evidence=ISS;TAS

GO:0014003 "oligodendrocyte development" evidence=IMP

GO:0032057 "negative regulation of translational initiation in response to stress" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=IDA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0051716 "cellular response to stimulus" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=ISS

GO:0043434 "response to peptide hormone stimulus" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
cd04198	214	cd04198, eIF-2B_gamma_N, The N-terminal domain of	9e-65
cd02507	216	cd02507, eIF-2B_gamma_N_like, The N-terminal of eI	6e-50
cd04181	217	cd04181, NTP_transferase, NTP_transferases catalyz	4e-25
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	2e-24
cd06915	223	cd06915, NTP_transferase_WcbM_like, WcbM_like is a	1e-18
cd04197	217	cd04197, eIF-2B_epsilon_N, The N-terminal domain o	6e-16
pfam00483	247	pfam00483, NTP_transferase, Nucleotidyl transferas	8e-14
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	4e-13
COG1209	286	COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel	3e-11
cd06422	221	cd06422, NTP_transferase_like_1, NTP_transferase_l	4e-11
cd06425	233	cd06425, M1P_guanylylT_B_like_N, N-terminal domain	7e-11
cd06426	220	cd06426, NTP_transferase_like_2, NTP_trnasferase_l	3e-10
cd04189	236	cd04189, G1P_TT_long, G1P_TT_long represents the l	5e-09
cd06428	257	cd06428, M1P_guanylylT_A_like_N, N-terminal domain	9e-09
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	2e-08
cd02523	229	cd02523, PC_cytidylyltransferase, Phosphocholine c	2e-07
pfam12804	178	pfam12804, NTP_transf_3, MobA-like NTP transferase	3e-07
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	3e-07
PRK14353	446	PRK14353, glmU, bifunctional N-acetylglucosamine-1	5e-07
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	7e-07
COG1213	239	COG1213, COG1213, Predicted sugar nucleotidyltrans	2e-06
COG4750	231	COG4750, LicC, CTP:phosphocholine cytidylyltransfe	2e-06
cd02538	240	cd02538, G1P_TT_short, G1P_TT_short is the short f	6e-06
COG0746	192	COG0746, MobA, Molybdopterin-guanine dinucleotide	7e-06
cd02503	181	cd02503, MobA, MobA catalyzes the formation of mol	1e-05
cd02516	218	cd02516, CDP-ME_synthetase, CDP-ME synthetase is i	2e-05
TIGR01208	353	TIGR01208, rmlA_long, glucose-1-phosphate thymidyl	2e-05
PRK15480	292	PRK15480, PRK15480, glucose-1-phosphate thymidylyl	3e-05
TIGR01207	286	TIGR01207, rmlA, glucose-1-phosphate thymidylyltra	6e-05
TIGR02623	254	TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti	6e-05
cd04182	186	cd04182, GT_2_like_f, GT_2_like_f is a subfamily o	1e-04
cd02541	267	cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca	1e-04
COG1210	291	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell	1e-04
TIGR00453	217	TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha	3e-04
PRK00155	227	PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat	5e-04
PRK14358	481	PRK14358, glmU, bifunctional N-acetylglucosamine-1	5e-04
PRK09382	378	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythri	6e-04
COG1211	230	COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erith	7e-04
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	0.001
TIGR01105	297	TIGR01105, galF, UTP-glucose-1-phosphate uridylylt	0.001
COG2068	199	COG2068, COG2068, Uncharacterized MobA-related pro	0.002
cd02524	253	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr	0.004

>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score =  204 bits (521), Expect = 9e-65
 Identities = 86/220 (39%), Positives = 126/220 (57%), Gaps = 8/220 (3%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
           FQ V+LAGG   +L PL    +PKALLPVAN+P++ Y L+ LE +  +D+IVVV   + A
Sbjct: 1   FQAVILAGGGGSRLYPLTDN-IPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQA 59

Query: 63  LRVGGWISA--AYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
                  S       +L      + ED+GTA +LR I   +  KD LV+S DL++D+P  
Sbjct: 60  EISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIK-KDFLVLSCDLITDLPLI 118

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
            +   HR HDA +T ++   PVS   +    G K K+KK    ++IG+D   Q LL I +
Sbjct: 119 ELVDLHRSHDASLTVLLYPPPVSSEQK----GGKGKSKKADERDVIGLDEKTQRLLFITS 174

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220
             +L++D  +RKS+L+   ++ I   L+DAH+Y F R VL
Sbjct: 175 EEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214

>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

 Score =  166 bits (422), Expect = 6e-50
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 22/228 (9%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
           FQ VVLA G   + +PL + ++PKALLPVAN P++ Y LE LE + ++++ VV      A
Sbjct: 1   FQAVVLADGFGSRFLPL-TSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQA 59

Query: 63  LRVGGWISAAYVDRLHVEVATVP----EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
           +      S        + V  +     E  G A  LR I   +   D L++S DLVS++P
Sbjct: 60  IIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIR-SDFLLLSCDLVSNIP 118

Query: 119 PGAVTAA----HRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF 174
              +        +   A +T ++ S PVS           +++KK    ++I +D   Q 
Sbjct: 119 LSELLEERRKKDKNAIATLTVLLASPPVS----------TEQSKKTEEEDVIAVDSKTQR 168

Query: 175 LLHIATGAELEKDTR--IRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220
           LL +    +L++D    IRKS+L     + IR DL+D H+Y  +  VL
Sbjct: 169 LLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216

>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

 Score =  100 bits (252), Expect = 4e-25
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 49/245 (20%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGADAAL 63
            V+LA G   +L PL +   PK LLP+A +P+L Y++E+L  + I ++I+VV    +   
Sbjct: 1   AVILAAGKGTRLRPL-TDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQ-- 57

Query: 64  RVGGWISAAYVD--RLHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGDLVSDVPP 119
                I   + D  +  V +  V ++   GTAGA+R     L   D LVV+GD+++D+  
Sbjct: 58  -----IEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDL 112

Query: 120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
             +   HR   A  T  +  V                   P RY ++ +D   + +    
Sbjct: 113 SELLRFHREKGADATIAVKEVED-----------------PSRYGVVELDDDGR-VTRF- 153

Query: 180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
               +EK T + +S            +L +A +Y F   +L  + +   + +    D +P
Sbjct: 154 ----VEKPT-LPES------------NLANAGIYIFEPEILDYIPEILPRGEDELTDAIP 196

Query: 240 YLVRS 244
            L+  
Sbjct: 197 LLIEE 201

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score =  102 bits (255), Expect = 2e-24
 Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 46/244 (18%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + V+LAGG   +L PL + + PK LLP+A +P++ YVLE L  + ++++++VV       
Sbjct: 3   KAVILAGGYGTRLRPL-TDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVG------ 55

Query: 64  RVGGWISAAYVDR--LHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGDLVSDVPP 119
            +G  I   + D   L V +  V E    GTAGAL+     L   D LV++GD+++D+  
Sbjct: 56  YLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDL 115

Query: 120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
             +   H++  A+ T  I    V   SE G                              
Sbjct: 116 SELLEFHKKKGALAT--IALTRVLDPSEFG------------------------------ 143

Query: 180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
                + D R+ +   +   + +  ++L++A +Y F+  V  + +++ ++F   ++++LP
Sbjct: 144 VVETDDGDGRVVEFREKPGPE-EPPSNLINAGIYIFDPEVF-DYIEKGERF-DFEEELLP 200

Query: 240 YLVR 243
            L  
Sbjct: 201 ALAA 204

Length = 358

>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases

 Score = 83.4 bits (207), Expect = 1e-18
 Identities = 69/249 (27%), Positives = 97/249 (38%), Gaps = 58/249 (23%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLI--------VVV 56
            V+LAGG   +L  +V K++PK L PVA RP L Y+LE L    I  ++         + 
Sbjct: 1   AVILAGGLGTRLRSVV-KDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIE 59

Query: 57  EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD 116
           E      R G  I   YV          PE +GT GA++     L     LV++GD   D
Sbjct: 60  EYFGDGYRGG--IRIYYVIE--------PEPLGTGGAIKNALPKLPEDQFLVLNGDTYFD 109

Query: 117 VPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLL 176
           V   A+ AA R   A  T M     V   S               RY             
Sbjct: 110 VDLLALLAALRASGADAT-MAL-RRVPDAS---------------RYG------------ 140

Query: 177 HIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236
                  ++ D R+   + +  G       L++  +Y   + +L E+    D F SL+ D
Sbjct: 141 ----NVTVDGDGRVIAFVEKGPGA---APGLINGGVYLLRKEILAEI--PADAF-SLEAD 190

Query: 237 VLPYLVRSQ 245
           VLP LV+  
Sbjct: 191 VLPALVKRG 199

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223

>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 27/231 (11%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
            Q VVLA   +++  PL +KE P+ LLP+AN P++ Y LE L L+ ++++ V    + + 
Sbjct: 1   LQAVVLADSFNRRFRPL-TKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFC-CSHSD 58

Query: 63  -----LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAI-AHHLTAKDVLVVSGDLVSD 116
                +    W        + V +    +      ALR + A  L   D ++VSGD+VS+
Sbjct: 59  QIKEYIEKSKWSKPKS-SLMIVIIIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSN 117

Query: 117 VPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT 171
           +    +   H+       +A++T ++         EA       +T +     +I +DP 
Sbjct: 118 IDLKEILEEHKERRKKDKNAIMTMVL--------KEASPPHRTRRTGEEF---VIAVDPK 166

Query: 172 KQFLLHIATGAELEKDTRIR--KSILRAVGQMDIRADLMDAHMYAFNRSVL 220
              LLH       +  +       +L +  +++IR DL+D H+   +  VL
Sbjct: 167 TSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217

>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase

 Score = 69.9 bits (172), Expect = 8e-14
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 11/157 (7%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           ++LAGG+  +L PL ++ + K L+PV ++ P++ Y L +L  + I++ IV+    +    
Sbjct: 3   IILAGGSGTRLWPL-TRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVIC-TQEHRFL 60

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD---VLVVSGDLVSDVPPGA 121
           V   +       L V  A  PE  GTA A+   A  L   D   VLV+ GD +  +    
Sbjct: 61  VAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFEE 120

Query: 122 VTAAHRRHDAVVTAMICSVPVS-----GLSEAGSSGA 153
                R   A  T     VPV      G+ E   +G 
Sbjct: 121 AVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGR 157

This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 69.5 bits (171), Expect = 4e-13
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 4/115 (3%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + V+LA G   ++ PL     PK +LPVA +P+L +++E L  + I D + VV      +
Sbjct: 2   KAVILAAGKGTRMRPLTET-RPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
           R   +        + +E     E +GTA AL +   ++  +  LV++GD++ D  
Sbjct: 61  R--EYFGDGSRGGVPIEYVVQEEQLGTADALGSAKEYVDDE-FLVLNGDVLLDSD 112

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV--EGADAAL 63
           V+LAGG+  +L PL ++ VPK LLPV ++P++ Y LE L L+ I+D+++VV  E      
Sbjct: 4   VILAGGSGTRLRPL-TRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFK 62

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD 112
            + G  S   VD   +  A  PE  G A A+      +   D ++  GD
Sbjct: 63  ELLGDGSDFGVD---ITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYLGD 108

Length = 286

>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 20/140 (14%)

Query: 7   VLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVG 66
           +LA G   ++ PL +   PK L+PVA +P++ + L++L  + I+ ++V            
Sbjct: 4   ILAAGLGTRMRPL-TDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNT---------- 52

Query: 67  GWISAAYVDRLH-----VEVATVPEDV---GTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
             ++      L      + +    E      T G ++     L  +  LVV+GD++ D  
Sbjct: 53  HHLADQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGD 112

Query: 119 PGAVTAAHR-RHDAVVTAMI 137
              +   H  R DA++  + 
Sbjct: 113 LAPLLLLHAWRMDALLLLLP 132

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221

>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 48/246 (19%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGADAAL 63
            ++L GG   +L PL    VPK L+   N+P++ + +E L  + +K++I+ V    +  +
Sbjct: 3   ALILVGGYGTRLRPLTLT-VPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMV 61

Query: 64  RVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLT--AKDVLVVSGDLVSDVPP 119
                    Y  +L +++    E   +GTAG L      L    +   V++ D++ D P 
Sbjct: 62  P----FLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPL 117

Query: 120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
             +   H++H A  T ++                  K + P +Y ++  D          
Sbjct: 118 AELLDFHKKHGAEGTILV-----------------TKVEDPSKYGVVVHD---------- 150

Query: 180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
                E   RI + + +         + ++A +Y  N SVL  +     +  S+++++ P
Sbjct: 151 -----ENTGRIERFVEKPK---VFVGNKINAGIYILNPSVLDRI---PLRPTSIEKEIFP 199

Query: 240 YLVRSQ 245
            +    
Sbjct: 200 KMASEG 205

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233

>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 16/136 (11%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV----EGAD 60
           VV++AGG   +L PL ++  PK +L V  +P+L  ++++      ++  + V    E  +
Sbjct: 1   VVIMAGGKGTRLRPL-TENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIE 59

Query: 61  AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
                G         +  V ++ V ED  +GTAGAL  +    T    LV++GD+++++ 
Sbjct: 60  DYFGDG--------SKFGVNISYVREDKPLGTAGALSLLPEKPTD-PFLVMNGDILTNLN 110

Query: 119 PGAVTAAHRRHDAVVT 134
              +   H+ ++A  T
Sbjct: 111 YEHLLDFHKENNADAT 126

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220

>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LAGG   +L PL +   PK L+PVA +P++ Y +E L  + I+D+ +VV
Sbjct: 4  LILAGGKGTRLRPL-TYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVV 53

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236

>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 5   VVVLAGGTSK--KLVPLVSKEVPKALLPVANRPVLSYVLEQL-ELSNIKDLIVVVEGADA 61
            V+L GG  K  +  PL S +VPK L PVA +P++ + +E   ++ ++K+++++    ++
Sbjct: 1   AVILVGGPQKGTRFRPL-SLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPES 59

Query: 62  ALRVGGWISAAYVD-RLHVEVATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDV 117
                 +IS A  +  + +      + +GTAG L      + A       V++ D+  D 
Sbjct: 60  VFS--DFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDF 117

Query: 118 PPGAVTAAHRRHDAVVTAM 136
           P   +   H++H A  T +
Sbjct: 118 PLQELLEFHKKHGASGTIL 136

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 17/140 (12%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGA 59
           M    V+LA G   ++      ++PK L PVA +P+L +V++        D++VVV  GA
Sbjct: 1   MSLSAVILAAGKGTRM----KSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGA 56

Query: 60  DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA---KDVLVVSGD--LV 114
           +        +  A  +R  VE     E +GT  A+      L      DVLV+ GD  L+
Sbjct: 57  EQ-------VREALAERDDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLI 109

Query: 115 SDVPPGAVTAAHRRHDAVVT 134
           +      + AAH  H A  T
Sbjct: 110 TAETLEELLAAHPAHGAAAT 129

Length = 460

>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 18/116 (15%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++LA G   +L PL +++ PK LL +  +P+L   +E L+ + I D+++V         
Sbjct: 1   AIILAAGRGSRLRPL-TEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVT-------- 51

Query: 65  VGGWISAAYVDRL--HVEVATV----PEDVGTAGALRAIAHHLTAKDVLVVSGDLV 114
             G+      + L  +  +  V      +     +L  +A     +D L++ GD+V
Sbjct: 52  --GYKKEQIEELLKKYPNIKFVYNPDYAETNNIYSL-YLARDFLDEDFLLLEGDVV 104

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229

>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            V+LAGG S ++         KALLP+  +P+L  VL++  L    D +VVV        
Sbjct: 1   GVILAGGRSSRM------GGDKALLPLGGKPLLERVLDR--LRPAGDEVVVVTNRPEI-- 50

Query: 65  VGGWISAAYVDRLHVEVATVP-EDVGTAGALRAIAHHLTAKD-VLVVSGDLVSDVPPGAV 122
                 AA +  L V V   P    G    L A        D VLV++ D+   + P  +
Sbjct: 51  ------AAALAGLGVPVVPDPDPGQGPLAGLAAGLRAAPDADAVLVLACDMP-FLTPDLL 103

Query: 123 T---AAHRRHDAVVTA 135
               AA     A +  
Sbjct: 104 RRLLAALEASGADIAV 119

This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 5   VVVLAGG--T---SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EG 58
            V+LA G  T   S           PK L P+A +P+L +VL+         ++VVV  G
Sbjct: 1   AVILAAGKGTRMKSDL---------PKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHG 51

Query: 59  ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT--AKDVLVVSGD--LV 114
           A+             +   +VE     E +GT  A++     L     DVLV+ GD  L+
Sbjct: 52  AEQV--------KKALANPNVEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLI 103

Query: 115 SDVPPGAVTAAHRRHDAVVT 134
           +      +  AHR   A VT
Sbjct: 104 TPETLQRLLEAHREAGADVT 123

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++LA G   ++       +PK L PVA RP+L++VL          + VVV G  A    
Sbjct: 9   IILAAGEGTRM----KSSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVV-GPGAEA-- 61

Query: 66  GGWISAAYVDRLHVEVATV--PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPP 119
                AA   ++  +       E +GTA A+ A    L     DVLV+ GD  L++    
Sbjct: 62  ----VAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETL 117

Query: 120 GAVTAAHRRHDAVV 133
             +         VV
Sbjct: 118 ARLRERLADGADVV 131

Length = 446

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 16/115 (13%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGA 59
           M+   ++LA G   ++    SK +PK L  V  +P++ +V++ ++ + I  ++ VV  GA
Sbjct: 1   MNRYAIILAAGKGTRMK---SK-LPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGA 56

Query: 60  DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD--VLVVSGD 112
           +    V G       DR   E A   E +GT  A+      L  K+   LV+ GD
Sbjct: 57  EEVKEVLG-------DR--SEFALQEEQLGTGHAVMQAEEFLADKEGTTLVICGD 102

Length = 458

>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEG 58
           V+LA G   +L P    ++PKAL+ V  R ++   +E L  + I + +VV  G
Sbjct: 6  AVILAAGFGSRLGP----DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNG 55

Length = 239

>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LA G   + VPL ++  PK+LL V   P++   +EQL  + I D+ +VV
Sbjct: 4  IILAAGLGSRFVPL-TQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVV 53

Length = 231

>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 20/116 (17%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++LAGG+  +L PL +K V K LLPV ++P++ Y L  L L+ I++++++    D  L  
Sbjct: 4   IILAGGSGTRLYPL-TKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPL-- 60

Query: 66  GGWISAAYVDRL--------HVEVATVPEDVGTAGALRAIAHHLTAKD-VLVVSGD 112
                  + + L         +  A  P+  G A A   I       D V ++ GD
Sbjct: 61  -------FKELLGDGSDLGIRITYAVQPKPGGLAQAF-IIGEEFIGDDPVCLILGD 108

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240

>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
                V+LAGG S+++         KALLP+  RP++ +V+++L       +I       
Sbjct: 3   TPMTGVILAGGKSRRMRD-------KALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQG 55

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
                G          L V V       G    + A   H   + VLV+  D+   +PP 
Sbjct: 56  RYAEFG----------LPV-VPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPF-IPPE 103

Query: 121 AV----TAAHRRHDAVVTA 135
            V    +A  +   A+V A
Sbjct: 104 LVERLLSAFKQTGAAIVPA 122

Length = 192

>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 24/133 (18%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           V+LAGG S+++         KALL +  +P+L +VLE+L+   + D +V+    D     
Sbjct: 4   VILAGGKSRRM------GGDKALLELGGKPLLEHVLERLK--PLVDEVVISANRD----- 50

Query: 66  GGWISAAYVDRLHVEVAT-VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAV-- 122
                      L V V    P   G    + A      A  VLV++ D+   +PP  +  
Sbjct: 51  -----QERYALLGVPVIPDEPPGKGPLAGILAALRAAPADWVLVLACDMP-FLPPELLER 104

Query: 123 --TAAHRRHDAVV 133
              AA    DAVV
Sbjct: 105 LLAAAEEGADAVV 117

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181

>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 39/155 (25%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLE-LSNIKDLIVVVEGADAAL 63
            ++LA G+  ++      ++PK  L +  +PVL + LE       I +++VVV   D   
Sbjct: 3   AIILAAGSGSRM----GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDID- 57

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALR------AIAHHLTAKD--VLV------- 108
                        L   V  V       GA R       +     A    VL+       
Sbjct: 58  ----LAKELAKYGLSKVVKIVE-----GGATRQDSVLNGLKALPDADPDIVLIHDAARPF 108

Query: 109 VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS 143
           VS +L+  +    + A  + + A + A    VPV+
Sbjct: 109 VSPELIDRL----IDAL-KEYGAAIPA----VPVT 134

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218

>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LA G   +L PL     PK L+PVAN+P+L Y +E L  + I D+ +VV
Sbjct: 3  LILAAGKGTRLRPLTFTR-PKQLIPVANKPILQYAIEDLAEAGITDIGIVV 52

The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353

>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++    D   R 
Sbjct: 7   IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTP-RF 64

Query: 66  GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV---SDVPPGAV 122
              +       L+++    P   G A A       +   D  +V GD +    D+P    
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLME 124

Query: 123 TAAHRRHDAVVTA 135
            A ++   A V A
Sbjct: 125 AAVNKESGATVFA 137

Length = 292

>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 15/174 (8%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL-- 63
           ++LAGG+  +L P +++ V K LLP+ ++P++ Y L  L L+ I+D++++    D     
Sbjct: 3   IILAGGSGTRLYP-ITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQ 61

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV---SDVPPG 120
           ++ G  S   V+   +  A  P   G A A       +      +V GD +    D+   
Sbjct: 62  QLLGDGSQWGVN---LSYAVQPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDL 118

Query: 121 AVTAAHRRHDAVVTAMICSVPVS-GLSEAGSSGA----KDKTKKP-GRYNIIGM 168
              AA R   A V A   S P   G+ E  S+G     ++K  +P   Y + G+
Sbjct: 119 LKRAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEKPAQPKSNYAVTGL 172

Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286

>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 36/160 (22%)

Query: 4   QVVVLAGGTSKKLVPLVSKEV---PKALLPVANRPVLSYVLEQLELSNIKDLIVV----- 55
           + V+LAGG   ++    S+E    PK ++ +  +P+L ++++      I D I+      
Sbjct: 1   KAVILAGGLGTRI----SEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKG 56

Query: 56  -----------VEGADAALRVGGWISAAYVDRLHVE---VATVPEDVG----TAGALRAI 97
                      +  +D    +    +   V    VE   V  V  D G    T G L+ +
Sbjct: 57  YVIKEYFANYFLHMSDVTFHMAD--NTMEVHHKRVEPWRVTLV--DTGESTQTGGRLKRV 112

Query: 98  AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHD--AVVTA 135
             +L  +      GD V+D+   A+ A HR+H   A VTA
Sbjct: 113 REYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTA 152

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++LA G S ++         K LLP+  +P+L + L+    + +  +IVV+     A+R
Sbjct: 3   AIILAAGRSSRM------GGNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVR 56

Query: 65  VGGWISAAYVDRLHVEVATVP---EDVGT--AGALRAIAHHLTAKDVLVVSGDLVSDVPP 119
                  A +  L V V   P   E + +  A  L A+     A  VL++  D    V  
Sbjct: 57  -------AALAGLPVVVVINPDWEEGMSSSLAAGLEALPADADA--VLILLADQP-LVTA 106

Query: 120 G---AVTAAHRRHDA 131
               A+  A R   A
Sbjct: 107 ETLRALIDAFREDGA 121

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186

>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 4  QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          + V+ A G   + +P  +K +PK +LP+ ++PV+ Y++E+   + I+D+I+V 
Sbjct: 2  KAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVT 53

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267

>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          V+ A G   + +P  +K +PK +LP+ ++P++ Y++E+   + I+++++V 
Sbjct: 8  VIPAAGLGTRFLP-ATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVT 57

Length = 291

>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
           V+ A G   +        VPK  L +  RP+L + L+        D +VVV
Sbjct: 2  AVIPAAGRGTRF----GSGVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVV 49

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217

>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

 Score = 40.9 bits (97), Expect = 5e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          M    ++ A G   ++      + PK  LP+  +P+L + LE        D I+VV
Sbjct: 2  MMVYAIIPAAGKGSRM----GADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVV 53

Length = 227

>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 23/147 (15%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV----EG 58
             VV+LA G   ++       +PK L PVA RP++++ ++       + ++VV     E 
Sbjct: 8   LDVVILAAGQGTRM----KSALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQ 63

Query: 59  ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK--DVLVVSGD--LV 114
            +AAL+  G           V  A   + +GT  A  + A  LT    D+LV+ GD  L+
Sbjct: 64  VEAALQGSG-----------VAFARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLL 112

Query: 115 SDVPPGAVTAAHRRHDAVVTAMICSVP 141
                 A+ A HR   + +T +   +P
Sbjct: 113 RPDTLRALVADHRAQGSAMTILTGELP 139

Length = 481

>gnl|CDD|236492 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQL-ELSNIKDLIVVVEGA 59
           D  +V++A G S +     S EV K  L +  +P+  +VLE L      K+++VV+   
Sbjct: 4  SDISLVIVAAGRSTRF----SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPD 59

Query: 60 DAAL 63
          D A 
Sbjct: 60 DIAY 63

Length = 378

>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 25/153 (16%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQ-LELSNIKDLIVVVEGA 59
           M    V+LA G   ++       VPK  L +  RP+L + LE  LE   I +++VVV   
Sbjct: 3   MMVSAVILAAGFGSRM----GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPE 58

Query: 60  DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--- 116
           D                    V  V        ++      L+  D   V   LV D   
Sbjct: 59  DDPY-----FEKLPKLSADKRVEVVKGGATRQESVYNGLQALSKYDSDWV---LVHDAAR 110

Query: 117 --VPPGAVT---AAHRRHDAVVTAMICSVPVSG 144
             + P  +        ++ A + A    +PV+ 
Sbjct: 111 PFLTPKLIKRLIELADKYGAAILA----LPVTD 139

Length = 230

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 12/109 (11%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           VV+LA G   ++      ++PK L P+A +P+L +V++       + + VV  G  A   
Sbjct: 3   VVILAAGKGTRM----KSDLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVY-GHGAEQ- 56

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD 112
               +  A  +R  V      E +GT  A+      L    DVLV+ GD
Sbjct: 57  ----VRKALANR-DVNWVLQAEQLGTGHAVLQALPFLPDDGDVLVLYGD 100

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 14/63 (22%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           + + V+   G    ++P  +K +PK +LP+ ++P++ Y+++++  + IK++++V   + 
Sbjct: 2  TNLKAVIPVAGLGMHMLP-ATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASK 60

Query: 61 AAL 63
           A+
Sbjct: 61 NAV 63

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose [Regulatory functions, Protein interactions]. Length = 297

>gnl|CDD|224979 COG2068, COG2068, Uncharacterized MobA-related protein [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            VVLA G S ++        PK L P+  +P++    E    + +  +IVV     A   
Sbjct: 8   AVVLAAGRSSRM------GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVA--- 58

Query: 65  VGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHLTAKD--VLVVSGDLVSDVPPGA 121
                  A + +L V V   P+   G + +L+A      A+   V+++ GD+     P  
Sbjct: 59  ---EAVEALLAQLGVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDM-----PQV 110

Query: 122 VTAAHRR 128
             A  RR
Sbjct: 111 TPATVRR 117

Length = 199

>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 41/160 (25%)

Query: 5   VVVLAGGTSKKLVPLVSKE---VPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADA 61
           VV+LAGG   +L    S+E    PK ++ +  RP+L ++++        D I+       
Sbjct: 1   VVILAGGLGTRL----SEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFIL------- 49

Query: 62  ALRVGGWISAAY------------VDRLHVEV---ATVPE-------DVG----TAGALR 95
            L   G +   Y            +D     +    +  E       D G    T G L+
Sbjct: 50  CLGYKGHVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLK 109

Query: 96  AIAHHL-TAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVT 134
            +  +L   +  ++  GD VSDV   A+   HR H  + T
Sbjct: 110 RVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSHGKLAT 149

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG1462	433	consensus Translation initiation factor 2B, gamma	100.0
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	100.0
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	100.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
KOG1461	673	consensus Translation initiation factor 2B, epsilo	100.0
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PLN02241	436	glucose-1-phosphate adenylyltransferase	100.0
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	100.0
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	100.0
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	100.0
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	100.0
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	100.0
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	100.0
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	100.0
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	100.0
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	100.0
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	100.0
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	100.0
PRK10122	297	GalU regulator GalF; Provisional	100.0
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	100.0
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	100.0
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	100.0
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	100.0
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	100.0
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	100.0
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.98
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	99.98
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.97
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	99.97
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.97
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.97
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.97
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.97
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.97
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.97
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.96
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.96
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.95
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.94
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.94
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.94
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.94
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.94
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.94
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	99.93
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.92
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.9
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.87
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.85
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.85
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.82
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	99.77
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.76
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	99.73
PLN02917	293	CMP-KDO synthetase	99.69
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	99.65
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	99.64
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	99.62
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	99.6
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.55
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	99.54
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	99.51
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	99.51
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	99.5
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	99.49
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	99.49
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.48
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.46
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.43
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	99.43
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	99.42
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	99.4
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	99.39
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	99.38
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	99.38
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.33
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	99.31
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	99.31
COG2068	199	Uncharacterized MobA-related protein [General func	99.3
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	99.21
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	99.18
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	99.13
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	99.12
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	99.09
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	99.0
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	98.91
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	98.81
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	98.79
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	98.61
COG1861	241	SpsF Spore coat polysaccharide biosynthesis protei	98.55
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	98.39
cd00897	300	UGPase_euk Eukaryotic UGPase catalyses the synthes	97.94
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	97.83
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	97.74
PF01704	420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	97.54
PLN02435	493	probable UDP-N-acetylglucosamine pyrophosphorylase	97.17
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	97.1
COG4284	472	UDP-glucose pyrophosphorylase [Carbohydrate transp	97.04
PLN02830	615	UDP-sugar pyrophosphorylase	96.75
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	96.72
cd06424	315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	96.7
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	95.98
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	95.73
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	92.97
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	92.97
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	92.85
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	91.7
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	91.6
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	91.45
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	91.3
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	91.09
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	90.71
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	90.59
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	89.26
PRK10073	328	putative glycosyl transferase; Provisional	88.95
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	88.61
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	88.53
PRK14583	444	hmsR N-glycosyltransferase; Provisional	87.44
PRK11204	420	N-glycosyltransferase; Provisional	87.14
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	86.93
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	86.82
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	85.68
PRK10018	279	putative glycosyl transferase; Provisional	85.34
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	84.44
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	84.39
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	83.34
KOG2978	238	consensus Dolichol-phosphate mannosyltransferase [	83.17
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	82.72
KOG2388	477	consensus UDP-N-acetylglucosamine pyrophosphorylas	82.63
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	81.79
cd06438	183	EpsO_like EpsO protein participates in the methano	81.63
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	81.42
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	81.21
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	81.17

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.2e-47  Score=341.97  Aligned_cols=296  Identities=32%  Similarity=0.518  Sum_probs=228.0

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |+|||||+|||.||||-.+ +...|||||||+|+|||+|+|++|.++|+++|+|++.... .+.++.++.+.+.-++...
T Consensus         8 ~efqavV~a~~ggt~~p~~-~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e-~~~i~~al~~~~~l~~~~~   85 (433)
T KOG1462|consen    8 SEFQAVVLAGGGGTRMPEV-TSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDE-KLDIESALGSNIDLKKRPD   85 (433)
T ss_pred             HHhhhheeecCCceechhh-hhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHH-HHHHHHHHhcCCccccccc
Confidence            4789999999999999777 8999999999999999999999999999999999998533 2456666655332222211


Q ss_pred             EEEc----CCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849           81 VATV----PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (365)
Q Consensus        81 i~~~----~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (365)
                      ++..    .+..||+++|+.....+..+|||+++||+|++.++..+++.++..++...|++.....    +...++.+.+
T Consensus        86 ~v~ip~~~~~d~gtadsLr~Iy~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s----~~~~pgqk~k  161 (433)
T KOG1462|consen   86 YVEIPTDDNSDFGTADSLRYIYSKIKSEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALS----EVPIPGQKGK  161 (433)
T ss_pred             EEEeecccccccCCHHHHhhhhhhhccCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccc----cccccCcccc
Confidence            2222    2357999999999998987899999999999999999999999888877777663221    1112333322


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccc
Q 017849          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD  236 (365)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d  236 (365)
                        +.+...++.++++++++.+.....+.++++.+++++||+||++++.++|.|+|+|+|++|+++ ++.+++...||+.+
T Consensus       162 --~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d-~l~~~~sisSfk~~  238 (433)
T KOG1462|consen  162 --KKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVID-LLSEKESISSFKAD  238 (433)
T ss_pred             --cccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHH-HHhcCCcceeeccc
Confidence              235678899999998888877777889999999999999999999999999999999999996 55777889999999


Q ss_pred             hhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEe
Q 017849          237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL  316 (365)
Q Consensus       237 ~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri  316 (365)
                      |+|+|+++|+++.....+...              .++   +.|.+   ..+.+...+  .++.+||+|+.+.++-|.|+
T Consensus       239 f~P~lvkkQ~q~~~~~~~~~~--------------~~l---~t~~~---~~~d~~~~~--~d~ik~y~~~~p~e~~~~ra  296 (433)
T KOG1462|consen  239 FLPYLVKKQFQKNPPLKKNET--------------SIL---PTPNL---NNPDGIHSP--DDRIKCYAYILPTESLFVRA  296 (433)
T ss_pred             ccchhhhhhhhcCCCcccccc--------------ccc---CCccc---cCcccccCc--ccceeeeEEEccCccceEEe
Confidence            999999999976544222111              011   11111   111111111  13689999999988899999


Q ss_pred             CCHHHHHHHhH
Q 017849          317 NSIQAFMDINR  327 (365)
Q Consensus       317 ~~~~~Y~~~n~  327 (365)
                      ||+.+|+++||
T Consensus       297 NtL~~y~eiN~  307 (433)
T KOG1462|consen  297 NTLLSYMEINR  307 (433)
T ss_pred             cchHHHHhhhH
Confidence            99999999996

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3e-42  Score=306.51  Aligned_cols=232  Identities=23%  Similarity=0.433  Sum_probs=190.0

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      .|.||||.||.||||+|| |..+|||++||+|+|||+|++++|.++|+++|++++++..  +++..|+...+..++++++
T Consensus         9 ~vkaiILvGG~GTRLrPL-T~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s--~sl~~~~~k~y~~~lgVei   85 (371)
T KOG1322|consen    9 SVKAIILVGGYGTRLRPL-TLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNS--ESLNRHLSKAYGKELGVEI   85 (371)
T ss_pred             ceeEEEEecCCCceeece-eccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCc--HHHHHHHHHHhhhccceEE
Confidence            478999999999999999 9999999999999999999999999999999999999874  4677776655555677777


Q ss_pred             EE--cCCCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849           82 AT--VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (365)
Q Consensus        82 ~~--~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (365)
                      +.  +.+++|+++.+..+++++-   +.+|+|++||+++..++.++++.|+++++++|+++..+.               
T Consensus        86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd---------------  150 (371)
T KOG1322|consen   86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD---------------  150 (371)
T ss_pred             EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc---------------
Confidence            65  4456666666666665543   337999999999999999999999999999999988764               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccc
Q 017849          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD  236 (365)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d  236 (365)
                        +++.||++.+|+++.++..|.     ||+.             ...++.+|+|||+|++++|+.++ ..  -.|+..+
T Consensus       151 --epSkyGvv~~d~~~grV~~F~-----EKPk-------------d~vsnkinaGiYi~~~~vL~ri~-~~--ptSiekE  207 (371)
T KOG1322|consen  151 --EPSKYGVVVIDEDTGRVIRFV-----EKPK-------------DLVSNKINAGIYILNPEVLDRIL-LR--PTSIEKE  207 (371)
T ss_pred             --CccccceEEEecCCCceeEeh-----hCch-------------hhhhccccceEEEECHHHHhHhh-hc--ccchhhh
Confidence              378899999999554567776     4432             23567889999999999999886 32  3679999


Q ss_pred             hhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEe
Q 017849          237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL  316 (365)
Q Consensus       237 ~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri  316 (365)
                      .+|.+++.                                                       .++|||.+  +|||..|
T Consensus       208 ifP~~a~~-------------------------------------------------------~~l~a~~l--~gfWmDI  230 (371)
T KOG1322|consen  208 IFPAMAEE-------------------------------------------------------HQLYAFDL--PGFWMDI  230 (371)
T ss_pred             hhhhhhhc-------------------------------------------------------CceEEEec--Cchhhhc
Confidence            99976644                                                       34689999  8999999


Q ss_pred             CCHHHHHHHhHHHhh
Q 017849          317 NSIQAFMDINRDVIG  331 (365)
Q Consensus       317 ~~~~~Y~~~n~~~l~  331 (365)
                      .++++|+++=.-.++
T Consensus       231 Gqpkdf~~g~~~Yl~  245 (371)
T KOG1322|consen  231 GQPKDFLTGFSFYLR  245 (371)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999444444

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-39  Score=306.34  Aligned_cols=237  Identities=23%  Similarity=0.451  Sum_probs=195.5

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      .|+|||||||+||||+|| |..+||||+||+|||||+|+|++|..+|+++|+|.+++.  .+.+.+++.+.+.....+.+
T Consensus         1 ~mkavILagG~GtRLrPl-T~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~--~~~i~~~~~d~~~~~~~I~y   77 (358)
T COG1208           1 PMKAVILAGGYGTRLRPL-TDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYL--GEQIEEYFGDGEGLGVRITY   77 (358)
T ss_pred             CceEEEEeCCcccccccc-ccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccc--hHHHHHHHhcccccCCceEE
Confidence            378999999999999999 999999999999999999999999999999999999876  46888888864222356778


Q ss_pred             EEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCC
Q 017849           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (365)
                      +.+..+.||+++|+.+.+++..++|++++||.+++.|+..+++.|+++++.+|++.....                 .+.
T Consensus        78 ~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~-----------------~~~  140 (358)
T COG1208          78 VVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL-----------------DPS  140 (358)
T ss_pred             EecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC-----------------CCC
Confidence            877889999999999999997789999999999999999999999998888888776543                 245


Q ss_pred             cceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccchhhHH
Q 017849          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYL  241 (365)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~lp~l  241 (365)
                      .||++..++++.++..+.+++..+                ...++++++|+|+|++++|+.+ .. ....++..+++|.|
T Consensus       141 ~~Gvv~~~~~~~~v~~f~ekp~~~----------------~~~~~~in~Giyi~~~~v~~~i-~~-~~~~~~~~~~~~~l  202 (358)
T COG1208         141 EFGVVETDDGDGRVVEFREKPGPE----------------EPPSNLINAGIYIFDPEVFDYI-EK-GERFDFEEELLPAL  202 (358)
T ss_pred             cCceEEecCCCceEEEEEecCCCC----------------CCCCceEEeEEEEECHHHhhhc-cc-CCcccchhhHHHHH
Confidence            789888885544567776433111                2356899999999999999733 43 23467777899998


Q ss_pred             HHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHH
Q 017849          242 VRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQA  321 (365)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~  321 (365)
                      ++.+.                                                      .+++|.+  +|||..|.++.+
T Consensus       203 ~~~~~------------------------------------------------------~v~~~~~--~g~W~dig~p~d  226 (358)
T COG1208         203 AAKGE------------------------------------------------------DVYGYVF--EGYWLDIGTPED  226 (358)
T ss_pred             HhCCC------------------------------------------------------cEEEEEe--CCeEEeCCCHHH
Confidence            86631                                                      3588888  779999999999


Q ss_pred             HHHHhHHHhhh
Q 017849          322 FMDINRDVIGE  332 (365)
Q Consensus       322 Y~~~n~~~l~~  332 (365)
                      |.++|+.+++.
T Consensus       227 ~~~a~~~~~~~  237 (358)
T COG1208         227 LLEANELLLRG  237 (358)
T ss_pred             HHHHHHHHHhc
Confidence            99999999963

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-40  Score=306.80  Aligned_cols=238  Identities=22%  Similarity=0.360  Sum_probs=196.4

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHh---hhcCC-
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA---AYVDR-   76 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~---~~~~~-   76 (365)
                      ++.|+|||||.|+||.|| |..|+||.+||||| +||||+|++|.++|+.+|.|++.++.+  .+.+|++.   |.+++ 
T Consensus         5 ~~laiILaGg~G~rL~~L-T~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~--SL~~Hi~~G~~w~l~~~   81 (393)
T COG0448           5 NVLAIILAGGRGSRLSPL-TKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSH--SLNDHIGRGWPWDLDRK   81 (393)
T ss_pred             ceEEEEEcCCCCCccchh-hhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchh--HHHHHhhCCCccccccc
Confidence            467999999999999999 99999999999999 999999999999999999999998854  89999985   32332 


Q ss_pred             -cceEEEEc----C---CCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 017849           77 -LHVEVATV----P---EDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (365)
Q Consensus        77 -~~v~i~~~----~---~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~  145 (365)
                       -++.++..    .   ...||++|+++.+..+.   .+++|+++||+|+++|++++++.|++++|++|+++.+++..  
T Consensus        82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~--  159 (393)
T COG0448          82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPRE--  159 (393)
T ss_pred             cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChH--
Confidence             24555432    1   24899999999877665   46799999999999999999999999999999999988642  


Q ss_pred             ccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                                   +.++||++.+|+++++ ..|.+++..+.                ....++++|+|||++++|..++.
T Consensus       160 -------------eas~fGim~~D~~~~i-~~F~eKp~~~~----------------~~~~laSMgiYIf~~~~L~~~L~  209 (393)
T COG0448         160 -------------EASRFGVMNVDENGRI-IEFVEKPADGP----------------PSNSLASMGIYIFNTDLLKELLE  209 (393)
T ss_pred             -------------hhhhcCceEECCCCCE-EeeeeccCcCC----------------cccceeeeeeEEEcHHHHHHHHH
Confidence                         3678999999999986 56664332210                12238999999999999999987


Q ss_pred             cC----ccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeE
Q 017849          226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (365)
Q Consensus       226 ~~----~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (365)
                      +.    ....++.+|+||.+++..                                                       .
T Consensus       210 ~~~~~~~~~~DfgkdiIp~~~~~~-------------------------------------------------------~  234 (393)
T COG0448         210 EDAKDPNSSHDFGKDIIPKLLERG-------------------------------------------------------K  234 (393)
T ss_pred             HHhcccCccccchHHHHHHHHhcC-------------------------------------------------------C
Confidence            53    245677888888866442                                                       2


Q ss_pred             EEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 017849          302 CCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (365)
Q Consensus       302 ~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~  331 (365)
                      ++||.+  +|||..|.|+.+||++|||+|+
T Consensus       235 v~AY~f--~gYw~dVgTi~syy~aNmdLl~  262 (393)
T COG0448         235 VYAYEF--SGYWRDVGTIDSYYEANMDLLS  262 (393)
T ss_pred             EEEEec--cchhhhcccHHHHHHhhHHhcC
Confidence            699999  8899999999999999999997

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-37  Score=294.82  Aligned_cols=259  Identities=25%  Similarity=0.423  Sum_probs=214.7

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHh--hhcCCcc--
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA--AYVDRLH--   78 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~--~~~~~~~--   78 (365)
                      +|||++|..+.+||+|+ |..+|++|+|++|.|||+|+|++|..+|+.+|+|+|+.+  +.++.+|++.  |+. .+.  
T Consensus        25 LqAIllaDsf~trF~Pl-t~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~--~~qi~e~i~~sew~~-~~~~~  100 (673)
T KOG1461|consen   25 LQAILLADSFETRFRPL-TLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAH--AAQIIEYIEKSEWYL-PMSFI  100 (673)
T ss_pred             eEEEEEeccchhccccc-ccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEeccc--HHHHHHHHhhccccc-cccce
Confidence            68999999999999999 999999999999999999999999999999999999865  3589999975  433 223  


Q ss_pred             eEEEEcCCCCChHHHHHHH-HHHcCCCcEEEEeCCcccCCChHHHHHHHHhc-----CCeEEEEEeeeccCCCccCCCCC
Q 017849           79 VEVATVPEDVGTAGALRAI-AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGSSG  152 (365)
Q Consensus        79 v~i~~~~~~~gt~~al~~~-~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~-----~a~~t~l~~~~~~~~~~~~~~~~  152 (365)
                      +..+..++....||+||.. .+.+..++|++++||++++.+|.++++.|+++     ++.|||++.+...          
T Consensus       101 v~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st----------  170 (673)
T KOG1461|consen  101 VVTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESST----------  170 (673)
T ss_pred             EEEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEecccc----------
Confidence            3333334568899999998 45666799999999999999999999999653     7889999876421          


Q ss_pred             CccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccc
Q 017849          153 AKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQS  232 (365)
Q Consensus       153 ~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s  232 (365)
                           +....-.++++|..+.+++++......+....++.+++..++.+.+++++.+|+|-|||+.++..| .++|||+ 
T Consensus       171 -----~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF-~dNFDyq-  243 (673)
T KOG1461|consen  171 -----RETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLF-TDNFDYQ-  243 (673)
T ss_pred             -----ccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHh-hhcccce-
Confidence                 112344678899988888888642222345788999999999999999999999999999999755 8889999 


Q ss_pred             cccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCce
Q 017849          233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY  312 (365)
Q Consensus       233 ~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  312 (365)
                      .|.||+..++...+.                                                   ..+||+|+.++..|
T Consensus       244 ~r~DfV~GvL~~dil---------------------------------------------------g~kI~~~~~~~~~y  272 (673)
T KOG1461|consen  244 TRDDFVRGVLVDDIL---------------------------------------------------GYKIHVHVLSSIDY  272 (673)
T ss_pred             ehhhhhhhhhhhhhc---------------------------------------------------CCeEEEEEcChhhh
Confidence            899999877665442                                                   26899999876669


Q ss_pred             EEEeCCHHHHHHHhHHHhhhh
Q 017849          313 CVRLNSIQAFMDINRDVIGEA  333 (365)
Q Consensus       313 ~~ri~~~~~Y~~~n~~~l~~~  333 (365)
                      +.|++++++|..+|+|+|+||
T Consensus       273 A~rv~n~~syd~vSkDiI~RW  293 (673)
T KOG1461|consen  273 AARVENLRSYDLVSKDIIQRW  293 (673)
T ss_pred             hhhhcccHHHHHHHHHHHHhh
Confidence            999999999999999999998

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=8.6e-37  Score=295.90  Aligned_cols=246  Identities=23%  Similarity=0.344  Sum_probs=186.6

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-cCCcce
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRLHV   79 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~~~~v   79 (365)
                      +++|||||||.||||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++.  .+.+.+|+...| ..+...
T Consensus         5 ~~~avILAaG~GtRl~PL-T~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~   81 (407)
T PRK00844          5 KVLAIVLAGGEGKRLMPL-TADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYK--SHSLDRHISQTWRLSGLLG   81 (407)
T ss_pred             ceEEEEECCCCCCccchh-hcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHHhCcCccccCC
Confidence            489999999999999999 99999999999999 9999999999999999999999976  458899996422 112222


Q ss_pred             EEEEc-C--------CCCChHHHHHHHHHHcCC---CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcc
Q 017849           80 EVATV-P--------EDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSE  147 (365)
Q Consensus        80 ~i~~~-~--------~~~gt~~al~~~~~~i~~---~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~  147 (365)
                      .++.. +        ...||++|++.+++++.+   ++|+|++||++++.++.++++.|+++++++|+++...+.+    
T Consensus        82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~----  157 (407)
T PRK00844         82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPRE----  157 (407)
T ss_pred             CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchH----
Confidence            23221 1        148999999999998853   3499999999999999999999999999999888654321    


Q ss_pred             CCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc-
Q 017849          148 AGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ-  226 (365)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~-  226 (365)
                                 .+..||++.+|++++ +..+.+++......  +         ....+.++++|+|+|++++|..++++ 
T Consensus       158 -----------~~~~~Gvv~~d~~g~-v~~~~eKp~~~~~~--~---------~~~~~~~~~~Giyi~~~~~l~~~l~~~  214 (407)
T PRK00844        158 -----------EASAFGVIEVDPDGR-IRGFLEKPADPPGL--P---------DDPDEALASMGNYVFTTDALVDALRRD  214 (407)
T ss_pred             -----------HcccCCEEEECCCCC-EEEEEECCCCcccc--c---------CCCCCcEEEeEEEEEeHHHHHHHHHHh
Confidence                       256789999998776 45666433211100  0         01225789999999999998665553 


Q ss_pred             ---CccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEE
Q 017849          227 ---KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC  303 (365)
Q Consensus       227 ---~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (365)
                         .....++..|++|.|++++                                                       +++
T Consensus       215 ~~~~~~~~~~~~dii~~l~~~~-------------------------------------------------------~v~  239 (407)
T PRK00844        215 AADEDSSHDMGGDIIPRLVERG-------------------------------------------------------RAY  239 (407)
T ss_pred             hcCCcccccchhhHHHHHhccC-------------------------------------------------------eEE
Confidence               1234566779999887653                                                       234


Q ss_pred             EEEe----------cCCceEEEeCCHHHHHHHhHHHhhh
Q 017849          304 VYIA----------SNSKYCVRLNSIQAFMDINRDVIGE  332 (365)
Q Consensus       304 ~~~~----------~~~~y~~ri~~~~~Y~~~n~~~l~~  332 (365)
                      +|.+          ..+|||.+|+++.+|+++||++|++
T Consensus       240 ~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~  278 (407)
T PRK00844        240 VYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSV  278 (407)
T ss_pred             EEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCC
Confidence            5543          1258999999999999999999963

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=1e-36  Score=296.79  Aligned_cols=253  Identities=22%  Similarity=0.352  Sum_probs=196.6

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-cCCc--
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRL--   77 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~~~--   77 (365)
                      +++|||||||.|+||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++.  .+.+.+|+.+.+ ....  
T Consensus         3 ~~~AVILAaG~GtRL~PL-T~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~--~~~i~~~l~~~~~~~~~~~   79 (429)
T PRK02862          3 RVLAIILGGGAGTRLYPL-TKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFN--SASLNRHISQTYNFDGFSG   79 (429)
T ss_pred             cEEEEEECCCCCCcchhh-hcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCC--HHHHHHHHhcCcCccccCC
Confidence            468999999999999999 99999999999999 9999999999999999999999975  358888887522 1111  


Q ss_pred             c-eEEEE--c--CC---CCChHHHHHHHHHHcCC---CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCc
Q 017849           78 H-VEVAT--V--PE---DVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLS  146 (365)
Q Consensus        78 ~-v~i~~--~--~~---~~gt~~al~~~~~~i~~---~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~  146 (365)
                      + +.+..  +  .+   ..||++|++.+++++..   ++|+|++||++++.++..+++.|++.++++|+++.+.+..   
T Consensus        80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~---  156 (429)
T PRK02862         80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEK---  156 (429)
T ss_pred             CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChh---
Confidence            2 22221  1  11   27999999999988852   6799999999999999999999999999999988654311   


Q ss_pred             cCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccc--cccccccHHHHhhcCc-ceeccCcccceeeeeCHHHHHHH
Q 017849          147 EAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAEL--EKDTRIRKSILRAVGQ-MDIRADLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~--ek~~~i~~~~l~~~~~-~~~~~~l~~~giyi~s~~vl~~~  223 (365)
                                  .+..||++.+|+++++ ..+.++++.  .+.+.++.++|...+. ......++++|+|+|++++|..+
T Consensus       157 ------------~~~~yG~i~~d~~g~V-~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~  223 (429)
T PRK02862        157 ------------DASGFGLMKTDDDGRI-TEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDL  223 (429)
T ss_pred             ------------hcccceEEEECCCCcE-EEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHH
Confidence                        2567899999987765 566665432  1234556666655442 22345689999999999999877


Q ss_pred             HhcCccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEE
Q 017849          224 LDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC  303 (365)
Q Consensus       224 ~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (365)
                      +.+.+++.++.+|++|.+++.                                                       .+++
T Consensus       224 l~~~~~~~~~~~dil~~l~~~-------------------------------------------------------~~v~  248 (429)
T PRK02862        224 LNKNPEYTDFGKEIIPEAIRD-------------------------------------------------------YKVQ  248 (429)
T ss_pred             HHHCCChhhhHHHHHHHHhcc-------------------------------------------------------CcEE
Confidence            766555567778999886522                                                       2467


Q ss_pred             EEEecCCceEEEeCCHHHHHHHhHHHh
Q 017849          304 VYIASNSKYCVRLNSIQAFMDINRDVI  330 (365)
Q Consensus       304 ~~~~~~~~y~~ri~~~~~Y~~~n~~~l  330 (365)
                      +|.+  +|||.+++|+.+|+++|++++
T Consensus       249 ~~~~--~g~w~digt~~~y~~an~~l~  273 (429)
T PRK02862        249 SYLF--DGYWEDIGTIEAFYEANLALT  273 (429)
T ss_pred             EEEe--CCEEEeCCCHHHHHHHHHHHH
Confidence            8877  789999999999999999998

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=1.4e-36  Score=296.54  Aligned_cols=256  Identities=19%  Similarity=0.326  Sum_probs=192.1

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-cC-C--
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VD-R--   76 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~-~--   76 (365)
                      +|+|||||||+|+||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++.  .+.+.+|++..| .+ .  
T Consensus         3 ~~~aIIlA~G~gtRl~Pl-T~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~--~~~i~~~l~~~~~~~~~~~   79 (436)
T PLN02241          3 SVAAIILGGGAGTRLFPL-TKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN--SASLNRHLSRAYNFGNGGN   79 (436)
T ss_pred             ceEEEEEeCCCCCcchhh-hcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccC--HHHHHHHHhccCCCCCCcc
Confidence            589999999999999999 99999999999997 9999999999999999999999976  358899997532 11 0  


Q ss_pred             ---cceEEEE--cC-----CCCChHHHHHHHHHHcC------CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeee
Q 017849           77 ---LHVEVAT--VP-----EDVGTAGALRAIAHHLT------AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSV  140 (365)
Q Consensus        77 ---~~v~i~~--~~-----~~~gt~~al~~~~~~i~------~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~  140 (365)
                         ..+.+..  +.     .+.|++++++.++.++.      .++||+++||++++.++.++++.|+++++++|+++.++
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v  159 (436)
T PLN02241         80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPV  159 (436)
T ss_pred             cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEec
Confidence               1133322  21     35899999998876653      36899999999999999999999999999999988765


Q ss_pred             ccCCCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccc--cccccHHHHhhcC-cceeccCcccceeeeeCH
Q 017849          141 PVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVG-QMDIRADLMDAHMYAFNR  217 (365)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek--~~~i~~~~l~~~~-~~~~~~~l~~~giyi~s~  217 (365)
                      +..               ++..|+++.+|++++ +..+.+++....  ..+++.++|...+ .++...+++++|+|+|++
T Consensus       160 ~~~---------------~~~~ygvv~~d~~~~-v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~  223 (436)
T PLN02241        160 DES---------------RASDFGLMKIDDTGR-IIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKK  223 (436)
T ss_pred             chh---------------hcCcceEEEECCCCC-EEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEH
Confidence            421               256789999988776 467765442211  1222333322111 122235799999999999


Q ss_pred             HHHHHHHhcCcc-ccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCC
Q 017849          218 SVLQEVLDQKDK-FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPV  296 (365)
Q Consensus       218 ~vl~~~~~~~~~-~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (365)
                      ++|..++++.+. ..++..|++|.+++.+                                                   
T Consensus       224 ~~l~~ll~~~~~~~~~~~~dil~~l~~~g---------------------------------------------------  252 (436)
T PLN02241        224 DVLLKLLRWRFPTANDFGSEIIPGAIKEG---------------------------------------------------  252 (436)
T ss_pred             HHHHHHHHhhcccccchhHHHHHHHhhcC---------------------------------------------------
Confidence            999777664322 2245567777665432                                                   


Q ss_pred             CceeEEEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 017849          297 RRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (365)
Q Consensus       297 ~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~  332 (365)
                         .++++|.+  +|||.+|+++.+|+++||++|..
T Consensus       253 ---~~v~~~~~--~gyw~dIg~~~~y~~a~~~~l~~  283 (436)
T PLN02241        253 ---YNVQAYLF--DGYWEDIGTIKSFYEANLALTKQ  283 (436)
T ss_pred             ---CeEEEEee--CCEEEECCCHHHHHHHHHHHhcC
Confidence               35788888  78999999999999999999964

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=3.8e-36  Score=289.53  Aligned_cols=238  Identities=21%  Similarity=0.375  Sum_probs=184.6

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhh--h-cCC-
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAA--Y-VDR-   76 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~--~-~~~-   76 (365)
                      +|+|||||||+||||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++.  .+.+.+|+++.  | .+. 
T Consensus         3 ~m~avILAaG~GtRl~pl-T~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~   79 (380)
T PRK05293          3 EMLAMILAGGQGTRLGKL-TKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQ--PLELNNHIGIGSPWDLDRI   79 (380)
T ss_pred             cEEEEEECCCCCcccchh-hcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCC--HHHHHHHHhCCCcccccCC
Confidence            499999999999999999 99999999999999 9999999999999999999999976  45888888641  1 111 


Q ss_pred             -cceEEE--E--cCC---CCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 017849           77 -LHVEVA--T--VPE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (365)
Q Consensus        77 -~~v~i~--~--~~~---~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~  145 (365)
                       .++.+.  .  +.+   +.||++|++.+++++.   .++|+|++||.+++.++.++++.|++.++++|+++...+..  
T Consensus        80 ~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~--  157 (380)
T PRK05293         80 NGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWE--  157 (380)
T ss_pred             CCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchh--
Confidence             123332  2  222   4899999999999885   25799999999999999999999999889888877654321  


Q ss_pred             ccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                                   ++..||++.+|+++++ ..+.+     |+.             ...++++++|+|+|++++|..+++
T Consensus       158 -------------~~~~yG~v~~d~~g~V-~~~~e-----Kp~-------------~~~~~~~~~Giyi~~~~~l~~~l~  205 (380)
T PRK05293        158 -------------EASRFGIMNTDENMRI-VEFEE-----KPK-------------NPKSNLASMGIYIFNWKRLKEYLI  205 (380)
T ss_pred             -------------hccccCEEEECCCCcE-EEEEe-----CCC-------------CCCcceeeeEEEEEcHHHHHHHHH
Confidence                         2567899999877654 56653     321             112478899999999999977765


Q ss_pred             cCc----cccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeE
Q 017849          226 QKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (365)
Q Consensus       226 ~~~----~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (365)
                      +..    ...++..|+++.+++++                                                      .+
T Consensus       206 ~~~~~~~~~~~~~~d~i~~l~~~~------------------------------------------------------~~  231 (380)
T PRK05293        206 EDEKNPNSSHDFGKNVIPLYLEEG------------------------------------------------------EK  231 (380)
T ss_pred             HHhhcCCchhhhHHHHHHHHhhcC------------------------------------------------------Ce
Confidence            321    22344467777766442                                                      35


Q ss_pred             EEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 017849          302 CCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (365)
Q Consensus       302 ~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~  332 (365)
                      +++|..  +|||..++++.+|+++|++++..
T Consensus       232 v~~~~~--~g~w~digt~~~~~~a~~~~l~~  260 (380)
T PRK05293        232 LYAYPF--KGYWKDVGTIESLWEANMELLRP  260 (380)
T ss_pred             EEEEEe--CCEEEeCCCHHHHHHHHHHHcCC
Confidence            688877  68999999999999999999964

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=8.8e-36  Score=289.94  Aligned_cols=245  Identities=20%  Similarity=0.289  Sum_probs=185.4

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcc-hHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc-CC--c
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRP-VLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR--L   77 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkp-lI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~--~   77 (365)
                      +++|||||||.||||+|| |..+||||+||+|+| ||+|+|++|.++|+++|+|++++.  .+.+.+|+.+.|. .+  .
T Consensus        15 ~~~aVILAaG~GtRl~pL-T~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~--~~~i~~~~~~~~~~~~~~~   91 (425)
T PRK00725         15 DTLALILAGGRGSRLKEL-TDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYK--AHSLIRHIQRGWSFFREEL   91 (425)
T ss_pred             ceEEEEECCCCCCcchhh-hCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCC--HHHHHHHHHhhhcccccCC
Confidence            678999999999999999 999999999999996 999999999999999999999976  3588888875321 11  1


Q ss_pred             --ceEEEE-------cCCCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 017849           78 --HVEVAT-------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (365)
Q Consensus        78 --~v~i~~-------~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~  145 (365)
                        .+.+..       ++.+.||++|++.+++++.   +++|+|++||++++.++.++++.|+++++++|+++...+..  
T Consensus        92 ~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~--  169 (425)
T PRK00725         92 GEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE--  169 (425)
T ss_pred             CCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh--
Confidence              122221       1224899999999998885   35799999999999999999999999999999888664321  


Q ss_pred             ccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                                   ++..||++.+|++++ +..+.+++.....  .+         ....+.++++|+|+|++++|..++.
T Consensus       170 -------------~~~~yG~v~~d~~~~-V~~~~EKp~~~~~--~~---------~~~~~~l~n~GIYi~~~~~L~~~L~  224 (425)
T PRK00725        170 -------------EASAFGVMAVDENDR-ITAFVEKPANPPA--MP---------GDPDKSLASMGIYVFNADYLYELLE  224 (425)
T ss_pred             -------------hcccceEEEECCCCC-EEEEEECCCCccc--cc---------cCccceEEEeeEEEEeHHHHHHHHH
Confidence                         256899999998776 4566643321100  00         0112578999999999999866654


Q ss_pred             cC----ccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeE
Q 017849          226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (365)
Q Consensus       226 ~~----~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (365)
                      +.    ....++..|++|.+++++                                                       +
T Consensus       225 ~~~~~~~~~~~~~~dii~~l~~~~-------------------------------------------------------~  249 (425)
T PRK00725        225 EDAEDPNSSHDFGKDIIPKIVEEG-------------------------------------------------------K  249 (425)
T ss_pred             HhhcCCCccchhhHHHHHHHhccC-------------------------------------------------------c
Confidence            31    122355578888776442                                                       3


Q ss_pred             EEEEEecC---------CceEEEeCCHHHHHHHhHHHhh
Q 017849          302 CCVYIASN---------SKYCVRLNSIQAFMDINRDVIG  331 (365)
Q Consensus       302 ~~~~~~~~---------~~y~~ri~~~~~Y~~~n~~~l~  331 (365)
                      +++|.+.+         +|||.+|+|+.+|+++||++|.
T Consensus       250 v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~  288 (425)
T PRK00725        250 VYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLAS  288 (425)
T ss_pred             EEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcC
Confidence            46666532         4899999999999999999986

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=100.00  E-value=2.9e-34  Score=261.94  Aligned_cols=231  Identities=24%  Similarity=0.379  Sum_probs=178.4

Q ss_pred             EEEEcCC--CCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHh-CCCCeEEEEecCcchHHHHHHHHHhhhc-CCcceE
Q 017849            5 VVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYV-DRLHVE   80 (365)
Q Consensus         5 avIlA~G--~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~~~v~   80 (365)
                      |||||||  +|+||+|| |..+||||+||+|||||+|+|++|.+ +|+++|+|++++.  .+.+.+|+++... .+..+.
T Consensus         1 ~iIla~G~~~GtRl~pl-t~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~--~~~i~~~l~~~~~~~~~~i~   77 (257)
T cd06428           1 AVILVGGPQKGTRFRPL-SLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYP--ESVFSDFISDAQQEFNVPIR   77 (257)
T ss_pred             CEEEccCCCCCcccCCc-cCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCC--HHHHHHHHHhcccccCceEE
Confidence            6999999  89999999 99999999999999999999999999 6999999999875  3578888875311 122344


Q ss_pred             EEEcCCCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849           81 VATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (365)
                      ++.+....||+++++.+++++.   .++|+|++||++++.++..+++.|+++++++|+++.+.+..              
T Consensus        78 ~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~--------------  143 (257)
T cd06428          78 YLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASRE--------------  143 (257)
T ss_pred             EecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcccc--------------
Confidence            4445567999999999988874   36799999999999999999999999999999888764311              


Q ss_pred             CCCCcceEEEEc-CCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcC---------
Q 017849          158 KKPGRYNIIGMD-PTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK---------  227 (365)
Q Consensus       158 ~~~~~~~~v~~d-~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~---------  227 (365)
                       .+..|+++.+| ++++ +..+.+     |+.             ...++++++|+|+|++++|..+....         
T Consensus       144 -~~~~yg~v~~d~~~g~-v~~~~E-----kp~-------------~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~  203 (257)
T cd06428         144 -QASNYGCIVEDPSTGE-VLHYVE-----KPE-------------TFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQL  203 (257)
T ss_pred             -ccccccEEEEeCCCCe-EEEEEe-----CCC-------------CcccceEEEEEEEECHHHHHHHhhhcccccccccc
Confidence             25678999988 4554 567764     321             12357899999999999996554211         


Q ss_pred             ---------ccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCc
Q 017849          228 ---------DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR  298 (365)
Q Consensus       228 ---------~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (365)
                               ..+.++..|+++.++++                                                      
T Consensus       204 ~~~~~~~~~~~~~~~~~d~~~~l~~~------------------------------------------------------  229 (257)
T cd06428         204 GDDNNREGRAEVIRLEQDVLTPLAGS------------------------------------------------------  229 (257)
T ss_pred             ccccccccccceeeehhhhhhHHhcc------------------------------------------------------
Confidence                     12233445666655432                                                      


Q ss_pred             eeEEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 017849          299 THKCCVYIASNSKYCVRLNSIQAFMDINRDV  329 (365)
Q Consensus       299 ~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~  329 (365)
                       .++++|.+  +|||..|+|+.+|+++||.+
T Consensus       230 -~~v~~~~~--~g~w~dig~~~~~~~a~~~~  257 (257)
T cd06428         230 -GKLYVYKT--DDFWSQIKTAGSAIYANRLY  257 (257)
T ss_pred             -CCEEEecC--CCeeecCCCHHHHHhHhhcC
Confidence             24688888  78999999999999999864

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=100.00  E-value=6.7e-34  Score=255.81  Aligned_cols=228  Identities=21%  Similarity=0.407  Sum_probs=184.0

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |+|||||||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|+++++.  +.+.+|+..+ ....++.++
T Consensus         1 m~~iIlAaG~g~R~~~l-t~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~--~~~~~~l~~~-~~~~~~~i~   76 (233)
T cd06425           1 MKALILVGGYGTRLRPL-TLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRP--EDMVPFLKEY-EKKLGIKIT   76 (233)
T ss_pred             CcEEEecCCCccccCcc-ccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCH--HHHHHHHhcc-cccCCeEEE
Confidence            57999999999999999 9999999999999999999999999999999999998763  4788888754 222345554


Q ss_pred             E--cCCCCChHHHHHHHHHHcCC--CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849           83 T--VPEDVGTAGALRAIAHHLTA--KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (365)
Q Consensus        83 ~--~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (365)
                      .  +....|++++++.+.+++..  +++++++||++++.++.++++.|+++++++|+++.+.+                 
T Consensus        77 ~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  139 (233)
T cd06425          77 FSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE-----------------  139 (233)
T ss_pred             eccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC-----------------
Confidence            4  45578999999999998864  67999999999999999999999999999998876542                 


Q ss_pred             CCCcceEEEEcC-CCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccch
Q 017849          159 KPGRYNIIGMDP-TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDV  237 (365)
Q Consensus       159 ~~~~~~~v~~d~-~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~  237 (365)
                      .+..|+++.+|+ +++ +..+.+     |+.             ...++++++|+|+|++++|..+ .+  ...++..++
T Consensus       140 ~~~~~g~v~~d~~~~~-v~~~~e-----kp~-------------~~~~~~~~~Giyi~~~~~l~~l-~~--~~~~~~~~~  197 (233)
T cd06425         140 DPSKYGVVVHDENTGR-IERFVE-----KPK-------------VFVGNKINAGIYILNPSVLDRI-PL--RPTSIEKEI  197 (233)
T ss_pred             CccccCeEEEcCCCCE-EEEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHHhc-cc--Ccccchhhh
Confidence            145789999988 554 556653     321             1125789999999999999765 33  234566788


Q ss_pred             hhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeC
Q 017849          238 LPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLN  317 (365)
Q Consensus       238 lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~  317 (365)
                      ++.++++                                                       .++++|.+  +|||..|+
T Consensus       198 ~~~l~~~-------------------------------------------------------~~v~~~~~--~g~w~dig  220 (233)
T cd06425         198 FPKMASE-------------------------------------------------------GQLYAYEL--PGFWMDIG  220 (233)
T ss_pred             HHHHHhc-------------------------------------------------------CCEEEEee--CCEEEcCC
Confidence            8887644                                                       24688888  78999999


Q ss_pred             CHHHHHHHhHHHh
Q 017849          318 SIQAFMDINRDVI  330 (365)
Q Consensus       318 ~~~~Y~~~n~~~l  330 (365)
                      |+.+|+++++.+|
T Consensus       221 t~~~~~~a~~~~l  233 (233)
T cd06425         221 QPKDFLKGMSLYL  233 (233)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998765

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-35  Score=259.79  Aligned_cols=291  Identities=20%  Similarity=0.364  Sum_probs=211.0

Q ss_pred             CcceEEEEcCC--CCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHh-CCCCeEEEEecCcchHHHHHHHHHhhhcC-C
Q 017849            1 MDFQVVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVD-R   76 (365)
Q Consensus         1 M~~~avIlA~G--~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~~-~   76 (365)
                      |++.||||.||  +||||+|| +-+.||||+|++|+|||+|.++.|.+ .|+.+|+++--+.+  +.+.+++..-... +
T Consensus         1 ~~~~AVIlVGGP~kGTRFRPL-Sf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e--~~f~~fis~~~~e~~   77 (407)
T KOG1460|consen    1 MKVKAVILVGGPQKGTRFRPL-SFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEE--RVFTDFISAIQQEFK   77 (407)
T ss_pred             CceEEEEEecCCCCCcccccc-ccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccc--hHHHHHHHHHHhhcc
Confidence            78999999999  69999999 99999999999999999999999966 47999999876653  4667776542111 2


Q ss_pred             cceEEEEcCCCCChHHHHHHHHHHcCC---CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849           77 LHVEVATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (365)
Q Consensus        77 ~~v~i~~~~~~~gt~~al~~~~~~i~~---~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (365)
                      ..+++..++.+.||+++|++.++.|-.   +.+++++||..+++++.+|+++|+..++.+|++..++..+          
T Consensus        78 ~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e----------  147 (407)
T KOG1460|consen   78 VPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSRE----------  147 (407)
T ss_pred             cchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHh----------
Confidence            346667777889999999999887653   4699999999999999999999999999999998876521          


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcccccc
Q 017849          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL  233 (365)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~  233 (365)
                           ...+||.++-|++...++++.     ||+.             +.-++.++||+|+|++++|..+.+-    ..-
T Consensus       148 -----~asnfG~lV~dP~t~evlHYv-----eKPs-------------TfvSd~InCGvYlF~~eif~~i~~v----~~q  200 (407)
T KOG1460|consen  148 -----QASNFGCLVEDPSTGEVLHYV-----EKPS-------------TFVSDIINCGVYLFTPEIFNAIAEV----YRQ  200 (407)
T ss_pred             -----HhhccCeeeecCCcCceEEee-----cCcc-------------hhhhcccceeEEEecHHHHHHHHHH----HHH
Confidence                 366899999998777778887     4543             3567999999999999999766321    112


Q ss_pred             ccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceE
Q 017849          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (365)
Q Consensus       234 ~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  313 (365)
                      ++|++.-.  +++    ...+.-   +.++        -.|+..-+|.+.              +.-.+|+|..  .+||
T Consensus       201 ~~~~~~~~--~~~----~~l~~g---~~d~--------irLeqDvlspLa--------------g~k~lY~y~t--~~fW  247 (407)
T KOG1460|consen  201 RQDLLEVE--KDL----PLLQPG---PADF--------IRLEQDVLSPLA--------------GSKQLYAYET--TDFW  247 (407)
T ss_pred             HHhhhhhh--hcc----cccCCC---ccce--------EEeechhhhhhc--------------CCCceEEEec--ccHH
Confidence            22211110  011    001100   0000        001112222221              1235789987  7799


Q ss_pred             EEeCCHHHHHHHhHHHhhhhc---------------ccCCCCCCCCCCccCCCceeCCcccccCCC
Q 017849          314 VRLNSIQAFMDINRDVIGEAN---------------HLSGYNFSAQNNIIHPSAELGSKTTVSSSL  364 (365)
Q Consensus       314 ~ri~~~~~Y~~~n~~~l~~~~---------------~~~~~~~~~~~~~i~~~~~i~~~~~ig~~~  364 (365)
                      ..|.|..+=..+|+..|++..               .+.|+.|.+.+..+||+|+||+|++||+++
T Consensus       248 ~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~v  313 (407)
T KOG1460|consen  248 SQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANV  313 (407)
T ss_pred             HHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCc
Confidence            999999988889999987531               134667778888888888888888888876

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=2.3e-34  Score=275.34  Aligned_cols=241  Identities=22%  Similarity=0.349  Sum_probs=180.4

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc-CC---cce
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR---LHV   79 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~---~~v   79 (365)
                      |||||||.|+||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++..  +.+.+|+.+.+. .+   ..+
T Consensus         1 aiILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~   77 (361)
T TIGR02091         1 AMVLAGGRGSRLSPL-TKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKS--HSLNRHIQRGWDFDGFIDGFV   77 (361)
T ss_pred             CEEeCCCCCCccchh-hhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccCh--HHHHHHHHhccCccCccCCCE
Confidence            699999999999999 99999999999999 89999999999999999999999763  478888875321 11   123


Q ss_pred             EEEEc-------CCCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCC
Q 017849           80 EVATV-------PEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAG  149 (365)
Q Consensus        80 ~i~~~-------~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~  149 (365)
                      ++...       +...|++++++.+.+++.   .++|++++||++++.++.++++.|++.++++|+++...+..      
T Consensus        78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~------  151 (361)
T TIGR02091        78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRK------  151 (361)
T ss_pred             EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChH------
Confidence            33211       124799999999988775   35699999999999999999999998888888887654311      


Q ss_pred             CCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcC--
Q 017849          150 SSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK--  227 (365)
Q Consensus       150 ~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~--  227 (365)
                               .+..|+++.+|+++++ ..+.+     |+.... +. ..    .....++++|+|+|++++|.+++++.  
T Consensus       152 ---------~~~~~g~v~~d~~~~v-~~~~e-----kp~~~~-~~-~~----~~~~~~~~~Giyi~~~~~l~~~l~~~~~  210 (361)
T TIGR02091       152 ---------EASRFGVMQVDEDGRI-VDFEE-----KPANPP-SI-PG----MPDFALASMGIYIFDKDVLKELLEEDAD  210 (361)
T ss_pred             ---------hcccccEEEECCCCCE-EEEEE-----CCCCcc-cc-cc----cccccEEeeeEEEEcHHHHHHHHHHHhh
Confidence                     2567899999877764 56653     321100 00 00    00123899999999999986665531  


Q ss_pred             --ccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEE
Q 017849          228 --DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY  305 (365)
Q Consensus       228 --~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
                        ....++..|+++.|++++                                                       +|++|
T Consensus       211 ~~~~~~~~~~d~l~~l~~~~-------------------------------------------------------~v~~~  235 (361)
T TIGR02091       211 DPESSHDFGKDIIPRALEEG-------------------------------------------------------SVQAY  235 (361)
T ss_pred             cCCcccccHHHHHHHHhhcC-------------------------------------------------------ceEEE
Confidence              123345567787776442                                                       46888


Q ss_pred             EecCCceEEEeCCHHHHHHHhHHHhhh
Q 017849          306 IASNSKYCVRLNSIQAFMDINRDVIGE  332 (365)
Q Consensus       306 ~~~~~~y~~ri~~~~~Y~~~n~~~l~~  332 (365)
                      .+  ++||.+|+|+.+|+++|+++|.+
T Consensus       236 ~~--~~~w~digt~~~~~~a~~~~l~~  260 (361)
T TIGR02091       236 LF--SGYWRDVGTIDSFWEANMDLVSV  260 (361)
T ss_pred             ee--CCEEEECCCHHHHHHHHHHHhCC
Confidence            88  68999999999999999999974

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=100.00  E-value=1.1e-33  Score=261.47  Aligned_cols=236  Identities=15%  Similarity=0.319  Sum_probs=178.7

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc-------
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-------   74 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-------   74 (365)
                      +|+|||||||.||||+|+ |..+||||+||+|||||+|+|++|..+|+++|+|++++.  .+.+.+|+...+.       
T Consensus         3 ~mkavILAaG~GTRL~Pl-T~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~--~~~i~~~~~~~~~~~~~~~~   79 (297)
T TIGR01105         3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ   79 (297)
T ss_pred             ceEEEEECCCCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCC--hHHHHHHHhchHHHHHHHHH
Confidence            689999999999999999 999999999999999999999999999999999999976  4578888753210       


Q ss_pred             ---------------CCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccC--------CChHHHHHHHHhcCC
Q 017849           75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA  131 (365)
Q Consensus        75 ---------------~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--------~~l~~~l~~h~~~~a  131 (365)
                                     ....+.++.++++.||++|++.+.+++.+++|+|++||.+++        .++..+++.|.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~  159 (297)
T TIGR01105        80 RVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGR  159 (297)
T ss_pred             hcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCC
Confidence                           012456677788899999999999999767899999998876        589999999987777


Q ss_pred             eEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEc----CCCcE--EEEeeccccccccccccHHHHhhcCcceecc
Q 017849          132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQF--LLHIATGAELEKDTRIRKSILRAVGQMDIRA  205 (365)
Q Consensus       132 ~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~~--l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~  205 (365)
                      .++++.. ++ +               ++.+||++.++    +++++  +..+.     ||+....          ...+
T Consensus       160 ~~~~~~~-~~-~---------------~~~~yGvv~~~~~~d~~g~v~~I~~~~-----EKP~~~~----------~~~s  207 (297)
T TIGR01105       160 SQVLAKR-MP-G---------------DLSEYSVIQTKEPLDREGKVSRIVEFI-----EKPDQPQ----------TLDS  207 (297)
T ss_pred             cEEEEEE-cC-C---------------CCccceEEEecccccCCCCeeeEeEEE-----ECCCCcc----------cCCc
Confidence            6654432 21 1               25689999984    34542  34554     3432100          1246


Q ss_pred             CcccceeeeeCHHHHHHHHhcCcccccccc----chhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCc
Q 017849          206 DLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ----DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  281 (365)
Q Consensus       206 ~l~~~giyi~s~~vl~~~~~~~~~~~s~~~----d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (365)
                      +++++|+|+|++++|..+ +.... .+..+    |+++.|+++                                     
T Consensus       208 ~~~~~GiYi~~~~i~~~l-~~~~~-~~~ge~~ltd~i~~l~~~-------------------------------------  248 (297)
T TIGR01105       208 DLMAVGRYVLSADIWAEL-ERTEP-GAWGRIQLTDAIAELAKK-------------------------------------  248 (297)
T ss_pred             CEEEEEEEEECHHHHHHH-hcCCC-CCCCeeeHHHHHHHHHhc-------------------------------------
Confidence            899999999999999755 43221 12222    666665533                                     


Q ss_pred             ccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHH-hh
Q 017849          282 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-IG  331 (365)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~-l~  331 (365)
                                        -++++|.+  +|+|..|.++.+|.++|.++ |.
T Consensus       249 ------------------~~v~~~~~--~g~w~DiG~p~~~~~a~~~~~l~  279 (297)
T TIGR01105       249 ------------------QSVDAMLM--TGDSYDCGKKMGYMQAFVKYGLR  279 (297)
T ss_pred             ------------------CCEEEEEe--ccEEECCCCHHHHHHHHHHHHhc
Confidence                              14688888  78999999999999999886 44

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=100.00  E-value=3.5e-34  Score=259.90  Aligned_cols=237  Identities=28%  Similarity=0.552  Sum_probs=181.8

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +|||||||.||||+|| |..+||||+|++|+ |||+|+|++|.++|++++++++.... .+.+.+|+++.......+.++
T Consensus         1 kavIla~G~GtRl~pl-t~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~-~~~i~~~~~~~~~~~~~i~~i   78 (248)
T PF00483_consen    1 KAVILAGGKGTRLRPL-TDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYK-EEQIEEHLGSGYKFGVKIEYI   78 (248)
T ss_dssp             EEEEEEESCCGGGTTT-TTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTT-HHHHHHHHTTSGGGTEEEEEE
T ss_pred             CEEEECCCCCccCchh-hhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecc-cccccccccccccccccceee
Confidence            6999999999999999 99999999999999 99999999999999999666665332 457888887642112357777


Q ss_pred             EcCCCCChHHHHHHHHHHcCCCc----EEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849           83 TVPEDVGTAGALRAIAHHLTAKD----VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~----~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (365)
                      .++...||++|++.+.+.+..+.    |++++||++++.++.++++.|+++++++++.+...+..               
T Consensus        79 ~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------  143 (248)
T PF00483_consen   79 VQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE---------------  143 (248)
T ss_dssp             EESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS---------------
T ss_pred             ecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccccccccccccccc---------------
Confidence            88888999999999999887654    99999999999999999999999988543333332211               


Q ss_pred             CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh---cCcccccccc
Q 017849          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD---QKDKFQSLKQ  235 (365)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~---~~~~~~s~~~  235 (365)
                      .++.||++.+|++++ +..+.+     |+..            ...+.++++|+|+|++++|..+++   +......+-.
T Consensus       144 ~~~~~g~v~~d~~~~-V~~~~E-----KP~~------------~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~  205 (248)
T PF00483_consen  144 DPSRYGVVEVDEDGR-VIRIVE-----KPDN------------PNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLT  205 (248)
T ss_dssp             GGGGSEEEEEETTSE-EEEEEE-----SCSS------------HSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHH
T ss_pred             ccccceeeeecccee-EEEEec-----cCcc------------cccceeccCceEEEcchHHHHHhhhhhccchhhhHHH
Confidence            266899999998786 466664     4320            011579999999999999987743   2222333445


Q ss_pred             chhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCc--eE
Q 017849          236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK--YC  313 (365)
Q Consensus       236 d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--y~  313 (365)
                      |+++.++++.                                                      ..+.+|..  ++  ||
T Consensus       206 d~i~~~~~~~------------------------------------------------------~~~~~~~~--~~~~~w  229 (248)
T PF00483_consen  206 DAIPKLLEQG------------------------------------------------------KKVYAFIF--EGNAYW  229 (248)
T ss_dssp             HHHHHHHHTT------------------------------------------------------CEEEEEEH--SSEE-E
T ss_pred             HHHHHHHHcC------------------------------------------------------CceEEEEe--cCCeEE
Confidence            6777666553                                                      23466776  55  89


Q ss_pred             EEeCCHHHHHHHhHHHhh
Q 017849          314 VRLNSIQAFMDINRDVIG  331 (365)
Q Consensus       314 ~ri~~~~~Y~~~n~~~l~  331 (365)
                      ..|+|+.+|++||+++++
T Consensus       230 ~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  230 IDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             EETSSHHHHHHHHHHHHS
T ss_pred             EECCCHHHHHHHHHHHhc
Confidence            999999999999999975

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=100.00  E-value=1.8e-34  Score=276.82  Aligned_cols=239  Identities=15%  Similarity=0.253  Sum_probs=171.7

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhh--hcCCc-
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAA--YVDRL-   77 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~--~~~~~-   77 (365)
                      +|+|||||||+|+||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++.. .+.+.+|+.+.  |..+. 
T Consensus         2 ~~~avila~g~gtRL~PL-T~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~-~~~I~~~l~~~~~~~~~~~   79 (369)
T TIGR02092         2 KMSAIINLTESSKNLSPL-TKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE-RQSLFDHLGSGREWDLHRK   79 (369)
T ss_pred             cEEEEEECCCCCcccccc-ccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCc-HHHHHHHHhCCCCCCcccc
Confidence            589999999999999999 99999999999999 99999999999999999999999763 13788988641  11110 


Q ss_pred             --ce-EEEEcCC-C--CChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccC
Q 017849           78 --HV-EVATVPE-D--VGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEA  148 (365)
Q Consensus        78 --~v-~i~~~~~-~--~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~  148 (365)
                        +. .+..++. .  .|+++++..+++++.   +++|||++||++++.++.++++.|+++++++|+++.+++..     
T Consensus        80 ~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~-----  154 (369)
T TIGR02092        80 RDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPA-----  154 (369)
T ss_pred             cCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHH-----
Confidence              01 1223333 2  356667888888774   36799999999999999999999999999999988765310     


Q ss_pred             CCCCCccCCCCCCcc-eEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcC
Q 017849          149 GSSGAKDKTKKPGRY-NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK  227 (365)
Q Consensus       149 ~~~~~~~~~~~~~~~-~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~  227 (365)
                                .+..| +++..++++. +..+..    +++.              .....+++|+|+|++++|..++++.
T Consensus       155 ----------~~~~~g~vv~~~~~g~-v~~~~~----~~~~--------------~~~~~~~~Giyi~~~~~l~~~l~~~  205 (369)
T TIGR02092       155 ----------DASEYDTILRFDESGK-VKSIGQ----NLNP--------------EEEENISLDIYIVSTDLLIELLYEC  205 (369)
T ss_pred             ----------HccccCcEEEEcCCCC-EEeccc----cCCC--------------CCcceeeeeEEEEEHHHHHHHHHHH
Confidence                      13456 4556766664 444421    1110              1124578999999999886665432


Q ss_pred             c--cccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEE
Q 017849          228 D--KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY  305 (365)
Q Consensus       228 ~--~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
                      .  .....-.++++.+++.                                                       .++++|
T Consensus       206 ~~~~~~~~~~d~i~~~~~~-------------------------------------------------------~~v~~~  230 (369)
T TIGR02092       206 IQRGKLTSLEELIRENLKE-------------------------------------------------------LNINAY  230 (369)
T ss_pred             hhcCccccHHHHHHHHhcc-------------------------------------------------------CcEEEE
Confidence            1  1111122444443311                                                       246888


Q ss_pred             EecCCceEEEeCCHHHHHHHhHHHhhhh
Q 017849          306 IASNSKYCVRLNSIQAFMDINRDVIGEA  333 (365)
Q Consensus       306 ~~~~~~y~~ri~~~~~Y~~~n~~~l~~~  333 (365)
                      ..  +|||..|+|+.+|.++|+++|+++
T Consensus       231 ~~--~g~w~dIgt~~~l~~a~~~~l~~~  256 (369)
T TIGR02092       231 EY--TGYLANINSVKSYYKANMDLLDPQ  256 (369)
T ss_pred             ec--CCceeEcCCHHHHHHHHHHHhCCc
Confidence            77  789999999999999999999865

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=100.00  E-value=3.5e-34  Score=254.21  Aligned_cols=211  Identities=39%  Similarity=0.646  Sum_probs=171.9

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-cCCcce--
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRLHV--   79 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~~~~v--   79 (365)
                      |+|||||||.|+||+|+ |..+||+|+|++|+|||+|+|+++..+|+++|+|++++.. .+.+.+++.... ..+...  
T Consensus         1 ~~aVILAgG~g~R~~pl-t~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~-~~~i~~~l~~~~~~~~~~~~~   78 (214)
T cd04198           1 FQAVILAGGGGSRLYPL-TDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEE-QAEISTYLRSFPLNLKQKLDE   78 (214)
T ss_pred             CEEEEEeCCCCCcCCcc-ccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHH-HHHHHHHHHhcccccCcceeE
Confidence            68999999999999999 9999999999999999999999999999999999998543 245667765421 111122  


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (365)
                      .+.......|++++|+.+.+.+ .++|++++||++++.++..+++.|++.++.+|+++.+....+..    .+++++.+.
T Consensus        79 ~~~~~~~~~gt~~al~~~~~~i-~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~----~~~~~~~~~  153 (214)
T cd04198          79 VTIVLDEDMGTADSLRHIRKKI-KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQ----KGGKGKSKK  153 (214)
T ss_pred             EEecCCCCcChHHHHHHHHhhc-CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccc----cCCcccccC
Confidence            2223356799999999998887 57899999999999999999999999999999998875532110    111223344


Q ss_pred             CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHH
Q 017849          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL  220 (365)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl  220 (365)
                      ...+.++.+|+++++++++.+..+.++...+++++++++|++.+++++.|+|||+|++|||
T Consensus       154 ~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~  214 (214)
T cd04198         154 ADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL  214 (214)
T ss_pred             CCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence            5678899999988888999876677788889999999999999999999999999999975

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=100.00  E-value=3.4e-33  Score=266.36  Aligned_cols=233  Identities=20%  Similarity=0.317  Sum_probs=179.6

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~   83 (365)
                      +|||||||.|+||+|| |..+||||+|++|||||+|+|++|.++|+++|+|++++.. .+.+.+|+.+...-...+.++.
T Consensus         1 kaiIlAaG~gtRl~pl-t~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~i~~~~~~~~~~~~~~~~~~   78 (353)
T TIGR01208         1 KALILAAGKGTRLRPL-TFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVT-GEEIKEIVGEGERFGAKITYIV   78 (353)
T ss_pred             CEEEECCcCcCccCcc-ccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCC-HHHHHHHHhcccccCceEEEEE
Confidence            5899999999999999 9999999999999999999999999999999999998732 3578888864211112344555


Q ss_pred             cCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcc
Q 017849           84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY  163 (365)
Q Consensus        84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (365)
                      ++...|++++++.+++++.+++|++++||.+++.++.++++.|+++++++|+++.+.+                 ++..|
T Consensus        79 ~~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~-----------------~~~~~  141 (353)
T TIGR01208        79 QGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR-----------------DPTAF  141 (353)
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC-----------------ChhhC
Confidence            5667999999999999887678999999999999999999999999999998876532                 24568


Q ss_pred             eEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcc----ccccccchhh
Q 017849          164 NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQDVLP  239 (365)
Q Consensus       164 ~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~----~~s~~~d~lp  239 (365)
                      +++.+++++ ++..+.+     ++.             ...++++++|+|+|++.+++.+ ++...    ..++ .++++
T Consensus       142 g~~~~~~~~-~v~~~~e-----kp~-------------~~~~~~~~~Giy~~~~~l~~~l-~~~~~~~~~e~~l-~d~l~  200 (353)
T TIGR01208       142 GVAVLEDGK-RILKLVE-----KPK-------------EPPSNLAVVGLYMFRPLIFEAI-KNIKPSWRGELEI-TDAIQ  200 (353)
T ss_pred             eEEEEcCCC-cEEEEEE-----CCC-------------CCCccceEEEEEEECHHHHHHH-HhcCCCCCCcEEH-HHHHH
Confidence            888886544 4556653     321             1234788999999999877654 33211    0111 34555


Q ss_pred             HHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCH
Q 017849          240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI  319 (365)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~  319 (365)
                      .|++.+                                                      .++++|.+  +|||..|+|+
T Consensus       201 ~l~~~g------------------------------------------------------~~v~~~~~--~g~w~digt~  224 (353)
T TIGR01208       201 WLIEKG------------------------------------------------------YKVGGSKV--TGWWKDTGKP  224 (353)
T ss_pred             HHHHcC------------------------------------------------------CeEEEEEe--CcEEEeCCCH
Confidence            544321                                                      45788888  7899999999


Q ss_pred             HHHHHHhHHHhhh
Q 017849          320 QAFMDINRDVIGE  332 (365)
Q Consensus       320 ~~Y~~~n~~~l~~  332 (365)
                      .+|+++|+.++++
T Consensus       225 ~dl~~a~~~ll~~  237 (353)
T TIGR01208       225 EDLLDANRLILDE  237 (353)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999985

Alternate name: dTDP-D-glucose synthase

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.8e-33  Score=245.04  Aligned_cols=235  Identities=22%  Similarity=0.372  Sum_probs=187.2

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |+|||||||.||||+|+ |...||+|+||.+||||+|+|+.|..+||++|.|++++++. ..+.+++.+--.-...+++.
T Consensus         1 mKgiILAgG~GTRL~Pl-T~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~-~~~~~llGdgs~~gv~itY~   78 (286)
T COG1209           1 MKGVILAGGSGTRLRPL-TRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDK-PTFKELLGDGSDFGVDITYA   78 (286)
T ss_pred             CCcEEecCcCccccccc-cccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCch-hhhhhhhcCccccCcceEEE
Confidence            57999999999999999 99999999999999999999999999999999999997653 46666665410002457788


Q ss_pred             EcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCc
Q 017849           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (365)
                      .|+++.|.|+|+..+.+++.+++|+++.||.++..++.+++..+.++++++++++.++.                 +|++
T Consensus        79 ~Q~~p~GlA~Av~~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~-----------------dP~r  141 (286)
T COG1209          79 VQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD-----------------DPSR  141 (286)
T ss_pred             ecCCCCcHHHHHHHHHhhcCCCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC-----------------Cccc
Confidence            89999999999999999998899999999977766999999999988889999988875                 4889


Q ss_pred             ceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcC-cc-ccccc-cchhh
Q 017849          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-DK-FQSLK-QDVLP  239 (365)
Q Consensus       163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~-~~-~~s~~-~d~lp  239 (365)
                      ||++.+|++++ +..+.     |||.             .+.|++.-+|+|+|++.++..+ +.- ++ ...++ .|.+.
T Consensus       142 fGV~e~d~~~~-v~~l~-----EKP~-------------~P~SNlAvtGlY~~d~~Vf~~~-~~ikPS~RGElEITd~i~  201 (286)
T COG1209         142 YGVVEFDEDGK-VIGLE-----EKPK-------------EPKSNLAVTGLYFYDPSVFEAI-KQIKPSARGELEITDAID  201 (286)
T ss_pred             ceEEEEcCCCc-EEEeE-----ECCC-------------CCCCceeEEEEEEeChHHHHHH-HcCCCCCCCceEehHHHH
Confidence            99999999885 56777     4543             3568999999999999999644 442 21 11111 24444


Q ss_pred             HHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCH
Q 017849          240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI  319 (365)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~  319 (365)
                      .++.+.                                                      ....+...  .|.|..+.+.
T Consensus       202 ~~i~~G------------------------------------------------------~~~~~~~~--~G~WlDtGt~  225 (286)
T COG1209         202 LYIEKG------------------------------------------------------YLVVAILI--RGWWLDTGTP  225 (286)
T ss_pred             HHHHcC------------------------------------------------------cEEEEEEc--cceEEecCCh
Confidence            444332                                                      12233334  6799999999


Q ss_pred             HHHHHHhHHHhhh
Q 017849          320 QAFMDINRDVIGE  332 (365)
Q Consensus       320 ~~Y~~~n~~~l~~  332 (365)
                      .+|.+||+-++..
T Consensus       226 ~slleA~~~i~~~  238 (286)
T COG1209         226 ESLLEANNFVRTV  238 (286)
T ss_pred             hhHHHHHHHHHHH
Confidence            9999999999863

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=100.00  E-value=3.5e-33  Score=248.40  Aligned_cols=203  Identities=27%  Similarity=0.453  Sum_probs=162.2

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc--CC---c
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--DR---L   77 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~--~~---~   77 (365)
                      ++|||+|||.|+||+|| |..+||||+||+|||||+|+|++|.++|+++|+|++++.  .+.+.+|+++...  ..   .
T Consensus         1 ~~aiIla~G~g~Rl~pl-t~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~--~~~i~~~l~~~~~~~~~~~~~   77 (217)
T cd04197           1 LQAVVLADSFNRRFRPL-TKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSH--SDQIKEYIEKSKWSKPKSSLM   77 (217)
T ss_pred             CeEEEEcCCCccccccc-ccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCC--HHHHHHHHhhccccccccCcc
Confidence            58999999999999999 999999999999999999999999999999999999865  4589999986321  11   2


Q ss_pred             ceEEEEcCCCCChHHHHHHHH--HHcCCCcEEEEeCCcccCCChHHHHHHHHh-----cCCeEEEEEeeeccCCCccCCC
Q 017849           78 HVEVATVPEDVGTAGALRAIA--HHLTAKDVLVVSGDLVSDVPPGAVTAAHRR-----HDAVVTAMICSVPVSGLSEAGS  150 (365)
Q Consensus        78 ~v~i~~~~~~~gt~~al~~~~--~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~-----~~a~~t~l~~~~~~~~~~~~~~  150 (365)
                      .+.++.+++..|++++++...  ..+ .++|++++||++++.++.++++.|++     +++++|+++.+.+..+      
T Consensus        78 ~i~~~~~~~~~~~~~al~~~~~~~~~-~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~------  150 (217)
T cd04197          78 IVIIIMSEDCRSLGDALRDLDAKGLI-RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPH------  150 (217)
T ss_pred             eEEEEeCCCcCccchHHHHHhhcccc-CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCcc------
Confidence            355555566788999987653  334 57899999999999999999999987     4899999887654210      


Q ss_pred             CCCccCCCCCCcceEEEEcCCCcEEEEeeccccccc--cccccHHHHhhcCcceeccCcccceeeeeCHHHH
Q 017849          151 SGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL  220 (365)
Q Consensus       151 ~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek--~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl  220 (365)
                           +.+....++++.+|+++.+++.+.+++...+  ...++++++.+++++.+++++.|+|||+|+++||
T Consensus       151 -----~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl  217 (217)
T cd04197         151 -----RTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL  217 (217)
T ss_pred             -----ccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence                 0011234678888877444678887664332  3568999999999999999999999999999975

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PRK10122 GalU regulator GalF; Provisional

Probab=100.00  E-value=4.8e-32  Score=251.01  Aligned_cols=237  Identities=15%  Similarity=0.304  Sum_probs=178.6

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-c------
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V------   74 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~------   74 (365)
                      +|+|||+|||.||||+|| |..+||||+||+|||||+|+|++|.++|+++|+|++++.  .+.+.+|+...+ .      
T Consensus         3 ~mkavIlAaG~GtRl~Pl-T~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~l~~~~~~   79 (297)
T PRK10122          3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ   79 (297)
T ss_pred             ceEEEEECCcCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCC--hHHHHHHHhcchhHHHHHhh
Confidence            578999999999999999 999999999999999999999999999999999999876  357888885311 0      


Q ss_pred             ---------------CCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccC--------CChHHHHHHHHhcCC
Q 017849           75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA  131 (365)
Q Consensus        75 ---------------~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--------~~l~~~l~~h~~~~a  131 (365)
                                     -...+.++.++++.|+++|++.+++++.+++|+|+.||.+++        .|+.++++.|.+.++
T Consensus        80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~  159 (297)
T PRK10122         80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGR  159 (297)
T ss_pred             cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhCC
Confidence                           012356677778899999999999998667899999998775        589999999988887


Q ss_pred             eEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEc----CCCc--EEEEeeccccccccccccHHHHhhcCcceecc
Q 017849          132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQ--FLLHIATGAELEKDTRIRKSILRAVGQMDIRA  205 (365)
Q Consensus       132 ~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~--~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~  205 (365)
                      +++++. ....                .+..||++.+|    +++.  .+..+.+     |+..         +. ...+
T Consensus       160 ~~~~~~-~~~~----------------~~~~yGvv~~d~~~~~~g~v~~I~~~~E-----Kp~~---------~~-~~~s  207 (297)
T PRK10122        160 SQVLAK-RMPG----------------DLSEYSVIQTKEPLDREGKVSRIVEFIE-----KPDQ---------PQ-TLDS  207 (297)
T ss_pred             cEEEEE-ECCC----------------CCCCceEEEecCcccCCCCeeeEEEEEE-----CCCC---------cc-cCCc
Confidence            755443 2210                25688999986    3453  2445553     3311         00 1235


Q ss_pred             CcccceeeeeCHHHHHHHHhcCcccccccc----chhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCc
Q 017849          206 DLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ----DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  281 (365)
Q Consensus       206 ~l~~~giyi~s~~vl~~~~~~~~~~~s~~~----d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (365)
                      +++++|+|+|++++|..+.+ ... .+..+    |+++.+++.                                     
T Consensus       208 ~~~~~GiYi~~~~i~~~l~~-~~~-~~~~e~~ltd~i~~l~~~-------------------------------------  248 (297)
T PRK10122        208 DLMAVGRYVLSADIWPELER-TEP-GAWGRIQLTDAIAELAKK-------------------------------------  248 (297)
T ss_pred             cEEEEEEEEECHHHHHHHHh-CCC-CCCCeeeHHHHHHHHHhC-------------------------------------
Confidence            78999999999999987643 211 12222    555554422                                     


Q ss_pred             ccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHH-hhh
Q 017849          282 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-IGE  332 (365)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~-l~~  332 (365)
                                        .++++|.+  +|+|..|.++.+|.+++.++ |..
T Consensus       249 ------------------~~v~~~~~--~G~w~DiG~p~~~~~a~~~~~~~~  280 (297)
T PRK10122        249 ------------------QSVDAMLM--TGDSYDCGKKMGYMQAFVKYGLRN  280 (297)
T ss_pred             ------------------CCEEEEEe--CCEEEcCCCHHHHHHHHHHHHhcC
Confidence                              24688888  78999999999999999998 543

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=100.00  E-value=3.8e-32  Score=247.21  Aligned_cols=225  Identities=19%  Similarity=0.329  Sum_probs=177.9

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc--CCc----
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--DRL----   77 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~--~~~----   77 (365)
                      +|||||||.|+||+|+ |..+||+|+||+|||||+|+|++|.++|+++|+|++++.  .+.+.+|+.+...  ..+    
T Consensus         1 kavilaaG~gtRl~~~-t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~~~~   77 (254)
T TIGR02623         1 KAVILAGGLGTRISEE-THLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYK--GYVIKEYFANYFLHMSDVTFHM   77 (254)
T ss_pred             CEEEEcCccccccCcc-ccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCC--HHHHHHHHHhhhhcccCeeEEe
Confidence            5899999999999999 999999999999999999999999999999999999976  3578888865321  011    


Q ss_pred             ---------------ceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeecc
Q 017849           78 ---------------HVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV  142 (365)
Q Consensus        78 ---------------~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~  142 (365)
                                     .+.+..+.+..||+++++.+++++.+++|++++||++++.++.++++.|.+.++++|++...   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~---  154 (254)
T TIGR02623        78 ADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ---  154 (254)
T ss_pred             cccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec---
Confidence                           12233334568999999999999876789999999999999999999999999999876532   


Q ss_pred             CCCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHH
Q 017849          143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE  222 (365)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~  222 (365)
                                      ++..||++.+|+ + .+..+.+     |+.              ..+.++++|+|+|++++|. 
T Consensus       155 ----------------~~~~yG~v~~d~-~-~V~~~~E-----kp~--------------~~~~~i~~Giyi~~~~il~-  196 (254)
T TIGR02623       155 ----------------PPGRFGALDLEG-E-QVTSFQE-----KPL--------------GDGGWINGGFFVLNPSVLD-  196 (254)
T ss_pred             ----------------CCCcccEEEECC-C-eEEEEEe-----CCC--------------CCCCeEEEEEEEEcHHHHh-
Confidence                            145689998885 4 4567763     331              1246899999999999995 


Q ss_pred             HHhcCccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEE
Q 017849          223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC  302 (365)
Q Consensus       223 ~~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (365)
                      ++++..  .++..|+++.++++                                                       .++
T Consensus       197 ~l~~~~--~~~~~d~i~~l~~~-------------------------------------------------------~~v  219 (254)
T TIGR02623       197 LIDGDA--TVWEQEPLETLAQR-------------------------------------------------------GEL  219 (254)
T ss_pred             hccccC--chhhhhHHHHHHhC-------------------------------------------------------CCE
Confidence            545422  35667888887644                                                       235


Q ss_pred             EEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 017849          303 CVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (365)
Q Consensus       303 ~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~  331 (365)
                      ++|.+  +|||..|+|+.+|.+++...-.
T Consensus       220 ~~~~~--~g~w~dIgt~~~~~~~~~~~~~  246 (254)
T TIGR02623       220 SAYEH--SGFWQPMDTLRDKNYLEELWES  246 (254)
T ss_pred             EEEeC--CCEEecCCchHHHHHHHHHHHc
Confidence            88888  7899999999999999887743

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=100.00  E-value=7.8e-32  Score=243.46  Aligned_cols=233  Identities=20%  Similarity=0.301  Sum_probs=172.9

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |+|||||||.|+||+|+ |..+||+|+|++|+|||+|+|++|.++|+++|+|++++.. .+.+.+|+.+...-...+.+.
T Consensus         1 m~~iIlAaG~gtRl~pl-t~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~~l~~~~~~~~~i~~~   78 (240)
T cd02538           1 MKGIILAGGSGTRLYPL-TKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPED-LPLFKELLGDGSDLGIRITYA   78 (240)
T ss_pred             CeEEEEcCcCcccCCcc-ccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcch-HHHHHHHHhcccccCceEEEe
Confidence            57999999999999999 9999999999999999999999999999999999887543 346778886421001234444


Q ss_pred             EcCCCCChHHHHHHHHHHcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCC
Q 017849           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (365)
                      .++...|++++++.+.+++..+.+++++||. +.+.++.++++.|.++++++|+++...+                 .+.
T Consensus        79 ~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~  141 (240)
T cd02538          79 VQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN-----------------DPE  141 (240)
T ss_pred             eCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC-----------------chh
Confidence            4455789999999999988767799999995 5567899999999888888888876542                 245


Q ss_pred             cceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCc--ccccc-ccchh
Q 017849          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD--KFQSL-KQDVL  238 (365)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~--~~~s~-~~d~l  238 (365)
                      .|+++.+|++|+ +..+.+     |+.             ...++++++|+|+|++++|+.+ ++..  +...+ -.|++
T Consensus       142 ~~g~v~~d~~g~-v~~~~e-----kp~-------------~~~~~~~~~Giyi~~~~~l~~l-~~~~~~~~~~~~l~d~~  201 (240)
T cd02538         142 RYGVVEFDENGR-VLSIEE-----KPK-------------KPKSNYAVTGLYFYDNDVFEIA-KQLKPSARGELEITDVN  201 (240)
T ss_pred             cCceEEecCCCc-EEEEEE-----CCC-------------CCCCCeEEEEEEEECHHHHHHH-HhcCCCCCCeEEhHHHH
Confidence            789999998775 456663     321             1234688999999999998644 4221  11111 13666


Q ss_pred             hHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCC
Q 017849          239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS  318 (365)
Q Consensus       239 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~  318 (365)
                      +.++++.                                                       ++.+|.++.+|||..|+|
T Consensus       202 ~~l~~~g-------------------------------------------------------~~~~~~~~~~g~w~digt  226 (240)
T cd02538         202 NEYLEKG-------------------------------------------------------KLSVELLGRGFAWLDTGT  226 (240)
T ss_pred             HHHHHhC-------------------------------------------------------CeEEEEeCCCcEEEeCCC
Confidence            6655432                                                       123444422589999999


Q ss_pred             HHHHHHHhHHH
Q 017849          319 IQAFMDINRDV  329 (365)
Q Consensus       319 ~~~Y~~~n~~~  329 (365)
                      +.+|+++|+.+
T Consensus       227 ~~~~~~a~~~~  237 (240)
T cd02538         227 HESLLEASNFV  237 (240)
T ss_pred             HHHHHHHHHHH
Confidence            99999999865

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=100.00  E-value=1e-31  Score=247.77  Aligned_cols=185  Identities=22%  Similarity=0.376  Sum_probs=149.7

Q ss_pred             Cc-ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MD-FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~-~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |. |+|||||||.||||+|+ |..+||||+||+|||||+|+|++|..+|+++|+|++.+.. .+.+.+|+++...-...+
T Consensus         1 m~~~kaIILAgG~GtRL~Pl-T~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~-~~~~~~~l~~g~~~g~~i   78 (292)
T PRK15480          1 MKTRKGIILAGGSGTRLYPV-TMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGLNL   78 (292)
T ss_pred             CCceEEEEECCCcccccCcc-cCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCc-hHHHHHHHcCccccCcee
Confidence            54 89999999999999999 9999999999999999999999999999999998876443 346778876421002345


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (365)
                      .++.++.+.|+++|+..+.+++.+++++++.||. +++.++.++++.|.+.++++|+++..++                 
T Consensus        79 ~y~~q~~~~Gta~Al~~a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~-----------------  141 (292)
T PRK15480         79 QYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN-----------------  141 (292)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-----------------
Confidence            6677778899999999999998766788899995 4588999999999888888888876543                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~  223 (365)
                      ++++||++.+|+++++ ..+.     ||+.             ...++++++|+|+|++++++.+
T Consensus       142 ~p~~yGvv~~d~~g~v-~~i~-----EKP~-------------~p~s~~a~~GiY~~~~~v~~~~  187 (292)
T PRK15480        142 DPERYGVVEFDQNGTA-ISLE-----EKPL-------------QPKSNYAVTGLYFYDNDVVEMA  187 (292)
T ss_pred             CcccCcEEEECCCCcE-EEEE-----ECCC-------------CCCCCEEEEEEEEEChHHHHHH
Confidence            3678999999987764 5666     3432             2346899999999999998654

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=100.00  E-value=2.2e-31  Score=244.33  Aligned_cols=235  Identities=17%  Similarity=0.296  Sum_probs=173.2

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-c-------
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V-------   74 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~-------   74 (365)
                      |+|||||||.|+||+|+ |..+||||+||+|||||+|+|++|.++|+++|+|+++++.  +.+.+|+...+ .       
T Consensus         1 mkaiIlAaG~gtRl~pl-t~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~   77 (267)
T cd02541           1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGK--RAIEDHFDRSYELEETLEKK   77 (267)
T ss_pred             CeEEEEcCCCCccCCCc-ccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCch--HHHHHHhCCcHHHHHHHHhc
Confidence            57999999999999999 9999999999999999999999999999999999999764  47888885321 0       


Q ss_pred             -------------CCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEEe
Q 017849           75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC  138 (365)
Q Consensus        75 -------------~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~~  138 (365)
                                   ....+.++.++...|++++++.+++++..++|+|++||.++..   ++.++++.|++.++++ +++.
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~  156 (267)
T cd02541          78 GKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVE  156 (267)
T ss_pred             ccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEE
Confidence                         0123445556667999999999999987678999999976643   4999999998877764 4443


Q ss_pred             eeccCCCccCCCCCCccCCCCCCcceEEEEcCC---CcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeee
Q 017849          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT---KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF  215 (365)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~---~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~  215 (365)
                      ..+.+               .+..|+++.+|++   ...+..+.+++..+                ...+.++++|+|+|
T Consensus       157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----------------~~~~~~~~~Giyi~  205 (267)
T cd02541         157 EVPPE---------------DVSKYGIVKGEKIDGDVFKVKGLVEKPKPE----------------EAPSNLAIVGRYVL  205 (267)
T ss_pred             EcChh---------------cCccceEEEeecCCCCceEEeEEEECCCCC----------------CCCCceEEEEEEEc
Confidence            33211               2467899999862   22456666432111                12347889999999


Q ss_pred             CHHHHHHHHhcCccc---cccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCC
Q 017849          216 NRSVLQEVLDQKDKF---QSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNG  292 (365)
Q Consensus       216 s~~vl~~~~~~~~~~---~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (365)
                      ++++|..+.+...+.   ..+ .++++.+++.                                                
T Consensus       206 ~~~~~~~l~~~~~~~~~e~~~-~d~i~~l~~~------------------------------------------------  236 (267)
T cd02541         206 TPDIFDILENTKPGKGGEIQL-TDAIAKLLEE------------------------------------------------  236 (267)
T ss_pred             CHHHHHHHHhCCCCCCCcEEH-HHHHHHHHhc------------------------------------------------
Confidence            999997664311110   111 2445554432                                                


Q ss_pred             CCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHHh
Q 017849          293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI  330 (365)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l  330 (365)
                             .++++|.+  +|||..|+|+.+|+++||++.
T Consensus       237 -------~~v~~~~~--~g~w~digt~~~y~~a~~~~~  265 (267)
T cd02541         237 -------EPVYAYVF--EGKRYDCGNKLGYLKATVEFA  265 (267)
T ss_pred             -------CCEEEEEe--eeEEEeCCCHHHHHHHHHHHh
Confidence                   25688888  689999999999999999973

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=100.00  E-value=5e-31  Score=241.03  Aligned_cols=230  Identities=16%  Similarity=0.253  Sum_probs=169.4

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc--------
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--------   74 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~--------   74 (365)
                      |+|||||||.|+||+|| |..+||||+||+|||||+|+|++|.++|+++|+|++++..  +.+.+|++..+.        
T Consensus         1 m~avIlAaG~gtRl~pl-t~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~--~~i~~~~~~~~~~~~~~~~~   77 (260)
T TIGR01099         1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGK--RAIEDHFDTSYELEHQLEKR   77 (260)
T ss_pred             CeEEEEcccCcccCCCc-ccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcH--HHHHHHhcccHHHHHHHHhh
Confidence            57999999999999999 9999999999999999999999999999999999999763  578888863110        


Q ss_pred             -------------CCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEEe
Q 017849           75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC  138 (365)
Q Consensus        75 -------------~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~~  138 (365)
                                   ....+.+..+....|++++++.+++++..++|+|++||.++..   ++..+++.|++.++++ +++.
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~  156 (260)
T TIGR01099        78 GKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE  156 (260)
T ss_pred             hhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence                         0112344445567999999999999886678999999976643   7999999999888876 4443


Q ss_pred             eeccCCCccCCCCCCccCCCCCCcceEEEEcC---CCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeee
Q 017849          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP---TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF  215 (365)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~---~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~  215 (365)
                      ..+.+               .+..|+++.+|.   ++..+..+.+++..+                ...++++++|+|+|
T Consensus       157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----------------~~~~~~~~~Giyi~  205 (260)
T TIGR01099       157 EVPKE---------------EVSKYGVIDGEGVEEGLYEIKDMVEKPKPE----------------EAPSNLAIVGRYVL  205 (260)
T ss_pred             ECChh---------------hcccCceEEeccccCCceeEEEEEECCCCC----------------CCCCceEEEEEEEC
Confidence            33211               256789998873   323456776433111                11346899999999


Q ss_pred             CHHHHHHHHhcCcc---ccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCC
Q 017849          216 NRSVLQEVLDQKDK---FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNG  292 (365)
Q Consensus       216 s~~vl~~~~~~~~~---~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (365)
                      ++++|..+.+...+   ..++ .|+++.++++                                                
T Consensus       206 ~~~~~~~l~~~~~~~~~~~~l-~d~i~~l~~~------------------------------------------------  236 (260)
T TIGR01099       206 TPDIFDLLEETPPGAGGEIQL-TDALRKLLEK------------------------------------------------  236 (260)
T ss_pred             CHHHHHHHHhCCCCCCCceeH-HHHHHHHHhc------------------------------------------------
Confidence            99999877443211   1112 2455554432                                                


Q ss_pred             CCCCCceeEEEEEEecCCceEEEeCCHHHHHHH
Q 017849          293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDI  325 (365)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~  325 (365)
                             .++++|.+  +|||..|+|+.+|+++
T Consensus       237 -------~~v~~~~~--~g~w~digs~~~y~~a  260 (260)
T TIGR01099       237 -------ETVYAYKF--KGKRYDCGSKLGYLKA  260 (260)
T ss_pred             -------CCEEEEEc--ceEEEeCCCHHHHhhC
Confidence                   24688888  7899999999999974

Built to distinquish between the highly similar genes galU and galF

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=100.00  E-value=9.7e-31  Score=240.87  Aligned_cols=182  Identities=21%  Similarity=0.378  Sum_probs=146.3

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~   83 (365)
                      +|||||||.||||+|+ |..+||+|+||+|||||+|+|++|..+|+++|+|++.+.. .+.+.+++.+...-...+.++.
T Consensus         1 kaIILAgG~GtRL~pl-T~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~-~~~~~~~lg~g~~~g~~i~~~~   78 (286)
T TIGR01207         1 KGIILAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGVNLSYAV   78 (286)
T ss_pred             CEEEECCCCCccCCcc-cCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCc-HHHHHHHhccccccCceEEEEE
Confidence            5899999999999999 9999999999999999999999999999999998886443 3467777764110023455666


Q ss_pred             cCCCCChHHHHHHHHHHcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCc
Q 017849           84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (365)
Q Consensus        84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (365)
                      ++++.|+++|++.+.+++.+++++++.||. +++.++.++++.|.+.++++|+++..++                 ++.+
T Consensus        79 q~~~~Gta~al~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~-----------------~p~~  141 (286)
T TIGR01207        79 QPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS-----------------DPER  141 (286)
T ss_pred             ccCCCCHHHHHHHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc-----------------CHHH
Confidence            677899999999999999767889999995 5688999999999888888888876653                 2668


Q ss_pred             ceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~  223 (365)
                      ||++.+|++++ +..+.+     |+.             ...++++++|+|+|++++++.+
T Consensus       142 yGvv~~d~~g~-V~~i~E-----Kp~-------------~~~s~~~~~GiYi~~~~i~~~l  183 (286)
T TIGR01207       142 YGVVEFDSNGR-AISIEE-----KPA-------------QPKSNYAVTGLYFYDNRVVEIA  183 (286)
T ss_pred             CceEEECCCCe-EEEEEE-----CCC-------------CCCCCEEEEEEEEEchHHHHHH
Confidence            99999998775 456663     432             1245789999999999987644

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.98  E-value=2.5e-30  Score=232.98  Aligned_cols=232  Identities=20%  Similarity=0.342  Sum_probs=178.1

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |+|||+|||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|++++.  .+.+.+++.+...-...+.++
T Consensus         1 m~avIlAaG~g~Rl~pl-t~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~--~~~~~~~~~~~~~~~~~i~~~   77 (236)
T cd04189           1 MKGLILAGGKGTRLRPL-TYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPT--GEEIKEALGDGSRFGVRITYI   77 (236)
T ss_pred             CeEEEECCCcccccccc-ccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCC--HHHHHHHhcchhhcCCeEEEE
Confidence            68999999999999999 999999999999999999999999999999999999874  357888886521112345555


Q ss_pred             EcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCc
Q 017849           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (365)
                      .++...|++++++.+..++..+++++++||.+++.++.++++.|.+.++++++++.+.+                 .+..
T Consensus        78 ~~~~~~g~~~sl~~a~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~  140 (236)
T cd04189          78 LQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE-----------------DPRR  140 (236)
T ss_pred             ECCCCCChHHHHHHHHHhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC-----------------Cccc
Confidence            55667899999999999886578999999999999999999999988888888776532                 1456


Q ss_pred             ceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcc---ccccccchhh
Q 017849          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK---FQSLKQDVLP  239 (365)
Q Consensus       163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~---~~s~~~d~lp  239 (365)
                      |+++.+|+ + .+..+.+     |+.             ...+.+.++|+|+|++++|..+......   ..++ .++++
T Consensus       141 ~g~~~~d~-~-~v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~~  199 (236)
T cd04189         141 FGVAVVDD-G-RIVRLVE-----KPK-------------EPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAIQ  199 (236)
T ss_pred             ceEEEEcC-C-eEEEEEE-----CCC-------------CCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHHH
Confidence            78888875 4 4556553     321             1124688999999999999765321111   0111 35666


Q ss_pred             HHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCH
Q 017849          240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI  319 (365)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~  319 (365)
                      .+++.+                                                      .++++|.+  +|||..|+|+
T Consensus       200 ~~i~~g------------------------------------------------------~~v~~~~~--~~~~~~i~t~  223 (236)
T cd04189         200 WLIDRG------------------------------------------------------RRVGYSIV--TGWWKDTGTP  223 (236)
T ss_pred             HHHHcC------------------------------------------------------CcEEEEEc--CceEEeCCCH
Confidence            555332                                                      34678877  7899999999


Q ss_pred             HHHHHHhHHHhh
Q 017849          320 QAFMDINRDVIG  331 (365)
Q Consensus       320 ~~Y~~~n~~~l~  331 (365)
                      ..|.++|+.+|+
T Consensus       224 ~dl~~a~~~~l~  235 (236)
T cd04189         224 EDLLEANRLLLD  235 (236)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999986

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=99.98  E-value=5.4e-31  Score=233.99  Aligned_cols=206  Identities=32%  Similarity=0.504  Sum_probs=158.4

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh----cCCcc
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY----VDRLH   78 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~----~~~~~   78 (365)
                      |+|||+|||.|+||.|+ |...||+|+|++|+|||+|+|++|.++|+++|+|++++..  +.+.+++.+..    ....+
T Consensus         1 ~~avIlagg~g~rl~pl-t~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~--~~~~~~~~~~~~~~~~~~~~   77 (216)
T cd02507           1 FQAVVLADGFGSRFLPL-TSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHS--QAIIEHLLKSKWSSLSSKMI   77 (216)
T ss_pred             CeEEEEeCCCccccCcc-ccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcH--HHHHHHHHhcccccccCCce
Confidence            68999999999999999 9999999999999999999999999999999999999764  36667775421    11123


Q ss_pred             eEEEE--cCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHH--HHhcCCeEEEEEeeeccCCCccCCCCCCc
Q 017849           79 VEVAT--VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAA--HRRHDAVVTAMICSVPVSGLSEAGSSGAK  154 (365)
Q Consensus        79 v~i~~--~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~--h~~~~a~~t~l~~~~~~~~~~~~~~~~~~  154 (365)
                      +.+..  +....|++++++.+.+.+ .++|++++||++++.++..++++  +...++++|+.+.........        
T Consensus        78 v~~~~~~~~~~~Gta~~l~~~~~~i-~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~--------  148 (216)
T cd02507          78 VDVITSDLCESAGDALRLRDIRGLI-RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVST--------  148 (216)
T ss_pred             EEEEEccCCCCCccHHHHHHHhhcC-CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCc--------
Confidence            33333  245799999999999888 57899999999999999999965  555566677666554321100        


Q ss_pred             cCCCCCCcceEEEEcCCC--cEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHH
Q 017849          155 DKTKKPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL  220 (365)
Q Consensus       155 ~~~~~~~~~~~v~~d~~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl  220 (365)
                      ...+....++++.+|+++  .+++++.++++..+...++.++++++|++.+++++.|+|||+|+++||
T Consensus       149 ~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl  216 (216)
T cd02507         149 EQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL  216 (216)
T ss_pred             cccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence            001235678999999986  344455544433344456999999999999999999999999999975

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.97  E-value=6.1e-30  Score=232.87  Aligned_cols=224  Identities=18%  Similarity=0.308  Sum_probs=172.4

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc--CCcce---
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--DRLHV---   79 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~--~~~~v---   79 (365)
                      |||||||.|+||+|+ |..+||||+||+|+|||+|+++++..+|+++|+|++++.  .+.+.+|+.+...  ..+.+   
T Consensus         1 aiilaaG~g~Rl~pl-t~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~~~~~   77 (253)
T cd02524           1 VVILAGGLGTRLSEE-TELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYK--GHVIKEYFLNYFLHNSDVTIDLG   77 (253)
T ss_pred             CEEEecCCccccCCc-cCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCC--HHHHHHHHHhhhhhcCceeEeec
Confidence            699999999999999 999999999999999999999999999999999999976  4588888875321  11111   


Q ss_pred             ----------------EEEEcCCCCChHHHHHHHHHHcCC-CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeecc
Q 017849           80 ----------------EVATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV  142 (365)
Q Consensus        80 ----------------~i~~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~  142 (365)
                                      .++......|++++++.+++++.. ++|++++||++++.++..+++.|...++++|+++..   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~---  154 (253)
T cd02524          78 TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH---  154 (253)
T ss_pred             ccceeeecccccccceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec---
Confidence                            111112246799999999999865 789999999999999999999999989999887542   


Q ss_pred             CCCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHH
Q 017849          143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE  222 (365)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~  222 (365)
                                      .+..|+++.+|+++++ ..+.+     |+.              ..+.++++|+|+|+++++..
T Consensus       155 ----------------~~~~~g~v~~d~~g~V-~~~~e-----kp~--------------~~~~~i~~Giyi~~~~l~~~  198 (253)
T cd02524         155 ----------------PPGRFGELDLDDDGQV-TSFTE-----KPQ--------------GDGGWINGGFFVLEPEVFDY  198 (253)
T ss_pred             ----------------CCCcccEEEECCCCCE-EEEEE-----CCC--------------CCCceEEEEEEEECHHHHHh
Confidence                            1346788999988764 56653     321              11357899999999999865


Q ss_pred             HHhcCccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEE
Q 017849          223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC  302 (365)
Q Consensus       223 ~~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (365)
                      + ...  ..++..|+++.|++.                                                       -++
T Consensus       199 l-~~~--~~~~~~d~l~~li~~-------------------------------------------------------~~v  220 (253)
T cd02524         199 I-DGD--DTVFEREPLERLAKD-------------------------------------------------------GEL  220 (253)
T ss_pred             h-ccc--cchhhHHHHHHHHhc-------------------------------------------------------CCE
Confidence            5 332  123335777766643                                                       135


Q ss_pred             EEEEecCCceEEEeCCHHHHHHHhHHHh
Q 017849          303 CVYIASNSKYCVRLNSIQAFMDINRDVI  330 (365)
Q Consensus       303 ~~~~~~~~~y~~ri~~~~~Y~~~n~~~l  330 (365)
                      ++|.+  +|||..|+|+.+|.+++..+-
T Consensus       221 ~~~~~--~g~w~~I~t~~~~~~~~~~~~  246 (253)
T cd02524         221 MAYKH--TGFWQCMDTLRDKQTLEELWN  246 (253)
T ss_pred             EEEec--CCEEEeCcCHHHHHHHHHHHH
Confidence            78887  689999999999999996663

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=99.97  E-value=8.7e-30  Score=236.35  Aligned_cols=231  Identities=13%  Similarity=0.242  Sum_probs=173.0

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh--c---C--
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--V---D--   75 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~--~---~--   75 (365)
                      |+|||+|||.|+||+|+ |..+||+|+||+|||+|+|+|++|.++|+++|+|++++..  +.+.+|+...+  .   +  
T Consensus         9 ~~aiIlaaG~g~Rl~~~-t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~l~~~   85 (302)
T PRK13389          9 KKAVIPVAGLGTRMLPA-TKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK--NSIENHFDTSFELEAMLEKR   85 (302)
T ss_pred             eEEEEECCcCCccCCCc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCH--HHHHHHHccchhhhhhhhhh
Confidence            67999999999999999 9999999999999999999999999999999999999763  57888886411  0   0  


Q ss_pred             ---------------CcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccC--------CChHHHHHHHHhcCCe
Q 017849           76 ---------------RLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDAV  132 (365)
Q Consensus        76 ---------------~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--------~~l~~~l~~h~~~~a~  132 (365)
                                     ...+.++.+.+..|+++|++.+.+++.+++|+|++||.+++        .++.++++.|++.+++
T Consensus        86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~  165 (302)
T PRK13389         86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS  165 (302)
T ss_pred             hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence                           11233444566799999999999888667899999997653        7999999999888876


Q ss_pred             EEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcC----CC--cEEEEeeccccccccccccHHHHhhcCcceeccC
Q 017849          133 VTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP----TK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRAD  206 (365)
Q Consensus       133 ~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~----~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~  206 (365)
                       |+++...+                 .+..||++.++.    .+  ..+..+.+++..+                ...++
T Consensus       166 -tl~~~~~~-----------------~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~----------------~~~s~  211 (302)
T PRK13389        166 -QIMVEPVA-----------------DVTAYGVVDCKGVELAPGESVPMVGVVEKPKAD----------------VAPSN  211 (302)
T ss_pred             -EEEEEEcc-----------------cCCcceEEEecCcccccCCcceEEEEEECCCCC----------------CCCcc
Confidence             55554432                 256789998874    11  2355666432211                12357


Q ss_pred             cccceeeeeCHHHHHHHHhcCcc----ccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcc
Q 017849          207 LMDAHMYAFNRSVLQEVLDQKDK----FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF  282 (365)
Q Consensus       207 l~~~giyi~s~~vl~~~~~~~~~----~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (365)
                      ++++|+|+|++++|. +++....    ...+ .|+++.++++                                      
T Consensus       212 ~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l-~d~i~~l~~~--------------------------------------  251 (302)
T PRK13389        212 LAIVGRYVLSADIWP-LLAKTPPGAGDEIQL-TDAIDMLIEK--------------------------------------  251 (302)
T ss_pred             EEEEEEEEECHHHHH-HHHhCCCCCCCeeeH-HHHHHHHHHc--------------------------------------
Confidence            899999999999995 4444221    0112 3555555432                                      


Q ss_pred             cccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 017849          283 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  329 (365)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~  329 (365)
                                       .++++|.+  +|||..|+++..|.+++++.
T Consensus       252 -----------------~~v~~~~~--~G~w~DIGtpe~~~~a~~~~  279 (302)
T PRK13389        252 -----------------ETVEAYHM--KGKSHDCGNKLGYMQAFVEY  279 (302)
T ss_pred             -----------------CCEEEEEe--eeEEEeCCCHHHHHHHHHHH
Confidence                             24688888  78999999999999999986

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.97  E-value=4.2e-30  Score=229.25  Aligned_cols=216  Identities=16%  Similarity=0.261  Sum_probs=167.1

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE-
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA-   82 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~-   82 (365)
                      +|||||||.|+||+|| |..+||||+|++|+|||+|+|++|.++|+++|+|++++.  .+.+.+|+.+.   .+++.+. 
T Consensus         1 kaiIlaaG~g~Rl~pl-t~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~---~~~~~i~~   74 (221)
T cd06422           1 KAMILAAGLGTRMRPL-TDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHL--ADQIEAHLGDS---RFGLRITI   74 (221)
T ss_pred             CEEEEcCCCCCccccc-cCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCC--HHHHHHHHhcc---cCCceEEE
Confidence            5899999999999999 999999999999999999999999999999999999865  35888888751   2334443 


Q ss_pred             -EcC-CCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHH--hcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849           83 -TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHR--RHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (365)
Q Consensus        83 -~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~--~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (365)
                       .+. +..|++++++.+++++.+++|++++||++++.++.++++.|.  +.++.+|+.....+                 
T Consensus        75 ~~~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  137 (221)
T cd06422          75 SDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP-----------------  137 (221)
T ss_pred             ecCCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC-----------------
Confidence             333 468999999999998866789999999999999999999998  45666776654322                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccchh
Q 017849          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL  238 (365)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~l  238 (365)
                      ....|+++.+|+++++ ..+.     +++                ..+++++|+|+|++++|..+.+.   ..++ .|++
T Consensus       138 ~~~~~g~v~~d~~~~v-~~~~-----~~~----------------~~~~~~~Giyi~~~~~l~~l~~~---~~~~-~d~~  191 (221)
T cd06422         138 GHNGVGDFSLDADGRL-RRGG-----GGA----------------VAPFTFTGIQILSPELFAGIPPG---KFSL-NPLW  191 (221)
T ss_pred             CCCCcceEEECCCCcE-eecc-----cCC----------------CCceEEEEEEEEcHHHHhhCCcC---cccH-HHHH
Confidence            2456788889887754 4543     222                12688999999999999766432   1122 3667


Q ss_pred             hHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCC
Q 017849          239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS  318 (365)
Q Consensus       239 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~  318 (365)
                      +.++++.                                                       ++++|.+  +|||..|+|
T Consensus       192 ~~l~~~~-------------------------------------------------------~~~~~~~--~g~w~di~t  214 (221)
T cd06422         192 DRAIAAG-------------------------------------------------------RLFGLVY--DGLWFDVGT  214 (221)
T ss_pred             HHHHHcC-------------------------------------------------------CeEEEec--CCEEEcCCC
Confidence            7665431                                                       3477776  789999999


Q ss_pred             HHHHHHH
Q 017849          319 IQAFMDI  325 (365)
Q Consensus       319 ~~~Y~~~  325 (365)
                      +.+|.++
T Consensus       215 ~~~~~~a  221 (221)
T cd06422         215 PERLLAA  221 (221)
T ss_pred             HHHHhhC
Confidence            9999874

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.97  E-value=1.5e-28  Score=219.07  Aligned_cols=222  Identities=27%  Similarity=0.451  Sum_probs=170.9

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~   84 (365)
                      |||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++|+|++++..  +.+.+++.....-...+.+...
T Consensus         1 aiIlaaG~g~R~~~~-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~--~~i~~~~~~~~~~~~~~~~~~~   77 (223)
T cd06915           1 AVILAGGLGTRLRSV-VKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLA--EQIEEYFGDGYRGGIRIYYVIE   77 (223)
T ss_pred             CEEecCCcccccCcc-cCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCH--HHHHHHHcCccccCceEEEEEC
Confidence            699999999999999 9999999999999999999999999999999999998653  4677777642100122334444


Q ss_pred             CCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcce
Q 017849           85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN  164 (365)
Q Consensus        85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (365)
                      ....|++++++.+++.+..++|++++||++++.++.++++.|++.++++++++.+.+                 .+..++
T Consensus        78 ~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~  140 (223)
T cd06915          78 PEPLGTGGAIKNALPKLPEDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP-----------------DASRYG  140 (223)
T ss_pred             CCCCcchHHHHHHHhhcCCCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECC-----------------CCCcce
Confidence            567999999999999886678999999998899999999999888888888776532                 134678


Q ss_pred             EEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccchhhHHHHh
Q 017849          165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS  244 (365)
Q Consensus       165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~lp~l~~~  244 (365)
                      ++.+|++++ +..+.+     ++.             ...+.++++|+|+|++++|..+...  . .++..++++.++++
T Consensus       141 ~v~~d~~~~-v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~l~~~~~~--~-~~~~~~~~~~l~~~  198 (223)
T cd06915         141 NVTVDGDGR-VIAFVE-----KGP-------------GAAPGLINGGVYLLRKEILAEIPAD--A-FSLEADVLPALVKR  198 (223)
T ss_pred             eEEECCCCe-EEEEEe-----CCC-------------CCCCCcEEEEEEEECHHHHhhCCcc--C-CChHHHHHHHHHhc
Confidence            888888765 456652     221             1135788999999999999765322  1 23445677665533


Q ss_pred             hhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHH
Q 017849          245 QLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMD  324 (365)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~  324 (365)
                      +                                                       ++++|++  +|+|..|+|+..|++
T Consensus       199 ~-------------------------------------------------------~v~~~~~--~~~~~dI~t~~dl~~  221 (223)
T cd06915         199 G-------------------------------------------------------RLYGFEV--DGYFIDIGIPEDYAR  221 (223)
T ss_pred             C-------------------------------------------------------cEEEEec--CCeEEecCCHHHHHh
Confidence            1                                                       4688888  689999999999998


Q ss_pred             H
Q 017849          325 I  325 (365)
Q Consensus       325 ~  325 (365)
                      +
T Consensus       222 a  222 (223)
T cd06915         222 A  222 (223)
T ss_pred             h
Confidence            7

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.97  E-value=1.6e-28  Score=218.12  Aligned_cols=198  Identities=29%  Similarity=0.495  Sum_probs=152.7

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~   84 (365)
                      |||||||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|++++.  .+.+.+++.+.......+.++.+
T Consensus         1 aiIlaaG~g~R~~~~-t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~i~~~~~   77 (217)
T cd04181           1 AVILAAGKGTRLRPL-TDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYL--GEQIEEYFGDGSKFGVNIEYVVQ   77 (217)
T ss_pred             CEEecCCcccccccc-ccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHcChhhcCceEEEEeC
Confidence            699999999999999 999999999999999999999999999999999999865  35778887652111123555555


Q ss_pred             CCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcce
Q 017849           85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN  164 (365)
Q Consensus        85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (365)
                      +...|++++++.+++++..++|++++||++++.++..+++.|+++++++|+++.+.+                 .+..|+
T Consensus        78 ~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~  140 (217)
T cd04181          78 EEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE-----------------DPSRYG  140 (217)
T ss_pred             CCCCccHHHHHHhhhhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC-----------------CCCcce
Confidence            567899999999999886678999999999999999999999999999998876542                 255789


Q ss_pred             EEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcc-ccccccchhhHHH
Q 017849          165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK-FQSLKQDVLPYLV  242 (365)
Q Consensus       165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~-~~s~~~d~lp~l~  242 (365)
                      ++.+|++++ +..+.+     ++.             .....++++|+|+|++++|+ ++++... ..++-.++++.++
T Consensus       141 ~v~~d~~~~-v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l~  199 (217)
T cd04181         141 VVELDDDGR-VTRFVE-----KPT-------------LPESNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLLI  199 (217)
T ss_pred             EEEEcCCCc-EEEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHHH
Confidence            999998765 456653     321             01247899999999999985 4454321 1223345555544

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.97  E-value=1.7e-28  Score=241.91  Aligned_cols=232  Identities=19%  Similarity=0.311  Sum_probs=172.6

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      ++.|||||||.|+||    ...+||+|+|++|+|||+|+|++|.++|++++++++++.  .+.+.+++.+.    ..+.+
T Consensus         3 ~~~avIlAaG~g~Rl----~~~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~--~~~i~~~~~~~----~~i~~   72 (459)
T PRK14355          3 NLAAIILAAGKGTRM----KSDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQ--AEKVREHFAGD----GDVSF   72 (459)
T ss_pred             cceEEEEcCCCCccc----CCCCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCC--HHHHHHHhccC----CceEE
Confidence            378999999999999    457899999999999999999999999999999999866  34677777541    24556


Q ss_pred             EEcCCCCChHHHHHHHHHHcCC--CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849           82 ATVPEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (365)
                      +.++...|++++++.+++++.+  ++|++++||.  +.+.+++.+++.|++.+++++++..+..                
T Consensus        73 ~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~----------------  136 (459)
T PRK14355         73 ALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE----------------  136 (459)
T ss_pred             EecCCCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC----------------
Confidence            6667779999999999998853  6799999996  5678899999999888888888765432                


Q ss_pred             CCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCc-----cccc
Q 017849          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-----KFQS  232 (365)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~-----~~~s  232 (365)
                       .+..|+.+.+|+++++ ..+.+     |+..-+.         ...++++++|+|+|++++|.+.++...     ...+
T Consensus       137 -~~~~~g~v~~d~~g~v-~~~~e-----k~~~~~~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~  200 (459)
T PRK14355        137 -NPFGYGRIVRDADGRV-LRIVE-----EKDATPE---------ERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYY  200 (459)
T ss_pred             -CCCcCCEEEEcCCCCE-EEEEE-----cCCCChh---------HhhccEEEEEEEEEeHHHHHHHHHHcCccccCCcee
Confidence             2456888888887764 56653     2110000         112468899999999997656554321     1111


Q ss_pred             cccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCce
Q 017849          233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY  312 (365)
Q Consensus       233 ~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  312 (365)
                      + .|+++.|++++                                                      .++++|.+  ++|
T Consensus       201 ~-~d~i~~l~~~g------------------------------------------------------~~v~~~~~--~~~  223 (459)
T PRK14355        201 L-TDIVAMAAAEG------------------------------------------------------LRCLAFPV--ADP  223 (459)
T ss_pred             H-HHHHHHHHHCC------------------------------------------------------CeEEEEEc--CCH
Confidence            2 35555555332                                                      46788888  566


Q ss_pred             --EEEeCCHHHHHHHhHHHhhh
Q 017849          313 --CVRLNSIQAFMDINRDVIGE  332 (365)
Q Consensus       313 --~~ri~~~~~Y~~~n~~~l~~  332 (365)
                        |..++|+.+|+++++.++..
T Consensus       224 ~~~~~i~~~~~~~~a~~~l~~~  245 (459)
T PRK14355        224 DEIMGVNDRAQLAEAARVLRRR  245 (459)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHH
Confidence              99999999999998866653

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.97  E-value=1.9e-28  Score=218.26  Aligned_cols=220  Identities=21%  Similarity=0.409  Sum_probs=167.6

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~   84 (365)
                      |||||||.|+||+|+ |..+||+|+|++|+|||+|+|++|..+|+++|+|++++.  .+.+.+|+.....-...+.++.+
T Consensus         1 ~vIlaaG~g~R~~pl-t~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~~~~~~~~i~~~~~   77 (220)
T cd06426           1 VVIMAGGKGTRLRPL-TENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYL--AEMIEDYFGDGSKFGVNISYVRE   77 (220)
T ss_pred             CEEecCCCccccCcc-cCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccC--HHHHHHHHCCccccCccEEEEEC
Confidence            689999999999999 999999999999999999999999999999999999865  34677777642100123444444


Q ss_pred             CCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcce
Q 017849           85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN  164 (365)
Q Consensus        85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (365)
                      +...|+++++..+.+.. .++|+|++||++++.++..+++.|+..++++++++....                 ....|+
T Consensus        78 ~~~~g~~~~l~~~~~~~-~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~g  139 (220)
T cd06426          78 DKPLGTAGALSLLPEKP-TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE-----------------VQVPYG  139 (220)
T ss_pred             CCCCcchHHHHHHHhhC-CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC-----------------CCCcce
Confidence            56789999998777655 578999999999999999999999988888888775432                 134578


Q ss_pred             EEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccchhhHHHHh
Q 017849          165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS  244 (365)
Q Consensus       165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~lp~l~~~  244 (365)
                      ++..|+ ++ +..+.     +++.               .+.++++|+|+|+++++..+ .+.. +.++ .++++.+++.
T Consensus       140 ~~~~d~-~~-v~~~~-----ek~~---------------~~~~~~~Giy~~~~~~~~~i-~~~~-~~~l-~~~~~~~i~~  194 (220)
T cd06426         140 VVETEG-GR-ITSIE-----EKPT---------------HSFLVNAGIYVLEPEVLDLI-PKNE-FFDM-PDLIEKLIKE  194 (220)
T ss_pred             EEEECC-CE-EEEEE-----ECCC---------------CCCeEEEEEEEEcHHHHhhc-CCCC-CcCH-HHHHHHHHHC
Confidence            888886 54 45665     2321               23678999999999998755 3322 2222 3566655543


Q ss_pred             hhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHH
Q 017849          245 QLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMD  324 (365)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~  324 (365)
                      +                                                      .++++|.+  +|+|..|+|+.+|.+
T Consensus       195 ~------------------------------------------------------~~i~~~~~--~~~w~~igt~~dl~~  218 (220)
T cd06426         195 G------------------------------------------------------KKVGVFPI--HEYWLDIGRPEDYEK  218 (220)
T ss_pred             C------------------------------------------------------CcEEEEEe--CCeEEeCCCHHHHHh
Confidence            2                                                      34688888  689999999999999


Q ss_pred             Hh
Q 017849          325 IN  326 (365)
Q Consensus       325 ~n  326 (365)
                      +|
T Consensus       219 a~  220 (220)
T cd06426         219 AN  220 (220)
T ss_pred             hC
Confidence            86

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.97  E-value=7.9e-29  Score=244.82  Aligned_cols=232  Identities=20%  Similarity=0.263  Sum_probs=171.4

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |+|+|||||||+|+||++    .+||+|+|++|||||+|+|++|..+|+++|+|++++.  .+.+.+++..     .++.
T Consensus         6 ~~~~avILAaG~gtRl~~----~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~--~~~i~~~~~~-----~~i~   74 (481)
T PRK14358          6 RPLDVVILAAGQGTRMKS----ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHG--AEQVEAALQG-----SGVA   74 (481)
T ss_pred             CCceEEEECCCCCCcCCC----CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhcc-----CCcE
Confidence            678999999999999954    5799999999999999999999999999999999875  3467777642     3567


Q ss_pred             EEEcCCCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849           81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (365)
                      ++.++.+.|++++++.+++++.  +++|++++||+  +.+.+++.+++.|++.++++|+++...+               
T Consensus        75 ~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~---------------  139 (481)
T PRK14358         75 FARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP---------------  139 (481)
T ss_pred             EecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC---------------
Confidence            7766677899999999988874  35699999995  6678899999999999999998876543               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHH---HHHHHhcCc-cccc
Q 017849          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV---LQEVLDQKD-KFQS  232 (365)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~v---l~~~~~~~~-~~~s  232 (365)
                        ++..||++.+|++++ +..+.++++....              ....+++++|+|+|++++   +..+..... +..+
T Consensus       140 --~~~~yG~v~~d~~g~-v~~~~Ek~~~~~~--------------~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~  202 (481)
T PRK14358        140 --DATGYGRIVRGADGA-VERIVEQKDATDA--------------EKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYY  202 (481)
T ss_pred             --CCCCceEEEECCCCC-EEEEEECCCCChh--------------HhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEE
Confidence              245699999998776 4566643211000              012356899999999665   332211111 1122


Q ss_pred             cccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCce
Q 017849          233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY  312 (365)
Q Consensus       233 ~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  312 (365)
                      + .|+++.++++.                                                      .++++|.+  ++|
T Consensus       203 l-~d~i~~~~~~g------------------------------------------------------~~i~~~~~--~~~  225 (481)
T PRK14358        203 L-TDLLGLYRAGG------------------------------------------------------AQVRAFKL--SDP  225 (481)
T ss_pred             H-HHHHHHHHHCC------------------------------------------------------CeEEEEec--CCH
Confidence            3 36666655432                                                      35677877  679


Q ss_pred             EEEeCCHHHHHHHhHH-Hhhh
Q 017849          313 CVRLNSIQAFMDINRD-VIGE  332 (365)
Q Consensus       313 ~~ri~~~~~Y~~~n~~-~l~~  332 (365)
                      +.-++....|+.++++ +|+.
T Consensus       226 ~~~i~~~~~~~l~~~~~~l~~  246 (481)
T PRK14358        226 DEVLGANDRAGLAQLEATLRR  246 (481)
T ss_pred             HHhcCCCCHHHHHHHHHHHHH
Confidence            9999999999999986 6653

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=3e-27  Score=218.19  Aligned_cols=202  Identities=26%  Similarity=0.374  Sum_probs=164.7

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |.+.+||||+|+||||    ....||-|.|++||||++|+++.+...+.+++++|+++.  ++.+++.+.+.    .++.
T Consensus         1 ~~~~~vILAAGkGTRM----kS~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~--ae~V~~~~~~~----~~v~   70 (460)
T COG1207           1 MSLSAVILAAGKGTRM----KSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHG--AEQVREALAER----DDVE   70 (460)
T ss_pred             CCceEEEEecCCCccc----cCCCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCC--HHHHHHHhccc----cCce
Confidence            7789999999999999    788999999999999999999999999999999999976  45777776542    2588


Q ss_pred             EEEcCCCCChHHHHHHHHHHcC-C--CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCcc
Q 017849           81 VATVPEDVGTAGALRAIAHHLT-A--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD  155 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~-~--~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~  155 (365)
                      ++.|.+++||++|+.++++++. .  +++||++||  +++...++.+++.|...++.+|+++...+              
T Consensus        71 ~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~--------------  136 (460)
T COG1207          71 FVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELD--------------  136 (460)
T ss_pred             EEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcC--------------
Confidence            9999999999999999999983 2  469999999  68888899999999999999999987654              


Q ss_pred             CCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcccccccc
Q 017849          156 KTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ  235 (365)
Q Consensus       156 ~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~  235 (365)
                         +|..||.+..+++|.+ ..+.|.    |+.+-.          +-.-..+++|+|+|....|..++..-.+-..-.+
T Consensus       137 ---dP~GYGRIvr~~~g~V-~~IVE~----KDA~~e----------ek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgE  198 (460)
T COG1207         137 ---DPTGYGRIVRDGNGEV-TAIVEE----KDASEE----------EKQIKEINTGIYAFDGAALLRALPKLSNNNAQGE  198 (460)
T ss_pred             ---CCCCcceEEEcCCCcE-EEEEEc----CCCCHH----------HhcCcEEeeeEEEEcHHHHHHHHHHhccccccCc
Confidence               3789999999988764 677652    322111          0112578999999999988888876544455567


Q ss_pred             chhhHHHHh
Q 017849          236 DVLPYLVRS  244 (365)
Q Consensus       236 d~lp~l~~~  244 (365)
                      .+|+.++.-
T Consensus       199 YYLTDvI~i  207 (460)
T COG1207         199 YYLTDVIAI  207 (460)
T ss_pred             EeHHHHHHH
Confidence            888887755

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.96  E-value=6.2e-27  Score=231.98  Aligned_cols=234  Identities=23%  Similarity=0.297  Sum_probs=169.8

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      .+.|||||||.|+||+|    .+||+|+|++|||||+|+|++|.++|+++++|++++..  +.+.+++...   ...+.+
T Consensus         4 ~~~avILAaG~gtRm~~----~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~---~~~~~~   74 (482)
T PRK14352          4 PTAVIVLAAGAGTRMRS----DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDR--ERVAPAVAEL---APEVDI   74 (482)
T ss_pred             CceEEEEcCCCCCcCCC----CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCH--HHHHHHhhcc---CCccEE
Confidence            35799999999999953    58999999999999999999999999999999998653  4677776542   123455


Q ss_pred             EEcCCCCChHHHHHHHHHHcCC---CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849           82 ATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~---~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (365)
                      +.++...|++++++.+++++..   ++|++++||.  +...++..+++.|++.+++++++.....               
T Consensus        75 ~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~---------------  139 (482)
T PRK14352         75 AVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD---------------  139 (482)
T ss_pred             EeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC---------------
Confidence            5666778999999999988753   5699999995  5567899999999888888877654332               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcc-----cc
Q 017849          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK-----FQ  231 (365)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~-----~~  231 (365)
                        .+..|+.+..+++++ +..+.++++...     .         +...+++++|+|+|++++|..++++...     ..
T Consensus       140 --~p~~yg~~~~~~~g~-V~~~~EKp~~~~-----~---------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~  202 (482)
T PRK14352        140 --DPTGYGRILRDQDGE-VTAIVEQKDATP-----S---------QRAIREVNSGVYAFDAAVLRSALARLSSDNAQGEL  202 (482)
T ss_pred             --CCCCCCEEEECCCCC-EEEEEECCCCCH-----H---------HhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence              255788888887776 456664322100     0         1123578999999999999776543211     11


Q ss_pred             ccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCc
Q 017849          232 SLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK  311 (365)
Q Consensus       232 s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
                      .+ .|+++.+++.+                                                      .++++|.+  +|
T Consensus       203 ~l-~d~i~~l~~~g------------------------------------------------------~~V~~~~~--~g  225 (482)
T PRK14352        203 YL-TDVLAIAREAG------------------------------------------------------HRVGAHHA--DD  225 (482)
T ss_pred             eH-HHHHHHHHHCC------------------------------------------------------CeEEEEec--CC
Confidence            11 35555554332                                                      35688877  78


Q ss_pred             eEEEeCCHHHH------HHHhHHHhhhh
Q 017849          312 YCVRLNSIQAF------MDINRDVIGEA  333 (365)
Q Consensus       312 y~~ri~~~~~Y------~~~n~~~l~~~  333 (365)
                      ||..+.....|      ..+|+++|+.+
T Consensus       226 ~w~~~g~~~~~~~~~a~~~~~~~~~~~~  253 (482)
T PRK14352        226 SAEVAGVNDRVQLAALGAELNRRIVEAW  253 (482)
T ss_pred             cceEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999877666      66788888764

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.95  E-value=1.6e-26  Score=227.68  Aligned_cols=197  Identities=16%  Similarity=0.257  Sum_probs=141.7

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |.|.|||||||.|+||+    ..+||+|+|++|||||+|++++|..+|++++++++++.  .+.+.+++..     ..+.
T Consensus         4 ~~~~aiIlAaG~gtRl~----~~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~--~~~i~~~~~~-----~~~~   72 (456)
T PRK09451          4 SAMSVVILAAGKGTRMY----SDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHG--GDLLKQTLAD-----EPLN   72 (456)
T ss_pred             CCceEEEEcCCCCCcCC----CCCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhhcc-----CCcE
Confidence            46899999999999995    46899999999999999999999999999999999865  3467776642     2456


Q ss_pred             EEEcCCCCChHHHHHHHHHHcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849           81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (365)
                      ++.++...|++++++.+++++. .++|++++||.  +.+.++..+++.|++.+  +++++.+.+                
T Consensus        73 ~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~----------------  134 (456)
T PRK09451         73 WVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLD----------------  134 (456)
T ss_pred             EEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcC----------------
Confidence            6666777999999999988875 35799999996  66788999998886544  334443321                


Q ss_pred             CCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcc-----ccc
Q 017849          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK-----FQS  232 (365)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~-----~~s  232 (365)
                       ++..|+++.. ++++ +..+.+++.....              ...++++++|+|+|++++|.+++++...     ...
T Consensus       135 -~~~~yG~v~~-~~g~-V~~~~EKp~~~~~--------------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~  197 (456)
T PRK09451        135 -NPTGYGRITR-ENGK-VVGIVEQKDATDE--------------QRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYY  197 (456)
T ss_pred             -CCCCceEEEe-cCCe-EEEEEECCCCChH--------------HhhccEEEEEEEEEEHHHHHHHHHhcCCccccCcee
Confidence             2456888744 4554 5677643321000              1124678999999999999776654221     112


Q ss_pred             cccchhhHHHHh
Q 017849          233 LKQDVLPYLVRS  244 (365)
Q Consensus       233 ~~~d~lp~l~~~  244 (365)
                      + .|+++.++++
T Consensus       198 l-~d~i~~~i~~  208 (456)
T PRK09451        198 I-TDIIALAHQE  208 (456)
T ss_pred             H-HHHHHHHHHC
Confidence            2 3666666544

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.94  E-value=1.4e-25  Score=220.60  Aligned_cols=176  Identities=22%  Similarity=0.399  Sum_probs=134.2

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |+|||||||.|+||    ...+||+|+|++|||||+|+|++|.+.+ ++++|++++..  +.+.+++..      ++.++
T Consensus         1 m~avIlA~G~gtRl----~~~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~--~~i~~~~~~------~~~~~   67 (448)
T PRK14357          1 MRALVLAAGKGTRM----KSKIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEA--ELVKKLLPE------WVKIF   67 (448)
T ss_pred             CeEEEECCCCCccC----CCCCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCH--HHHHHhccc------ccEEE
Confidence            57999999999999    4578999999999999999999999875 88999988653  466666542      34555


Q ss_pred             EcCCCCChHHHHHHHHHHcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849           83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (365)
                      .++...|++++++.+++++. .++|++++||.  +.+.++..+++.|+++++++|+++.+..                 .
T Consensus        68 ~~~~~~g~~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~-----------------~  130 (448)
T PRK14357         68 LQEEQLGTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE-----------------D  130 (448)
T ss_pred             ecCCCCChHHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC-----------------C
Confidence            56677899999999999885 46799999995  6678899999999988999998876543                 2


Q ss_pred             CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                      +..|+++.++ +++ + .+.+     ++. .+..        ....+++++|+|+|++++|.++++
T Consensus       131 ~~~~g~v~~d-~g~-v-~~~e-----~~~-~~~~--------~~~~~~~~~GiYv~~~~~l~~~~~  179 (448)
T PRK14357        131 PTGYGRIIRD-GGK-Y-RIVE-----DKD-APEE--------EKKIKEINTGIYVFSGDFLLEVLP  179 (448)
T ss_pred             CCCcEEEEEc-CCe-E-EEEE-----CCC-CChH--------HhcCcEEEeEEEEEEHHHHHHHHH
Confidence            5578888777 454 3 3332     211 0000        011357899999999999877654

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.94  E-value=7.2e-25  Score=196.77  Aligned_cols=178  Identities=18%  Similarity=0.252  Sum_probs=132.8

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc-CCcceEEE-
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DRLHVEVA-   82 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~~~v~i~-   82 (365)
                      +||||||.|+||+|+ |..+||||+|++|+|||+|+|++|..+|+++++|+++...   ...+++...+. ...++.+. 
T Consensus         1 ~iIlAaG~g~Rl~pl-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~---~~~~~~~~~~~~~~~~~~i~~   76 (231)
T cd04183           1 IIIPMAGLGSRFKKA-GYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEH---NTKFHLDESLKLLAPNATVVE   76 (231)
T ss_pred             CEEECCcCCcccccc-CCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHH---hhhhhHHHHHHHhCCCCEEEE
Confidence            489999999999999 9999999999999999999999999999999999986331   11222222110 11233333 


Q ss_pred             EcCCCCChHHHHHHHHHHcC-CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCC
Q 017849           83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (365)
                      .+....|+++++..++..+. +++|++++||++++.++..++..|.+.+++.++++....                  ..
T Consensus        77 ~~~~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~  138 (231)
T cd04183          77 LDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS------------------HP  138 (231)
T ss_pred             eCCCCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC------------------CC
Confidence            34567999999999998885 478999999999999999999988877777776654321                  34


Q ss_pred             cceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHH-HHHHHHh
Q 017849          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS-VLQEVLD  225 (365)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~-vl~~~~~  225 (365)
                      .|+++.+|+++++ ..+.+     |+               ..+.++++|+|+|+++ .|...++
T Consensus       139 ~~~~v~~d~~~~v-~~~~e-----k~---------------~~~~~~~~Giy~~~~~~~~~~~l~  182 (231)
T cd04183         139 RWSYVKLDENGRV-IETAE-----KE---------------PISDLATAGLYYFKSGSLFVEAAK  182 (231)
T ss_pred             CeEEEEECCCCCE-EEeEE-----cC---------------CCCCccEeEEEEECcHHHHHHHHH
Confidence            6888999887764 45542     21               1246789999999997 5544443

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.94  E-value=9.2e-26  Score=198.15  Aligned_cols=129  Identities=22%  Similarity=0.315  Sum_probs=106.9

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhh--hc-C--Ccc
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAA--YV-D--RLH   78 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~--~~-~--~~~   78 (365)
                      |||||||.|+||+|+ |..+||+|+|++|+ |||+|+++++..+|+++++|++++..  +.+.+++.+.  +. +  ..+
T Consensus         1 avILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~--~~i~~~~~~~~~~~~~~~~~~   77 (200)
T cd02508           1 AIILAGGEGTRLSPL-TKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKS--RSLNDHLGSGKEWDLDRKNGG   77 (200)
T ss_pred             CEEeCCCCCcccchh-hcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCCh--HHHHHHHhCCCcccCCCCCCC
Confidence            699999999999999 99999999999999 99999999999999999999999763  5788888641  11 0  112


Q ss_pred             eEEEE------cCCCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEE
Q 017849           79 VEVAT------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAM  136 (365)
Q Consensus        79 v~i~~------~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l  136 (365)
                      +.++.      ++...||+++++.+.+++.   .++|+|++||.+++.++.++++.|+++++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~  144 (200)
T cd02508          78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVV  144 (200)
T ss_pred             EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEE
Confidence            34443      2346999999999998874   3679999999999999999999998887777654

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.94  E-value=6.9e-25  Score=216.03  Aligned_cols=227  Identities=22%  Similarity=0.313  Sum_probs=161.7

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |+|||||||.|+||+|    .+||+|+|++|+|||+|++++|.++|+++++|++++.  .+.+.+++.++     ++.++
T Consensus         1 m~aiIlAaG~g~R~~~----~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~--~~~i~~~~~~~-----~i~~~   69 (451)
T TIGR01173         1 LSVVILAAGKGTRMKS----DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHG--AEQVRKALANR-----DVNWV   69 (451)
T ss_pred             CeEEEEcCCCCcccCC----CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhcCC-----CcEEE
Confidence            5799999999999953    6899999999999999999999999999999999865  34677777642     45566


Q ss_pred             EcCCCCChHHHHHHHHHHcCC-CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849           83 TVPEDVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (365)
                      .++...|++++++.+++++.. ++|++++||.  +.+.++..+++.|.+.  .+++++...+                 .
T Consensus        70 ~~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~-----------------~  130 (451)
T TIGR01173        70 LQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP-----------------D  130 (451)
T ss_pred             EcCCCCchHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC-----------------C
Confidence            566678999999999998853 5799999996  5567899999988764  3555544321                 2


Q ss_pred             CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccc-----cccc
Q 017849          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKF-----QSLK  234 (365)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~-----~s~~  234 (365)
                      +..|+.+..|+++++ ..+.+++...     +.         .....++++|+|+|++++|..++++....     .++ 
T Consensus       131 ~~~~g~v~~d~~g~v-~~~~ek~~~~-----~~---------~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~-  194 (451)
T TIGR01173       131 PTGYGRIIRENDGKV-TAIVEDKDAN-----AE---------QKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYL-  194 (451)
T ss_pred             CCCCCEEEEcCCCCE-EEEEEcCCCC-----hH---------HhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeH-
Confidence            445788888877764 5555321110     00         01135788999999999976665542110     111 


Q ss_pred             cchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCce--
Q 017849          235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY--  312 (365)
Q Consensus       235 ~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--  312 (365)
                      .++++.+++++                                                      .++++|.+  ++|  
T Consensus       195 ~~~~~~l~~~g------------------------------------------------------~~v~~~~~--~~~~~  218 (451)
T TIGR01173       195 TDVIALAVADG------------------------------------------------------ETVRAVQV--DDSDE  218 (451)
T ss_pred             HHHHHHHHHCC------------------------------------------------------CeEEEEEc--CChhh
Confidence            25555544332                                                      35678877  667  


Q ss_pred             EEEeCCHHHHHHHhHHHhh
Q 017849          313 CVRLNSIQAFMDINRDVIG  331 (365)
Q Consensus       313 ~~ri~~~~~Y~~~n~~~l~  331 (365)
                      +..+.++..|.+++..+..
T Consensus       219 ~~~i~t~~dl~~~~~~l~~  237 (451)
T TIGR01173       219 VLGVNDRLQLAQLERILQR  237 (451)
T ss_pred             eecCCCHHHHHHHHHHHHH
Confidence            8889999998888765553

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.94  E-value=8e-25  Score=215.93  Aligned_cols=181  Identities=21%  Similarity=0.352  Sum_probs=137.1

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |.++|||||||.|+||    ...+||+|+|++|||||+|+|++|.++|++++++++++..  +.+.+++..      .+.
T Consensus         1 m~~~avIlAaG~g~Rl----~~~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~--~~i~~~~~~------~~~   68 (458)
T PRK14354          1 MNRYAIILAAGKGTRM----KSKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGA--EEVKEVLGD------RSE   68 (458)
T ss_pred             CCceEEEEeCCCCccc----CCCCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCH--HHHHHHhcC------CcE
Confidence            8999999999999999    4578999999999999999999999999999999988653  466666643      244


Q ss_pred             EEEcCCCCChHHHHHHHHHHcCC--CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849           81 VATVPEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (365)
                      ++.++...|++++++.+++++..  ++++++.||.  +.+.++..+++.|++.++++|+++...+               
T Consensus        69 ~~~~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~---------------  133 (458)
T PRK14354         69 FALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE---------------  133 (458)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC---------------
Confidence            55556678999999999988853  5699999994  5677899999999888888887765432               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                        .+..|+++..|+++++ ..+.+++.    .  ...        .....++++|+|+|+++.|...++
T Consensus       134 --~~~~~g~v~~d~~~~V-~~~~ek~~----~--~~~--------~~~~~~~~~Giy~f~~~~l~~~l~  185 (458)
T PRK14354        134 --NPTGYGRIIRNENGEV-EKIVEQKD----A--TEE--------EKQIKEINTGTYCFDNKALFEALK  185 (458)
T ss_pred             --CCCCceEEEEcCCCCE-EEEEECCC----C--ChH--------HhcCcEEEEEEEEEEHHHHHHHHH
Confidence              2445788888877764 45543211    0  000        112367899999999986655544

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.94  E-value=3.9e-25  Score=198.29  Aligned_cols=176  Identities=19%  Similarity=0.252  Sum_probs=131.4

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~   84 (365)
                      |||||||.|+||+|+ |..+||+|+|++|+|||+|+|++|.++|+++|+|++++.  .+.+.+|+++.    .++.++..
T Consensus         1 aiIlAaG~g~Rl~~l-t~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~~~~~----~~~~~~~~   73 (229)
T cd02523           1 AIILAAGRGSRLRPL-TEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYK--KEQIEELLKKY----PNIKFVYN   73 (229)
T ss_pred             CEEEeccCccccchh-hCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccC--HHHHHHHHhcc----CCeEEEeC
Confidence            699999999999999 999999999999999999999999999999999999975  35788887642    35666665


Q ss_pred             CC--CCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCc
Q 017849           85 PE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (365)
Q Consensus        85 ~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (365)
                      +.  ..|+++++..+++++ .+++++++||++++.   ++++.|.+.++++|+++.+...  .             ....
T Consensus        74 ~~~~~~g~~~s~~~~~~~~-~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~  134 (229)
T cd02523          74 PDYAETNNIYSLYLARDFL-DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTK--E-------------WEDE  134 (229)
T ss_pred             cchhhhCcHHHHHHHHHHc-CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcc--c-------------cccc
Confidence            43  589999999999988 578999999998754   5677888888888887765211  0             1223


Q ss_pred             ceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                      +++...|+ ++ +..+.+     ++..            .....++++|+|+|+++++..+.+
T Consensus       135 ~~~~~~~~-~~-v~~~~~-----k~~~------------~~~~~~~~~Giy~~~~~~~~~l~~  178 (229)
T cd02523         135 YVKDLDDA-GV-LLGIIS-----KAKN------------LEEIQGEYVGISKFSPEDADRLAE  178 (229)
T ss_pred             ceeeecCc-cc-eEeecc-----cCCC------------cchhceEEEeEEEECHHHHHHHHH
Confidence            44333332 33 334432     2210            012367899999999999876643

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=1.7e-24  Score=213.46  Aligned_cols=180  Identities=21%  Similarity=0.279  Sum_probs=133.2

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +.|||||||.|+||    ...+||+|+|++|+|||+|++++|...++++++|++++.  .+.+.+++..     ..+.++
T Consensus         6 ~~aiILAaG~gtR~----~~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~-----~~~~~v   74 (456)
T PRK14356          6 TGALILAAGKGTRM----HSDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHR--ADMVRAAFPD-----EDARFV   74 (456)
T ss_pred             eeEEEEcCCCCccC----CCCCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhccc-----cCceEE
Confidence            67999999999999    567999999999999999999999999999999998865  3455555432     246677


Q ss_pred             EcCCCCChHHHHHHHHHHcC---CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849           83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (365)
                      .++...|++++++.+++++.   .+++++++||+  +...++..+++.|+  +++++++....+                
T Consensus        75 ~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~----------------  136 (456)
T PRK14356         75 LQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP----------------  136 (456)
T ss_pred             EcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC----------------
Confidence            76777999999999988875   36799999996  55677899998875  566777665433                


Q ss_pred             CCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                       ++..|+++.. ++|+ +..+.++++.....            ....++++++|+|+|++++|..+++.
T Consensus       137 -~~~~~g~v~~-~~g~-V~~~~ek~~~~~~~------------~~~~~~~~~~GiY~f~~~~l~~ll~~  190 (456)
T PRK14356        137 -DPGAYGRVVR-RNGH-VAAIVEAKDYDEAL------------HGPETGEVNAGIYYLRLDAVESLLPR  190 (456)
T ss_pred             -CCCCceEEEE-cCCe-EEEEEECCCCChHH------------hhhhcCeEEEEEEEEEHHHHHHHHHh
Confidence             2456888766 4554 45665422110000            01234688999999999998766543

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=7.1e-24  Score=207.58  Aligned_cols=230  Identities=19%  Similarity=0.293  Sum_probs=156.5

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |+++|||||||.|+||+    ..+||+|+|++|+|||+|+++.|..+ +++++|++++.  .+.+.+++.+.+   .++.
T Consensus         1 m~~~aiIlAaG~GtRl~----~~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~--~~~i~~~~~~~~---~~v~   70 (430)
T PRK14359          1 MKLSIIILAAGKGTRMK----SSLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQ--KERIKEAVLEYF---PGVI   70 (430)
T ss_pred             CCccEEEEcCCCCccCC----CCCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCC--HHHHHHHHHhcC---CceE
Confidence            88999999999999995    47899999999999999999999887 78899998866  357888876532   2466


Q ss_pred             EEEcCC--CCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (365)
Q Consensus        81 i~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (365)
                      ++.++.  ..|++++++.+..  ..++|++++||..+-  ....++.+.+.++++++.+.+.+                 
T Consensus        71 ~~~~~~~~~~gt~~al~~~~~--~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~-----------------  129 (430)
T PRK14359         71 FHTQDLENYPGTGGALMGIEP--KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLA-----------------  129 (430)
T ss_pred             EEEecCccCCCcHHHHhhccc--CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcC-----------------
Confidence            666543  4799999987432  257899999997331  22455556666777777765532                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcccc----ccc
Q 017849          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ----SLK  234 (365)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~----s~~  234 (365)
                      ++..|+.+..+ +++ +..+.+++...+.              ....++.++|+|+|++++|..+........    ..-
T Consensus       130 ~~~~~g~v~~d-~g~-v~~i~e~~~~~~~--------------~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l  193 (430)
T PRK14359        130 DPKGYGRVVIE-NGQ-VKKIVEQKDANEE--------------ELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYL  193 (430)
T ss_pred             CCccCcEEEEc-CCe-EEEEEECCCCCcc--------------cccceEEEeEEEEEEHHHHHHHHHhcCcccccCceeh
Confidence            24457777665 454 4566532211000              112467899999999999987754321110    011


Q ss_pred             cchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEE
Q 017849          235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCV  314 (365)
Q Consensus       235 ~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~  314 (365)
                      .|+++.+++.                                                      ..++++|..+ .+||.
T Consensus       194 ~d~i~~l~~~------------------------------------------------------g~~v~~~~~~-~~~w~  218 (430)
T PRK14359        194 TDIIALAIEK------------------------------------------------------GETIKAVFVD-EENFM  218 (430)
T ss_pred             hhHHHHHHHc------------------------------------------------------CCeEEEEEcC-CCEEe
Confidence            2444443322                                                      1456778773 36999


Q ss_pred             EeCCHHHHHHHhHHHhhh
Q 017849          315 RLNSIQAFMDINRDVIGE  332 (365)
Q Consensus       315 ri~~~~~Y~~~n~~~l~~  332 (365)
                      .|+++..|.++++.+.++
T Consensus       219 dI~t~~dl~~a~~~l~~~  236 (430)
T PRK14359        219 GVNSKFELAKAEEIMQER  236 (430)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999998666543

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.93  E-value=6.5e-24  Score=186.34  Aligned_cols=237  Identities=14%  Similarity=0.263  Sum_probs=175.0

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh--------
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------   73 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~--------   73 (365)
                      -.+|||+|+|.||||.|. |...||-|+||-+||+|+|+++.+..+|++++++|++...+  .+++|+...+        
T Consensus         4 irKAViPaAGlGTRfLPA-TKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~--~IeDhFD~s~ELE~~L~~   80 (291)
T COG1210           4 IRKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKR--AIEDHFDTSYELENTLEK   80 (291)
T ss_pred             ccEEEEEccCcccccccc-cccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcc--hHHHhCcCcHHHHHHHHH
Confidence            358999999999999999 99999999999999999999999999999999999996643  7777764211        


Q ss_pred             -------------cCCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEE
Q 017849           74 -------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMI  137 (365)
Q Consensus        74 -------------~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~  137 (365)
                                   .....+.++.|.+++|.++|+.+|..++.+++|.|+.+|.+...   .+..|++.+.+.+..+..+ 
T Consensus        81 ~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v-  159 (291)
T COG1210          81 RGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGV-  159 (291)
T ss_pred             hCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEE-
Confidence                         11234667888999999999999999999999999999966543   4788999998888765443 


Q ss_pred             eeeccCCCccCCCCCCccCCCCCCcceEEEE----cCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceee
Q 017849          138 CSVPVSGLSEAGSSGAKDKTKKPGRYNIIGM----DPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMY  213 (365)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giy  213 (365)
                      .+++.+               +...||++..    +.+-..+..+.++|..+                +.+|++.-.|-|
T Consensus       160 ~ev~~e---------------~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~----------------~APSnlai~GRY  208 (291)
T COG1210         160 EEVPPE---------------DVSKYGVIDPGEPVEKGVYKVKGMVEKPKPE----------------EAPSNLAIVGRY  208 (291)
T ss_pred             EECCHH---------------HCcccceEecCccccCCeEEEEEEEECCCCC----------------CCCcceeeeeee
Confidence            344321               3668999872    22212345565433211                356899999999


Q ss_pred             eeCHHHHHHHHhcC-ccc-cccc-cchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCC
Q 017849          214 AFNRSVLQEVLDQK-DKF-QSLK-QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGP  290 (365)
Q Consensus       214 i~s~~vl~~~~~~~-~~~-~s~~-~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (365)
                      ++++++|+.+ ++. .+. ..+. .|-+..|++.                                              
T Consensus       209 il~p~IFd~L-~~~~~G~ggEiQLTDai~~L~~~----------------------------------------------  241 (291)
T COG1210         209 VLTPEIFDIL-EETKPGAGGEIQLTDAIKKLLKK----------------------------------------------  241 (291)
T ss_pred             ecCHHHHHHH-hhCCCCCCCEeeHHHHHHHHHhh----------------------------------------------
Confidence            9999999755 442 111 1111 2333333322                                              


Q ss_pred             CCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 017849          291 NGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (365)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~  331 (365)
                               -.++||.+  +|=.-.+.+...|.++|.++.-
T Consensus       242 ---------~~v~a~~~--~GkryD~G~k~Gyi~a~v~~~l  271 (291)
T COG1210         242 ---------EPVLAYVF--EGKRYDCGSKLGYIKANVEFAL  271 (291)
T ss_pred             ---------CcEEEEEe--cccEEccCCcccHHHHHHHHHh
Confidence                     24688988  6777789999999999998854

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=3.7e-24  Score=210.76  Aligned_cols=182  Identities=24%  Similarity=0.365  Sum_probs=140.2

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +.+||||||.|+||+    ..+||+|+|++|||||+|+|++|.++|+.+++|++++..  +.+.+++...    .++.++
T Consensus         2 ~~~iIlAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~----~~i~~v   71 (450)
T PRK14360          2 LAVAILAAGKGTRMK----SSLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQA--EEVEQSLAHL----PGLEFV   71 (450)
T ss_pred             ceEEEEeCCCCccCC----CCCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCH--HHHHHHhccc----CCeEEE
Confidence            679999999999994    478999999999999999999999999999999998653  4677776531    246666


Q ss_pred             EcCCCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849           83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (365)
                      .++...|++++++.+++++.  ++++++++||.  +.+.++..+++.|++.+++++++.....                 
T Consensus        72 ~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~-----------------  134 (450)
T PRK14360         72 EQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP-----------------  134 (450)
T ss_pred             EeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC-----------------
Confidence            66667899999999988875  35799999996  6678899999999988888887655432                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                      ++..|+.+.+|+++++ ..+.+++...     +.         ...++++++|+|+|++++|.+++++
T Consensus       135 ~~~~~g~~~~d~~g~v-~~~~ek~~~~-----~~---------~~~~~~~~~Giy~f~~~~l~~~~~~  187 (450)
T PRK14360        135 NPKGYGRVFCDGNNLV-EQIVEDRDCT-----PA---------QRQNNRINAGIYCFNWPALAEVLPK  187 (450)
T ss_pred             CCCCccEEEECCCCCE-EEEEECCCCC-----hh---------HhcCcEEEEEEEEEEHHHHHHHHhh
Confidence            2456888888887764 5665322110     00         1235789999999999988877654

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=1.3e-23  Score=206.71  Aligned_cols=183  Identities=23%  Similarity=0.272  Sum_probs=131.2

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||+    ..+||+|+|++|||||+|++++|..+|+++++|++++..  +.+.+++....   ..+.
T Consensus         4 ~~~~aiILAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~--~~i~~~~~~~~---~~~~   74 (446)
T PRK14353          4 RTCLAIILAAGEGTRMK----SSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGA--EAVAAAAAKIA---PDAE   74 (446)
T ss_pred             ccceEEEEcCCCCCccC----CCCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCH--HHHHHHhhccC---CCce
Confidence            45789999999999994    467999999999999999999999999999999998653  46777765421   1344


Q ss_pred             EEEcCCCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849           81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (365)
                      ++.++...|++++++.+++++.  .++|++++||.  +...++..+++.+ +.+++++++..+..               
T Consensus        75 ~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~---------------  138 (446)
T PRK14353         75 IFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAA---------------  138 (446)
T ss_pred             EEEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeC---------------
Confidence            4555667899999999988874  46799999996  4456688888744 45677777655432               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                        ++..|+++.. ++++ +..+.+++..+.     .         .....+.++|+|+|+++.|..++++
T Consensus       139 --~~~~~g~~~~-~~g~-v~~~~ek~~~~~-----~---------~~~~~~~~~Giy~~~~~~l~~~l~~  190 (446)
T PRK14353        139 --DPTGYGRLIV-KGGR-LVAIVEEKDASD-----E---------ERAITLCNSGVMAADGADALALLDR  190 (446)
T ss_pred             --CCCcceEEEE-CCCe-EEEEEECCCCCh-----H---------HhhceEEEEEEEEEEHHHHHHHHHh
Confidence              2456777776 3454 456653221100     0         0113578899999999877666554

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.92  E-value=4.3e-24  Score=196.17  Aligned_cols=192  Identities=21%  Similarity=0.235  Sum_probs=140.6

Q ss_pred             ceEEEEcCCCCCCCCCCCCC-CCCceeceeCC-cchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            3 FQVVVLAGGTSKKLVPLVSK-EVPKALLPVAN-RPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~-~~pK~llpv~g-kplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++||||||.|+||+|| |. .+||+|+|++| +|||++++++|...+ +++|+|++++.+. +.+.+++...   ..++
T Consensus         1 m~~vILAgG~GtRl~Pl-S~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~-~~v~~~l~~~---~~~~   75 (274)
T cd02509           1 IYPVILAGGSGTRLWPL-SRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYR-FLVREQLPEG---LPEE   75 (274)
T ss_pred             CEEEEEcccccccCCcC-CCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHH-HHHHHHHhhc---CCCc
Confidence            57999999999999999 75 79999999999 899999999999984 9999999986432 3455566431   1356


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC----CCcEEEEeCCcccC--CChHHHHHHHHh---cCCeEEEEEeeeccCCCccCCC
Q 017849           80 EVATVPEDVGTAGALRAIAHHLT----AKDVLVVSGDLVSD--VPPGAVTAAHRR---HDAVVTAMICSVPVSGLSEAGS  150 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~----~~~~lv~~~D~i~~--~~l~~~l~~h~~---~~a~~t~l~~~~~~~~~~~~~~  150 (365)
                      .++.++...||++++..+...+.    ++.++|++||+++.  .++.++++.+.+   .++.+|+.+....         
T Consensus        76 ~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~---------  146 (274)
T cd02509          76 NIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTR---------  146 (274)
T ss_pred             eEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecC---------
Confidence            77777888999999998877664    35689999997765  456667765543   5777887765432         


Q ss_pred             CCCccCCCCCCcceEEEEcCCC-c---EEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          151 SGAKDKTKKPGRYNIIGMDPTK-Q---FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       151 ~~~~~~~~~~~~~~~v~~d~~~-~---~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                              ....||++..+++. .   .+..+.++++.++.    ...+.      -...++++|+|+|++++|...+++
T Consensus       147 --------~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a----~~~~~------~g~~~wNsGiyi~~~~~l~~~l~~  208 (274)
T cd02509         147 --------PETGYGYIEAGEKLGGGVYRVKRFVEKPDLETA----KEYLE------SGNYLWNSGIFLFRAKTFLEELKK  208 (274)
T ss_pred             --------CCCCeEEEEeCCcCCCCceEEeEEEECcChHHH----HHHhh------cCCeEEECceeeeeHHHHHHHHHH
Confidence                    24689999998653 1   45677755443221    11111      123589999999999988777653

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.90  E-value=3e-22  Score=179.37  Aligned_cols=179  Identities=28%  Similarity=0.410  Sum_probs=135.1

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~   84 (365)
                      |||||||.|+||+    ..+||+|+|++|+|||+|++++|.++|+++|+|++++.  .+.+.+++..     .++.++..
T Consensus         1 aiIlaaG~g~R~~----~~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~--~~~i~~~~~~-----~~~~~~~~   69 (229)
T cd02540           1 AVILAAGKGTRMK----SDLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHG--AEQVKKALAN-----PNVEFVLQ   69 (229)
T ss_pred             CEEEeCCCCccCC----CCCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhCC-----CCcEEEEC
Confidence            6999999999995    36899999999999999999999999999999999865  3467776653     35666666


Q ss_pred             CCCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCC
Q 017849           85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (365)
Q Consensus        85 ~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (365)
                      +...|++++++.++..+.  .++|+++.||.  +...++..+++.|.+.++++++......                 .+
T Consensus        70 ~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-----------------~p  132 (229)
T cd02540          70 EEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE-----------------DP  132 (229)
T ss_pred             CCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC-----------------CC
Confidence            667899999999998886  46799999996  5567899999999887777777655432                 24


Q ss_pred             CcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                      ..|+.+..++++++ ..+.+++.    .. +.         .....++++|+|+|+++.|..+++.
T Consensus       133 ~~~~~~~~~~~~~v-~~~~ek~~----~~-~~---------~~~~~~~~~giy~~~~~~~~~~l~~  183 (229)
T cd02540         133 TGYGRIIRDGNGKV-LRIVEEKD----AT-EE---------EKAIREVNAGIYAFDAEFLFEALPK  183 (229)
T ss_pred             CCccEEEEcCCCCE-EEEEECCC----CC-hH---------HHhhceEEeEEEEEEHHHHHHHHHH
Confidence            56787777776764 45543111    10 00         0123678999999999877666654

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.87  E-value=4.2e-21  Score=188.52  Aligned_cols=192  Identities=20%  Similarity=0.214  Sum_probs=133.5

Q ss_pred             ceEEEEcCCCCCCCCCCCCCC-CCceeceeCC-cchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcc-e
Q 017849            3 FQVVVLAGGTSKKLVPLVSKE-VPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH-V   79 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~-~pK~llpv~g-kplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~-v   79 (365)
                      |.+||||||.||||+|| |.. +||+|+|++| +|||+++++.|...++++++|+++..+. ..+.+.+...   ... .
T Consensus         1 ~~~vILAgG~GtRl~Pl-S~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~-~~~~~~l~~~---~~~~~   75 (468)
T TIGR01479         1 IIPVILAGGSGTRLWPL-SRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHR-FIVAEQLREI---GKLAS   75 (468)
T ss_pred             CEEEEecCcccccCCcc-ccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHH-HHHHHHHHHc---CCCcc
Confidence            57999999999999999 665 8999999977 8999999999999999999999874432 2444455432   112 3


Q ss_pred             EEEEcCCCCChHHHHHHHHHHc----CCC-cEEEEeCCcccC--CChHHHHHHH---HhcCCeEEEEEeeeccCCCccCC
Q 017849           80 EVATVPEDVGTAGALRAIAHHL----TAK-DVLVVSGDLVSD--VPPGAVTAAH---RRHDAVVTAMICSVPVSGLSEAG  149 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i----~~~-~~lv~~~D~i~~--~~l~~~l~~h---~~~~a~~t~l~~~~~~~~~~~~~  149 (365)
                      .++.++..+||+.++..+...+    ..+ .++|++||++..  .+|.++++.+   .+.++.+|+......        
T Consensus        76 ~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~--------  147 (468)
T TIGR01479        76 NIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTH--------  147 (468)
T ss_pred             eEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCC--------
Confidence            4777788899999988765555    323 489999996543  3478887764   344666666654321        


Q ss_pred             CCCCccCCCCCCcceEEEEcCC----C-cEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHH
Q 017849          150 SSGAKDKTKKPGRYNIIGMDPT----K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (365)
Q Consensus       150 ~~~~~~~~~~~~~~~~v~~d~~----~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~  224 (365)
                               ....||++..++.    + ..+..+.|+++.+..    ...+      ...+.++|+|||+|++++|...+
T Consensus       148 ---------p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a----~~~l------~~g~~~wNsGif~~~~~~ll~~l  208 (468)
T TIGR01479       148 ---------PETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATA----QAYL------ESGDYYWNSGMFLFRASRYLAEL  208 (468)
T ss_pred             ---------CCCCceEEEeCCccCCCCceEEeEEEECCChHHH----HHHH------hcCCeEEEeeEEEEEHHHHHHHH
Confidence                     2468999998842    1 245677765443221    1111      11246899999999999887665


Q ss_pred             hc
Q 017849          225 DQ  226 (365)
Q Consensus       225 ~~  226 (365)
                      .+
T Consensus       209 ~~  210 (468)
T TIGR01479       209 KK  210 (468)
T ss_pred             HH
Confidence            43

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.85  E-value=1.1e-19  Score=164.67  Aligned_cols=186  Identities=18%  Similarity=0.253  Sum_probs=124.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.+||||+|.|+||    .   +|+|+|++|+|||+|+++.|..+|+++|+|++++    +.+.+++...     ++.
T Consensus         1 m~~~~iIlA~g~S~R~----~---~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~----~~i~~~~~~~-----~~~   64 (245)
T PRK05450          1 MKFLIIIPARYASTRL----P---GKPLADIGGKPMIVRVYERASKAGADRVVVATDD----ERIADAVEAF-----GGE   64 (245)
T ss_pred             CceEEEEecCCCCCCC----C---CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc----HHHHHHHHHc-----CCE
Confidence            8899999999999999    3   5999999999999999999999999999998863    3566666432     344


Q ss_pred             EEE--cCCCCChHHHHHHHHHHc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849           81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (365)
Q Consensus        81 i~~--~~~~~gt~~al~~~~~~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (365)
                      ++.  ++...|++.... +...+   ..+.+++++||+  +....+..+++.|+..++++++++....  ++..      
T Consensus        65 v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~--~~~~------  135 (245)
T PRK05450         65 VVMTSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIH--DAEE------  135 (245)
T ss_pred             EEECCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecC--CHHH------
Confidence            443  334567765443 33333   234588999996  5567899999998877666666554431  1111      


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeecccccc-ccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELE-KDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~e-k~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                         ...++.++++ +|++|++ ..+.+++..+ +..         .+.-...+++.++|||+|++++|..+.+
T Consensus       136 ---~~~~~~~~v~-~d~~g~v-~~~~e~~~~~~~~~---------~~~~~~~~~~~~~Giy~~~~~~l~~~~~  194 (245)
T PRK05450        136 ---AFNPNVVKVV-LDADGRA-LYFSRAPIPYGRDA---------FADSAPTPVYRHIGIYAYRRGFLRRFVS  194 (245)
T ss_pred             ---hcCcCCCEEE-eCCCCcE-EEecCCCCCCCCCc---------cccccCccccEEEEEEecCHHHHHHHHh
Confidence               1135566755 8877764 5665433111 000         0000123589999999999999987764

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.85  E-value=9.6e-20  Score=164.37  Aligned_cols=180  Identities=19%  Similarity=0.241  Sum_probs=122.9

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      +.|||||+|.|+||    .   ||+|+|++|||||+|++++|..+ |+++|+|++++    +.+.+++..+     ++.+
T Consensus         2 ~~~iIlA~g~s~R~----~---~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~----~~i~~~~~~~-----~~~~   65 (239)
T cd02517           2 VIVVIPARYASSRL----P---GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD----ERIADAVESF-----GGKV   65 (239)
T ss_pred             EEEEEecCCCCCCC----C---CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHHc-----CCEE
Confidence            57899999999999    3   69999999999999999999998 89999998863    3566666532     3445


Q ss_pred             EEc--CCCCChHHHHHHHHHHcCC--CcEEEEeCCc--ccCCChHHHHHHHHhc-CCeEEEEEeeeccCCCccCCCCCCc
Q 017849           82 ATV--PEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSGAK  154 (365)
Q Consensus        82 ~~~--~~~~gt~~al~~~~~~i~~--~~~lv~~~D~--i~~~~l~~~l~~h~~~-~a~~t~l~~~~~~~~~~~~~~~~~~  154 (365)
                      +..  ....|+++ +..+...+..  +.|++++||.  +...++..+++.|... ++++++++...+  ++...      
T Consensus        66 ~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~------  136 (239)
T cd02517          66 VMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPIS--DEEEL------  136 (239)
T ss_pred             EEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcC--CHHHc------
Confidence            443  23567775 5556555653  5699999994  6677899999988766 677887765542  11100      


Q ss_pred             cCCCCCCcceEEEEcCCCcEEEEeeccc--cccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          155 DKTKKPGRYNIIGMDPTKQFLLHIATGA--ELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~--~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                         .....++ |.+++++.+ ..+.+++  +.+++.             ...+.++++|+|+|++++|..+..
T Consensus       137 ---~~~~~~~-v~~~~~~~v-~~~~~~~~~~~~~~~-------------~~~~~~~~~Giy~~~~~~~~~~~~  191 (239)
T cd02517         137 ---FNPNVVK-VVLDKDGYA-LYFSRSPIPYPRDSS-------------EDFPYYKHIGIYAYRRDFLLRFAA  191 (239)
T ss_pred             ---cCCCCCE-EEECCCCCE-EEecCCCCCCCCCCC-------------CCCceeEEEEEEEECHHHHHHHHh
Confidence               0122334 456766654 4554321  101100             112468999999999999987754

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.82  E-value=1.9e-18  Score=155.77  Aligned_cols=181  Identities=21%  Similarity=0.291  Sum_probs=120.5

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.|||||+|.|+||    .   +|+|+|++|||||+|+++.+.++ ++++|+|++++    +.+.+++..+     ++
T Consensus         1 m~~~aiIlA~g~s~R~----~---~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~----~~i~~~~~~~-----~~   64 (238)
T PRK13368          1 MKVVVVIPARYGSSRL----P---GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD----QRIEDAVEAF-----GG   64 (238)
T ss_pred             CcEEEEEecCCCCCCC----C---CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh----HHHHHHHHHc-----CC
Confidence            7888999999999999    3   49999999999999999999998 79999999863    3566666542     33


Q ss_pred             EEEEc--CCCCChHHHHHHHHHHcCCCcEEEEeCC--cccCCChHHHHHHHHhcCC-eEEEEEeeeccCCCccCCCCCCc
Q 017849           80 EVATV--PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA-VVTAMICSVPVSGLSEAGSSGAK  154 (365)
Q Consensus        80 ~i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a-~~t~l~~~~~~~~~~~~~~~~~~  154 (365)
                      .++..  ....|++ .+..+...+..+.|+++.||  ++...++..+++.|...+. ++++++...+.  +..       
T Consensus        65 ~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~-------  134 (238)
T PRK13368         65 KVVMTSDDHLSGTD-RLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPIST--EEE-------  134 (238)
T ss_pred             eEEecCccCCCccH-HHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCC--HHH-------
Confidence            34433  2345666 46667666655679999999  5778889999999876543 55555543321  000       


Q ss_pred             cCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849          155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~  223 (365)
                        ...+..+++ .++++|++ ..+.+++   ++.  +.     .+  ...+.+.++|+|+|++++|..+
T Consensus       135 --~~~p~~~~~-~~~~~g~v-~~~~~~~---~~~--~~-----~~--~~~~~~~n~giy~~~~~~l~~~  187 (238)
T PRK13368        135 --FESPNVVKV-VVDKNGDA-LYFSRSP---IPS--RR-----DG--ESARYLKHVGIYAFRRDVLQQF  187 (238)
T ss_pred             --hcCcCCCEE-EECCCCCE-EEeeCCC---CCC--CC-----CC--CCCceeEEEEEEEeCHHHHHHH
Confidence              001333444 44555654 4554211   110  00     00  0113588999999999999865

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.77  E-value=1.1e-17  Score=150.50  Aligned_cols=193  Identities=24%  Similarity=0.259  Sum_probs=132.2

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCC-cchHHHHHHHHHh-CCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~g-kplI~~~L~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |.+||||||.|||||||+...+||+++++.| +.|++.+++++.. .+.++++|+|+..+. ..+.+.+.+.......- 
T Consensus         2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~-f~v~eql~e~~~~~~~~-   79 (333)
T COG0836           2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYR-FIVKEQLPEIDIENAAG-   79 (333)
T ss_pred             ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHH-HHHHHHHhhhhhccccc-
Confidence            6799999999999999988999999999955 8999999999987 668999999996543 34555555321111122 


Q ss_pred             EEEcCCCCChHHHHHHHHHHcCC----CcEEEEeCCcccCCC--hHHHHHHHH---hcCCeEEEEEeeeccCCCccCCCC
Q 017849           81 VATVPEDVGTAGALRAIAHHLTA----KDVLVVSGDLVSDVP--PGAVTAAHR---RHDAVVTAMICSVPVSGLSEAGSS  151 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~----~~~lv~~~D~i~~~~--l~~~l~~h~---~~~a~~t~l~~~~~~~~~~~~~~~  151 (365)
                      ++.++..+.|+.|+..+.-.+..    .-++|+++|++....  +.+.++...   +.+..+|+...+..          
T Consensus        80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~----------  149 (333)
T COG0836          80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTR----------  149 (333)
T ss_pred             eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCC----------
Confidence            77788889999998877443332    238999999765432  444444332   34566666543321          


Q ss_pred             CCccCCCCCCcceEEEEcC-----CCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHH
Q 017849          152 GAKDKTKKPGRYNIIGMDP-----TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (365)
Q Consensus       152 ~~~~~~~~~~~~~~v~~d~-----~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~  224 (365)
                             ..+.||++...+     ....+..|.|+|+.+..    ++.+.      -...++|+|+|+|+..++.+-+
T Consensus       150 -------PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA----~~yv~------sG~y~WNSGmF~Fra~~~l~e~  210 (333)
T COG0836         150 -------PETGYGYIETGESIAENGVYKVDRFVEKPDLETA----KKYVE------SGEYLWNSGMFLFRASVFLEEL  210 (333)
T ss_pred             -------CccCcceeecCcccccCCceEeeeeeeCCCHHHH----HHHHH------cCceEeeccceEEEHHHHHHHH
Confidence                   256899998755     24445667765554432    22222      1347999999999998875444

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.76  E-value=1.9e-17  Score=161.38  Aligned_cols=194  Identities=20%  Similarity=0.191  Sum_probs=130.7

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCC-CCceeceeCC-cchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcc
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKE-VPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~-~pK~llpv~g-kplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~   78 (365)
                      |.|.+||||||.|+||+|+ +.. +||+|+|++| +|||+++++++...++.+.+|+++..+ ...+.+.+... . ...
T Consensus         4 ~~~~~vIlaGG~GtRlwPl-S~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~-~~~v~~ql~~~-~-~~~   79 (478)
T PRK15460          4 SKLYPVVMAGGSGSRLWPL-SRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQH-RFIVAEQLRQL-N-KLT   79 (478)
T ss_pred             CceEEEEECCCCccccccC-CCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHH-HHHHHHHHHhc-C-Ccc
Confidence            6789999999999999999 655 7999999966 699999999999888888888888543 24555555431 1 012


Q ss_pred             eEEEEcCCCCChHHHHHHHHHHcC------CCcEEEEeCCcccCC--ChHHHHHHHH---hcCCeEEEEEeeeccCCCcc
Q 017849           79 VEVATVPEDVGTAGALRAIAHHLT------AKDVLVVSGDLVSDV--PPGAVTAAHR---RHDAVVTAMICSVPVSGLSE  147 (365)
Q Consensus        79 v~i~~~~~~~gt~~al~~~~~~i~------~~~~lv~~~D~i~~~--~l~~~l~~h~---~~~a~~t~l~~~~~~~~~~~  147 (365)
                      ..++.++..++|+.|+..+...+.      +.-++|+++|++...  .|.+.++...   +.+..+|+...+..      
T Consensus        80 ~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~------  153 (478)
T PRK15460         80 ENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL------  153 (478)
T ss_pred             ccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCC------
Confidence            367788888999988876644432      234889999976543  2444444332   23666665543321      


Q ss_pred             CCCCCCccCCCCCCcceEEEEcCC-------C-cEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHH
Q 017849          148 AGSSGAKDKTKKPGRYNIIGMDPT-------K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV  219 (365)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~v~~d~~-------~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~v  219 (365)
                                 ..+.||++..++.       + ..+..|.|+|+.+..    ..++.      -...++|+|||+|+.++
T Consensus       154 -----------PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA----~~yl~------~G~y~WNsGiF~~~a~~  212 (478)
T PRK15460        154 -----------PETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETA----QAYVA------SGEYYWNSGMFLFRAGR  212 (478)
T ss_pred             -----------CCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHH----HHHHH------cCCEEEecceeheeHHH
Confidence                       2568999987653       1 245677765554332    22222      12368999999999988


Q ss_pred             HHHHHh
Q 017849          220 LQEVLD  225 (365)
Q Consensus       220 l~~~~~  225 (365)
                      |..-++
T Consensus       213 ~l~~~~  218 (478)
T PRK15460        213 YLEELK  218 (478)
T ss_pred             HHHHHH
Confidence            765544

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.73  E-value=1e-16  Score=138.62  Aligned_cols=113  Identities=22%  Similarity=0.353  Sum_probs=89.7

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      -|.|||||||.|+||.|    +.||||+.++||++|+|++++|.++|++++++|+.... .+-+..++...   ++...+
T Consensus         3 ~~kavILAAG~GsRlg~----~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~-~~lve~~l~~~---~~~~~i   74 (239)
T COG1213           3 PMKAVILAAGFGSRLGP----DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYR-ADLVEEFLKKY---PFNAKI   74 (239)
T ss_pred             ceeEEEEecccccccCC----CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccch-HHHHHHHHhcC---CcceEE
Confidence            47899999999999954    79999999999999999999999999999999994222 45666666643   235667


Q ss_pred             EEcCC--CCChHHHHHHHHHHcCCCcEEEEeCCcccCCCh-HHHH
Q 017849           82 ATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPP-GAVT  123 (365)
Q Consensus        82 ~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l-~~~l  123 (365)
                      +..+.  ..+++.+|..+.+++. +.|+++.||+++...+ +.++
T Consensus        75 v~N~~y~ktN~~~Sl~~akd~~~-~~fii~~sD~vye~~~~e~l~  118 (239)
T COG1213          75 VINSDYEKTNTGYSLLLAKDYMD-GRFILVMSDHVYEPSILERLL  118 (239)
T ss_pred             EeCCCcccCCceeEEeeehhhhc-CcEEEEeCCEeecHHHHHHHH
Confidence            66544  3566899999999885 5699999999987653 4343

>PLN02917 CMP-KDO synthetase

Probab=99.69  E-value=4.9e-15  Score=136.98  Aligned_cols=200  Identities=13%  Similarity=0.127  Sum_probs=124.5

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCC-CeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNI-KDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.+||+|+|.|+||    .   +|+|++++|+|||+|+++.+..++. +.|+|.+.    .+.+.+++..     .++
T Consensus        46 ~~i~aIIpA~G~SsR~----~---~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~----~e~I~~~~~~-----~~v  109 (293)
T PLN02917         46 SRVVGIIPARFASSRF----E---GKPLVHILGKPMIQRTWERAKLATTLDHIVVATD----DERIAECCRG-----FGA  109 (293)
T ss_pred             CcEEEEEecCCCCCCC----C---CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECC----hHHHHHHHHH-----cCC
Confidence            6778999999999999    4   3999999999999999999998764 44444332    2466666643     234


Q ss_pred             EEEEc--CCCCChHHHHHHHHHHcC--CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849           80 EVATV--PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (365)
Q Consensus        80 ~i~~~--~~~~gt~~al~~~~~~i~--~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (365)
                      .++..  ....|++.+ ..+.+.+.  .+.++++.||  ++....+..+++.+.+. ++++++..-.+. ++.       
T Consensus       110 ~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~-~~~-------  179 (293)
T PLN02917        110 DVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL-KPE-------  179 (293)
T ss_pred             EEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeec-CHH-------
Confidence            45443  345677766 46767674  3569999999  67778899999988654 333332221111 111       


Q ss_pred             ccCCCCCCcceEEE--EcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCcccc
Q 017849          154 KDKTKKPGRYNIIG--MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ  231 (365)
Q Consensus       154 ~~~~~~~~~~~~v~--~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~  231 (365)
                           ++..|+.+.  .|++|+.+.+.......+++..-.          ...-.+.++|||.|+++.|..+ .+-..-.
T Consensus       180 -----~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~----------~~~i~~~n~Giy~f~~~~L~~l-~~l~~~n  243 (293)
T PLN02917        180 -----DASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDAKFLKIY-PELPPTP  243 (293)
T ss_pred             -----HhcCCCceEEEECCCCeEEEeecCcCCcCCCcccc----------cccceEEEEEEEEeCHHHHHHH-HcCCCCc
Confidence                 255677774  677776553332211112221000          0112578999999999999844 4332222


Q ss_pred             ccccchhhHHH
Q 017849          232 SLKQDVLPYLV  242 (365)
Q Consensus       232 s~~~d~lp~l~  242 (365)
                      .-+++.|..|+
T Consensus       244 ~e~e~yLtdl~  254 (293)
T PLN02917        244 LQLEEDLEQLK  254 (293)
T ss_pred             ccchhccHHHH
Confidence            33456666654

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=99.65  E-value=9.2e-16  Score=129.61  Aligned_cols=118  Identities=28%  Similarity=0.432  Sum_probs=95.6

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~   84 (365)
                      |||||||.|+||      +.||+|++++|+|||+|+++.+..+++++|+|++++.    .+..++.     +.++.++..
T Consensus         1 ~vILa~G~s~Rm------g~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~~----~~~~~~~-----~~~~~~v~~   65 (160)
T PF12804_consen    1 AVILAAGKSSRM------GGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGEE----EIYEYLE-----RYGIKVVVD   65 (160)
T ss_dssp             EEEEESSSCGGG------TSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEESTH----HHHHHHT-----TTTSEEEE-
T ss_pred             CEEECCcCcccC------CCCccceeECCccHHHHHHHHhhccCCceEEEecChH----HHHHHHh-----ccCceEEEe
Confidence            799999999999      3499999999999999999999999999999999852    4444443     235777765


Q ss_pred             C-CCCChHHHHHHHHHHc-CCCcEEEEeCCcc--cCCChHHHHHHHHhcCCeEEEEE
Q 017849           85 P-EDVGTAGALRAIAHHL-TAKDVLVVSGDLV--SDVPPGAVTAAHRRHDAVVTAMI  137 (365)
Q Consensus        85 ~-~~~gt~~al~~~~~~i-~~~~~lv~~~D~i--~~~~l~~~l~~h~~~~a~~t~l~  137 (365)
                      + ...|+..+++.++..+ ..++|++++||+.  ....+..+++.+.+.++++++..
T Consensus        66 ~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~  122 (160)
T PF12804_consen   66 PEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV  122 (160)
T ss_dssp             STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred             ccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence            4 3589999999999888 6788999999974  45668999999887777776654

...

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=5.4e-16  Score=128.79  Aligned_cols=106  Identities=23%  Similarity=0.395  Sum_probs=86.8

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |.|||||||.||||.|| |...||+|+.|.|+|||++.++.|.++||.+|+||+++..  ++. +++..    +.++.++
T Consensus         1 ~nAIIlAAG~gsR~~pl-T~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlk--E~F-eYLkd----Ky~vtLv   72 (231)
T COG4750           1 MNAIILAAGLGSRFVPL-TQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLK--EQF-EYLKD----KYDVTLV   72 (231)
T ss_pred             CceEEEecccccccccc-cccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehH--HHH-HHHHH----hcCeEEE
Confidence            46999999999999999 9999999999999999999999999999999999999652  233 45554    3468888


Q ss_pred             EcCCC--CChHHHHHHHHHHcCCCcEEEEeCCcccCCC
Q 017849           83 TVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP  118 (365)
Q Consensus        83 ~~~~~--~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~  118 (365)
                      ..+..  ....-++..+++++.  +..|+.+|.+...+
T Consensus        73 yN~kY~~yNn~ySlyla~d~l~--ntYiidsDnyl~kN  108 (231)
T COG4750          73 YNPKYREYNNIYSLYLARDFLN--NTYIIDSDNYLTKN  108 (231)
T ss_pred             eCchHHhhhhHHHHHHHHHHhc--ccEEeccchHhhhh
Confidence            76653  566788999999985  45667889765433

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=99.62  E-value=8.2e-15  Score=126.36  Aligned_cols=121  Identities=22%  Similarity=0.284  Sum_probs=92.8

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |.|||||||+|+||.     ..||+|++++|+|||+|+++++..+++++|+|++++.  .+.+..++...     ...+.
T Consensus         1 m~aIILAgG~gsRmg-----~~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~--~~~~~~~l~~~-----~~~~~   68 (183)
T TIGR00454         1 MDALIMAGGKGTRLG-----GVEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPH--TPKTEEYINSA-----YKDYK   68 (183)
T ss_pred             CeEEEECCccCccCC-----CCCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHhhc-----CcEEE
Confidence            579999999999993     2799999999999999999999999999999999864  24666666542     12222


Q ss_pred             EcCCCCChHHHHHHHHHHcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEE
Q 017849           83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAM  136 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l  136 (365)
                       .....|...++..+++.+. .++|+++.||+  +....++.+++.+...+...+.+
T Consensus        69 -~~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~  124 (183)
T TIGR00454        69 -NASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAV  124 (183)
T ss_pred             -ecCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEE
Confidence             2456788888888877543 56899999994  56778999999887655444433

At this time this gene appears to be present only in Archea

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=99.60  E-value=5.7e-14  Score=126.43  Aligned_cols=185  Identities=16%  Similarity=0.186  Sum_probs=115.1

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~   84 (365)
                      +||+|+|.|+||    .   +|+|++++|+|||.|+++++..+++++|+|+++.    +.+.+++..     .++.++..
T Consensus         2 ~iIpA~g~s~R~----~---~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~----~~i~~~~~~-----~g~~~v~~   65 (238)
T TIGR00466         2 VIIPARLASSRL----P---GKPLEDIFGKPMIVHVAENANESGADRCIVATDD----ESVAQTCQK-----FGIEVCMT   65 (238)
T ss_pred             EEEecCCCCCCC----C---CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH----HHHHHHHHH-----cCCEEEEe
Confidence            799999999999    3   5999999999999999999998899999999873    345555543     23444432


Q ss_pred             --CCCCChHHHHHHHHHHc---CCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849           85 --PEDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (365)
Q Consensus        85 --~~~~gt~~al~~~~~~i---~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (365)
                        ....|+. .+..+...+   ..+.++++.||  ++....+..+++.+.+.+++++.+..+..  ++.+..        
T Consensus        66 ~~~~~~Gt~-r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~--d~~~~~--------  134 (238)
T TIGR00466        66 SKHHNSGTE-RLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIH--DAEEAF--------  134 (238)
T ss_pred             CCCCCChhH-HHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecC--CHHHcc--------
Confidence              2234443 333343333   23458889999  67788899999988655556655554432  221110        


Q ss_pred             CCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHh--hcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILR--AVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~--~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                        ..+...++.|.+|+.+++....      ....++.++  +.|.  ....+.+.|||.|+++.|..|..-
T Consensus       135 --~p~~vk~v~~~~g~alyfsr~~------ip~~R~~~~~~~tpq--~~~~~~h~Giy~~~~~~L~~~~~~  195 (238)
T TIGR00466       135 --NPNAVKVVLDSQGYALYFSRSL------IPFDRDFFAKRQTPV--GDNLLRHIGIYGYRAGFIEEYVAW  195 (238)
T ss_pred             --CCCceEEEeCCCCeEEEecCCC------CCCCCCccccccccc--ccceeEEEEEEeCCHHHHHHHHhC
Confidence              1122334557667654433211      111111111  1111  112577999999999999988643

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.55  E-value=4.9e-13  Score=118.80  Aligned_cols=116  Identities=23%  Similarity=0.302  Sum_probs=86.2

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      .|||||||.|+||    ....||+|++++|+|||+|+++++..+ ++++++|++++... +.+..++..    ...+.++
T Consensus         1 ~aiIlAaG~s~R~----~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~~----~~~~~~~   71 (217)
T TIGR00453         1 SAVIPAAGRGTRF----GSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQ-EFFQKYLVA----RAVPKIV   71 (217)
T ss_pred             CEEEEcCcccccC----CCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHH-HHHHHHhhc----CCcEEEe
Confidence            3799999999999    445799999999999999999999998 79999999985421 233333321    1123333


Q ss_pred             EcCCCCChHHHHHHHHHHc-CCCcEEEEeCC--cccCCChHHHHHHHHhcC
Q 017849           83 TVPEDVGTAGALRAIAHHL-TAKDVLVVSGD--LVSDVPPGAVTAAHRRHD  130 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i-~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~  130 (365)
                        ....+..++++.++..+ ..+.++++.||  ++....+..+++.+.+.+
T Consensus        72 --~~~~~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~  120 (217)
T TIGR00453        72 --AGGDTRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAG  120 (217)
T ss_pred             --CCCchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence              22234668899888877 45679999999  477778999999886643

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=99.54  E-value=1.6e-13  Score=118.51  Aligned_cols=120  Identities=28%  Similarity=0.346  Sum_probs=90.8

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +.+||||||.|+||.      .||+|++++|+|||+|+++.+..+++++|+|+++...  ..+.+++.     ..++.++
T Consensus         1 ~~~vIlAgG~s~R~g------~~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~--~~~~~~~~-----~~~~~~~   67 (186)
T cd04182           1 IAAIILAAGRSSRMG------GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEA--DAVRAALA-----GLPVVVV   67 (186)
T ss_pred             CeEEEECCCCCCCCC------CCceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcH--HHHHHHhc-----CCCeEEE
Confidence            358999999999993      2899999999999999999999999999999998542  23333332     1244444


Q ss_pred             EcC-CCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEE
Q 017849           83 TVP-EDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus        83 ~~~-~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~  135 (365)
                      ..+ ...|++++++.+++.+.  .+.+++++||+  +....+..+++.+...++.+.+
T Consensus        68 ~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~  125 (186)
T cd04182          68 INPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGIVA  125 (186)
T ss_pred             eCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence            433 34789999999988876  46799999995  5566788888887755554433

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=99.51  E-value=2.4e-13  Score=112.34  Aligned_cols=110  Identities=25%  Similarity=0.389  Sum_probs=88.9

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |.+||+|||+|+||.    . .-|||++++|||||+|+++.+.+ .+++|+++++.+.  ..++.++.++     +++++
T Consensus         1 m~~iiMAGGrGtRmg----~-~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~t--p~t~~~~~~~-----gv~vi   67 (177)
T COG2266           1 MMAIIMAGGRGTRMG----R-PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHT--PKTKEYLESV-----GVKVI   67 (177)
T ss_pred             CceEEecCCcccccC----C-CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCC--HhHHHHHHhc-----CceEE
Confidence            469999999999993    2 45999999999999999999988 7899999998663  4778888764     46666


Q ss_pred             EcCCCCChHHHHHHHHHHcCCCcEEEEeCCcc--cCCChHHHHHHHH
Q 017849           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV--SDVPPGAVTAAHR  127 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i--~~~~l~~~l~~h~  127 (365)
                      .. ...|-..-++.+.+.+. .++|++++|+.  .+..+..+++.+.
T Consensus        68 ~t-pG~GYv~Dl~~al~~l~-~P~lvvsaDLp~l~~~~i~~vi~~~~  112 (177)
T COG2266          68 ET-PGEGYVEDLRFALESLG-TPILVVSADLPFLNPSIIDSVIDAAA  112 (177)
T ss_pred             Ec-CCCChHHHHHHHHHhcC-CceEEEecccccCCHHHHHHHHHHHh
Confidence            53 34677788999999885 49999999964  3456788888876

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=99.51  E-value=2.5e-13  Score=117.75  Aligned_cols=120  Identities=16%  Similarity=0.238  Sum_probs=89.8

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEc
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~   84 (365)
                      +||||||.|+||      +.||+|++++|+|||+|+++.+.++++++|+|++++..  +.+.+.+..    ..++.++..
T Consensus         2 ~iIla~G~s~R~------g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~--~~~~~~~~~----~~~v~~v~~   69 (188)
T TIGR03310         2 AIILAAGLSSRM------GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEA--DELVALLAN----HSNITLVHN   69 (188)
T ss_pred             eEEECCCCcccC------CCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcH--HHHHHHhcc----CCCeEEEEC
Confidence            799999999999      35899999999999999999999889999999998653  232222211    235666554


Q ss_pred             CC-CCChHHHHHHHHH-HcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEE
Q 017849           85 PE-DVGTAGALRAIAH-HLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAM  136 (365)
Q Consensus        85 ~~-~~gt~~al~~~~~-~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l  136 (365)
                      +. ..|++++++.+++ ....+.++++.||+  +....++.+++.+...+..+++.
T Consensus        70 ~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~  125 (188)
T TIGR03310        70 PQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP  125 (188)
T ss_pred             cChhcCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence            33 3688899998877 23346799999995  55667889998887666555443

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=99.50  E-value=1.3e-12  Score=116.14  Aligned_cols=123  Identities=20%  Similarity=0.281  Sum_probs=88.1

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      .+||||||.|+||    ....||+|+|++|+|||+|+++++..++ +++|+|++++...  .....+... .....+.++
T Consensus         2 ~~vILAaG~s~R~----~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~--~~~~~~~~~-~~~~~~~~~   74 (218)
T cd02516           2 AAIILAAGSGSRM----GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDI--DLAKELAKY-GLSKVVKIV   74 (218)
T ss_pred             EEEEECCcccccC----CCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHH--HHHHHHHhc-ccCCCeEEE
Confidence            5899999999999    4347999999999999999999999876 8999999885421  222222111 111223333


Q ss_pred             EcCCCCChHHHHHHHHHHcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 017849           83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (365)
                        ....+..++++.+++.+.   .+.++++.||  ++....++.+++.+.+.++.+++
T Consensus        75 --~~~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~  130 (218)
T cd02516          75 --EGGATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPA  130 (218)
T ss_pred             --CCchHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEE
Confidence              233456788999988873   3568889999  57777899999988766544433

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.49  E-value=9e-13  Score=112.90  Aligned_cols=187  Identities=19%  Similarity=0.232  Sum_probs=130.5

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.+||+|.-.+|||    ..   |||..|+|+|||.|+.++..++|.++|+|.+.+    +.+.+.+..     .+.+
T Consensus         2 ~~~~viIPAR~~STRL----pg---KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd----e~I~~av~~-----~G~~   65 (247)
T COG1212           2 MKFVVIIPARLASTRL----PG---KPLADIGGKPMIVRVAERALKSGADRVVVATDD----ERIAEAVQA-----FGGE   65 (247)
T ss_pred             CceEEEEecchhcccC----CC---CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC----HHHHHHHHH-----hCCE
Confidence            7889999999999999    44   999999999999999999999999999999984    467777764     3555


Q ss_pred             EEEcCC--CCChHHHHHHHHHHcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849           81 VATVPE--DVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (365)
Q Consensus        81 i~~~~~--~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (365)
                      .+....  ..|| +.+.++.+.+.   .+.++-+.||  ++....+..+++..++.++++..+..+..  ++.+.     
T Consensus        66 avmT~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~--~~ee~-----  137 (247)
T COG1212          66 AVMTSKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKIT--DEEEA-----  137 (247)
T ss_pred             EEecCCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecC--CHHHh-----
Confidence            555544  3454 55666655553   2347777899  57677788888888877777665554432  22221     


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCc
Q 017849          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD  228 (365)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~  228 (365)
                           ...+-..+++|.+|+.|+|.++.......      .   .   .....+...|||.|++.+|..|..-..
T Consensus       138 -----~nPN~VKvV~d~~g~ALYFSRs~iP~~rd------~---~---~~~p~l~HIGIYayr~~~L~~f~~~~p  195 (247)
T COG1212         138 -----FNPNVVKVVLDKEGYALYFSRAPIPYGRD------N---F---GGTPFLRHIGIYAYRAGFLERFVALKP  195 (247)
T ss_pred             -----cCCCcEEEEEcCCCcEEEEEcCCCCCccc------c---c---CCcchhheeehHHhHHHHHHHHHhcCC
Confidence                 12334557788888877665432221110      0   0   002467899999999999998876543

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=99.49  E-value=7.7e-13  Score=117.87  Aligned_cols=124  Identities=12%  Similarity=0.144  Sum_probs=90.6

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      ++.|||||+|.|+||    .   +|+|++++|+|||+|+++.+..++ +++|+|++..    +.+.+++...   ...+.
T Consensus         1 ~~~~iIlA~G~s~R~----~---~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~----~~i~~~~~~~---~~~~~   66 (223)
T cd02513           1 KILAIIPARGGSKGI----P---GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDD----EEIAEVARKY---GAEVP   66 (223)
T ss_pred             CeEEEEecCCCCCCC----C---CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHHh---CCCce
Confidence            357999999999999    4   399999999999999999999887 7888877652    2445554432   11112


Q ss_pred             EEEc----CCCCChHHHHHHHHHHcCC-----CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEee
Q 017849           81 VATV----PEDVGTAGALRAIAHHLTA-----KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICS  139 (365)
Q Consensus        81 i~~~----~~~~gt~~al~~~~~~i~~-----~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (365)
                      +...    .+..|+.++++.+++.+..     +.++++.||.  +...++..+++.+...+++.++....
T Consensus        67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~  136 (223)
T cd02513          67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE  136 (223)
T ss_pred             eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            2221    2345788999988876642     5799999994  77888999999998776665555443

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=99.48  E-value=6e-13  Score=119.33  Aligned_cols=128  Identities=19%  Similarity=0.308  Sum_probs=92.2

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.+||||||.|+||    ..+.||+|++++|+|||+|+++++..++ +++|+|+++.... ..+.+++..+......+
T Consensus         1 ~~~~~iIlAaG~g~R~----g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~-~~~~~~~~~~~~~~~~~   75 (230)
T PRK13385          1 MNYELIFLAAGQGKRM----NAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQER-KHVQDLMKQLNVADQRV   75 (230)
T ss_pred             CceEEEEECCeecccc----CCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhH-HHHHHHHHhcCcCCCce
Confidence            7788999999999999    6668999999999999999999998765 8999999875421 23334443321110123


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCc-EEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 017849           80 EVATVPEDVGTAGALRAIAHHLTAKD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (365)
                      .++  ....+..++++.+++.+...+ ++++.||  ++....++.+++.+.+.++.+.+
T Consensus        76 ~~v--~~g~~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~  132 (230)
T PRK13385         76 EVV--KGGTERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICA  132 (230)
T ss_pred             EEc--CCCchHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEE
Confidence            333  333455689999988775434 6777899  67777899999988776655444

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=99.46  E-value=1e-12  Score=117.54  Aligned_cols=121  Identities=21%  Similarity=0.278  Sum_probs=89.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |.+.+||||||.|+||    +...||+|++++|+|||+|+++++..++ +++|+|+++.... +.+.......   ...+
T Consensus         2 ~~~~~iILAaG~s~R~----g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~-~~~~~~~~~~---~~~~   73 (227)
T PRK00155          2 MMVYAIIPAAGKGSRM----GADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDR-PDFAELLLAK---DPKV   73 (227)
T ss_pred             CceEEEEEcCcccccc----CCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHH-HHHHHHhhcc---CCce
Confidence            6788999999999999    5668999999999999999999999875 8999999985421 1222221110   0123


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC-CCcEEEEeCC--cccCCChHHHHHHHHhcCC
Q 017849           80 EVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a  131 (365)
                      .++  ....+.+++++.+++.+. .+.++++.||  ++....++.+++.+.+.++
T Consensus        74 ~~~--~~~~~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~  126 (227)
T PRK00155         74 TVV--AGGAERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETGA  126 (227)
T ss_pred             EEe--CCcchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCCC
Confidence            332  233457899999988773 3568888899  6777889999998876543

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.43  E-value=1.4e-12  Score=117.84  Aligned_cols=123  Identities=22%  Similarity=0.300  Sum_probs=88.6

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      .+.+||||||.|+||    +...||+|++++|+|||+|+++.+... ++++|+|+++.... +.+...+..+     +..
T Consensus        24 ~i~aIILAAG~gsRm----g~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~-~~~~~~~~~~-----~~~   93 (252)
T PLN02728         24 SVSVILLAGGVGKRM----GANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYR-DVFEEAVENI-----DVP   93 (252)
T ss_pred             ceEEEEEcccccccC----CCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHH-HHHHHHHHhc-----CCc
Confidence            356899999999999    666899999999999999999999884 89999999985422 2333333321     222


Q ss_pred             EEEcCCCCChHHHHHHHHHHcCCCcEEEEeCC----cccCCChHHHHHHHHhcCCeEE
Q 017849           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGD----LVSDVPPGAVTAAHRRHDAVVT  134 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D----~i~~~~l~~~l~~h~~~~a~~t  134 (365)
                      +.......+..++++.++..+..+..+|+.+|    ++....+..+++...+.++.++
T Consensus        94 i~~v~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~  151 (252)
T PLN02728         94 LKFALPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAVL  151 (252)
T ss_pred             eEEcCCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEE
Confidence            33233445667889999887754455666667    4555667888888877766543

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=99.43  E-value=1.1e-12  Score=113.10  Aligned_cols=112  Identities=27%  Similarity=0.344  Sum_probs=85.7

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +.+||||||.|+||    .  .||++++++|+|||+|+++.+... +++|+|+++....  .    ..     ..++.++
T Consensus         1 ~~~iILAgG~s~Rm----g--~~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~--~----~~-----~~~~~~v   62 (181)
T cd02503           1 ITGVILAGGKSRRM----G--GDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQE--R----YA-----LLGVPVI   62 (181)
T ss_pred             CcEEEECCCccccC----C--CCceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChH--H----Hh-----hcCCcEe
Confidence            46899999999999    3  389999999999999999999887 8999999985521  1    11     1234455


Q ss_pred             EcC-CCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeE
Q 017849           83 TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (365)
Q Consensus        83 ~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~  133 (365)
                      ..+ ...|..++++.++..+..+.++++.||+  +....+..+++.+ ..+.++
T Consensus        63 ~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~  115 (181)
T cd02503          63 PDEPPGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA-EEGADA  115 (181)
T ss_pred             eCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence            433 3578899999998888667899999996  5566688888776 334443

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=99.42  E-value=2.9e-12  Score=111.41  Aligned_cols=120  Identities=19%  Similarity=0.259  Sum_probs=86.3

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~   83 (365)
                      .+||||||.|+||      +.+|.|++++|+|||+|+++.+...++++++|+++...  +.+ .++........++.++.
T Consensus         2 ~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~--~~~-~~~~~~~~~~~~~~~~~   72 (190)
T TIGR03202         2 VAIYLAAGQSRRM------GENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKY--AHL-SWLDPYLLADERIMLVC   72 (190)
T ss_pred             eEEEEcCCccccC------CCCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCcc--chh-hhhhHhhhcCCCeEEEE
Confidence            5899999999999      34799999999999999999888889999999997542  111 11211111122455554


Q ss_pred             cC-CCCChHHHHHHHHHHcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 017849           84 VP-EDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (365)
Q Consensus        84 ~~-~~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~  132 (365)
                      .+ ...|.+.+++.+++.+.   .+.+++++||  ++....+..+++..+.....
T Consensus        73 ~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~  127 (190)
T TIGR03202        73 CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDD  127 (190)
T ss_pred             CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence            33 34688899999988763   4679999999  46666788888876554443

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=99.40  E-value=2.3e-12  Score=112.32  Aligned_cols=114  Identities=23%  Similarity=0.303  Sum_probs=85.1

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |.+.+||||||.|+||    . +.||++++++|+|||+|+++.+. .++++|+|+++...  +.+    ..     .++.
T Consensus         2 ~~~~~vILA~G~s~Rm----~-~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~--~~~----~~-----~~~~   64 (193)
T PRK00317          2 PPITGVILAGGRSRRM----G-GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNL--ARY----AA-----FGLP   64 (193)
T ss_pred             CCceEEEEcCCCcccC----C-CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCCh--HHH----Hh-----cCCc
Confidence            5789999999999999    3 47899999999999999999998 77999999887431  111    11     1233


Q ss_pred             EEEcCC--CCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCC
Q 017849           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDA  131 (365)
Q Consensus        81 i~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a  131 (365)
                      ++....  ..|+..+++.+++....+.++++.||.  +....+..+++.+.+.+.
T Consensus        65 ~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~  119 (193)
T PRK00317         65 VIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDA  119 (193)
T ss_pred             EEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCC
Confidence            443322  368889999888876667799999995  555668888887654433

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=99.39  E-value=4.3e-12  Score=120.99  Aligned_cols=119  Identities=24%  Similarity=0.352  Sum_probs=89.2

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcc-
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH-   78 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~-   78 (365)
                      |++.+||||||.|+||    +...||++++++|+|||+|+++.+..++ +++|+|++++... +....+..     ... 
T Consensus         4 m~v~aIILAAG~GsRm----g~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~-~~~~~~~~-----~~~~   73 (378)
T PRK09382          4 SDISLVIVAAGRSTRF----SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDI-AYMKKALP-----EIKF   73 (378)
T ss_pred             CcceEEEECCCCCccC----CCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHH-HHHHHhcc-----cCCe
Confidence            5678999999999999    6678999999999999999999999988 7999999885421 12222111     111 


Q ss_pred             eEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCC--cccCCChHHHHHHHHhcCC
Q 017849           79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (365)
Q Consensus        79 v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a  131 (365)
                      +.+  .....+..++++.+++.+..+.+++..||  ++....++.+++..++.++
T Consensus        74 v~~--v~gG~~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~~~a  126 (378)
T PRK09382         74 VTL--VTGGATRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDKADC  126 (378)
T ss_pred             EEE--eCCCchHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhcCCe
Confidence            222  23445678999999988866678888898  5666778888887765443

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.38  E-value=5.8e-12  Score=110.45  Aligned_cols=112  Identities=19%  Similarity=0.203  Sum_probs=84.7

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.+||||||.|+||      +.+|++++++|+|||+|+++.+... +++|+|+++..   +.......      .++.
T Consensus         6 ~~~~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~---~~~~~~~~------~~~~   69 (200)
T PRK02726          6 NNLVALILAGGKSSRM------GQDKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP---ERYQSLLP------PGCH   69 (200)
T ss_pred             CCceEEEEcCCCcccC------CCCceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH---HHHHhhcc------CCCe
Confidence            5678999999999999      3479999999999999999999754 78898887632   12222111      1344


Q ss_pred             EEEcC-CCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHh
Q 017849           81 VATVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRR  128 (365)
Q Consensus        81 i~~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~  128 (365)
                      ++... ...|...+++.+++.+..+.++|+.||+  +....+..+++....
T Consensus        70 ~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         70 WLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             EecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            55433 3478999999999888767899999994  666678888887643

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=99.38  E-value=5.1e-12  Score=109.40  Aligned_cols=118  Identities=21%  Similarity=0.291  Sum_probs=86.4

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +.+||||||.|+||    . .+||+|++++|+|||+|+++.+.. ++++|+|+++...   .  .+...    ..++.++
T Consensus         1 ~~~iILAgG~s~Rm----g-~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~---~--~~~~~----~~~~~~i   65 (186)
T TIGR02665         1 ISGVILAGGRARRM----G-GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNP---E--RYAQA----GFGLPVV   65 (186)
T ss_pred             CeEEEEcCCccccC----C-CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCH---H--HHhhc----cCCCcEE
Confidence            35899999999999    3 359999999999999999999975 5899988886432   1  11111    1234444


Q ss_pred             Ec--CCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEE
Q 017849           83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus        83 ~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~  135 (365)
                      ..  +...|+.++++.+++.+..+.++++.||.  +....++.+++.+.+.++.+++
T Consensus        66 ~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  122 (186)
T TIGR02665        66 PDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADIAV  122 (186)
T ss_pred             ecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence            43  33589999999998888667899999995  5556678888876554444433

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=99.33  E-value=2.5e-11  Score=107.21  Aligned_cols=119  Identities=27%  Similarity=0.427  Sum_probs=84.5

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      .+||+|||.|+||    ..+.||++++++|+|+|.|+|+.+.+. .+++|+|++...+. +.+++++..     ..+.++
T Consensus         2 ~aIilAaG~G~R~----g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~-~~~~~~~~~-----~~v~iv   71 (221)
T PF01128_consen    2 AAIILAAGSGSRM----GSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDI-DYVEELLSK-----KKVKIV   71 (221)
T ss_dssp             EEEEEESS-STCC----TSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGH-HHHHHHHHH-----TTEEEE
T ss_pred             EEEEeCCccchhc----CcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhH-HHHHHhhcC-----CCEEEe
Confidence            5899999999999    778999999999999999999999886 48999999986543 455555543     234444


Q ss_pred             EcCCCCChHHHHHHHHHHcCCC-cEEEEeCC----cccCCChHHHHHHHHh-cCCeEEE
Q 017849           83 TVPEDVGTAGALRAIAHHLTAK-DVLVVSGD----LVSDVPPGAVTAAHRR-HDAVVTA  135 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~-~~lv~~~D----~i~~~~l~~~l~~h~~-~~a~~t~  135 (365)
                        .+.....++++.++..+... +++++ .|    ++....+.++++..++ .++.+..
T Consensus        72 --~GG~tR~~SV~ngL~~l~~~~d~VlI-HDaaRPfv~~~~i~~~i~~~~~~~~aai~~  127 (221)
T PF01128_consen   72 --EGGATRQESVYNGLKALAEDCDIVLI-HDAARPFVSPELIDRVIEAAREGHGAAIPA  127 (221)
T ss_dssp             --E--SSHHHHHHHHHHCHHCTSSEEEE-EETTSTT--HHHHHHHHHHHHHTCSEEEEE
T ss_pred             --cCChhHHHHHHHHHHHHHcCCCEEEE-EccccCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence              35667789999998887643 33333 35    5555668888888877 5555443

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=99.31  E-value=2.8e-11  Score=106.49  Aligned_cols=126  Identities=23%  Similarity=0.273  Sum_probs=88.0

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |.+.+||+|||.|+||    ..+.||.+++++|||||+|+|+.+..+. +++|+|+++..+. ..+.++..  ..  .+-
T Consensus         3 ~~~~~vilAaG~G~R~----~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~-~~~~~~~~--~~--~~~   73 (230)
T COG1211           3 MMVSAVILAAGFGSRM----GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDD-PYFEKLPK--LS--ADK   73 (230)
T ss_pred             ceEEEEEEcCcccccc----CCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhh-HHHHHhhh--hc--cCC
Confidence            5678999999999999    7899999999999999999999998876 7999999985332 34444442  11  122


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCC--Cc-EEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 017849           80 EVATVPEDVGTAGALRAIAHHLTA--KD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~--~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (365)
                      .+....+.....++++.+++.+..  ++ |||..+=  +++...+.++++.....++.+++
T Consensus        74 ~v~~v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~a  134 (230)
T COG1211          74 RVEVVKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILA  134 (230)
T ss_pred             eEEEecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEE
Confidence            233335667788999999988872  33 3333332  55556678888555445554444

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=99.31  E-value=9.2e-11  Score=104.42  Aligned_cols=121  Identities=15%  Similarity=0.206  Sum_probs=89.0

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~   83 (365)
                      |||+|+|.|+||    .   .|.+++++|+|||.|+++.+.+++ +++|+|.+..    +.+.+....+ +  ..+.+..
T Consensus         2 aiIpArG~Skr~----~---~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~----~~i~~~a~~~-g--~~v~~~r   67 (222)
T TIGR03584         2 AIIPARGGSKRI----P---RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD----EEIAEVAKSY-G--ASVPFLR   67 (222)
T ss_pred             EEEccCCCCCCC----C---CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC----HHHHHHHHHc-C--CEeEEeC
Confidence            799999999999    4   399999999999999999999987 6777776653    2455554432 1  1222221


Q ss_pred             ----cCCCCChHHHHHHHHHHcC----CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 017849           84 ----VPEDVGTAGALRAIAHHLT----AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (365)
Q Consensus        84 ----~~~~~gt~~al~~~~~~i~----~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (365)
                          .....|+.++++.+++.+.    .+.++++.+|  ++...+++.+++.+.+.+++..+.+.+
T Consensus        68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~  133 (222)
T TIGR03584        68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTS  133 (222)
T ss_pred             hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeec
Confidence                1335788899999987663    2558999999  577788999999998766776655544

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=99.30  E-value=4.4e-11  Score=101.83  Aligned_cols=117  Identities=27%  Similarity=0.363  Sum_probs=94.7

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      .+.+||||+|.|+||      +.+|.|+|+.|+||+.++++....++++++++++++.. .+......     ...++.+
T Consensus         5 ~v~~VvLAAGrssRm------G~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~-~~~~~a~~-----~~~~~~~   72 (199)
T COG2068           5 TVAAVVLAAGRSSRM------GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRV-AEAVEALL-----AQLGVTV   72 (199)
T ss_pred             ceEEEEEcccccccC------CCcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcch-hhHHHhhh-----ccCCeEE
Confidence            457999999999999      47899999999999999999999999999999999652 11222222     1346777


Q ss_pred             EEcCC-CCChHHHHHHHHHHcCCC--cEEEEeCC--cccCCChHHHHHHHHhcC
Q 017849           82 ATVPE-DVGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRRHD  130 (365)
Q Consensus        82 ~~~~~-~~gt~~al~~~~~~i~~~--~~lv~~~D--~i~~~~l~~~l~~h~~~~  130 (365)
                      +..+. ..|.+.+++.+......+  .++++.||  .+...++..+++.++..+
T Consensus        73 v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~  126 (199)
T COG2068          73 VVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRARG  126 (199)
T ss_pred             EeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhccccC
Confidence            77654 589999999998887644  69999999  488889999999998773

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=99.21  E-value=1.5e-10  Score=110.69  Aligned_cols=119  Identities=19%  Similarity=0.260  Sum_probs=87.4

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +.+||||||.|+||    . +.||+|++++|+|||+|+++.+.. .+++|+|++....  +.+.+++.       ++.++
T Consensus         6 i~~VILAgG~s~Rm----g-g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~--~~~~~~~~-------~~~~i   70 (366)
T PRK14489          6 IAGVILAGGLSRRM----N-GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDP--ARYQDLFP-------GLPVY   70 (366)
T ss_pred             ceEEEEcCCcccCC----C-CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCH--HHHHhhcc-------CCcEE
Confidence            57999999999999    3 478999999999999999999975 4899998776432  23332221       12222


Q ss_pred             Ec--CCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEE
Q 017849           83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAM  136 (365)
Q Consensus        83 ~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l  136 (365)
                      ..  +...|..++++.+++.+..+.+++++||+  +....+..+++.+...++++.+.
T Consensus        71 ~d~~~g~~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~  128 (366)
T PRK14489         71 PDILPGFQGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP  128 (366)
T ss_pred             ecCCCCCCChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence            22  22368889999998887666799999994  55666888888776666665543

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=99.18  E-value=1.7e-10  Score=99.80  Aligned_cols=111  Identities=22%  Similarity=0.331  Sum_probs=81.2

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |.+.+||||||+|+||       .+|+|++++|||||+|+++.|....- .++|..... .  .  .+.      ..+++
T Consensus         3 ~~~~~vILAGG~srRm-------~dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~-~--~--~~~------~~g~~   63 (192)
T COG0746           3 TPMTGVILAGGKSRRM-------RDKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRN-Q--G--RYA------EFGLP   63 (192)
T ss_pred             CCceEEEecCCccccc-------cccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCc-h--h--hhh------ccCCc
Confidence            4688999999999999       24999999999999999999988754 455544422 1  1  111      12455


Q ss_pred             EEEcCCCC-ChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 017849           81 VATVPEDV-GTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHD  130 (365)
Q Consensus        81 i~~~~~~~-gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~  130 (365)
                      ++...... |...+++.+++....+.+++++||+  +...-+..++....+.+
T Consensus        64 vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~  116 (192)
T COG0746          64 VVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG  116 (192)
T ss_pred             eeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence            66544333 9999999999988878999999995  44555666666665544

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=99.13  E-value=5.9e-10  Score=100.11  Aligned_cols=118  Identities=23%  Similarity=0.297  Sum_probs=82.2

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~   83 (365)
                      |||||||.|+||    .   +|+|++++|+|||+|+++.+..++ +++++|+++.....+.+.+++..     .++.++.
T Consensus         2 aiIlA~G~S~R~----~---~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-----~~v~~v~   69 (233)
T cd02518           2 AIIQARMGSTRL----P---GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-----LGVKVFR   69 (233)
T ss_pred             EEEeeCCCCCCC----C---CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-----cCCeEEE
Confidence            799999999999    4   399999999999999999999988 89999998854211244444432     2344544


Q ss_pred             cCCCCChHHHHHHHHHHcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 017849           84 VPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus        84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (365)
                      .+. .+.......+......+.++++.||  ++....++.+++.++..+++++.
T Consensus        70 ~~~-~~~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~  122 (233)
T cd02518          70 GSE-EDVLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTS  122 (233)
T ss_pred             CCc-hhHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            332 2222222223333334679999999  57777899999988776666553

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.12  E-value=6.6e-10  Score=97.08  Aligned_cols=101  Identities=20%  Similarity=0.257  Sum_probs=72.8

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCC-cchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~g-kplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.+||||||.|+||      +.+|++++++| +|||+|+++.+... +++|+|+++..    ..    .      ..+
T Consensus         7 ~~i~~vILAgG~s~Rm------G~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~----~~----~------~~~   65 (196)
T PRK00560          7 DNIPCVILAGGKSSRM------GENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK----KF----E------FNA   65 (196)
T ss_pred             cCceEEEECCcccccC------CCCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch----hc----c------cCC
Confidence            4578999999999999      46899999999 99999999999876 88899888731    11    0      122


Q ss_pred             EEEEc--CCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHH
Q 017849           80 EVATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAV  122 (365)
Q Consensus        80 ~i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~  122 (365)
                      .++..  ....|...++..++.....+.++|++||+  +....++.+
T Consensus        66 ~~v~d~~~~~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l  112 (196)
T PRK00560         66 PFLLEKESDLFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKL  112 (196)
T ss_pred             cEEecCCCCCCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHH
Confidence            33332  22356666777666555567899999996  333345555

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=99.09  E-value=9.8e-10  Score=105.30  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=78.2

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      .+.+||||||+|+||      +.+|+|++++|+|||+|+++.+... +++|+|+++...    ... +..     .++.+
T Consensus       174 ~i~~iILAGG~SsRm------G~~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~----~~~-~~~-----~~v~~  236 (369)
T PRK14490        174 PLSGLVLAGGRSSRM------GSDKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQ----AEQ-YRS-----FGIPL  236 (369)
T ss_pred             CceEEEEcCCccccC------CCCcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCch----hhH-Hhh-----cCCcE
Confidence            457999999999999      3589999999999999999999764 788888776331    111 111     24555


Q ss_pred             EEcCC-CCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHH
Q 017849           82 ATVPE-DVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAA  125 (365)
Q Consensus        82 ~~~~~-~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~  125 (365)
                      +.... ..|...++..+++....+.+++++||+  +....+..+++.
T Consensus       237 i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~DmP~i~~~~i~~L~~~  283 (369)
T PRK14490        237 ITDSYLDIGPLGGLLSAQRHHPDAAWLVVACDLPFLDEATLQQLVEG  283 (369)
T ss_pred             EeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence            54333 367778888887766656799999995  555567777665

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=99.00  E-value=3.5e-09  Score=99.91  Aligned_cols=108  Identities=21%  Similarity=0.283  Sum_probs=78.9

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +.+||||||+|+||      +.+|+|+++.|+||++|+++.+... +++|+|+++..    .... ..     ...+.++
T Consensus       161 i~~IILAGGkSsRM------G~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~----~~~~-~~-----~~~v~~I  223 (346)
T PRK14500        161 LYGLVLTGGKSRRM------GKDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPS----QWQG-TP-----LENLPTL  223 (346)
T ss_pred             ceEEEEeccccccC------CCCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCch----Hhhh-cc-----ccCCeEE
Confidence            56899999999999      4689999999999999999988754 88898887632    1111 00     0123344


Q ss_pred             Ec-CCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHH
Q 017849           83 TV-PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHR  127 (365)
Q Consensus        83 ~~-~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~  127 (365)
                      .. ....|...+|+.++.....+++++++||+  +....+..+++.+.
T Consensus       224 ~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~~  271 (346)
T PRK14500        224 PDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHYR  271 (346)
T ss_pred             eCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence            32 23479999999998877656789999995  54556777777653

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=98.91  E-value=1.5e-09  Score=98.93  Aligned_cols=63  Identities=22%  Similarity=0.313  Sum_probs=49.8

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHh--------CCCCeEEEEecCcchHHHHHHHHHhh
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLEL--------SNIKDLIVVVEGADAALRVGGWISAA   72 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~--------~gi~~v~vv~~~~~~~~~i~~~~~~~   72 (365)
                      .+||||||.||||    +...||+++||+   |+|+|++.++++..        .+|..+++...+.  .+.+.+++++.
T Consensus         2 a~viLaGG~GtRL----g~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t--~~~t~~~l~~~   75 (266)
T cd04180           2 AVVLLAGGLGTRL----GKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYT--HEKTQCYFEKI   75 (266)
T ss_pred             EEEEECCCCcccc----CCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchh--HHHHHHHHHHc
Confidence            5799999999999    789999999999   99999999999976        3455444444332  45788888763

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=98.81  E-value=6.5e-08  Score=82.71  Aligned_cols=125  Identities=12%  Similarity=0.133  Sum_probs=85.5

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |+..|||+|.|.++|.    ..   |.+.+++|+|||.|+++++.+++ +++|+|.+..    +.+.+....+ +  ..+
T Consensus         2 ~~~iAiIpAR~gSKgI----~~---KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs----~~Il~~A~~y-g--ak~   67 (228)
T COG1083           2 MKNIAIIPARGGSKGI----KN---KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDS----EEILEEAKKY-G--AKV   67 (228)
T ss_pred             cceEEEEeccCCCCcC----Cc---cchHHhCCcchHHHHHHHHhcCCccceEEEcCCc----HHHHHHHHHh-C--ccc
Confidence            6778999999999998    33   99999999999999999999999 6888777663    3555544433 1  122


Q ss_pred             EEEEc----CCCCChHHHHHHHHHHcC-CCc-EEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 017849           80 EVATV----PEDVGTAGALRAIAHHLT-AKD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (365)
Q Consensus        80 ~i~~~----~~~~gt~~al~~~~~~i~-~~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (365)
                      .+...    .....+.+++.++.+... .++ ++.+.+-  +....+++..++.+.+.+.+-.+.+++
T Consensus        68 ~~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e  135 (228)
T COG1083          68 FLKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVE  135 (228)
T ss_pred             cccCChhhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEee
Confidence            23322    122344456666665543 333 6666654  788889999999998876654444443

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=98.79  E-value=6.3e-08  Score=85.84  Aligned_cols=113  Identities=20%  Similarity=0.335  Sum_probs=77.6

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      .|||+|.|.++||    ..   |.|.+++|+|||+|+++.+.+++ +++|+|.|...    .+.+.+..+     ++.+.
T Consensus         1 iaiIpAR~gS~rl----p~---Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~----~i~~~~~~~-----g~~v~   64 (217)
T PF02348_consen    1 IAIIPARGGSKRL----PG---KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDE----EIDDIAEEY-----GAKVI   64 (217)
T ss_dssp             EEEEEE-SSSSSS----TT---GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSH----HHHHHHHHT-----TSEEE
T ss_pred             CEEEecCCCCCCC----Cc---chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCH----HHHHHHHHc-----CCeeE
Confidence            3899999999999    44   99999999999999999999887 79999998843    566666543     23333


Q ss_pred             EcCCCC-ChHHHHHHHHHHcCCC---cEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 017849           83 TVPEDV-GTAGALRAIAHHLTAK---DVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (365)
Q Consensus        83 ~~~~~~-gt~~al~~~~~~i~~~---~~lv~~~D--~i~~~~l~~~l~~h~~~~a~  132 (365)
                      .-++.. ..-+....+......+   .++.+.||  ++.+..+..+++.+.+..++
T Consensus        65 ~~~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~  120 (217)
T PF02348_consen   65 FRRGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED  120 (217)
T ss_dssp             E--TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred             EcChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence            333332 2223334443333333   68888889  45566789999999888765

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=98.61  E-value=4.3e-06  Score=78.38  Aligned_cols=131  Identities=20%  Similarity=0.264  Sum_probs=86.3

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHhCC------------CCeEEEEecCcchHHHHH
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELSN------------IKDLIVVVEGADAALRVG   66 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~~g------------i~~v~vv~~~~~~~~~i~   66 (365)
                      ++.+||||||.||||    +...||+|+||+   |+|++++.++.+...+            + .++|.++... .+.+.
T Consensus        15 ~va~viLaGG~GTRL----g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t-~~~t~   88 (323)
T cd04193          15 KVAVLLLAGGQGTRL----GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEAT-HEETR   88 (323)
T ss_pred             CEEEEEECCCccccc----CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhH-hHHHH
Confidence            467899999999999    889999999998   6999999999997742            3 3556666332 35788


Q ss_pred             HHHHh--hhc-CCcceEEEEc---------------------CCCCChHHHHHHH-----HHHcC---CCcEEEEeCCcc
Q 017849           67 GWISA--AYV-DRLHVEVATV---------------------PEDVGTAGALRAI-----AHHLT---AKDVLVVSGDLV  114 (365)
Q Consensus        67 ~~~~~--~~~-~~~~v~i~~~---------------------~~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i  114 (365)
                      +++++  +++ .+..+.+..|                     -.+.|.|+.....     ++.+.   .+++.+.+.|.+
T Consensus        89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~  168 (323)
T cd04193          89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI  168 (323)
T ss_pred             HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence            88875  221 1112222211                     0145666544432     22222   367888888963


Q ss_pred             -c-CCChHHHHHHHHhcCCeEEEEEee
Q 017849          115 -S-DVPPGAVTAAHRRHDAVVTAMICS  139 (365)
Q Consensus       115 -~-~~~l~~~l~~h~~~~a~~t~l~~~  139 (365)
                       . ..|. .++-.+..+++++.+-+.+
T Consensus       169 L~~~~Dp-~~lG~~~~~~~~~~~kvv~  194 (323)
T cd04193         169 LVKVADP-VFIGFCISKGADVGAKVVR  194 (323)
T ss_pred             cccccCH-HHhHHHHHcCCceEEEEEE
Confidence             3 4454 4678888889998875543

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

Probab=98.55  E-value=7e-07  Score=76.83  Aligned_cols=117  Identities=21%  Similarity=0.282  Sum_probs=82.6

Q ss_pred             CcceE-EEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcc
Q 017849            1 MDFQV-VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (365)
Q Consensus         1 M~~~a-vIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~   78 (365)
                      |.+.+ ||-|.-.+|||    ..   |.|+|++++|||+++|+++..+. +++++|.++..+..+.+..+..+.     +
T Consensus         1 ~~~I~~IiQARmgStRL----pg---KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G   68 (241)
T COG1861           1 MSMILVIIQARMGSTRL----PG---KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G   68 (241)
T ss_pred             CCcEEEEeeecccCccC----Cc---chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C
Confidence            44444 45555556788    44   99999999999999999998886 689999998665555666766642     4


Q ss_pred             eEEEEcCCCCChH----HHHHHHHHHcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEE
Q 017849           79 VEVATVPEDVGTA----GALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT  134 (365)
Q Consensus        79 v~i~~~~~~~gt~----~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t  134 (365)
                      +.+.     .|+.    +....+.+....+.++=+.||  ++.+.-+..+++.|.++|++-+
T Consensus        69 ~~vf-----rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~  125 (241)
T COG1861          69 FYVF-----RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV  125 (241)
T ss_pred             eeEe-----cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence            4443     3443    333344555555668888999  5556667889999999988743

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=98.39  E-value=4.5e-05  Score=74.87  Aligned_cols=130  Identities=18%  Similarity=0.286  Sum_probs=80.9

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHhC------------C-CCeEEEEecCcchHHHH
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS------------N-IKDLIVVVEGADAALRV   65 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~~------------g-i~~v~vv~~~~~~~~~i   65 (365)
                      ++.+||||||.||||    +...||+|+||+   |+|++++.++++...            + .-.++|.++... .+.+
T Consensus       106 kvavViLAGG~GTRL----g~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t-~~~t  180 (482)
T PTZ00339        106 EVAVLILAGGLGTRL----GSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFN-HDQT  180 (482)
T ss_pred             CeEEEEECCCCcCcC----CCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcch-HHHH
Confidence            467999999999999    778999999994   899999999999764            1 124566666443 3577


Q ss_pred             HHHHHhh--hc-CCcceEEEE----------------c------CCCCChHHHHHHH-----HHHcC---CCcEEEEeCC
Q 017849           66 GGWISAA--YV-DRLHVEVAT----------------V------PEDVGTAGALRAI-----AHHLT---AKDVLVVSGD  112 (365)
Q Consensus        66 ~~~~~~~--~~-~~~~v~i~~----------------~------~~~~gt~~al~~~-----~~~i~---~~~~lv~~~D  112 (365)
                      .+++.+.  ++ +...+.+..                .      -.+.|.|+.....     ++.+.   -+++.+.+.|
T Consensus       181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD  260 (482)
T PTZ00339        181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID  260 (482)
T ss_pred             HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence            8888642  11 111121111                0      0135666544432     22222   3578888888


Q ss_pred             cc-c-CCChHHHHHHHHhcCC-eEEEEE
Q 017849          113 LV-S-DVPPGAVTAAHRRHDA-VVTAMI  137 (365)
Q Consensus       113 ~i-~-~~~l~~~l~~h~~~~a-~~t~l~  137 (365)
                      .+ . ..|. .++-.+...++ ++...+
T Consensus       261 N~L~k~~DP-~flG~~~~~~~~~~~~kv  287 (482)
T PTZ00339        261 NILAKVLDP-EFIGLASSFPAHDVLNKC  287 (482)
T ss_pred             cccccccCH-HHhHHHHHCCchhheeee
Confidence            55 3 3343 36677777777 655443

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

Probab=97.94  E-value=0.0023  Score=59.26  Aligned_cols=191  Identities=13%  Similarity=0.119  Sum_probs=109.1

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHh----CCCC-eEEEEecCcchHHHHHHHHHhhhcC
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVD   75 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~----~gi~-~v~vv~~~~~~~~~i~~~~~~~~~~   75 (365)
                      ++.+|+||||.||||    ..+.||.++||. |+++++..++++..    .|.. ..+|-++... .+...+++++....
T Consensus         3 kvavl~LaGG~GTRL----G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~~~~~~   77 (300)
T cd00897           3 KLVVLKLNGGLGTSM----GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNT-DEDTKKILKKYAGV   77 (300)
T ss_pred             cEEEEEecCCccccc----CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcc-hHHHHHHHHHcCCC
Confidence            356789999999999    788999999995 56999999998854    3432 3555566443 35677787753211


Q ss_pred             CcceEEEEc------------------------CCCCChHHHHHHH-----HHHcC---CCcEEEEeCCcccC-CChHHH
Q 017849           76 RLHVEVATV------------------------PEDVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSD-VPPGAV  122 (365)
Q Consensus        76 ~~~v~i~~~------------------------~~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~-~~l~~~  122 (365)
                      +..+.+..|                        -.+.|.|+.....     ++.+.   .+++.+.+.|.+.. .|. .+
T Consensus        78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp-~~  156 (300)
T cd00897          78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDL-RI  156 (300)
T ss_pred             ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCH-HH
Confidence            111211110                        0134444433322     22222   36799999996543 454 37


Q ss_pred             HHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCc-EEEEeeccccccccccccHHHHhhcCcc
Q 017849          123 TAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSILRAVGQM  201 (365)
Q Consensus       123 l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~-~l~~~~~~~~~ek~~~i~~~~l~~~~~~  201 (365)
                      +..|..+++++++=+.+..  .|              .+.-|++... +|+ .++.+.+         ++.+...+... 
T Consensus       157 lg~~~~~~~~~~~evv~Kt--~~--------------dek~G~l~~~-~g~~~vvEyse---------~p~e~~~~~~~-  209 (300)
T cd00897         157 LNHMVDNKAEYIMEVTDKT--RA--------------DVKGGTLIQY-EGKLRLLEIAQ---------VPKEHVDEFKS-  209 (300)
T ss_pred             HHHHHhcCCceEEEEeecC--CC--------------CCcccEEEEE-CCEEEEEEecc---------CCHHHHHhhcC-
Confidence            8888888998887443321  11              1223444432 243 2333332         22222221110 


Q ss_pred             eeccCcccceeeeeCHHHHHHHHh
Q 017849          202 DIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       202 ~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                      .....+.++..++|+-+.|..+++
T Consensus       210 ~~~~~~~nt~n~~~~l~~L~~~~~  233 (300)
T cd00897         210 IKKFKIFNTNNLWVNLKAVKRVVE  233 (300)
T ss_pred             cccceEEEEeEEEEEHHHHHHHHH
Confidence            123457788888999988887764

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=97.83  E-value=0.00014  Score=62.44  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=62.1

Q ss_pred             CCCceeceeCC--cchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcC-CCCChHHHHHHHHH
Q 017849           23 EVPKALLPVAN--RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP-EDVGTAGALRAIAH   99 (365)
Q Consensus        23 ~~pK~llpv~g--kplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~-~~~gt~~al~~~~~   99 (365)
                      +.+|+|++++|  +|||+|+++.+. +.+++|+|+++...   ..    .     ..++.++... ...|...++..++.
T Consensus         2 G~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~---~~----~-----~~~~~~i~d~~~g~gpl~~~~~gl~   68 (178)
T PRK00576          2 GRDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ---PL----P-----ELPAPVLRDELRGLGPLPATGRGLR   68 (178)
T ss_pred             CCCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc---cc----c-----cCCCCEeccCCCCCCcHHHHHHHHH
Confidence            45899999999  999999999876 45899999987431   11    1     1123344321 23565565554443


Q ss_pred             Hc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 017849          100 HL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHD  130 (365)
Q Consensus       100 ~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~  130 (365)
                      ..   ..+.++|++||+  +....+..+++.+...+
T Consensus        69 ~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~  104 (178)
T PRK00576         69 AAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTD  104 (178)
T ss_pred             HHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCC
Confidence            32   346899999995  55556777777654443

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=97.74  E-value=0.0054  Score=59.98  Aligned_cols=190  Identities=11%  Similarity=0.121  Sum_probs=108.6

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceecee-CCcchHHHHHHHHHh----CCCC-eEEEEecCcchHHHHHHHHHhhhcCC
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR   76 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv-~gkplI~~~L~~l~~----~gi~-~v~vv~~~~~~~~~i~~~~~~~~~~~   76 (365)
                      +.+|.||||.||||    ....||.++++ .|+.+++..++++..    .|.. ..+|-++... .+...++++.+-..+
T Consensus        80 ~avlkLnGGlGTrm----G~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T-~~~T~~~l~k~~~~~  154 (469)
T PLN02474         80 LVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNT-HDDTQKIVEKYTNSN  154 (469)
T ss_pred             EEEEEecCCccccc----CCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCch-hHHHHHHHHHcCCCc
Confidence            45789999999999    88999999999 467999988888744    3432 2355555443 246677776532111


Q ss_pred             cceEEEEc----------------C--------CCCChHHHHHHH-----HHHcC---CCcEEEEeCCcccC-CChHHHH
Q 017849           77 LHVEVATV----------------P--------EDVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSD-VPPGAVT  123 (365)
Q Consensus        77 ~~v~i~~~----------------~--------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~-~~l~~~l  123 (365)
                      ..+.+..|                .        .+.|.|+.....     ++.+.   .+++.+.+.|.+.. .|. .++
T Consensus       155 ~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp-~~l  233 (469)
T PLN02474        155 IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDL-KIL  233 (469)
T ss_pred             cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCH-HHH
Confidence            12221111                0        124444433222     22222   36789999996543 454 477


Q ss_pred             HHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCc-EEEEeeccccccccccccHHHHhhcCcce
Q 017849          124 AAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSILRAVGQMD  202 (365)
Q Consensus       124 ~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~-~l~~~~~~~~~ek~~~i~~~~l~~~~~~~  202 (365)
                      ..|..+++++++=+.....  +              ...-|.+. ..+|+ +++.+.+         ++.+....... .
T Consensus       234 g~~~~~~~e~~~ev~~Kt~--~--------------d~kgG~l~-~~dgk~~lvEysq---------vp~e~~~~f~~-~  286 (469)
T PLN02474        234 NHLIQNKNEYCMEVTPKTL--A--------------DVKGGTLI-SYEGKVQLLEIAQ---------VPDEHVNEFKS-I  286 (469)
T ss_pred             HHHHhcCCceEEEEeecCC--C--------------CCCccEEE-EECCEEEEEEEec---------CCHHHHHhhcc-c
Confidence            8888888888775443221  1              11224443 22343 2333432         22222222111 1


Q ss_pred             eccCcccceeeeeCHHHHHHHHh
Q 017849          203 IRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       203 ~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                      ....+.++..++|+-+.|..+++
T Consensus       287 ~kf~~fNtnn~w~~L~~l~~~~~  309 (469)
T PLN02474        287 EKFKIFNTNNLWVNLKAIKRLVE  309 (469)
T ss_pred             ccceeeeeeeEEEEHHHHHHHhh
Confidence            23467899999999999988764

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2

Probab=97.54  E-value=0.0085  Score=58.24  Aligned_cols=191  Identities=17%  Similarity=0.218  Sum_probs=105.7

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHh----CCC-CeEEEEecCcchHHHHHHHHHhhhcCC
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAAYVDR   76 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~----~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~   76 (365)
                      +.+|+||||.||||    +...||.++||. |+.+++..++.+..    .|+ -..+|.++... .+...+++++++.-.
T Consensus        57 vavl~LaGGlGTrl----G~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~kyfg~~  131 (420)
T PF01704_consen   57 VAVLKLAGGLGTRL----GCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNT-HEDTRKFLEKYFGLD  131 (420)
T ss_dssp             EEEEEEEESBSGCC----TESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTT-HHHHHHHHHHGCGSS
T ss_pred             EEEEEEcCcccCcc----CCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCccc-HHHHHHHHHHhcCCC
Confidence            45788999999999    788999999995 45899988888764    232 24566666554 357788888743222


Q ss_pred             cceEEEEc----------------CC----------CCChHHHHHHH-----HHHcC---CCcEEEEeCCcccC-CChHH
Q 017849           77 LHVEVATV----------------PE----------DVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSD-VPPGA  121 (365)
Q Consensus        77 ~~v~i~~~----------------~~----------~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~-~~l~~  121 (365)
                      ..+.+..|                +.          +.|.|+.....     ++.+.   .+++.+.+.|.+.. .|. .
T Consensus       132 ~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp-~  210 (420)
T PF01704_consen  132 VDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP-V  210 (420)
T ss_dssp             CCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H-H
T ss_pred             cceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH-H
Confidence            22222111                01          22565533322     22221   36799999997543 454 4


Q ss_pred             HHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCcE-EEEeeccccccccccccHHHHhhcCc
Q 017849          122 VTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF-LLHIATGAELEKDTRIRKSILRAVGQ  200 (365)
Q Consensus       122 ~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-l~~~~~~~~~ek~~~i~~~~l~~~~~  200 (365)
                      ++..+.++++++.+-+.+...  |              .+.-|++... +|+. ++.+.         .++.+.......
T Consensus       211 ~lG~~~~~~~~~~~evv~Kt~--~--------------dek~Gvl~~~-~G~~~vvEys---------qip~~~~~~~~~  264 (420)
T PF01704_consen  211 FLGYMIEKNADFGMEVVPKTS--P--------------DEKGGVLCRY-DGKLQVVEYS---------QIPKEHMAEFKD  264 (420)
T ss_dssp             HHHHHHHTT-SEEEEEEE-CS--T--------------TTSSEEEEEE-TTEEEEEEGG---------GS-HHGHHHHTS
T ss_pred             HHHHHHhccchhheeeeecCC--C--------------CCceeEEEEe-CCccEEEEec---------cCCHHHHHhhhc
Confidence            788888889888776554321  1              1233555433 3432 22222         223222222111


Q ss_pred             ceeccCcccceeeeeCHHHHHHHHhc
Q 017849          201 MDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       201 ~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                      . -...+.+++--+|+-..|..+++.
T Consensus       265 ~-~~~~~FntnNi~~~l~~l~~~~~~  289 (420)
T PF01704_consen  265 I-KGFLLFNTNNIWFSLDFLKRLLER  289 (420)
T ss_dssp             T-TTSBEEEEEEEEEEHHHHHHHHHT
T ss_pred             c-ccceEEEeceeeEEHHHHHHHHHh
Confidence            0 012445777679999999887654

7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase

Probab=97.17  E-value=0.037  Score=54.58  Aligned_cols=191  Identities=12%  Similarity=0.161  Sum_probs=107.3

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHhC--------------CC-CeEEEEecCcchHHH
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------------NI-KDLIVVVEGADAALR   64 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~~--------------gi-~~v~vv~~~~~~~~~   64 (365)
                      +-+|+||||.||||    ....||.+++|+   ++.+++...+++...              ++ =..+|.++... .+.
T Consensus       117 vavvlLAGGqGTRL----G~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T-~~~  191 (493)
T PLN02435        117 LAVVLLSGGQGTRL----GSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFT-DEA  191 (493)
T ss_pred             EEEEEeCCCccccc----CCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcch-hHH
Confidence            45788999999999    889999999885   789999998886321              11 13466666543 356


Q ss_pred             HHHHHHhh--hc-CCcceEEEEc---------------------CCCCChHHHHHHH-----HHHcC---CCcEEEEeCC
Q 017849           65 VGGWISAA--YV-DRLHVEVATV---------------------PEDVGTAGALRAI-----AHHLT---AKDVLVVSGD  112 (365)
Q Consensus        65 i~~~~~~~--~~-~~~~v~i~~~---------------------~~~~gt~~al~~~-----~~~i~---~~~~lv~~~D  112 (365)
                      ..+++++.  ++ ....+.+..|                     -.+.|.|+.....     ++.+.   -+++.+.+.|
T Consensus       192 T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD  271 (493)
T PLN02435        192 TRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVD  271 (493)
T ss_pred             HHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecc
Confidence            77888752  21 1122332211                     1245666543322     22232   2568888888


Q ss_pred             cc-c-CCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEE-cCCCcE-EEEeeccccccccc
Q 017849          113 LV-S-DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGM-DPTKQF-LLHIATGAELEKDT  188 (365)
Q Consensus       113 ~i-~-~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-d~~~~~-l~~~~~~~~~ek~~  188 (365)
                      .+ . ..|. .++-.+..+++++.+-+.+..  +|.              +.-|++.. +.+|+. +..+.+        
T Consensus       272 N~L~~~~DP-~flG~~~~~~~d~~~kVv~K~--~~~--------------EkvG~i~~~~~~g~~~vvEYsE--------  326 (493)
T PLN02435        272 NALVRVADP-TFLGYFIDKGVASAAKVVRKA--YPQ--------------EKVGVFVRRGKGGPLTVVEYSE--------  326 (493)
T ss_pred             cccccccCH-HHHHHHHhcCCceEEEeeecC--CCC--------------CceeEEEEecCCCCEEEEEecc--------
Confidence            63 3 3444 467888888888877543321  121              22355543 234432 223322        


Q ss_pred             cccHHHHhhc-C-cceeccCcccceeeeeCHHHHHHHH
Q 017849          189 RIRKSILRAV-G-QMDIRADLMDAHMYAFNRSVLQEVL  224 (365)
Q Consensus       189 ~i~~~~l~~~-~-~~~~~~~l~~~giyi~s~~vl~~~~  224 (365)
                       ++..+-... + .-.+.....+...++|+-+.|..+.
T Consensus       327 -l~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~  363 (493)
T PLN02435        327 -LDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVA  363 (493)
T ss_pred             -CCHHHHhccCccccccccchhhHHHhhccHHHHHHHH
Confidence             121111110 0 0123346667788899999888774

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=97.10  E-value=0.0027  Score=55.10  Aligned_cols=85  Identities=21%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             CcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCC--CcEEEEe
Q 017849           33 NRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA--KDVLVVS  110 (365)
Q Consensus        33 gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~  110 (365)
                      -+|||.|+++.+..+++.+++++++..    .+..+...     .++.++..+. .|.+.+++.+.+.+..  +.++++.
T Consensus        29 ~~~ll~~~l~~l~~~~~~~vvvv~~~~----~~~~~~~~-----~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~   98 (195)
T TIGR03552        29 ALAMLRDVITALRGAGAGAVLVVSPDP----ALLEAARN-----LGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILM   98 (195)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCCH----HHHHHHHh-----cCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEe
Confidence            379999999999998888888887732    33343322     2455655443 4899999999876643  3699999


Q ss_pred             CC--cccCCChHHHHHHHH
Q 017849          111 GD--LVSDVPPGAVTAAHR  127 (365)
Q Consensus       111 ~D--~i~~~~l~~~l~~h~  127 (365)
                      ||  ++....++.+++...
T Consensus        99 ~D~P~l~~~~i~~l~~~~~  117 (195)
T TIGR03552        99 ADLPLLTPRELKRLLAAAT  117 (195)
T ss_pred             CCCCCCCHHHHHHHHHhcc
Confidence            99  466677888887664

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=97.04  E-value=0.038  Score=53.54  Aligned_cols=130  Identities=18%  Similarity=0.214  Sum_probs=76.8

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHhC----CCC-eEEEEecCcchHHHHHHHHHh--hhc
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NIK-DLIVVVEGADAALRVGGWISA--AYV   74 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~~----gi~-~v~vv~~~~~~~~~i~~~~~~--~~~   74 (365)
                      +-+|+||||.|+||    ....||.+++|. |+++++.+.+.+..+    +++ ..++-++...  +....++..  ++.
T Consensus       106 lAvl~LaGGqGtrl----G~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt--~~t~s~f~~~~Y~~  179 (472)
T COG4284         106 LAVLKLAGGQGTRL----GCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNT--EETDSYFKSNDYFG  179 (472)
T ss_pred             eEEEEecCCccccc----ccCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCc--HHHHHHHhhhhhcC
Confidence            45789999999999    788999999999 889999988877443    332 3444445332  123333322  111


Q ss_pred             -CCcceEEEEc------------------C-----CCCChH---HHHHH--HHHHc-C--CCcEEEEeCCc-ccCCChHH
Q 017849           75 -DRLHVEVATV------------------P-----EDVGTA---GALRA--IAHHL-T--AKDVLVVSGDL-VSDVPPGA  121 (365)
Q Consensus        75 -~~~~v~i~~~------------------~-----~~~gt~---~al~~--~~~~i-~--~~~~lv~~~D~-i~~~~l~~  121 (365)
                       ++..+.+..|                  +     .+.|.|   .+|..  ..+.+ .  .+.+.|.+.|. ....|+. 
T Consensus       180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~-  258 (472)
T COG4284         180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLK-  258 (472)
T ss_pred             CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHH-
Confidence             1111221111                  1     123444   34443  22222 2  35688888895 4456764 


Q ss_pred             HHHHHHhcCCeEEEEEee
Q 017849          122 VTAAHRRHDAVVTAMICS  139 (365)
Q Consensus       122 ~l~~h~~~~a~~t~l~~~  139 (365)
                      ++..+...+.++++=+..
T Consensus       259 ~lg~~~~~~~e~~~e~t~  276 (472)
T COG4284         259 FLGFMAETNYEYLMETTD  276 (472)
T ss_pred             HHHHHHhcCcceeEEEee
Confidence            677888888888775543

>PLN02830 UDP-sugar pyrophosphorylase

Probab=96.75  E-value=0.13  Score=52.40  Aligned_cols=132  Identities=15%  Similarity=0.134  Sum_probs=81.7

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHhC-----------CC-CeEEEEecCcchHHHHHH
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS-----------NI-KDLIVVVEGADAALRVGG   67 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~~-----------gi-~~v~vv~~~~~~~~~i~~   67 (365)
                      +.+|+||||.||||    ....||.++|++   |+++++..++.+...           ++ -..+|.++... .+...+
T Consensus       129 vavllLaGGlGTRL----G~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T-~~~T~~  203 (615)
T PLN02830        129 AAFVLVAGGLGERL----GYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDT-HARTLK  203 (615)
T ss_pred             EEEEEecCCccccc----CCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcch-hHHHHH
Confidence            45789999999999    788999999984   789999999997543           11 23566666543 356777


Q ss_pred             HHHh--hhc-CCcceEEEEc----------------C--------CCCChHHHHHHH-----HHHcC---CCcEEEEeCC
Q 017849           68 WISA--AYV-DRLHVEVATV----------------P--------EDVGTAGALRAI-----AHHLT---AKDVLVVSGD  112 (365)
Q Consensus        68 ~~~~--~~~-~~~~v~i~~~----------------~--------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D  112 (365)
                      ++++  +++ .+..+.+..|                +        .+.|.|+.....     ++.+.   .+++.+.+.|
T Consensus       204 ~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vD  283 (615)
T PLN02830        204 LLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDT  283 (615)
T ss_pred             HHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEecc
Confidence            7775  221 1112222111                1        134555433322     22221   2567888888


Q ss_pred             c--ccCCChHHHHHHHHhcCCeEEEEEeee
Q 017849          113 L--VSDVPPGAVTAAHRRHDAVVTAMICSV  140 (365)
Q Consensus       113 ~--i~~~~l~~~l~~h~~~~a~~t~l~~~~  140 (365)
                      .  +...+ -.++-.+..+++++.+.+.+.
T Consensus       284 N~L~~~Ad-p~flG~~~~~~~d~~~kvv~K  312 (615)
T PLN02830        284 NGLVFKAI-PAALGVSATKGFDMNSLAVPR  312 (615)
T ss_pred             chhhhccc-HHHhHHHHhcCCceEEEEEEC
Confidence            4  22334 567888888899888766543

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=96.72  E-value=0.047  Score=43.78  Aligned_cols=97  Identities=21%  Similarity=0.132  Sum_probs=65.1

Q ss_pred             eceeCCc-chHHHHHHHHHhCC--CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849           28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~  104 (365)
                      ++|..|+ +++..+++++.+.+  ..+++|+.+...  +...+.+...................|.+.++..+.+....+
T Consensus         2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d   79 (156)
T cd00761           2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGST--DGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARGE   79 (156)
T ss_pred             EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCC--ccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcCC
Confidence            4566665 99999999999987  678888877543  234444443221112234444556788899998888877667


Q ss_pred             cEEEEeCCcccCCC-hHHHHHHH
Q 017849          105 DVLVVSGDLVSDVP-PGAVTAAH  126 (365)
Q Consensus       105 ~~lv~~~D~i~~~~-l~~~l~~h  126 (365)
                      .++++.+|.+...+ +..++..+
T Consensus        80 ~v~~~d~D~~~~~~~~~~~~~~~  102 (156)
T cd00761          80 YILFLDADDLLLPDWLERLVAEL  102 (156)
T ss_pred             EEEEECCCCccCccHHHHHHHHH
Confidence            89999999877665 44443443

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

Probab=96.70  E-value=0.0055  Score=56.98  Aligned_cols=63  Identities=21%  Similarity=0.304  Sum_probs=48.4

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceecee---CCcchHHHHHHHHHhC--------CC-CeEEEEecCcchHHHHHHHHHh
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELS--------NI-KDLIVVVEGADAALRVGGWISA   71 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv---~gkplI~~~L~~l~~~--------gi-~~v~vv~~~~~~~~~i~~~~~~   71 (365)
                      .+|+||||.||||    ....||.++|+   .|+++++..++++...        +. -..+|.++... .+...+++++
T Consensus         2 a~vllaGG~GTRL----G~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~T-h~~T~~~fe~   76 (315)
T cd06424           2 VFVLVAGGLGERL----GYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDT-HSKTLKLLEE   76 (315)
T ss_pred             EEEEecCCCcccc----CCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCch-hHHHHHHHHH
Confidence            4789999999999    88999999999   4889999999988542        21 24566776544 3577788874

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=95.98  E-value=0.14  Score=42.01  Aligned_cols=108  Identities=18%  Similarity=0.166  Sum_probs=72.7

Q ss_pred             eceeCCc-chHHHHHHHHHhC--CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849           28 LLPVANR-PVLSYVLEQLELS--NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~--gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~  104 (365)
                      .+|.-|+ ..|..+|+.+.+.  ...+|+|+-+...  +...+.+.++......+.++..+...|.+.++..+.+....+
T Consensus         3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~   80 (169)
T PF00535_consen    3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGST--DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGE   80 (169)
T ss_dssp             EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S--SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SS
T ss_pred             EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccc--ccccccccccccccccccccccccccccccccccccccccee
Confidence            4677676 7889999988776  3457777765431  233444444322234678887777778889999998888778


Q ss_pred             cEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEEE
Q 017849          105 DVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAMI  137 (365)
Q Consensus       105 ~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l~  137 (365)
                      .++++..|.+...+ +..+++.+.+.+.++.+..
T Consensus        81 ~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~  114 (169)
T PF00535_consen   81 YILFLDDDDIISPDWLEELVEALEKNPPDVVIGS  114 (169)
T ss_dssp             EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence            89999999766555 8889999888777655443

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=95.73  E-value=0.0052  Score=54.97  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=20.7

Q ss_pred             EEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 017849          304 VYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (365)
Q Consensus       304 ~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~~  333 (365)
                      +|.+  +|||..+   .+|.++|+++|+..
T Consensus        42 ~~~~--~gyW~Di---~~yl~an~diL~~~   66 (231)
T TIGR03532        42 SGVL--FGEWEDI---EPFIEANKDKIKDY   66 (231)
T ss_pred             cEEE--EEeHHHH---HHHHHHhHhhhcce
Confidence            4555  7899888   99999999999763

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=92.97  E-value=2.7  Score=37.45  Aligned_cols=104  Identities=21%  Similarity=0.249  Sum_probs=68.0

Q ss_pred             CCCCCc--eeceeCCc-chHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHH
Q 017849           21 SKEVPK--ALLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGA   93 (365)
Q Consensus        21 t~~~pK--~llpv~gk-plI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~a   93 (365)
                      ....|+  -++|.-|. ..|..+|+.+.....    -+++|+.+...  +...+.++... .. .+.++..+...|-+.+
T Consensus        25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~-~~-~v~~i~~~~~~g~~~a  100 (251)
T cd06439          25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGST--DGTAEIAREYA-DK-GVKLLRFPERRGKAAA  100 (251)
T ss_pred             CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC--ccHHHHHHHHh-hC-cEEEEEcCCCCChHHH
Confidence            455555  56777776 788888888866542    25777665332  23344444321 11 4666665666788888


Q ss_pred             HHHHHHHcCCCcEEEEeCCcccCCC-hHHHHHHHHh
Q 017849           94 LRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRR  128 (365)
Q Consensus        94 l~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~  128 (365)
                      +..+.+....+.++++.+|.+...+ +..+++....
T Consensus       101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~  136 (251)
T cd06439         101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFAD  136 (251)
T ss_pred             HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcC
Confidence            8888887777789999999766544 7777777643

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=92.97  E-value=1.4  Score=37.08  Aligned_cols=106  Identities=18%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             ceeCCc-chHHHHHHHHHhC----CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849           29 LPVANR-PVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (365)
Q Consensus        29 lpv~gk-plI~~~L~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~  103 (365)
                      +|..+. ..|..+|+.+.+.    ...+|+|+-+...  +...+.+.........+.++..+...|.+.++..+.+....
T Consensus         3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~--d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~g   80 (185)
T cd04179           3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGST--DGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAARG   80 (185)
T ss_pred             ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCC--CChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhcC
Confidence            455555 5677788888666    2567777754321  12333333321111134555556678888888888887777


Q ss_pred             CcEEEEeCCcccCC-ChHHHHHHHHhcCCeEEEE
Q 017849          104 KDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTAM  136 (365)
Q Consensus       104 ~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~t~l  136 (365)
                      +.++++.+|..... -+..++......+.++.+.
T Consensus        81 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g  114 (185)
T cd04179          81 DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG  114 (185)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence            78999999965443 4778887755556655443

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=92.85  E-value=3  Score=33.98  Aligned_cols=97  Identities=15%  Similarity=0.105  Sum_probs=64.0

Q ss_pred             eceeCCc-chHHHHHHHHHhCC--CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849           28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~  104 (365)
                      ++|.-|+ ..|..+++.+.+..  ..+++|+.+...  +...+.+.....   .+.++..+...|.+.++..+.+....+
T Consensus         2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~--~~~~~~~~~~~~---~~~~~~~~~~~g~~~a~n~~~~~~~~~   76 (166)
T cd04186           2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNAST--DGSVELLRELFP---EVRLIRNGENLGFGAGNNQGIREAKGD   76 (166)
T ss_pred             EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCC--chHHHHHHHhCC---CeEEEecCCCcChHHHhhHHHhhCCCC
Confidence            3566565 78999999997763  456777665332  233444443211   355665566788999998888888767


Q ss_pred             cEEEEeCCcccCCC-hHHHHHHHHhc
Q 017849          105 DVLVVSGDLVSDVP-PGAVTAAHRRH  129 (365)
Q Consensus       105 ~~lv~~~D~i~~~~-l~~~l~~h~~~  129 (365)
                      .++++..|.+...+ +..+++.+.+.
T Consensus        77 ~i~~~D~D~~~~~~~l~~~~~~~~~~  102 (166)
T cd04186          77 YVLLLNPDTVVEPGALLELLDAAEQD  102 (166)
T ss_pred             EEEEECCCcEECccHHHHHHHHHHhC
Confidence            78888888666544 67777765543

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=91.70  E-value=2.6  Score=36.60  Aligned_cols=105  Identities=15%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             eceeCCc-chHHHHHHHHHhCC---CCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849           28 LLPVANR-PVLSYVLEQLELSN---IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~g---i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~  103 (365)
                      ++|.-|. ..|..+|+.+.+.-   --+|+||-+...  +...+.+.++......+.++......|-+.++..+.+....
T Consensus         2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~--d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a~g   79 (224)
T cd06442           2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSP--DGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAARG   79 (224)
T ss_pred             eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--CChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHcCC
Confidence            3566565 67888888886543   246677654321  22233333221111234555556678888999888887777


Q ss_pred             CcEEEEeCCcccCC-ChHHHHHHHHhcCCeEE
Q 017849          104 KDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVT  134 (365)
Q Consensus       104 ~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~t  134 (365)
                      +.++++.+|..... .+..+++.....+.++.
T Consensus        80 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v  111 (224)
T cd06442          80 DVIVVMDADLSHPPEYIPELLEAQLEGGADLV  111 (224)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence            78899999965544 47777777555555443

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=91.60  E-value=4.8  Score=34.25  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             eceeCCc---chHHHHHHHHHhCCC--CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849           28 LLPVANR---PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (365)
Q Consensus        28 llpv~gk---plI~~~L~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~  102 (365)
                      ++|+.++   ..|..+|+.+.....  .+++|+-.... .+...+.+..+. .+.++.++..+...|.+.+...+.....
T Consensus         3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss-~d~t~~~~~~~~-~~~~i~~i~~~~n~G~~~a~N~g~~~a~   80 (201)
T cd04195           3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPV-TQSLNEVLEEFK-RKLPLKVVPLEKNRGLGKALNEGLKHCT   80 (201)
T ss_pred             EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCC-chhHHHHHHHHH-hcCCeEEEEcCccccHHHHHHHHHHhcC
Confidence            4677665   389999999977642  46666644321 234444444322 1234666655566888888888887776


Q ss_pred             CCcEEEEeCCcccC-CChHHHHHHHHh
Q 017849          103 AKDVLVVSGDLVSD-VPPGAVTAAHRR  128 (365)
Q Consensus       103 ~~~~lv~~~D~i~~-~~l~~~l~~h~~  128 (365)
                      .+.++++.+|.+.. .-+..+++...+
T Consensus        81 gd~i~~lD~Dd~~~~~~l~~~~~~~~~  107 (201)
T cd04195          81 YDWVARMDTDDISLPDRFEKQLDFIEK  107 (201)
T ss_pred             CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence            67789999996554 447777777644

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=91.45  E-value=2.3  Score=36.86  Aligned_cols=106  Identities=20%  Similarity=0.177  Sum_probs=62.4

Q ss_pred             ceeCCc-chHHHHHHHHHhC------CCCeEEEEecCcchHHHHHHHHHhhhcC-CcceEEEEcCCCCChHHHHHHHHHH
Q 017849           29 LPVANR-PVLSYVLEQLELS------NIKDLIVVVEGADAALRVGGWISAAYVD-RLHVEVATVPEDVGTAGALRAIAHH  100 (365)
Q Consensus        29 lpv~gk-plI~~~L~~l~~~------gi~~v~vv~~~~~~~~~i~~~~~~~~~~-~~~v~i~~~~~~~gt~~al~~~~~~  100 (365)
                      +|.-|. .-|..+|+.+.+.      ..-+|+|+-+...  +...+.++.+... ...+.++......|.+.++..+.+.
T Consensus         3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~--D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~   80 (211)
T cd04188           3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSK--DGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLA   80 (211)
T ss_pred             EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC--CchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHH
Confidence            455554 5666677776543      2346776644321  1222333322110 1113555555668899999989887


Q ss_pred             cCCCcEEEEeCCcccC-CChHHHHHHHHhcCCeEEEE
Q 017849          101 LTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDAVVTAM  136 (365)
Q Consensus       101 i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a~~t~l  136 (365)
                      ...+.++++.+|...+ ..+..+++.....+.++.+.
T Consensus        81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g  117 (211)
T cd04188          81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG  117 (211)
T ss_pred             hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence            7778899999996554 45777877755555555443

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=91.30  E-value=4.3  Score=36.06  Aligned_cols=106  Identities=16%  Similarity=0.134  Sum_probs=64.0

Q ss_pred             eceeCCc-chHHHHHHHHHhCCCC----eEEEEecCcchHHHHHHHHHhhhcCCcceEEEE--cCCCCChHHHHHHHHHH
Q 017849           28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVAT--VPEDVGTAGALRAIAHH  100 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~--~~~~~gt~~al~~~~~~  100 (365)
                      ++|.-|. ..|..+|+.+.+....    +|+|+.....  +...+.+..+.. .....++.  .....|-+.++..+.+.
T Consensus         6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~--d~t~~i~~~~~~-~~~~~i~~~~~~~~~G~~~a~n~g~~~   82 (241)
T cd06427           6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDD--EETIAAARALRL-PSIFRVVVVPPSQPRTKPKACNYALAF   82 (241)
T ss_pred             EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCC--chHHHHHHHhcc-CCCeeEEEecCCCCCchHHHHHHHHHh
Confidence            4566565 6788888888765432    4666654321  233334443211 11233333  23456788898888887


Q ss_pred             cCCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 017849          101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM  136 (365)
Q Consensus       101 i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l  136 (365)
                      ...+.++++.+|.+...+ +..+++.+.+.+.++.++
T Consensus        83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~  119 (241)
T cd06427          83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV  119 (241)
T ss_pred             cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence            777789999999766554 778888776544555544

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=91.09  E-value=4  Score=33.11  Aligned_cols=99  Identities=22%  Similarity=0.206  Sum_probs=61.3

Q ss_pred             eceeCCc-chHHHHHHHHHhCC--CCeEEEEecCcchHHHHHHHHHhhhcCC-cceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849           28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDR-LHVEVATVPEDVGTAGALRAIAHHLTA  103 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~-~~v~i~~~~~~~gt~~al~~~~~~i~~  103 (365)
                      .+|.-|+ ..|..+|+.+.+..  ..+++|+-+...  +...+.+..+.... ..+.+.......|.+.++..+.+....
T Consensus         2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~   79 (180)
T cd06423           2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGST--DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKG   79 (180)
T ss_pred             eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCc--cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCC
Confidence            3566665 78899999998775  346666654332  22333343322111 123344445668888888888888777


Q ss_pred             CcEEEEeCCcccCCC-hHHHHHHHHh
Q 017849          104 KDVLVVSGDLVSDVP-PGAVTAAHRR  128 (365)
Q Consensus       104 ~~~lv~~~D~i~~~~-l~~~l~~h~~  128 (365)
                      +.++++.+|.+...+ +..++..+.+
T Consensus        80 ~~i~~~D~D~~~~~~~l~~~~~~~~~  105 (180)
T cd06423          80 DIVVVLDADTILEPDALKRLVVPFFA  105 (180)
T ss_pred             CEEEEECCCCCcChHHHHHHHHHhcc
Confidence            789999999655544 6666455544

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=90.71  E-value=3.8  Score=36.10  Aligned_cols=103  Identities=16%  Similarity=0.112  Sum_probs=61.9

Q ss_pred             eceeCCc-chHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849           28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~  102 (365)
                      ++|.-|+ +.|..+|+.+.....    -+|+|+-+...  +...+.++........+.++. ....|-+.++..+++...
T Consensus         5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~--d~~~~~~~~~~~~~~~v~~i~-~~~~~~~~a~N~g~~~a~   81 (249)
T cd02525           5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGST--DGTREIVQEYAAKDPRIRLID-NPKRIQSAGLNIGIRNSR   81 (249)
T ss_pred             EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCC--ccHHHHHHHHHhcCCeEEEEe-CCCCCchHHHHHHHHHhC
Confidence            4555555 778888999976654    36777654332  233444443221112344443 234566677777777776


Q ss_pred             CCcEEEEeCCcccCCC-hHHHHHHHHhcCCeE
Q 017849          103 AKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVV  133 (365)
Q Consensus       103 ~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~  133 (365)
                      .+.++++.+|.+...+ +..+++.+...+.++
T Consensus        82 ~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~  113 (249)
T cd02525          82 GDIIIRVDAHAVYPKDYILELVEALKRTGADN  113 (249)
T ss_pred             CCEEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence            6788999999655444 778887666555544

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=90.59  E-value=5.7  Score=33.77  Aligned_cols=103  Identities=17%  Similarity=0.116  Sum_probs=61.5

Q ss_pred             ceeCC-c-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849           29 LPVAN-R-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (365)
Q Consensus        29 lpv~g-k-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~  104 (365)
                      +|.-| . ..|..+|+.+.+.-..  +|+|+-+... ...+...+.........+.++..+...|.+.++-.+.+....+
T Consensus         7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~-d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d   85 (202)
T cd04184           7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDAST-DPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELATGE   85 (202)
T ss_pred             EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC-ChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhcCC
Confidence            44433 4 7788888888765433  6666654321 1123333332111112355555566678888888887777667


Q ss_pred             cEEEEeCCcccCCC-hHHHHHHH-HhcCCe
Q 017849          105 DVLVVSGDLVSDVP-PGAVTAAH-RRHDAV  132 (365)
Q Consensus       105 ~~lv~~~D~i~~~~-l~~~l~~h-~~~~a~  132 (365)
                      .++++.+|.+...+ +..+++.+ ...+.+
T Consensus        86 ~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~  115 (202)
T cd04184          86 FVALLDHDDELAPHALYEVVKALNEHPDAD  115 (202)
T ss_pred             EEEEECCCCcCChHHHHHHHHHHHhCCCCC
Confidence            78889999666544 77888776 333443

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=89.26  E-value=9.3  Score=35.22  Aligned_cols=101  Identities=16%  Similarity=0.055  Sum_probs=63.1

Q ss_pred             ceeCCc--chHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHHhhh--cCCcceEEEEcCCCCChHHHHHHHHHH
Q 017849           29 LPVANR--PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAY--VDRLHVEVATVPEDVGTAGALRAIAHH  100 (365)
Q Consensus        29 lpv~gk--plI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~--~~~~~v~i~~~~~~~gt~~al~~~~~~  100 (365)
                      +|.-|.  ..|..+|+.+....-    .+|+||-+...  +...+.+....  .....+.++..+...|-+.+.-.+++.
T Consensus         4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~--d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~   81 (299)
T cd02510           4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSD--KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARA   81 (299)
T ss_pred             EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC--chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            455554  488888998865432    37777765332  12222221100  011246676666678888888778777


Q ss_pred             cCCCcEEEEeCCcccCC-ChHHHHHHHHhcCC
Q 017849          101 LTAKDVLVVSGDLVSDV-PPGAVTAAHRRHDA  131 (365)
Q Consensus       101 i~~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a  131 (365)
                      ...+.++++++|.+... -+..+++...+...
T Consensus        82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~  113 (299)
T cd02510          82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRK  113 (299)
T ss_pred             ccCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence            77788999999976544 48888888766544

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>PRK10073 putative glycosyl transferase; Provisional

Probab=88.95  E-value=5.3  Score=37.65  Aligned_cols=105  Identities=17%  Similarity=0.105  Sum_probs=65.1

Q ss_pred             eceeCCc-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849           28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~  104 (365)
                      .+|+-|. ..|..+|+.+......  +|+|+-....  +...+.+..+......+.++.+ +..|.+.|.-.+++....+
T Consensus        11 IIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgSt--D~t~~i~~~~~~~~~~i~vi~~-~n~G~~~arN~gl~~a~g~   87 (328)
T PRK10073         11 IIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGST--DNSVEIAKHYAENYPHVRLLHQ-ANAGVSVARNTGLAVATGK   87 (328)
T ss_pred             EEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCC--ccHHHHHHHHHhhCCCEEEEEC-CCCChHHHHHHHHHhCCCC
Confidence            4666665 7999999999876543  5666643221  1222333322111123555543 4578888877788877778


Q ss_pred             cEEEEeCCcc-cCCChHHHHHHHHhcCCeEEE
Q 017849          105 DVLVVSGDLV-SDVPPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus       105 ~~lv~~~D~i-~~~~l~~~l~~h~~~~a~~t~  135 (365)
                      +++++.+|-. .+.-+..+++...+.+.++.+
T Consensus        88 yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~  119 (328)
T PRK10073         88 YVAFPDADDVVYPTMYETLMTMALEDDLDVAQ  119 (328)
T ss_pred             EEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence            8999999954 444577788777666666654

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=88.61  E-value=6.3  Score=33.01  Aligned_cols=102  Identities=22%  Similarity=0.205  Sum_probs=57.3

Q ss_pred             ceeCCc-chHHHHHHHHHhC-----CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849           29 LPVANR-PVLSYVLEQLELS-----NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (365)
Q Consensus        29 lpv~gk-plI~~~L~~l~~~-----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~  102 (365)
                      +|.-|. ..|..+|+.+...     ..-+|+|+-+...  +...+.++........+.++......|.+.++..++....
T Consensus         3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a~   80 (181)
T cd04187           3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGST--DRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHAR   80 (181)
T ss_pred             EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCC--ccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhcC
Confidence            444444 3455555554321     2236777755322  1222333322111123555555556788899988888777


Q ss_pred             CCcEEEEeCCcccCCC-hHHHHHHHHhcCCeE
Q 017849          103 AKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVV  133 (365)
Q Consensus       103 ~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~  133 (365)
                      .+.++++.+|.....+ +..+++. .+.+.++
T Consensus        81 ~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~  111 (181)
T cd04187          81 GDAVITMDADLQDPPELIPEMLAK-WEEGYDV  111 (181)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcE
Confidence            7889999999766544 6777776 3444444

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=88.53  E-value=7.6  Score=32.63  Aligned_cols=95  Identities=18%  Similarity=0.081  Sum_probs=58.3

Q ss_pred             ceeCCc-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCc
Q 017849           29 LPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD  105 (365)
Q Consensus        29 lpv~gk-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~  105 (365)
                      +|.-|+ ..|..+|+.+.+....  +|+|+-+...  +...+.+.... .  .+..+......|.+.++..+++....+.
T Consensus         4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~--d~~~~~~~~~~-~--~~~~~~~~~~~g~~~a~n~~~~~a~~~~   78 (202)
T cd06433           4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGST--DGTVDIIKKYE-D--KITYWISEPDKGIYDAMNKGIALATGDI   78 (202)
T ss_pred             EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCC--ccHHHHHHHhH-h--hcEEEEecCCcCHHHHHHHHHHHcCCCE
Confidence            455454 6889999999776554  5666643221  23334444321 1  1223333456788888888888877778


Q ss_pred             EEEEeCCccc-CCChHHHHHHHHh
Q 017849          106 VLVVSGDLVS-DVPPGAVTAAHRR  128 (365)
Q Consensus       106 ~lv~~~D~i~-~~~l~~~l~~h~~  128 (365)
                      ++++.+|.+. +..+..++.....
T Consensus        79 v~~ld~D~~~~~~~~~~~~~~~~~  102 (202)
T cd06433          79 IGFLNSDDTLLPGALLAVVAAFAE  102 (202)
T ss_pred             EEEeCCCcccCchHHHHHHHHHHh
Confidence            8999998644 4557777744443

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=87.44  E-value=9.3  Score=37.63  Aligned_cols=100  Identities=17%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             eeceeCCc-chHHHHHHHHHhCCC--CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849           27 ALLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (365)
Q Consensus        27 ~llpv~gk-plI~~~L~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~  103 (365)
                      -++|.-|. ..|..+++.+.+..-  -+|+|+.+...  +...+.+.+.......+.++..+...|-+.++..+......
T Consensus        79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~--D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl~~a~~  156 (444)
T PRK14583         79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSS--DDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGAAAARS  156 (444)
T ss_pred             EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHHHhCCC
Confidence            56788887 778899999876643  36777754322  12223332221111246666555667888899888877767


Q ss_pred             CcEEEEeCCcccCCC-hHHHHHHHHh
Q 017849          104 KDVLVVSGDLVSDVP-PGAVTAAHRR  128 (365)
Q Consensus       104 ~~~lv~~~D~i~~~~-l~~~l~~h~~  128 (365)
                      +.++++.+|.+.+.+ +..+++.+.+
T Consensus       157 d~iv~lDAD~~~~~d~L~~lv~~~~~  182 (444)
T PRK14583        157 EYLVCIDGDALLDKNAVPYLVAPLIA  182 (444)
T ss_pred             CEEEEECCCCCcCHHHHHHHHHHHHh
Confidence            789999999776655 6777766644

>PRK11204 N-glycosyltransferase; Provisional

Probab=87.14  E-value=8.2  Score=37.55  Aligned_cols=99  Identities=17%  Similarity=0.229  Sum_probs=63.5

Q ss_pred             eceeCCc-chHHHHHHHHHhCCC--CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849           28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~  104 (365)
                      ++|.-|. ..|..+++.+.+...  -+|+|+-+...  +...+.++........+.++..++..|-++++..+.+....+
T Consensus        59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~--d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~~a~~d  136 (420)
T PRK11204         59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSS--DNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAAAARSE  136 (420)
T ss_pred             EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            5676676 789999999877653  36666654321  122233322111112366665456678889999888877777


Q ss_pred             cEEEEeCCcccCCC-hHHHHHHHHh
Q 017849          105 DVLVVSGDLVSDVP-PGAVTAAHRR  128 (365)
Q Consensus       105 ~~lv~~~D~i~~~~-l~~~l~~h~~  128 (365)
                      .++++.+|.+...+ +..+++.+.+
T Consensus       137 ~i~~lDaD~~~~~d~L~~l~~~~~~  161 (420)
T PRK11204        137 YLVCIDGDALLDPDAAAYMVEHFLH  161 (420)
T ss_pred             EEEEECCCCCCChhHHHHHHHHHHh
Confidence            89999999766554 7777777654

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=86.93  E-value=12  Score=36.91  Aligned_cols=99  Identities=16%  Similarity=0.109  Sum_probs=62.1

Q ss_pred             eceeCCc-chHHHHHHHHHhCCCC----eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849           28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~  102 (365)
                      ++|.-|. ..|..+++.+.+....    +|+|+-+...  +...+.+++.......+.+...+...|-+.|+-.+.+...
T Consensus        54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~St--D~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~~s~  131 (439)
T TIGR03111        54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQST--DDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNSI  131 (439)
T ss_pred             EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCC--hhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHcc
Confidence            4676665 8899999999776542    4666544221  2223333221111123444444556788899999988777


Q ss_pred             CCcEEEEeCCcccCCC-hHHHHHHHHh
Q 017849          103 AKDVLVVSGDLVSDVP-PGAVTAAHRR  128 (365)
Q Consensus       103 ~~~~lv~~~D~i~~~~-l~~~l~~h~~  128 (365)
                      .+.++++.+|.+.+.+ +..+++.+.+
T Consensus       132 g~~v~~~DaD~~~~~d~L~~l~~~f~~  158 (439)
T TIGR03111       132 GKYIIHIDSDGKLHKDAIKNMVTRFEN  158 (439)
T ss_pred             CCEEEEECCCCCcChHHHHHHHHHHHh
Confidence            7789999999776655 6777777754

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=86.82  E-value=8.9  Score=34.10  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=61.4

Q ss_pred             eceeCCc-chHHHHHHHHHhC----CCCeEEEEecCcchHHHHHHHHHhhhcC--CcceEEEEcCCCCChHHHHHHHHHH
Q 017849           28 LLPVANR-PVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVD--RLHVEVATVPEDVGTAGALRAIAHH  100 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~--~~~v~i~~~~~~~gt~~al~~~~~~  100 (365)
                      .+|.-|. .-|..+++.+.+.    .--+|+|+-+...  +...+.+..+...  ...+.++..+...|-+.++..+...
T Consensus        14 vIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~--D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~   91 (243)
T PLN02726         14 IVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSP--DGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKH   91 (243)
T ss_pred             EEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCC--CCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHH
Confidence            4555554 5666666666432    1126666654221  1223333322110  1234444445567888888888877


Q ss_pred             cCCCcEEEEeCCcccCC-ChHHHHHHHHhcCCeEEE
Q 017849          101 LTAKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus       101 i~~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~t~  135 (365)
                      ...+.++++.+|...+. .+..+++...+.++++..
T Consensus        92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~  127 (243)
T PLN02726         92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT  127 (243)
T ss_pred             cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence            76778999999976554 477888777666666544

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=85.68  E-value=17  Score=31.84  Aligned_cols=98  Identities=16%  Similarity=0.172  Sum_probs=55.2

Q ss_pred             eceeCCc-chHHHHHHHHHhCCCC----eEEEEecCcchH-HHHHHHHHhhhcCCcceEEEEcCCCCC-hHHHHHHHHHH
Q 017849           28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAA-LRVGGWISAAYVDRLHVEVATVPEDVG-TAGALRAIAHH  100 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi~----~v~vv~~~~~~~-~~i~~~~~~~~~~~~~v~i~~~~~~~g-t~~al~~~~~~  100 (365)
                      .+|.-|. ..|..+|+.+.+....    +|+|+-+..+.. +.+.++...+......+..+...+..| .+.++..+.+.
T Consensus         6 iIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~   85 (232)
T cd06437           6 QLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKV   85 (232)
T ss_pred             EEecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHh
Confidence            4566565 7889999999765432    454543322211 122333332211122344444344455 46777777777


Q ss_pred             cCCCcEEEEeCCcccCCC-hHHHHHH
Q 017849          101 LTAKDVLVVSGDLVSDVP-PGAVTAA  125 (365)
Q Consensus       101 i~~~~~lv~~~D~i~~~~-l~~~l~~  125 (365)
                      ...+.++++.+|.+...+ +..+...
T Consensus        86 a~~~~i~~~DaD~~~~~~~l~~~~~~  111 (232)
T cd06437          86 AKGEYVAIFDADFVPPPDFLQKTPPY  111 (232)
T ss_pred             CCCCEEEEEcCCCCCChHHHHHhhhh
Confidence            777889999999776654 5554433

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>PRK10018 putative glycosyl transferase; Provisional

Probab=85.34  E-value=23  Score=32.50  Aligned_cols=99  Identities=9%  Similarity=0.083  Sum_probs=62.4

Q ss_pred             eceeCCc-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849           28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~  104 (365)
                      .+|.-|. ..|..+|+.+.+....  +++|+-+.....+.+.++.... . ...+.++..+...|.+.+.-.+++....+
T Consensus        10 Iip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~-~-~~ri~~i~~~~n~G~~~a~N~gi~~a~g~   87 (279)
T PRK10018         10 YMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTAL-N-DPRITYIHNDINSGACAVRNQAIMLAQGE   87 (279)
T ss_pred             EEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHc-C-CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            3565565 7788899888766543  5666644222112344444431 1 12466666566788888888888877778


Q ss_pred             cEEEEeCCcccC-CChHHHHHHHHh
Q 017849          105 DVLVVSGDLVSD-VPPGAVTAAHRR  128 (365)
Q Consensus       105 ~~lv~~~D~i~~-~~l~~~l~~h~~  128 (365)
                      .++++.+|.+.. ..+..+++...+
T Consensus        88 ~I~~lDaDD~~~p~~l~~~~~~~~~  112 (279)
T PRK10018         88 YITGIDDDDEWTPNRLSVFLAHKQQ  112 (279)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHh
Confidence            899999996554 447777776543

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=84.44  E-value=15  Score=31.69  Aligned_cols=102  Identities=14%  Similarity=0.117  Sum_probs=58.5

Q ss_pred             eceeCCc-chHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHH-hhhcCCcceEEEEcC--CCCChHHHHHHHHH
Q 017849           28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWIS-AAYVDRLHVEVATVP--EDVGTAGALRAIAH   99 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~-~~~~~~~~v~i~~~~--~~~gt~~al~~~~~   99 (365)
                      ++|..|+ ..|..+|+.+.....    -+|+|+-+...  +...+.+. ........+.++..+  ...|-+.++..+..
T Consensus         2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~   79 (229)
T cd04192           2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHST--DGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIK   79 (229)
T ss_pred             EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC--cChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHH
Confidence            4566666 678899999866532    35666654321  12223332 110111234444333  23566677777777


Q ss_pred             HcCCCcEEEEeCCcccCCC-hHHHHHHHHhcCC
Q 017849          100 HLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDA  131 (365)
Q Consensus       100 ~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a  131 (365)
                      ....+.++++.+|.+...+ ++.+++.+...+.
T Consensus        80 ~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~  112 (229)
T cd04192          80 AAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQI  112 (229)
T ss_pred             HhcCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence            6666789999999766544 6777776655443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=84.39  E-value=0.3  Score=29.47  Aligned_cols=22  Identities=14%  Similarity=0.347  Sum_probs=14.0

Q ss_pred             CCCCccCCCceeCCcccccCCC
Q 017849          343 AQNNIIHPSAELGSKTTVSSSL  364 (365)
Q Consensus       343 ~~~~~i~~~~~i~~~~~ig~~~  364 (365)
                      ..++.|.++|.||+++.||+++
T Consensus        11 ~~~~~i~~~~~Ig~~~~I~~~~   32 (36)
T PF00132_consen   11 GPNAVIGGGVVIGDNCVIGPGV   32 (36)
T ss_dssp             ETTEEEETTEEE-TTEEEETTE
T ss_pred             CCCcEecCCCEECCCCEEcCCC
Confidence            3455667777777777777764

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=83.34  E-value=21  Score=31.16  Aligned_cols=96  Identities=21%  Similarity=0.190  Sum_probs=60.3

Q ss_pred             eceeCC-c-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCc
Q 017849           28 LLPVAN-R-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD  105 (365)
Q Consensus        28 llpv~g-k-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~  105 (365)
                      ++|.-| . +.|..+|+.+.+....+|+|+.....  +...+.+.... ....+.+.. ....|-+.++..++.....+.
T Consensus         5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~--d~~~~~l~~~~-~~~~~~v~~-~~~~g~~~a~n~g~~~a~~d~   80 (235)
T cd06434           5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDD--EPYLSILSQTV-KYGGIFVIT-VPHPGKRRALAEGIRHVTTDI   80 (235)
T ss_pred             EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCC--hHHHHHHHhhc-cCCcEEEEe-cCCCChHHHHHHHHHHhCCCE
Confidence            345444 3 68999999997765567777766432  23333332211 112343443 345677788877777776778


Q ss_pred             EEEEeCCcccCCC-hHHHHHHHH
Q 017849          106 VLVVSGDLVSDVP-PGAVTAAHR  127 (365)
Q Consensus       106 ~lv~~~D~i~~~~-l~~~l~~h~  127 (365)
                      ++++.+|.+...+ +..+++.+.
T Consensus        81 v~~lD~D~~~~~~~l~~l~~~~~  103 (235)
T cd06434          81 VVLLDSDTVWPPNALPEMLKPFE  103 (235)
T ss_pred             EEEECCCceeChhHHHHHHHhcc
Confidence            9999999766655 777777765

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]

Probab=83.17  E-value=26  Score=30.18  Aligned_cols=106  Identities=13%  Similarity=0.168  Sum_probs=65.0

Q ss_pred             CcchHHHHHHHH-HhCCCC-eEEEEecC-cchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEE
Q 017849           33 NRPVLSYVLEQL-ELSNIK-DLIVVVEG-ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV  109 (365)
Q Consensus        33 gkplI~~~L~~l-~~~gi~-~v~vv~~~-~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~  109 (365)
                      |-|++-|.+..+ .+.|.+ +++++-.. .+-...+.+.+...++. .++.+..-....|.+.|...++.+...+.++++
T Consensus        17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~-d~i~l~pR~~klGLgtAy~hgl~~a~g~fiviM   95 (238)
T KOG2978|consen   17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE-DNILLKPRTKKLGLGTAYIHGLKHATGDFIVIM   95 (238)
T ss_pred             CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC-CcEEEEeccCcccchHHHHhhhhhccCCeEEEE
Confidence            447777777776 455665 45555331 11112333444433321 245454445668888888999888876778888


Q ss_pred             eCCcccC-CChHHHHHHHHhcCCeEEEEEee
Q 017849          110 SGDLVSD-VPPGAVTAAHRRHDAVVTAMICS  139 (365)
Q Consensus       110 ~~D~i~~-~~l~~~l~~h~~~~a~~t~l~~~  139 (365)
                      .+|+-.. .-+.++++..++.+-+++..++-
T Consensus        96 DaDlsHhPk~ipe~i~lq~~~~~div~GTRY  126 (238)
T KOG2978|consen   96 DADLSHHPKFIPEFIRLQKEGNYDIVLGTRY  126 (238)
T ss_pred             eCccCCCchhHHHHHHHhhccCcceeeeeeE
Confidence            9997543 44678888877766677766543

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=82.72  E-value=21  Score=33.66  Aligned_cols=108  Identities=18%  Similarity=0.215  Sum_probs=61.7

Q ss_pred             ceeCCc-chHHHHHHHHHhC----------CCCeEEEEecCc-chHHHH-HHHHHhhhcCCcceEEEEcCCCCChHHHHH
Q 017849           29 LPVANR-PVLSYVLEQLELS----------NIKDLIVVVEGA-DAALRV-GGWISAAYVDRLHVEVATVPEDVGTAGALR   95 (365)
Q Consensus        29 lpv~gk-plI~~~L~~l~~~----------gi~~v~vv~~~~-~~~~~i-~~~~~~~~~~~~~v~i~~~~~~~gt~~al~   95 (365)
                      +|.-|. +-|..+|+.+.+.          +--+|+||-+.. +....+ .++.........++.++..+...|.+.|+.
T Consensus        76 IP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~  155 (333)
T PTZ00260         76 IPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVR  155 (333)
T ss_pred             EeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHH
Confidence            565564 6677777766431          124677775422 211122 222221100112466666566789999999


Q ss_pred             HHHHHcCCCcEEEEeCCcccC-CChHHHHHHHHh---cCCeEEEE
Q 017849           96 AIAHHLTAKDVLVVSGDLVSD-VPPGAVTAAHRR---HDAVVTAM  136 (365)
Q Consensus        96 ~~~~~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~---~~a~~t~l  136 (365)
                      .+......+.++++.+|...+ .++..+++...+   .+.++.+.
T Consensus       156 ~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~G  200 (333)
T PTZ00260        156 IGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFG  200 (333)
T ss_pred             HHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEe
Confidence            888776667789999997655 456667666543   45554443

>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]

Probab=82.63  E-value=1.4  Score=42.92  Aligned_cols=38  Identities=29%  Similarity=0.547  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCC---cchHHHHHHHH
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN---RPVLSYVLEQL   44 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~g---kplI~~~L~~l   44 (365)
                      ..++++|||.|||+    ....||.+.+++-   +.++++..+.+
T Consensus        98 ~a~~llaGgqgtRL----g~~~pkg~~~~G~~~~~slf~~qae~i  138 (477)
T KOG2388|consen   98 VAVVLLAGGQGTRL----GSSGPKGCYPIGLPSGKSLFQIQAERI  138 (477)
T ss_pred             ceEEEeccCceeee----ccCCCcceeecCCccccchhhhhHHHH
Confidence            46899999999999    7889999999984   45777665554

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=81.79  E-value=21  Score=32.49  Aligned_cols=96  Identities=14%  Similarity=0.097  Sum_probs=58.8

Q ss_pred             chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHc---CCCcEEEEeC
Q 017849           35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---TAKDVLVVSG  111 (365)
Q Consensus        35 plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i---~~~~~lv~~~  111 (365)
                      ..|..+++.+.+. ..+|+||=+.....+.+.+.+..    ...+.++..++..|-+.|...+++..   ..+.++++..
T Consensus         8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~   82 (281)
T TIGR01556         8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQ   82 (281)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECC
Confidence            4677778887765 45777775542111234433332    12466776667789888888877655   3467999999


Q ss_pred             CcccCCC-hHHHHHHHHhcCCeEEE
Q 017849          112 DLVSDVP-PGAVTAAHRRHDAVVTA  135 (365)
Q Consensus       112 D~i~~~~-l~~~l~~h~~~~a~~t~  135 (365)
                      |.+...+ +..+++...+.+..+.+
T Consensus        83 D~~~~~~~l~~l~~~~~~~~~~~~~  107 (281)
T TIGR01556        83 DSRPGNAFLAAQWKLLSAENGQACA  107 (281)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCceEE
Confidence            9766544 66777766544323333

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=81.63  E-value=30  Score=28.97  Aligned_cols=99  Identities=23%  Similarity=0.215  Sum_probs=58.1

Q ss_pred             eceeCCc-chHHHHHHHHHhCCC----CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849           28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~  102 (365)
                      ++|.-|. ..|.-+|+.+.+...    -+|+|+.....  +...+.+... .  ..+.........|.+.++..+.....
T Consensus         2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~--D~t~~~~~~~-~--~~~~~~~~~~~~gk~~aln~g~~~a~   76 (183)
T cd06438           2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT--DDTAQVARAA-G--ATVLERHDPERRGKGYALDFGFRHLL   76 (183)
T ss_pred             EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC--chHHHHHHHc-C--CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            4666665 788888888876543    35666655332  2333444332 1  11212112334677888887766542


Q ss_pred             -----CCcEEEEeCCcccCCC-hHHHHHHHHhcCCe
Q 017849          103 -----AKDVLVVSGDLVSDVP-PGAVTAAHRRHDAV  132 (365)
Q Consensus       103 -----~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~  132 (365)
                           .+.++++.+|...+.+ +..++..+.. +.+
T Consensus        77 ~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~  111 (183)
T cd06438          77 NLADDPDAVVVFDADNLVDPNALEELNARFAA-GAR  111 (183)
T ss_pred             hcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCC
Confidence                 4568899999766654 6777777654 443

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=81.42  E-value=29  Score=30.25  Aligned_cols=97  Identities=16%  Similarity=0.180  Sum_probs=57.3

Q ss_pred             eceeCCc-c-hHHHHHHHHHhCCC--CeEEEEecCcchH---HHHHHHHHhhhcCCcceEEEEcCCCCCh-HHHHHHHHH
Q 017849           28 LLPVANR-P-VLSYVLEQLELSNI--KDLIVVVEGADAA---LRVGGWISAAYVDRLHVEVATVPEDVGT-AGALRAIAH   99 (365)
Q Consensus        28 llpv~gk-p-lI~~~L~~l~~~gi--~~v~vv~~~~~~~---~~i~~~~~~~~~~~~~v~i~~~~~~~gt-~~al~~~~~   99 (365)
                      ++|.-|. + +|..+|+.+.+...  -+|+|+-+.....   +.+.++....   ...+.++......|- ++++..+.+
T Consensus         3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~---~~~i~~i~~~~~~G~~~~a~n~g~~   79 (236)
T cd06435           3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL---GERFRFFHVEPLPGAKAGALNYALE   79 (236)
T ss_pred             eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh---CCcEEEEEcCCCCCCchHHHHHHHH
Confidence            4677675 3 79999999987653  3666665433211   1122333221   123445544444553 777877777


Q ss_pred             HcC--CCcEEEEeCCcccCCC-hHHHHHHHH
Q 017849          100 HLT--AKDVLVVSGDLVSDVP-PGAVTAAHR  127 (365)
Q Consensus       100 ~i~--~~~~lv~~~D~i~~~~-l~~~l~~h~  127 (365)
                      ...  .+.++++.+|.+.+.+ +..++....
T Consensus        80 ~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~  110 (236)
T cd06435          80 RTAPDAEIIAVIDADYQVEPDWLKRLVPIFD  110 (236)
T ss_pred             hcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence            654  3678999999655544 777777664

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=81.21  E-value=18  Score=30.77  Aligned_cols=96  Identities=14%  Similarity=0.101  Sum_probs=58.1

Q ss_pred             eceeCCc-chHHHHHHHHHhCCC--CeEEEEecCcchHHHHHHHHHhhhcC-CcceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849           28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVD-RLHVEVATVPEDVGTAGALRAIAHHLTA  103 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~-~~~v~i~~~~~~~gt~~al~~~~~~i~~  103 (365)
                      ++|.-|+ ..|..+|+.+.+...  -+|+|+-+...  +...+.++.+... ...+.+...+...|.+.++..+......
T Consensus         3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~--d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g   80 (214)
T cd04196           3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGST--DGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADG   80 (214)
T ss_pred             EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC--CCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCC
Confidence            4566666 688899999876643  35666654321  1222333322111 1123444445567888888888776666


Q ss_pred             CcEEEEeCCcccC-CChHHHHHH
Q 017849          104 KDVLVVSGDLVSD-VPPGAVTAA  125 (365)
Q Consensus       104 ~~~lv~~~D~i~~-~~l~~~l~~  125 (365)
                      +.++++..|.+.. ..+..+++.
T Consensus        81 ~~v~~ld~Dd~~~~~~l~~~~~~  103 (214)
T cd04196          81 DYVFFCDQDDIWLPDKLERLLKA  103 (214)
T ss_pred             CEEEEECCCcccChhHHHHHHHH
Confidence            7888999885554 447777776

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=81.17  E-value=26  Score=29.69  Aligned_cols=96  Identities=18%  Similarity=0.232  Sum_probs=56.4

Q ss_pred             ceeCCc-chHHHHHHHHHhCCC--CeEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHc---C
Q 017849           29 LPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---T  102 (365)
Q Consensus        29 lpv~gk-plI~~~L~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i---~  102 (365)
                      +|.-|+ ..|..+|+.+.+...  .+|+|+-+...  +...+.+.... ...++.++..+...|.+.++..+.+..   .
T Consensus         3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~--d~t~~~~~~~~-~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~   79 (202)
T cd04185           3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNAST--DGTAEWLTSLG-DLDNIVYLRLPENLGGAGGFYEGVRRAYELG   79 (202)
T ss_pred             EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCC--cchHHHHHHhc-CCCceEEEECccccchhhHHHHHHHHHhccC
Confidence            344444 688999999977643  36666654321  24445554431 122355665566677776666555433   2


Q ss_pred             CCcEEEEeCCcccCCC-hHHHHHHHH
Q 017849          103 AKDVLVVSGDLVSDVP-PGAVTAAHR  127 (365)
Q Consensus       103 ~~~~lv~~~D~i~~~~-l~~~l~~h~  127 (365)
                      .+.++++..|.+...+ +..+++...
T Consensus        80 ~d~v~~ld~D~~~~~~~l~~l~~~~~  105 (202)
T cd04185          80 YDWIWLMDDDAIPDPDALEKLLAYAD  105 (202)
T ss_pred             CCEEEEeCCCCCcChHHHHHHHHHHh
Confidence            4568888899776654 566666554

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
1lvw_A	295	Crystal Structure Of Glucose-1-phosphate Thymidylyl		5e-05
3pkp_A	292	Q83s Variant Of S. Enterica Rmla With Datp Length =		1e-04
1h5t_A	293	Thymidylyltransferase Complexed With Thymidylyldiph		1e-04
1h5r_B	293	Thymidylyltransferase Complexed With Thimidine And		1e-04
3pkq_A	292	Q83d Variant Of S. Enterica Rmla With Dgtp Length =		1e-04
1h5s_A	293	Thymidylyltransferase Complexed With Tmp Length = 2		1e-04
1h5s_D	293	Thymidylyltransferase Complexed With Tmp Length = 2		1e-04
1mp3_A	292	L89t Variant Of S. Enterica Rmla Length = 292		2e-04
1mp4_A	292	W224h Variant Of S. Enterica Rmla Length = 292		2e-04
1mp5_A	292	Y177f Variant Of S. Enterica Rmla Length = 292		3e-04
1iim_A	292	Thymidylyltransferase Complexed With Ttp Length = 2		3e-04

>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
          +VLAGG+  +L P +++ V K LLP+ ++P++ Y L  L L+ I+D++++    D  L
Sbjct: 7  IVLAGGSGTRLYP-ITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63

>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	1e-15
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	6e-15
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	2e-13
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	3e-13
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	1e-12
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	3e-09
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	2e-07
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	2e-07
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	3e-07
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	7e-07
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	8e-07
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	9e-07
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	1e-06
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	3e-06
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	3e-06
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	5e-06
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	8e-06
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	4e-05
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	5e-05
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	7e-05
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	7e-05
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	8e-05
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	9e-05
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	1e-04
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	3e-04

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           +  + ++LA G   +L PL ++  PKAL+ V  +P++ Y +E L+   I D+I++V    
Sbjct: 24  IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIV---- 78

Query: 61  AALRVGGWIS---AAYVDRLHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGDLVS 115
                 G++        ++  V +    +        +L  +   L     ++ + + + 
Sbjct: 79  ------GYLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA-NSYVIDADNYLF 131

Query: 116 D 116
            
Sbjct: 132 K 132

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196

 Score = 71.7 bits (176), Expect = 6e-15
 Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 13/134 (9%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVE-GADAA 62
             +++AGG   ++  +      K L+ +  R ++ YV+  L  S + ++ +         
Sbjct: 2   DALIMAGGKGTRMGGV-----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKT 56

Query: 63  LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPG 120
                     Y + + ++        G    L     +  ++  LVVS D   +      
Sbjct: 57  KEYINSAYKDYKNIVVID----TSGKGYIEDLNECIGYF-SEPFLVVSSDLINLKSKIIN 111

Query: 121 AVTAAHRRHDAVVT 134
           ++        A   
Sbjct: 112 SIVDYFYCIKAKTP 125

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 33/174 (18%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + V+LA G   +L       VPK L+ V    ++   ++ L   ++ + I+V        
Sbjct: 20  KAVILAAGLGTRL-----GGVPKPLVRVGGCEIILRTMKLLS-PHVSEFIIVA------- 66

Query: 64  RVGGW----ISAAYVDR-LHVEVATVPE-DVGTAGALRAIAHHLTAKDVLVVSGDLVSDV 117
                    I A   D+  + ++      + G   +L    +H+     ++  GD V   
Sbjct: 67  ---SRYADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVE-DRFILTMGDHVYSQ 122

Query: 118 PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT-----KKPGRYNII 166
                     R + V+           + EA     +D       K    ++ +
Sbjct: 123 ---QFIEKAVRGEGVIA--DREPRFVDIGEATKIRVEDGRVAKIGKDLREFDCV 171

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 23/138 (16%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           +  +LA G+ ++L P+     PKA +P+ ++P++ Y +E L    I+D+ V+V       
Sbjct: 2   KAFILAAGSGERLEPITHT-RPKAFVPILSKPLIEYQIEYLRKCGIRDITVIV------- 53

Query: 64  RVGGWISAAYVDRLHVEVATVPED---VGTAGALRAIAHHLTAK---DVLVVSGDLVSDV 117
                 +  Y ++   E++ V +     GT  A+ +      AK   + L++ GDL    
Sbjct: 54  ---SSKNKEYFEKKLKEISIVTQKDDIKGTGAAILS------AKFNDEALIIYGDLFFSN 104

Query: 118 PPGAVTAAHRRHDAVVTA 135
                     + +A++  
Sbjct: 105 EKEICNIITLKENAIIGV 122

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 21/137 (15%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M    +VLAGG  K+          KAL+P   RP++ +VLE L  + +   + V E   
Sbjct: 1   MRPSAIVLAGG--KEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGENPG 57

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVP 118
                                 T+P+  G    L     H+    VLV +GD   +++  
Sbjct: 58  LV---------------PAPALTLPDRGGLLENLEQALEHVEG-RVLVATGDIPHLTEEA 101

Query: 119 PGAVTAAHRRHDAVVTA 135
              V         V   
Sbjct: 102 VRFVLDKAPEAALVYPI 118

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            VVLA G S +L        PK LLP  +  VL   L+    +    LI+ + G  A+  
Sbjct: 8   GVVLAAGRSNRL------GTPKQLLPYRDTTVLGATLDVARQAGFDQLILTL-GGAASAV 60

Query: 65  VGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHL--TAKDVLVVSGD--LVSDVPP 119
                  A +     +V  V + + G A +LR     +   A  ++++ GD   V+    
Sbjct: 61  ------RAAMALDGTDVVVVEDVERGCAASLRVALARVHPRATGIVLMLGDQPQVAPATL 114

Query: 120 GAVTAAHRRHDAVVTA 135
             +       + +V  
Sbjct: 115 RRIIDVGPATEIMVCR 130

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)

Query: 1   MDFQVVVL-AG-GT---SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
            D  V+VL AG GT   S           PK L  +A R +LS+VL  +     + LIVV
Sbjct: 11  GDTAVLVLAAGPGTRMRSDT---------PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVV 61

Query: 56  V-EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK---DVLVVSG 111
           +         + G ++        ++VA     +GT  A+      L      +V+V SG
Sbjct: 62  LGHDHQRIAPLVGELADTLGRT--IDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSG 119

Query: 112 D--LVSDVPPGAVTAAHRRHDAVVT 134
           D  L+       + A HR   A VT
Sbjct: 120 DTPLLDADTLADLIATHRAVSAAVT 144

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 18/134 (13%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            VVLA G S++L        PK LLP+ +  +L   L          LIV + G  A   
Sbjct: 8   GVVLAAGYSRRL------GTPKQLLPLGDTTLLGATLAMARRCPFDQLIVTL-GGAADEV 60

Query: 65  VGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHL--TAKDVLVVSGD--LVSDVPP 119
                    V+   +++  V +  +G + +L++    +  TA+ ++++ GD   ++    
Sbjct: 61  ------LEKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAV 114

Query: 120 GAVTAAHRRHDAVV 133
            ++ A  R     V
Sbjct: 115 ASLIAGGRGATIAV 128

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 26/142 (18%)

Query: 1   MDFQVVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
                V+LA G      S           PK L  +A +P++ +V++       +++ ++
Sbjct: 4   KALSAVILAAGKGTRMYSDL---------PKVLHTIAGKPMVKHVIDTAHQLGSENIHLI 54

Query: 56  V-EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD- 112
              G D            ++    V      E +GTA A++  A       +++V+ GD 
Sbjct: 55  YGHGGDLM--------RTHLANEQVNWVLQTEQLGTAHAVQQAAPFFKDNENIVVLYGDA 106

Query: 113 -LVSDVPPGAVTAAHRRHDAVV 133
            L++      +  A   +   +
Sbjct: 107 PLITKETLEKLIEAKPENGIAL 128

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236

 Score = 48.7 bits (117), Expect = 7e-07
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 33/155 (21%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
             +LAGGT  ++       +PK  L + +RP+L + +E+  L    + IVV    D    
Sbjct: 5   AGILAGGTGTRMGI---SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSH 61

Query: 65  VGGWISAAYVDRLHVEVATVPEDVG-------TAGALRAIAHHLTAKD---VLV------ 108
               +   Y+      +       G           + AI  +        V+       
Sbjct: 62  AEDLV-DKYLPLYKERIIITK---GGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRP 117

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            ++  ++ D     +  A + HDAV T     V  
Sbjct: 118 FITLRMIQDN----IQLA-QNHDAVDTV----VEA 143

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 49.8 bits (120), Expect = 8e-07
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 28/140 (20%)

Query: 5   VVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EG 58
            ++LA G      S           PK L  VA   +L +V   +     +  + VV   
Sbjct: 14  AIILAAGKGTRMKSDL---------PKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHK 64

Query: 59  ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD--VLVVSGD--LV 114
           A+        +      +   E  T  E +GT  A+      L       LV++GD  L+
Sbjct: 65  AEL-------VEEVLAGQ--TEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLI 115

Query: 115 SDVPPGAVTAAHRRHDAVVT 134
           +      +   H  H  V T
Sbjct: 116 TGESLKNLIDFHINHKNVAT 135

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223

 Score = 48.3 bits (116), Expect = 9e-07
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 37/155 (23%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M    VV A G+ ++L        PKA + +   P+L + L  L  S + D IV+     
Sbjct: 1   MATVAVVPAAGSGERL----RAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIA---- 52

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRA--IAHHLTAKD----VLV------ 108
                   +  A  D   +        + + G  R   +A  L A      VLV      
Sbjct: 53  --------VPPALTDESKLVFGGEDSVIVSGGVDRTESVALALEAAGDAEFVLVHDAARA 104

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
                L++ V    V A    H AVV      +  
Sbjct: 105 LTPPALIARV----VAALKEGHSAVVPG----LAP 131

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 26/142 (18%)

Query: 1   MDFQVVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
               VV+LA G      S           PK L P+A +P++ +V++       + + +V
Sbjct: 7   SSMSVVILAAGKGTRMYSDL---------PKVLHPLAGKPMVQHVIDAAMKLGAQHVHLV 57

Query: 56  V-EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD- 112
              G +             +    +      E +GT  A++  A H     D+L++ GD 
Sbjct: 58  YGHGGELL--------KKTLADPSLNWVLQAEQLGTGHAMQQAAPHFADDEDILMLYGDV 109

Query: 113 -LVSDVPPGAVTAAHRRHDAVV 133
            L+S      + AA       +
Sbjct: 110 PLISVDTLQRLLAAKPEGGIGL 131

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          +V+   G S +         PK +L    + +  + +            + +
Sbjct: 2  IVIPMAGMSSRFFKA-GYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFI 52

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 35/155 (22%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
             +LAGG   ++    +  +PK  LP+  +P++ + +E+  L+   D I++    +    
Sbjct: 6   AQILAGGKGTRMG---NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNH 62

Query: 65  VGGWISAAYVDRLHVEVA-------TVPEDVGTAGALRAIAHHLTAKD---VLV------ 108
               I     D   V +        T+         +R +       D   ++       
Sbjct: 63  AEDNIKKYISDDRIVVIEGGEDRNETI------MNGIRFVEKTYGLTDDDIIVTHDAVRP 116

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            ++  ++ +     + AA     AV T     +  
Sbjct: 117 FLTHRIIEEN----IDAA-LETGAVDTV----IEA 142

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 40/156 (25%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++ A G   +       + PK  + + ++ VL +VL   E     DL VVV   +    
Sbjct: 9   ALIPAAGIGVRF----GADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTF- 63

Query: 65  VGGWISAAYVDRLHVEVAT--------VPEDVGTAGALRAIAHHLTAKD---VLV----- 108
                                      V         +  +     A +   +LV     
Sbjct: 64  ---ADKVQTAFPQVRVWKNGGQTRAETV------RNGVAKLLETGLAAETDNILVHDAAR 114

Query: 109 --VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
             +  + ++ +    +  A    +  + A    VPV
Sbjct: 115 CCLPSEALARL----IEQAGNAAEGGILA----VPV 142

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 43/155 (27%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            +V A G+ ++L    +  VPKA   +  + ++   ++ L  S + D +VV         
Sbjct: 10  AIVPAAGSGERL----AVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVA-------- 57

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAG----------ALRAIAHHLTAKDVLV------ 108
               + A   D     +      V  AG          AL  ++     + VLV      
Sbjct: 58  ----VPADRTDEARQILGHRAMIV--AGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARA 111

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
                LV+ V    V A    + AVV      +P+
Sbjct: 112 LTPPALVARV----VEALRDGYAAVVPV----LPL 138

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 37/152 (24%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           V++LAGG  K++       +PK  +P+  +P+  Y             IVVV        
Sbjct: 7   VILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDI 62

Query: 65  VGGWISAAYVDRLHVEVATVPEDVG-------TAGALRAIAHHLTAKDVLV-------VS 110
                   Y + + V+++                  L+ I  +  ++ V +       V+
Sbjct: 63  F-----EEYEESIDVDLSFAI---PGKERQDSVYSGLQEIDVN--SELVCIHDSARPLVN 112

Query: 111 GDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            + V  V    +        A V      VP 
Sbjct: 113 TEDVEKV----LKDG-SAVGAAVLG----VPA 135

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 44/159 (27%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           +D   VV A G  +++      E PK  L + N+ +L + +  L        +V+     
Sbjct: 6   LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIA---- 57

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAG----------ALRAIAHHLTAKDVLV-- 108
                   IS        + +A  P+     G           L+A      A+ VLV  
Sbjct: 58  --------ISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAG---DAQWVLVHD 106

Query: 109 -----VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
                +  D ++ +    +  +       + A     PV
Sbjct: 107 AARPCLHQDDLARL----LALSETSRTGGILA----APV 137

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Length = 201

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           VVLAGG ++++       V K LL +  +P+  +V + L  + +  ++V         + 
Sbjct: 10  VVLAGGKARRM-----GGVDKGLLELNGKPLWQHVADALM-TQLSHVVVNANRHQEIYQA 63

Query: 66  GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAV--- 122
            G         L V   ++ +  G    + ++      +  L    D    +PP      
Sbjct: 64  SG---------LKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTP-YIPPDLAARL 113

Query: 123 TAAHRRHDAVV 133
               +    V 
Sbjct: 114 NHQRKDAPVVW 124

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Length = 236

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 35/154 (22%), Positives = 51/154 (33%), Gaps = 46/154 (29%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+  V++ A G   +L        PKA L V  R +L + L     +     ++V     
Sbjct: 24  MEVSVLIPAAGNGLRL-----GRGPKAFLQVGGRTLLEWTLAAFRDA---AEVLVA---- 71

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRA--IAHHLTAKD---VLV------- 108
                   +         +    +    G  GA R   +A  L A     VLV       
Sbjct: 72  --------LPPGAEPPKGLGAVFLE---G--GATRQASVARLLEAASLPLVLVHDVARPF 118

Query: 109 VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
           VS  LV+      V  A +R  A V      +PV
Sbjct: 119 VSRGLVA-----RVLEAAQRSGAAVPV----LPV 143

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           +  +++LA G S +     + +V K  L + N P+  Y  + L        IVV     
Sbjct: 2  SEMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNI 57

Query: 61 AALR 64
            ++
Sbjct: 58 TYMK 61

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 43/155 (27%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++LA G  +++    S+ VPK  L +  R +  Y L     S   D +V+V        
Sbjct: 16  AILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIV-------- 63

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAG----------ALRAIAHHLTAKDVLV------ 108
                   + + +   V          G          AL  +    +   VLV      
Sbjct: 64  ----TRREWFEVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEKF-SPSYVLVHDSARP 118

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            +    VS+V    +  A R   A   A    +  
Sbjct: 119 FLRKKHVSEV----LRRA-RETGAATLA----LKN 144

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 22/140 (15%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+  V++LA G  K+          K L  + N P++   +      +++ +I+V +  +
Sbjct: 1   MNIGVIILAAGEGKRF------GGDKLLAKIDNTPIIMRTIRI--YGDLEKIIIVGKYVN 52

Query: 61  AALRVGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHLTAKD-VLVVSGD--LVSD 116
             L +           +   V   P  + G + +L+         D VLV  GD   V+ 
Sbjct: 53  EMLPL----------LMDQIVIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTK 102

Query: 117 VPPGAVTAAHRRHDAVVTAM 136
                +    + +   V   
Sbjct: 103 EDVNKIINTFKPNCKAVIPT 122

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLI--------VV 55
           + V+LAGG   +L    +   PK ++ +  +P+L ++++   +  IKD I        V+
Sbjct: 4   KAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62

Query: 56  VE--------GADAALRVGG---WISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104
            E         +D    +      +    V+  +V +    +   T G L+ +A ++   
Sbjct: 63  KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD 122

Query: 105 DVLVVS-GDLVSDVPPGAVTAAHRRHDAVVTAMICSVP 141
           +  + + GD V+D+   A    H+ H    T      P
Sbjct: 123 EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPP 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	100.0
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	100.0
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	100.0
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.97
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.97
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	99.97
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	99.96
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	99.96
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	99.96
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.96
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.95
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.95
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.95
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.95
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.95
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.95
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.94
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.94
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.94
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.92
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.92
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.91
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.91
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.87
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.87
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.83
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.8
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.8
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.8
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.76
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	99.74
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.74
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.71
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.7
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	99.68
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	99.66
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	99.65
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	99.65
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	99.64
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	99.64
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	99.59
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	99.58
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	99.58
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	99.57
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	99.54
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	99.54
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	99.51
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.49
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	99.49
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.45
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	99.43
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	99.42
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	99.41
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	99.35
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	99.22
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	99.21
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	97.73
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	97.49
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	96.89
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	96.16
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	96.11
3bcv_A	240	Putative glycosyltransferase protein; protein stru	92.43
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	92.37
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	90.49
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	90.08
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	87.86
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	83.85
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	82.41

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=100.00  E-value=5.3e-35  Score=286.42  Aligned_cols=257  Identities=19%  Similarity=0.311  Sum_probs=185.5

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCc---
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRL---   77 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~---   77 (365)
                      +|+|||||||.|+||+|| |..+||+|+|++|+ |||+|+|++|.++|+++|+|++++..  +.+.+++...+...+   
T Consensus        20 ~~~avILAaG~gtRl~pl-T~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~   96 (451)
T 1yp2_A           20 SVLGIILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS--ASLNRHLSRAYASNMGGY   96 (451)
T ss_dssp             HEEEEEC------CCTTT-TTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCC--HHHHHHHHHHCC------
T ss_pred             ceEEEEECCCCCCcccch-hcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCH--HHHHHHHhhhhhcccccc
Confidence            478999999999999999 99999999999999 99999999999999999999998763  467777764321011   


Q ss_pred             ----ceEEEEc--C-----CCCChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccC
Q 017849           78 ----HVEVATV--P-----EDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS  143 (365)
Q Consensus        78 ----~v~i~~~--~-----~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~  143 (365)
                          .+.++..  .     ...|++++++.+++++.   .++|++++||++++.++.++++.|++.++++|+++.+.+..
T Consensus        97 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~  176 (451)
T 1yp2_A           97 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEK  176 (451)
T ss_dssp             --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHH
T ss_pred             cccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChh
Confidence                2444431  1     14899999999988875   46799999999999999999999999899999887664310


Q ss_pred             CCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeecccccc--ccccccHHHHhhcCccee-ccCcccceeeeeCHHHH
Q 017849          144 GLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELE--KDTRIRKSILRAVGQMDI-RADLMDAHMYAFNRSVL  220 (365)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~e--k~~~i~~~~l~~~~~~~~-~~~l~~~giyi~s~~vl  220 (365)
                                     ++..|+++.+|+++++ ..+.++++.+  +..+++.+++.+++.... .++++++|+|+|++++|
T Consensus       177 ---------------~~~~~g~v~~d~~~~v-~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l  240 (451)
T 1yp2_A          177 ---------------RATAFGLMKIDEEGRI-IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVM  240 (451)
T ss_dssp             ---------------HHTTSEEEEECTTSBE-EEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHH
T ss_pred             ---------------hcccCCEEEECCCCCE-EEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHH
Confidence                           1457899999987764 6676544321  111233333332221111 34789999999999998


Q ss_pred             HHHHhcC-ccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCce
Q 017849          221 QEVLDQK-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRT  299 (365)
Q Consensus       221 ~~~~~~~-~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (365)
                      ..++++. ....++.+++++.+++.+                                                      
T Consensus       241 ~~~l~~~~~~~~~~~~~~l~~~i~~g------------------------------------------------------  266 (451)
T 1yp2_A          241 LNLLRDKFPGANDFGSEVIPGATSLG------------------------------------------------------  266 (451)
T ss_dssp             HHHHHTTCTTCCCTTTTHHHHHHHTT------------------------------------------------------
T ss_pred             HHHHHhhcccccchHhhHHHHHHhcC------------------------------------------------------
Confidence            7666653 233456678888766432                                                      


Q ss_pred             eEEEEEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 017849          300 HKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (365)
Q Consensus       300 ~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~~  333 (365)
                      .++++|.+  ++||.+++|+.+|+++|+++++++
T Consensus       267 ~~v~~~~~--~~~w~digt~~~l~~a~~~l~~~~  298 (451)
T 1yp2_A          267 MRVQAYLY--DGYWEDIGTIEAFYNANLGITKKP  298 (451)
T ss_dssp             CCEEEEEC--CSCCEECSSHHHHHHHHHGGGCSS
T ss_pred             CceEEEEe--CCEEEECCCHHHHHHHHHHHhccc
Confidence            34678877  789999999999999999999765

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=100.00  E-value=7.6e-33  Score=254.54  Aligned_cols=239  Identities=13%  Similarity=0.228  Sum_probs=183.1

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-c-----
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V-----   74 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~-----   74 (365)
                      |.|+|||||||.|+||+|+ |..+||+|+||+|||||+|+|+++.++|+++|+|++++.  .+.+.+++.+.+ .     
T Consensus         1 M~~~avIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~--~~~i~~~~~~~~~l~~~l~   77 (281)
T 3juk_A            1 MIKKCLFPAAGYGTRFLPI-TKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRN--KRSLEDYFDTSYEIEHQIQ   77 (281)
T ss_dssp             CCCEEEEECCSCCGGGTTG-GGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTT--HHHHHHHTSCCC-------
T ss_pred             CceEEEEECCcCCcccCcc-ccCCCcccceECCEEHHHHHHHHHHhCCCCEEEEEecCC--HHHHHHHHhcchhhhhhhh
Confidence            8899999999999999999 999999999999999999999999999999999999865  357888875421 0     


Q ss_pred             ---------------CCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCC-----hHHHHHHHHhcCCeEE
Q 017849           75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-----PGAVTAAHRRHDAVVT  134 (365)
Q Consensus        75 ---------------~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~-----l~~~l~~h~~~~a~~t  134 (365)
                                     ....+.++.++...|++++++.+++++.+++|+|++||.+++.+     +..+++.|++.++ .+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~  156 (281)
T 3juk_A           78 GTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SI  156 (281)
T ss_dssp             -CCHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CE
T ss_pred             cccchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CE
Confidence                           01234455667789999999999998877789999999988888     9999999988877 56


Q ss_pred             EEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcC--CC-cEEEEeeccccccccccccHHHHhhcCcceeccCcccce
Q 017849          135 AMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP--TK-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH  211 (365)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~--~~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~g  211 (365)
                      +++..++..               .+..||++.+|+  +| ..+..+.+++..+                ...++++++|
T Consensus       157 v~~~~~~~~---------------~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~----------------~~~~~~~~~G  205 (281)
T 3juk_A          157 VAIEEVALE---------------EVSKYGVIRGEWLEEGVYEIKDMVEKPNQE----------------DAPSNLAVIG  205 (281)
T ss_dssp             EEEEECCTT---------------TGGGSEEEEEEEEETTEEEEEEEEESCCTT----------------TCSCSEEEEE
T ss_pred             EEEEEechh---------------hcccCCEEEeccCCCCceEEeEEEECcCCC----------------CCCcceeEEE
Confidence            665554311               256899999886  55 1345666433211                1235789999


Q ss_pred             eeeeCHHHHHHHHhcCc----cccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCccccccc
Q 017849          212 MYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYA  287 (365)
Q Consensus       212 iyi~s~~vl~~~~~~~~----~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (365)
                      +|+|++++|..+ .+..    +..++ .|+++.++..+                                          
T Consensus       206 iYi~~~~~l~~l-~~~~~~~~~e~~l-~d~i~~l~~~~------------------------------------------  241 (281)
T 3juk_A          206 RYILTPDIFEIL-SETKPGKNNEIQI-TDALRTQAKRK------------------------------------------  241 (281)
T ss_dssp             EEEECTTHHHHH-HTCCCCGGGSCCH-HHHHHHHHHHS------------------------------------------
T ss_pred             EEEECHHHHHHH-HhcCCCCCCceeH-HHHHHHHHhcC------------------------------------------
Confidence            999999999655 4321    11222 46666655331                                          


Q ss_pred             CCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 017849          288 LGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (365)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~~  333 (365)
                                   ++++|.+  +|||..|+|+.+|+++|+++++..
T Consensus       242 -------------~v~~~~~--~g~~~dIgt~~d~~~a~~~l~~~~  272 (281)
T 3juk_A          242 -------------RIIAYQF--KGKRYDCGSVEGYIEASNAYYKKR  272 (281)
T ss_dssp             -------------CCEEEEC--CSEEEETTSHHHHHHHHHHHHHHH
T ss_pred             -------------CEEEEEe--CCeEEcCCCHHHHHHHHHHHHhch
Confidence                         3578888  689999999999999999999764

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=100.00  E-value=2.7e-32  Score=264.86  Aligned_cols=247  Identities=17%  Similarity=0.241  Sum_probs=180.8

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc-C----
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-D----   75 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~----   75 (365)
                      +|+|||||||.|+||+|| |..+||+|+|++|+ |||+|+|++|.++|+++|+|++++..  +.+.+++.+.+. .    
T Consensus        12 ~~~avILAaG~gtRl~pl-T~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~   88 (420)
T 3brk_X           12 DAMAYVLAGGRGSRLKEL-TDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKA--HSLIRHLQRGWDFFRPER   88 (420)
T ss_dssp             GEEEEEEECCCCGGGGGG-GSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTC--HHHHHHHHHHSCCCCGGG
T ss_pred             ceEEEEEcCCCCCccchh-hcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCCh--HHHHHHHhhhhccccccc
Confidence            478999999999999999 99999999999999 99999999999999999999998653  477888865221 1    


Q ss_pred             CcceEEEEcC----CC---CChHHHHHHHHHHcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 017849           76 RLHVEVATVP----ED---VGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (365)
Q Consensus        76 ~~~v~i~~~~----~~---~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~  145 (365)
                      ...+.++...    +.   .|++++++.+++++.   .++|++++||.+++.++.++++.|++.++++|+++.+.+..  
T Consensus        89 ~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~--  166 (420)
T 3brk_X           89 NESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRM--  166 (420)
T ss_dssp             TCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETT--
T ss_pred             cCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCcc--
Confidence            1124444321    23   899999999888774   26799999999889999999999999899999888765321  


Q ss_pred             ccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                                   .+..|+++.+|+++++ ..+.+++......          . ....+.++++|+|+|++++|..+++
T Consensus       167 -------------~~~~~g~v~~d~~g~v-~~~~ekp~~~~~~----------~-~~~~~~~~~~Giy~~~~~~l~~~l~  221 (420)
T 3brk_X          167 -------------EATGFGVMHVNEKDEI-IDFIEKPADPPGI----------P-GNEGFALASMGIYVFHTKFLMEAVR  221 (420)
T ss_dssp             -------------GGGGSEEEEECTTSBE-EEEEESCSSCCCB----------T-TBTTEEEEEEEEEEEEHHHHHHHHT
T ss_pred             -------------ccCcccEEEECCCCcE-EEeEeCCCccccc----------c-ccccceEEeeeeEEEeHHHHHHHHH
Confidence                         2457899999987764 5665433211100          0 0112578999999999999876665


Q ss_pred             cCc----cccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeE
Q 017849          226 QKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (365)
Q Consensus       226 ~~~----~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (365)
                      +..    ...++..|+++.+++++                                                       +
T Consensus       222 ~~~~~~~~~~~~~~d~l~~li~~g-------------------------------------------------------~  246 (420)
T 3brk_X          222 RDAADPTSSRDFGKDIIPYIVEHG-------------------------------------------------------K  246 (420)
T ss_dssp             SSCCC----------CTTHHHHHS-------------------------------------------------------C
T ss_pred             HhcccCCccccchHHHHHHHhhhC-------------------------------------------------------c
Confidence            422    12244568888876552                                                       3


Q ss_pred             EEEEEec---------CCceEEEeCCHHHHHHHhHHHhhhh
Q 017849          302 CCVYIAS---------NSKYCVRLNSIQAFMDINRDVIGEA  333 (365)
Q Consensus       302 ~~~~~~~---------~~~y~~ri~~~~~Y~~~n~~~l~~~  333 (365)
                      +++|.++         .+|||.+|+|+.+|.++|+++++++
T Consensus       247 v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~  287 (420)
T 3brk_X          247 AVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVV  287 (420)
T ss_dssp             EEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSS
T ss_pred             EEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCC
Confidence            4666662         2579999999999999999999765

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.97  E-value=7.3e-30  Score=233.20  Aligned_cols=234  Identities=16%  Similarity=0.250  Sum_probs=177.7

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      .|+|||||||.|+||+|+ |..+||+|+|++|+|||+|+|+++.++|+++|+|++++.+. +.+.+++.+...-...+.+
T Consensus        24 ~m~aiIlAaG~g~Rl~~l-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~iivv~~~~~~-~~~~~~~~~~~~~~~~i~~  101 (269)
T 4ecm_A           24 AMKGIILAGGTGSRLYPI-TKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHM-GDVVSFLGSGQEFGVSFTY  101 (269)
T ss_dssp             CEEEEEECCSCCGGGTTT-TSSSCGGGSEETTEEHHHHHHHHHHHTTCCEEEEEECTTTH-HHHHHHHTTSGGGTCEEEE
T ss_pred             CcEEEEECCCCccccccc-cCCCCceecEECCEEHHHHHHHHHHHCCCCEEEEECChhhH-HHHHHHHhhccccCceEEE
Confidence            479999999999999999 99999999999999999999999999999999999986432 3567777531100123455


Q ss_pred             EEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCC
Q 017849           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (365)
                      +.++...|++++++.+++.+..++|++++||.++..++.++++.|++.++++++++.+..                 .+.
T Consensus       102 ~~~~~~~G~~~al~~a~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-----------------~~~  164 (269)
T 4ecm_A          102 RVQDKAGGIAQALGLCEDFVGNDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVD-----------------DPE  164 (269)
T ss_dssp             EECSSCCCHHHHHHTTHHHHTTSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECS-----------------CGG
T ss_pred             eeCCccCcHHHHHHHHHHhcCCCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECC-----------------CCC
Confidence            556677999999999988887678999999998889999999999988899988876543                 255


Q ss_pred             cceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccc--ccc-ccchh
Q 017849          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKF--QSL-KQDVL  238 (365)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~--~s~-~~d~l  238 (365)
                      .|+++..|+ ++ +..+.+     |+.             ...+.++++|+|+|++++|..+ .+....  ..+ -.+++
T Consensus       165 ~~g~v~~d~-g~-v~~~~e-----kp~-------------~~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~ge~~l~d~l  223 (269)
T 4ecm_A          165 RFGVANIQN-RK-IIEIEE-----KPK-------------EPKSSYAVTGIYLYDSKVFSYI-KELKPSARGELEITDIN  223 (269)
T ss_dssp             GSEEEEEET-TE-EEEEEE-----SCS-------------SCSCSEEEEEEEEECTTHHHHH-TSCCBCTTSCBCHHHHH
T ss_pred             CceEEEEcC-CE-EEEEEE-----CCC-------------CCCCcEEEEEEEEECHHHHHhh-hhcCCCCCCeeeHHHHH
Confidence            789998885 54 456653     321             1235789999999999998544 432110  111 13444


Q ss_pred             hHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCC
Q 017849          239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS  318 (365)
Q Consensus       239 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~  318 (365)
                      +.++..                                                       -++++|..  ++||..|+|
T Consensus       224 ~~l~~~-------------------------------------------------------g~v~~~~~--~~~~~dIgt  246 (269)
T 4ecm_A          224 NWYLKR-------------------------------------------------------GVLTYNEM--SGWWTDAGT  246 (269)
T ss_dssp             HHHHHT-------------------------------------------------------TCEEEEEC--CSCEEECSS
T ss_pred             HHHHHc-------------------------------------------------------CCEEEEEe--CCEEEeCCC
Confidence            444322                                                       13566776  789999999


Q ss_pred             HHHHHHHhHHHhhh
Q 017849          319 IQAFMDINRDVIGE  332 (365)
Q Consensus       319 ~~~Y~~~n~~~l~~  332 (365)
                      +..|.++++.+++.
T Consensus       247 ~~dl~~a~~~l~~~  260 (269)
T 4ecm_A          247 HVSLQRANALARDI  260 (269)
T ss_dssp             HHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998764

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.97  E-value=7.5e-30  Score=252.95  Aligned_cols=187  Identities=25%  Similarity=0.300  Sum_probs=152.3

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc-CCcceEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DRLHVEV   81 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~~~v~i   81 (365)
                      +.+||||||+||||+|+ |   ||||+||+|||||+|+|++|.++|+++|+|++++.  .+.+.+++.+... -...+.+
T Consensus        13 ~~vvILAaG~GtRm~~~-~---pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~~i~~   86 (501)
T 3st8_A           13 TAVLVLAAGPGTRMRSD-T---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHD--HQRIAPLVGELADTLGRTIDV   86 (501)
T ss_dssp             EEEEEEECSCCGGGCCS-S---CGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECTT--HHHHHHHHHHHHHHHTSCCEE
T ss_pred             ceEEEECCcCcccCCCC-C---CHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHHHHHHhcCCcEEE
Confidence            56799999999999998 5   99999999999999999999999999999999976  4688888865211 1246888


Q ss_pred             EEcCCCCChHHHHHHHHHHcCC---CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849           82 ATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~---~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (365)
                      +.+++++|||+|++.+++++.+   ++++++.||.  +....+..+++.|+..++++|+++.+.+               
T Consensus        87 ~~q~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~---------------  151 (501)
T 3st8_A           87 ALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLD---------------  151 (501)
T ss_dssp             EECSSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS---------------
T ss_pred             EEcCCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccC---------------
Confidence            8899999999999999998864   4689999994  4445689999999999999999987754               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcC
Q 017849          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK  227 (365)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~  227 (365)
                        +|..||.+..|+++++ ..+.++++..     +.         +...+++++|+|+|++++|..++...
T Consensus       152 --dp~~yG~i~~~~~g~v-~~ivEk~~~~-----~~---------~~~i~~in~Giy~f~~~~l~~~l~~l  205 (501)
T 3st8_A          152 --DPFGYGRILRTQDHEV-MAIVEQTDAT-----PS---------QREIREVNAGVYAFDIAALRSALSRL  205 (501)
T ss_dssp             --CCTTSCEEEECTTCCE-EEEECGGGCC-----HH---------HHHCCEEEEEEEEEEHHHHHHHHTTC
T ss_pred             --CchhccccccccceeE-EeeccccCCC-----hh---------hccceeeeceeeeecchhHHHhhhhh
Confidence              3778999999998875 5666432211     11         23458899999999999999887653

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=99.97  E-value=1.8e-29  Score=228.97  Aligned_cols=229  Identities=18%  Similarity=0.308  Sum_probs=166.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc--CCcc
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--DRLH   78 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~--~~~~   78 (365)
                      |+|.|||||||.|+||+|+ |..+||+|+|++|||||+|+++++.++|+++|+|++++..  +.+.+++.....  ..+.
T Consensus         1 m~~~avIlAaG~gtRl~~l-t~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~   77 (259)
T 1tzf_A            1 MASKAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKG--YVIKEYFANYFLHMSDVT   77 (259)
T ss_dssp             CCCEEEEEECSCC---------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTH--HHHHHHHHTHHHHHSCEE
T ss_pred             CCcEEEEECCCCcccCCCc-cCCCCccccEECCEEHHHHHHHHHHHCCCCEEEEEcccCH--HHHHHHHhhccccccccc
Confidence            8999999999999999999 9999999999999999999999999999999999998653  477888764310  0111


Q ss_pred             -------------------eEEEEcCCCCChHHHHHHHHHHcC-CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEe
Q 017849           79 -------------------VEVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMIC  138 (365)
Q Consensus        79 -------------------v~i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~  138 (365)
                                         +.+..++...|++++++.+++++. .++|++++||.+++.++.++++.|++.++++|+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~  157 (259)
T 1tzf_A           78 FHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT  157 (259)
T ss_dssp             EEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred             ccccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCCCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEe
Confidence                               112223346899999999988873 567999999999999999999999888888776532


Q ss_pred             eeccCCCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHH
Q 017849          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS  218 (365)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~  218 (365)
                      .                   .+..|+++.+| +++ +..+.+     |+.              ....++++|+|+|+++
T Consensus       158 ~-------------------~~~~~g~v~~~-~g~-v~~~~e-----kp~--------------~~~~~~~~Giy~~~~~  197 (259)
T 1tzf_A          158 F-------------------PPGRFGALDIQ-AGQ-VRSFQE-----KPK--------------GDGAMINGGFFVLNPS  197 (259)
T ss_dssp             C-------------------CCCCSEEEEEE-TTE-EEEEEE-----SCS--------------CCSCCEECCCEEECGG
T ss_pred             c-------------------CCCCccEEEEc-CCE-EEEEEe-----cCC--------------CCCceEEEEEEEeCHH
Confidence            1                   14568888888 564 456653     321              1236889999999999


Q ss_pred             HHHHHHhcCccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCc
Q 017849          219 VLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR  298 (365)
Q Consensus       219 vl~~~~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (365)
                      +|..+ ++.  ..++..++++.+++++                                                     
T Consensus       198 ~l~~l-~~~--~~~~~~~~i~~~~~~~-----------------------------------------------------  221 (259)
T 1tzf_A          198 VIDLI-DND--ATTWEQEPLMTLAQQG-----------------------------------------------------  221 (259)
T ss_dssp             GGGGC-CST--TCCTTTHHHHHHHHTT-----------------------------------------------------
T ss_pred             HHHhh-ccc--ccccHHHHHHHHHHcC-----------------------------------------------------
Confidence            88533 321  1234456676654321                                                     


Q ss_pred             eeEEEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 017849          299 THKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (365)
Q Consensus       299 ~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~  332 (365)
                        ++++|.+  ++||..|+|+.+|.++++.+.+.
T Consensus       222 --~v~~~~~--~~~~~dI~t~~d~~~a~~~~~~~  251 (259)
T 1tzf_A          222 --ELMAFEH--PGFWQPMDTLRDKVYLEGLWEKG  251 (259)
T ss_dssp             --CEEEEEE--CSCEEECCSHHHHHHHHHHHHTT
T ss_pred             --CEEEEEe--CcEEEeCCCHHHHHHHHHHHhcC
Confidence              3577877  67999999999999999998753

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=99.96  E-value=2e-28  Score=227.41  Aligned_cols=235  Identities=12%  Similarity=0.224  Sum_probs=171.7

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh---------
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY---------   73 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~---------   73 (365)
                      |+|||||||.|+||+|+ |..+||+|+||+|+|||+|+++++.++|+++|+|++++.  .+.+.+|+...+         
T Consensus         9 ~~avIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~--~~~i~~~~~~~~~l~~~l~~~   85 (302)
T 2e3d_A            9 KKAVIPVAGLGTRMLPA-TKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSS--KNSIENHFDTSFELEAMLEKR   85 (302)
T ss_dssp             CEEEEECCSCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG--GHHHHHHHSCCHHHHHHHC--
T ss_pred             cEEEEECCcCcccCCcc-ccCCCceeeEECCeEHHHHHHHHHHHCCCCEEEEEeCCC--HHHHHHHHhcchhhhhhhhhc
Confidence            78999999999999999 999999999999999999999999999999999999865  357888875321         


Q ss_pred             -------------cCCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccC-----C---ChHHHHHHHHhcCCe
Q 017849           74 -------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD-----V---PPGAVTAAHRRHDAV  132 (365)
Q Consensus        74 -------------~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~-----~---~l~~~l~~h~~~~a~  132 (365)
                                   .....+.++.++...|++++++.+++++.+++|+|++||++++     .   ++..+++.|++.++ 
T Consensus        86 ~~~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-  164 (302)
T 2e3d_A           86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-  164 (302)
T ss_dssp             --CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-
T ss_pred             cchhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcCCCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-
Confidence                         0112345566677899999999999888667899999998776     2   79999999988777 


Q ss_pred             EEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEc----CCCc--EEEEeeccccccccccccHHHHhhcCcceeccC
Q 017849          133 VTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQ--FLLHIATGAELEKDTRIRKSILRAVGQMDIRAD  206 (365)
Q Consensus       133 ~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~--~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~  206 (365)
                      +|+++....                 .+..|+++..+    ++|.  .+..+.+++..+                ...+.
T Consensus       165 ~~i~~~~~~-----------------~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~----------------~~~~~  211 (302)
T 2e3d_A          165 SQIMVEPVA-----------------DVTAYGVVDCKGVELAPGESVPMVGVVEKPKAD----------------VAPSN  211 (302)
T ss_dssp             EEEEEEECS-----------------CGGGSEEEECTTCCCCTTCEEEECEEEESCCTT----------------TCSCS
T ss_pred             cEEEEEEcc-----------------CCCCccEEEecccccCCCCceeEEEEEECCCCC----------------ccccc
Confidence            666655431                 24578988774    3441  344555322110                12347


Q ss_pred             cccceeeeeCHHHHHHHHhcCc-cc-ccc-ccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCccc
Q 017849          207 LMDAHMYAFNRSVLQEVLDQKD-KF-QSL-KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH  283 (365)
Q Consensus       207 l~~~giyi~s~~vl~~~~~~~~-~~-~s~-~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (365)
                      ++++|+|+|++++|..+ ++.. +. ..+ -.++++.+++.                                       
T Consensus       212 ~~~~Giyi~~~~~l~~l-~~~~~~~~~~~~l~d~i~~l~~~---------------------------------------  251 (302)
T 2e3d_A          212 LAIVGRYVLSADIWPLL-AKTPPGAGDEIQLTDAIDMLIEK---------------------------------------  251 (302)
T ss_dssp             EEEEEEEEECTTHHHHH-TCCCC----CCCHHHHHHHHHHH---------------------------------------
T ss_pred             eEEEEEEEECHHHHHHH-HhhCCCCCCceehHHHHHHHHHh---------------------------------------
Confidence            88999999999988654 4321 10 011 12444443322                                       


Q ss_pred             ccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 017849          284 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (365)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~  332 (365)
                                     . ++++|.+  +|||..|+|+.+|.++|++++-.
T Consensus       252 ---------------~-~v~~~~~--~~~~~DIgt~~d~~~a~~~~~~~  282 (302)
T 2e3d_A          252 ---------------E-TVEAYHM--KGKSHDCGNKLGYMQAFVEYGIR  282 (302)
T ss_dssp             ---------------S-CEEEEEC--CSCEEECSSHHHHHHHHHHHHHH
T ss_pred             ---------------C-CEEEEEe--CCeEEcCCCHHHHHHHHHHHHhc
Confidence                           1 4577877  67999999999999999888653

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=99.96  E-value=5.1e-29  Score=230.84  Aligned_cols=240  Identities=16%  Similarity=0.173  Sum_probs=161.1

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh-------
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-------   73 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-------   73 (365)
                      +.|+|||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++|+|++++..  +.+.+++...+       
T Consensus        13 ~~~~avIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~~~~l~~~l~   89 (297)
T 2ux8_A           13 PLRKAVFPVAGLGTRFLPA-TKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGK--SALEDHFDIAYELEATMA   89 (297)
T ss_dssp             CCCEEEEEECCCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTC--HHHHHHTSCCHHHHHHHH
T ss_pred             CccEEEEECCCCccccCcc-ccCCCceeeeECCeEHHHHHHHHHHhCCCCEEEEEeCCCH--HHHHHHHhhhhhhhhhhh
Confidence            3578999999999999999 9999999999999999999999999999999999998653  47777765311       


Q ss_pred             -------------cCCcceEEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcccC---CChHHHHHHHHhcCCeEEEEE
Q 017849           74 -------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD---VPPGAVTAAHRRHDAVVTAMI  137 (365)
Q Consensus        74 -------------~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~---~~l~~~l~~h~~~~a~~t~l~  137 (365)
                                   .....+.++.++...|++++++.+++++.+++|+|++||++++   .++..+++.|++.++ .++.+
T Consensus        90 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~  168 (297)
T 2ux8_A           90 ARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICA  168 (297)
T ss_dssp             TTTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHCSSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEE
T ss_pred             hccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcCCCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEE
Confidence                         0123466666677899999999998888667899999997766   679999999988776 45555


Q ss_pred             eeeccCCCccCCCCCCccCCCCCCcceEEEEcC--CC-cEEEEeeccccccccccccHHHHhhcCcceeccCcccceeee
Q 017849          138 CSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP--TK-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYA  214 (365)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~--~~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi  214 (365)
                      ...+..               .+..|+++..++  ++ ..+..+.+     |+..          . ...+.++++|+|+
T Consensus       169 ~~~~~~---------------~~~~yg~v~~~~~~~~~~~v~~~~e-----kp~~----------~-~~~~~~~~~Giyi  217 (297)
T 2ux8_A          169 EEVPDD---------------QTHRYGIITPGTQDGVLTEVKGLVE-----KPAP----------G-TAPSNLSVIGRYI  217 (297)
T ss_dssp             C--------------------------CCCCCCBCSSEEEC------------------------------CCCEEEEEE
T ss_pred             EecCcc---------------cCCCCCeEEecccCCCceeEEEEEE-----CCCC----------C-CCCccEEEEEEEE
Confidence            443211               245677776653  33 13344543     2210          0 1235789999999


Q ss_pred             eCHHHHHHHHhcCcccc-cc-ccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCC
Q 017849          215 FNRSVLQEVLDQKDKFQ-SL-KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNG  292 (365)
Q Consensus       215 ~s~~vl~~~~~~~~~~~-s~-~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (365)
                      |++++|..+.+...+.. .+ -.++++.+++                                                 
T Consensus       218 ~~~~~l~~l~~~~~~~~~~~~l~d~i~~l~~-------------------------------------------------  248 (297)
T 2ux8_A          218 LQPEVMRILENQGKGAGGEIQLTDAMQRMIG-------------------------------------------------  248 (297)
T ss_dssp             ECTHHHHHHHHTC--------CCTTGGGGTT-------------------------------------------------
T ss_pred             ECHHHHHHHHhhCCCCCCeeEHHHHHHHHHh-------------------------------------------------
Confidence            99998865532111100 00 0122222110                                                 


Q ss_pred             CCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 017849          293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (365)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~  332 (365)
                           . -++++|.+  +|+|..|+|+.+|.++|++++..
T Consensus       249 -----~-~~v~~~~~--~~~w~dIgt~~dl~~a~~~~~~~  280 (297)
T 2ux8_A          249 -----D-QPFHGVTF--QGTRYDCGDKAGFIQANLAVALS  280 (297)
T ss_dssp             -----T-SCEEEEEC--SSEEEETTSHHHHHHHHHHHHHH
T ss_pred             -----c-CCEEEEEe--cceEEeCCCHHHHHHHHHHHHhc
Confidence                 0 15688887  67999999999999999998754

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.96  E-value=3e-28  Score=228.23  Aligned_cols=239  Identities=17%  Similarity=0.205  Sum_probs=172.6

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhh--------
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------   73 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~--------   73 (365)
                      .|+|||||||.|+||+|+ |..+||+|+||+|+|||+|+++++..+|+++|+|++++..  +.+.+++...+        
T Consensus        12 ~~~aVIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~gi~~iivv~~~~~--~~i~~~~~~~~~~~~~l~~   88 (323)
T 2pa4_A           12 VKTVVVPAAGLGTRFLPA-TKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNK--AGVLAHFERSSELEETLME   88 (323)
T ss_dssp             CCEEEEECCCCCGGGTTG-GGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTC--HHHHHTTSCCHHHHHHHHH
T ss_pred             ceEEEEECCCCccccCcc-ccCCCceeeeECCEEHHHHHHHHHHhCCCCEEEEEecCcH--HHHHHHHhccchhhhhhhc
Confidence            378999999999999999 9999999999999999999999999999999999998653  46776664210        


Q ss_pred             -------------cCCcceEEEEcCCCCChHHHHHHHHHHcCCCc--EEEEeCCcccC--CChHHHHHHHHhcCCeEEEE
Q 017849           74 -------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKD--VLVVSGDLVSD--VPPGAVTAAHRRHDAVVTAM  136 (365)
Q Consensus        74 -------------~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~~--~lv~~~D~i~~--~~l~~~l~~h~~~~a~~t~l  136 (365)
                                   .....+.++.++...|++++++.+++++.+++  |+|++||.+++  .++..+++.|++.++ .++.
T Consensus        89 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~  167 (323)
T 2pa4_A           89 RGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLC  167 (323)
T ss_dssp             TTCHHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEE
T ss_pred             cchhhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEE
Confidence                         00123555666677999999999988886555  99999997765  679999999987776 4555


Q ss_pred             EeeeccCCCccCCCCCCccCCCCCCcceEEEEc----CCC-cEEEEeeccccccccccccHHHHhhcCcceeccCcccce
Q 017849          137 ICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTK-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH  211 (365)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~g  211 (365)
                      +...+..               .+..|+++.++    +++ ..+..+.+++..+                ...+.++++|
T Consensus       168 ~~~~~~~---------------~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~----------------~~~~~~~~~G  216 (323)
T 2pa4_A          168 AVEVSEA---------------DVSKYGIFEIEADTKDSDVKKVKGMVEKPAIE----------------DAPSRLAATG  216 (323)
T ss_dssp             EEECCGG---------------GGGGSEEEEEEECCSSTTEEEEEEEEESCCTT----------------TCSCSEEEEE
T ss_pred             EEEeccc---------------ccCCccEEEeCCcccCCCceeEEEEEECCCCc----------------cccccEEEEE
Confidence            5443210               24578988877    443 2456665432111                1234788999


Q ss_pred             eeeeCHHHHHHHHhcCccc-cccc-cchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCC
Q 017849          212 MYAFNRSVLQEVLDQKDKF-QSLK-QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALG  289 (365)
Q Consensus       212 iyi~s~~vl~~~~~~~~~~-~s~~-~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (365)
                      +|+|++++|..+.....+. ..+. .++++.+++++                                            
T Consensus       217 iY~~~~~~~~~l~~~~~~~~ge~~l~d~i~~l~~~g--------------------------------------------  252 (323)
T 2pa4_A          217 RYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEG--------------------------------------------  252 (323)
T ss_dssp             EEEEETHHHHHHHHCCCCGGGCCCHHHHHHHHHHTT--------------------------------------------
T ss_pred             EEEECHHHHHHHHhhCCCCCCeEeHHHHHHHHHHcC--------------------------------------------
Confidence            9999999886553322111 1111 35555543221                                            


Q ss_pred             CCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 017849          290 PNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (365)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~  331 (365)
                                .++++|.+  +|+|..|+|+.+|.+++++++.
T Consensus       253 ----------~~v~~~~~--~g~w~DIgt~~dl~~a~~~~~~  282 (323)
T 2pa4_A          253 ----------HPVHIVIH--QGKRHDLGNPGGYIPACVDFGL  282 (323)
T ss_dssp             ----------CCEEEEEC--CSEEEECSSHHHHHHHHHHHHH
T ss_pred             ----------CCEEEEEe--CCeEEeCCCHHHHHHHHHHHhh
Confidence                      34678887  6799999999999999998874

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.96  E-value=1e-27  Score=222.48  Aligned_cols=255  Identities=14%  Similarity=0.139  Sum_probs=177.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceecee--CCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcc
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPV--ANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv--~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~   78 (365)
                      |++.|||||||.|+||+|      ||+|+|+  +|+|||+|+|+++.++|+++|+|++++.. .+.+.+++.+.+....+
T Consensus         4 m~~~~vIlAaG~g~R~~~------~K~l~~ig~~g~pli~~~l~~~~~~~~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~   76 (303)
T 3pnn_A            4 MKPTLFVLAAGMGSRYGS------LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSF-EKEFREKILTKYEGRIP   76 (303)
T ss_dssp             CCCEEEEECTTCBCTTSS------BCCCCCCSTTSCCHHHHHHHHHHHHTCCEEEEEECGGG-HHHHHHHTHHHHTTTSC
T ss_pred             CceEEEEECCCCcccCCC------CceEeEcCCCCeeHHHHHHHHHHHCCCCeEEEEcCchH-HHHHHHHHHHHhccCCc
Confidence            788999999999999965      5999999  59999999999999999999999998653 25788888754322345


Q ss_pred             eEEEEcC---------------CCCChHHHHHHHHHHcCCCcEEEEeCCcccCCC-hHHHHHHHHh---cCCeEEEEEee
Q 017849           79 VEVATVP---------------EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRR---HDAVVTAMICS  139 (365)
Q Consensus        79 v~i~~~~---------------~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~---~~a~~t~l~~~  139 (365)
                      +.++.++               .+.||+++++.+++++ +++|+|++||.+++.+ ++.+++.|.+   .++++|+++..
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i-~~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~  155 (303)
T 3pnn_A           77 VELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI-REPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYR  155 (303)
T ss_dssp             EEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC-CSCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEE
T ss_pred             EEEEecccccccccccccccccccCCcHHHHHHHHHhc-CCCEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEE
Confidence            6677665               5799999999999988 6789999999988775 8999999975   57889988876


Q ss_pred             eccCCC-ccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccc---cccHHHHhhcCc--ceeccCcccceee
Q 017849          140 VPVSGL-SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDT---RIRKSILRAVGQ--MDIRADLMDAHMY  213 (365)
Q Consensus       140 ~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~---~i~~~~l~~~~~--~~~~~~l~~~giy  213 (365)
                      ..  +| ..++          ...+|++.+|++|+ +..+.++++.....   ..+.    ..+.  ....++++++|+|
T Consensus       156 ~~--~~~~~~g----------~~~~G~v~~d~~g~-v~~i~Ekp~~~~~~~~~~~~~----~~g~~~~~~~~~~i~~GiY  218 (303)
T 3pnn_A          156 VG--NTLSESG----------GVSRGVCQVDEKHL-LTGVVERTGIERTDGTISFRD----ETGKICTLAEDAPVSMNMW  218 (303)
T ss_dssp             GG--GSCBTTB----------CEEEEEEEECTTSB-EEEEEEEEEEEEETTEEEEEC----TTSCEEEECTTCEEEEEEE
T ss_pred             CC--CccCccC----------ceeeeeEeeCCCCc-EEEEEECCCCccccccccccc----cccccccCCCCCEEEEEEE
Confidence            53  22 1110          11347888998776 46776544321000   0000    0000  0024689999999


Q ss_pred             eeCHHHHHHHHh--------cCccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCccccc
Q 017849          214 AFNRSVLQEVLD--------QKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHEL  285 (365)
Q Consensus       214 i~s~~vl~~~~~--------~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (365)
                      +|++++|..+..        ...  ..-.+..++.++..-...                                     
T Consensus       219 ~f~~~~~~~l~~~~~~~l~~~~~--~~~~e~~l~d~i~~li~~-------------------------------------  259 (303)
T 3pnn_A          219 GFTPDYFDYSEELFINFLNAHGQ--EPKSEFFIPFVVNDLIRS-------------------------------------  259 (303)
T ss_dssp             EECTHHHHHHHHHHHHHHHHHTT--CSSCCCCHHHHHHHHHHH-------------------------------------
T ss_pred             EECHHHHHHHHHHHHHHHHhcCC--CcCCcEEhHHHHHHHHHc-------------------------------------
Confidence            999999976532        111  111122334333322110                                     


Q ss_pred             ccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 017849          286 YALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (365)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~~  333 (365)
                                  ...++++|.+  +|||..|+|+..|.++++.+-+.+
T Consensus       260 ------------g~~~v~~~~~--~g~w~dIgt~~dl~~a~~~l~~~~  293 (303)
T 3pnn_A          260 ------------GRASVEVLDT--TARWFGVTYSDDRPGVVAKLRELT  293 (303)
T ss_dssp             ------------TSCEEEEEEC--SCCCBCCSSGGGHHHHHHHHHHHH
T ss_pred             ------------CCCcEEEEEe--CCceECCCCHHHHHHHHHHHHHHH
Confidence                        0126788888  789999999999999999886654

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.95  E-value=4.5e-27  Score=217.08  Aligned_cols=185  Identities=20%  Similarity=0.338  Sum_probs=143.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |+|.|||||||.|+||+|+ |..+||+|+||+|||||+|+++.|..+|+++|+|++...+ .+.+.+++.+...-...+.
T Consensus         1 M~~~aIILAgG~gtRl~pl-T~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~-~~~i~~~l~~g~~~g~~i~   78 (293)
T 1fxo_A            1 MKRKGIILAGGSGTRLHPA-TLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQD-TPRFQQLLGDGSNWGLDLQ   78 (293)
T ss_dssp             -CEEEEEECCCCCTTTTTH-HHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEE
T ss_pred             CCceEEEECCCCCCcCccc-cCCCCceeCeECCEeHHHHHHHHHHHCCCCEEEEEecccc-HHHHHHHHhcccccCceEE
Confidence            8899999999999999999 9999999999999999999999999999999998885433 3467777764100012345


Q ss_pred             EEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcc-cCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV-SDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i-~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (365)
                      ++.++.+.|++++++.+.+++.+++++++.||.+ .+.++..+++.|.+.+++++++...+.                 +
T Consensus        79 ~~~~~~~~G~~~al~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~-----------------d  141 (293)
T 1fxo_A           79 YAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVL-----------------D  141 (293)
T ss_dssp             EEECSSCCCGGGHHHHTHHHHTTSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS-----------------C
T ss_pred             EeeCCCCCCHHHHHHHHHHHhCCCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECC-----------------C
Confidence            5566778999999999998887678889999964 467899999999776677777655432                 2


Q ss_pred             CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~  223 (365)
                      +..|+++.+|+++++ ..+.+     |+.             ...++++++|+|+|+++++..+
T Consensus       142 p~~~g~v~~d~~g~v-~~~~e-----kp~-------------~~~s~~~~~Giy~~~~~~l~~~  186 (293)
T 1fxo_A          142 PERYGVVEFDQGGKA-ISLEE-----KPL-------------EPKSNYAVTGLYFYDQQVVDIA  186 (293)
T ss_dssp             GGGSEEEEECTTSCE-EEEEE-----SCS-------------SCSSSEEEEEEEEECTTHHHHH
T ss_pred             cccCcEEEECCCCcE-EEEEE-----CCC-------------CCCCCeEEEEEEEEcHHHHHHH
Confidence            557899999987765 45653     321             1235789999999999998655

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.95  E-value=3.4e-27  Score=231.97  Aligned_cols=229  Identities=20%  Similarity=0.265  Sum_probs=170.0

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~   83 (365)
                      +|||||||.|+||+    ..+||+|+|++|||||+|++++|.++|+++|+|++++.  .+.+.+++..      ++.++.
T Consensus        13 ~~vIlAaG~g~R~~----~~~pK~l~~i~gkpli~~~l~~l~~~g~~~iivv~~~~--~~~i~~~~~~------~i~~v~   80 (468)
T 1hm9_A           13 FAIILAAGKGTRMK----SDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHK--AELVEEVLAG------QTEFVT   80 (468)
T ss_dssp             EEEEECCCCCGGGC----CSSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTT--HHHHHHSSSS------SSEEEE
T ss_pred             cEEEEcCCCCccCC----CCCCcEeeEECCccHHHHHHHHHHhcCCCCEEEEECCC--HHHHHHHhCC------CcEEEe
Confidence            69999999999994    47899999999999999999999999999999999865  2355555432      466776


Q ss_pred             cCCCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849           84 VPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (365)
Q Consensus        84 ~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (365)
                      ++...|++++++.+++++.  .++|++++||.  +.+.+++.+++.|++.+++++++..+..                 +
T Consensus        81 ~~~~~G~~~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~-----------------~  143 (468)
T 1hm9_A           81 QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD-----------------N  143 (468)
T ss_dssp             CSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS-----------------C
T ss_pred             CCccCChHHHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccC-----------------C
Confidence            6677899999999988885  46799999997  6678899999999988888888766532                 2


Q ss_pred             CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccc----ccccc
Q 017849          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKF----QSLKQ  235 (365)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~----~s~~~  235 (365)
                      +..|+++.+|+++++ ..+.+++....              ....+.++++|+|+|+++.|.+++++....    .....
T Consensus       144 ~~~~g~v~~d~~g~v-~~~~ek~~~~~--------------~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~  208 (468)
T 1hm9_A          144 PFGYGRIVRNDNAEV-LRIVEQKDATD--------------FEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYIT  208 (468)
T ss_dssp             CTTSCEEEECTTCCE-EEEECTTTCCT--------------TGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTT
T ss_pred             CCceeEEEECCCCCE-EEEEECCCCCh--------------HHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHH
Confidence            556888888887764 56653221000              012357899999999999776665542211    01125


Q ss_pred             chhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEE
Q 017849          236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVR  315 (365)
Q Consensus       236 d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~r  315 (365)
                      |+++.+++.+                                                      .++++|++  +|||..
T Consensus       209 d~~~~l~~~g------------------------------------------------------~~v~~~~~--~g~~~~  232 (468)
T 1hm9_A          209 DVIGIFRETG------------------------------------------------------EKVGAYTL--KDFDES  232 (468)
T ss_dssp             HHHHHHHHHT------------------------------------------------------CCEEEEEC--SSGGGG
T ss_pred             HHHHHHHHCC------------------------------------------------------CEEEEEEc--CChHHh
Confidence            6677665442                                                      34678887  667755


Q ss_pred             --eCCHHHHHHHhHHHhhh
Q 017849          316 --LNSIQAFMDINRDVIGE  332 (365)
Q Consensus       316 --i~~~~~Y~~~n~~~l~~  332 (365)
                        |+++..|.++++.+..+
T Consensus       233 i~i~t~~dl~~a~~~~~~~  251 (468)
T 1hm9_A          233 LGVNDRVALATAESVMRRR  251 (468)
T ss_dssp             CCCCSHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHH
Confidence              77999999998876543

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.95  E-value=4.6e-26  Score=210.32  Aligned_cols=184  Identities=20%  Similarity=0.326  Sum_probs=142.9

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      .|+|||||||.|+||+|+ |..+||+|+|++|||||+|+|+.+..+|+++|+|+++..+ .+.+.+++.+...-...+.+
T Consensus         3 ~m~aIILAgG~GtRl~pl-T~~~pK~llpi~gkpli~~~l~~l~~~gi~~Iivv~~~~~-~~~i~~~l~~g~~~g~~i~~   80 (295)
T 1lvw_A            3 HMKGIVLAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRD-LPLYRDLLGDGSQFGVRFSY   80 (295)
T ss_dssp             SCEEEEECCCCCSTTTTT-TTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTSEEEE
T ss_pred             ceEEEEECCCCCCccccc-cCCCCceecEECCeeHHHHHHHHHHHCCCCeEEEEeccch-HHHHHHHhhhccccCceEEE
Confidence            478999999999999999 9999999999999999999999999999999999886332 34677777641000223455


Q ss_pred             EEcCCCCChHHHHHHHHHHcCCCcEEEEeCCcc-cCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCC
Q 017849           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV-SDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i-~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (365)
                      +.++.+.|++++++.+.+++.+++++++.||.+ .+.++..+++.|.+.++.++++...+.                 ++
T Consensus        81 ~~~~~~~G~~~al~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~-----------------dp  143 (295)
T 1lvw_A           81 RVQEEPRGIADAFIVGKDFIGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR-----------------DP  143 (295)
T ss_dssp             EECSSCCCGGGHHHHTHHHHTTSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS-----------------CC
T ss_pred             eeCCCCCChHHHHHHHHHHhCCCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECC-----------------Cc
Confidence            666677899999999998887677888889964 367899999999776667777655432                 25


Q ss_pred             CcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~  223 (365)
                      ..|+++.+|+++++ ..+.+     |+.             ...++++++|+|+|+++++..+
T Consensus       144 ~~~g~v~~d~~g~v-~~~~e-----kp~-------------~~~s~~~~~Giy~f~~~~l~~~  187 (295)
T 1lvw_A          144 RPFGVVEFDSEGRV-ISIEE-----KPS-------------RPKSNYVVPGLYFYDNQVVEIA  187 (295)
T ss_dssp             TTSEEEEECTTSBE-EEEEE-----SCS-------------SCSCSEECCSEEEECTTHHHHH
T ss_pred             ccCCEEEECCCCcE-EEEEE-----CCC-------------CCCCCEEEEEeEEEcHHHHHHH
Confidence            57899999988765 56653     321             1234689999999999998655

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.95  E-value=4.4e-27  Score=226.69  Aligned_cols=220  Identities=20%  Similarity=0.364  Sum_probs=159.5

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |+|||||||.|+||+|| |..+||+|+|++|+|||+|+|++|.++|+++|+|++++.     +.+++.+..   .++.++
T Consensus         1 m~aiIlA~G~g~R~~pl-t~~~~K~ll~i~g~pli~~~l~~l~~~~~~~i~vv~~~~-----i~~~~~~~~---~~i~~~   71 (401)
T 2ggo_A            1 MKAFILAAGSGERLEPI-THTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSK-----NKEYFEKKL---KEISIV   71 (401)
T ss_dssp             CEEEEECCCCCGGGTTG-GGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG-----GHHHHHHHC---TTCEEE
T ss_pred             CeEEEEcCcCccccCcc-cCCCCcceeeECCEeHHHHHHHHHHHCCCCEEEEEeCHH-----HHHHhhccC---CcEEEE
Confidence            57999999999999999 999999999999999999999999999999999999843     455555421   146666


Q ss_pred             EcCC-CCChHHHHHHHHHHcCCCcEEEEeCCcccC--CChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849           83 TVPE-DVGTAGALRAIAHHLTAKDVLVVSGDLVSD--VPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (365)
Q Consensus        83 ~~~~-~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (365)
                      ..+. ..|++++++.+.+   .++++++.||+.+.  .+++.+++     .+++++++.+..                 +
T Consensus        72 ~~~~~~~g~~~~l~~~~~---~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~-----------------~  126 (401)
T 2ggo_A           72 TQKDDIKGTGAAILSAKF---NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVS-----------------N  126 (401)
T ss_dssp             ECCTTCCBSTTTGGGCCC---SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECS-----------------C
T ss_pred             eCCCCCCChHHHHHHhcc---CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcC-----------------C
Confidence            6665 6888888876654   47799999998765  45666654     355676665432                 2


Q ss_pred             CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCc----ccccccc
Q 017849          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQ  235 (365)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~----~~~s~~~  235 (365)
                      +..|+++..++++++ ..+.+     ++.             ...++++++|+|+|++++|..+ ++..    +..++ .
T Consensus       127 ~~~~~~v~~~~~g~v-~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~-~  185 (401)
T 2ggo_A          127 PKDYGVLVLDNQNNL-SKIIE-----KPE-------------IPPSNLINAGIYKLNSDIFTYL-DKISISERGELEL-T  185 (401)
T ss_dssp             CSSSCEEEECTTSSE-EEEEC-----SCS-------------SCSCSEEEEEEEEEETHHHHHH-HHSCCCSSSCBCH-H
T ss_pred             CcceeEEEECCCCeE-EEEEE-----CCC-------------CCCCcEEEEEEEEEcHHHHHHh-hhcCcCCCCceEH-H
Confidence            446788888877764 45542     221             1245789999999999999755 3321    01112 2


Q ss_pred             chhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEE
Q 017849          236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVR  315 (365)
Q Consensus       236 d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~r  315 (365)
                      ++++.+ ..+                                                      .++++|..  +++|..
T Consensus       186 ~~~~~~-~~g------------------------------------------------------~~v~~~~~--~~~~~d  208 (401)
T 2ggo_A          186 DAINLM-AKD------------------------------------------------------HRVKVIEY--EGYWMD  208 (401)
T ss_dssp             HHHHHH-HHH------------------------------------------------------SCEEEEEC--CSCEEE
T ss_pred             HHHHHH-HCC------------------------------------------------------CcEEEEEe--cceEEc
Confidence            455543 221                                                      23566666  569999


Q ss_pred             eCCHHHHHHHhHHHhhhhc
Q 017849          316 LNSIQAFMDINRDVIGEAN  334 (365)
Q Consensus       316 i~~~~~Y~~~n~~~l~~~~  334 (365)
                      |+|+..|.++++.++.++.
T Consensus       209 I~t~edl~~a~~~l~~~~~  227 (401)
T 2ggo_A          209 IGKPWNIIDVNKWALDNLV  227 (401)
T ss_dssp             CCSHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcc
Confidence            9999999999999998753

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.95  E-value=4.1e-27  Score=219.03  Aligned_cols=192  Identities=16%  Similarity=0.197  Sum_probs=130.1

Q ss_pred             CcceEEEEcCCCCCCCCCCCCC-CCCceecee-CCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCc-
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSK-EVPKALLPV-ANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRL-   77 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~-~~pK~llpv-~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~-   77 (365)
                      |+|.|||||||.|+||+|| |. .+||+|+|+ +|+|||+|+++++.++ +++|+|++++... +.+.+++.+.+  .. 
T Consensus         3 ~~~~avIlAgG~gtRl~pl-t~~~~pK~ll~i~gg~pli~~~l~~l~~~-~~~i~vv~~~~~~-~~i~~~~~~~~--~~~   77 (308)
T 2qh5_A            3 LKIKNILLSGGSGKRLWPL-SRSLYPKQFLKLFDHKSLFELSFKRNASL-VDETLIVCNEKHY-FLALEEIKNEI--KNK   77 (308)
T ss_dssp             CCEEEEEECC--------------CCGGGCTTBTTBCHHHHHHHHHHTT-CSEEEEEEEGGGH-HHHHHHTTTTC--SSC
T ss_pred             CccEEEEEcCCCCccCCcc-CCCCCCCEEEECCCCCCHHHHHHHHHHcc-CCCEEEEEChhHH-HHHHHHHHHhh--CCC
Confidence            5689999999999999999 85 799999999 5999999999999999 9999999986532 36677776511  12 


Q ss_pred             ceEEEEcCCCCChHHHHHHHHHHcCCC-cEEEEeCCccc-CCC-hHHHHHH---HHhcCCeEEEEEeeeccCCCccCCCC
Q 017849           78 HVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGDLVS-DVP-PGAVTAA---HRRHDAVVTAMICSVPVSGLSEAGSS  151 (365)
Q Consensus        78 ~v~i~~~~~~~gt~~al~~~~~~i~~~-~~lv~~~D~i~-~~~-l~~~l~~---h~~~~a~~t~l~~~~~~~~~~~~~~~  151 (365)
                      .+.++.++...|++++++.+...+..+ .|++++||.++ +.+ +..+++.   |.+.++.+|+.+....          
T Consensus        78 ~~~~i~~~~~~gt~~al~~a~~~l~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~----------  147 (308)
T 2qh5_A           78 SVGFLLESLSKNTANAIALSALMSDKEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDK----------  147 (308)
T ss_dssp             EEEEEEESSCCCHHHHHHHHHHTSCTTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSS----------
T ss_pred             ccEEEeCCCCCChHHHHHHHHHHhCCCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCC----------
Confidence            345666777899999999998888534 49999999877 555 8899887   6777788888765432          


Q ss_pred             CCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          152 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       152 ~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                             .+..|+++..|+++++ ..+.++++...    ....+.      ..+.++++|+|+|++++|...++
T Consensus       148 -------~~~~~g~i~~d~~~~V-~~~~Ekp~~~~----~~~~~~------~g~~~~n~Giy~~~~~~ll~~l~  203 (308)
T 2qh5_A          148 -------PNTEFGYIESPNGLDV-KRFIEKPSLDK----AIEFQK------SGGFYFNSGMFVFQAGVFLDELK  203 (308)
T ss_dssp             -------CCTTSEEEECSSSSBC-SEEEESCCHHH----HHHHHH------HCCEEEEEEEEEEEHHHHHHHHH
T ss_pred             -------CCCCceEEEECCCCEE-EEEEECCChHH----HHHHhh------cCCeEEEeEEEEEEHHHHHHHHH
Confidence                   2457899988766654 45553322110    001110      12468999999999998644443

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.95  E-value=2.3e-26  Score=212.48  Aligned_cols=183  Identities=20%  Similarity=0.325  Sum_probs=141.4

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |+|||||||.|+||+|+ |..+||+|+|++|||||+|+++.|..+|+++|+|+++..+ .+.+.+++.+...-...+.++
T Consensus         4 m~aIILAgG~GtRl~pl-T~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~-~~~i~~~l~~g~~~g~~i~~~   81 (296)
T 1mc3_A            4 MKGIILAGGSGTRLHPI-TRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPED-KGYFQRLLGDGSEFGIQLEYA   81 (296)
T ss_dssp             CEEEEECCCCCGGGHHH-HTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEEE
T ss_pred             cEEEEECCCCCCcCCcc-cCCCCceeeEECCeeHHHHHHHHHHhCCCCcEEEEechhH-HHHHHHHHhcccccCceEEEe
Confidence            68999999999999999 9999999999999999999999999999999999886332 346777776411001234555


Q ss_pred             EcCCCCChHHHHHHHHHHcCCCcEEEEeCCcc-cCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCC
Q 017849           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV-SDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i-~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (365)
                      .++...|++++++.+.+++.+++++++.||.+ .+.++..+++.|.+.++.++++...+.                 ++.
T Consensus        82 ~~~~~~G~~~al~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~-----------------dp~  144 (296)
T 1mc3_A           82 EQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM-----------------DPE  144 (296)
T ss_dssp             ECSSCCCSTHHHHHTHHHHTTSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS-----------------CCS
T ss_pred             ccCCCCCHHHHHHHHHHHhCCCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECC-----------------Ccc
Confidence            66777999999999998887677888889964 467899999999766667777655432                 255


Q ss_pred             cceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~  223 (365)
                      .|+++.+|++++ +..+.+     |+.             ...++++++|+|+|+++++..+
T Consensus       145 ~yg~v~~d~~g~-v~~~~e-----kp~-------------~~~s~~~~~Giy~~~~~~l~~~  187 (296)
T 1mc3_A          145 RFGVVEFDDNFR-AISLEE-----KPK-------------QPKSNWAVTGLYFYDSKVVEYA  187 (296)
T ss_dssp             SSBBCEEETTEE-EEECCB-----SCS-------------SCSCSEEEEEEEECCTHHHHHH
T ss_pred             cCCEEEECCCCc-EEEEEE-----CCC-------------CCCCCEEEEEEEEEcHHHHHHH
Confidence            789999998775 456653     321             1235789999999999998654

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.94  E-value=2.6e-26  Score=207.85  Aligned_cols=168  Identities=14%  Similarity=0.143  Sum_probs=126.5

Q ss_pred             EEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHh-CCCCeEEEEecCcch-HHHHHHHHHhhhcCCcceEEE
Q 017849            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADA-ALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         5 avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~-~gi~~v~vv~~~~~~-~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +||||||.||||+|+ |..+||+|+||+|||||+|+|+++.+ +|+++|+|++++... .+.+.+++..+... ....++
T Consensus         2 ~iIlAaG~GtRl~pl-t~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~~~~~~~~~~~~~~~~-~~~~~~   79 (255)
T 4evw_A            2 IVIPMAGMSSRFFKA-GYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIK-QFYIAE   79 (255)
T ss_dssp             EEEECCSCCHHHHHT-TCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTTHHHHHHHHHHHHTCS-SEEEEE
T ss_pred             EEEEcCCCCcccccC-CCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhhhHHHHHHHHHHcCCC-CceEEE
Confidence            899999999999999 99999999999999999999999999 899999999986531 12333333322111 112345


Q ss_pred             EcCCCCChHHHHHHHHHHc------CCCcEEEEeCCccc-CCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCcc
Q 017849           83 TVPEDVGTAGALRAIAHHL------TAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD  155 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i------~~~~~lv~~~D~i~-~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~  155 (365)
                      .++...||++|++.+++.+      .+++|+|++||.++ +.++..+     ..+++.++++...+              
T Consensus        80 ~~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~--------------  140 (255)
T 4evw_A           80 LHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGG--------------  140 (255)
T ss_dssp             ESSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECC--------------
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecC--------------
Confidence            5677899999999999988      25679999999877 5666543     24567788776643              


Q ss_pred             CCCCCCcceEEEEcCCC--cEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHH
Q 017849          156 KTKKPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS  218 (365)
Q Consensus       156 ~~~~~~~~~~v~~d~~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~  218 (365)
                         .+ .||++..|++|  ++ ..+.+     |.               ..++++++|+|+|++.
T Consensus       141 ---~p-~yG~v~~d~~g~~~V-~~i~E-----K~---------------~~s~~~~~GiY~f~~~  180 (255)
T 4evw_A          141 ---GD-NWSFAKPEHAGSTKV-IQTAE-----KN---------------PISDLCSTGLYHFNRK  180 (255)
T ss_dssp             ---SS-CSCEEEESSTTCCBE-EEEES-----SS---------------CSSSEEEEEEEEESCH
T ss_pred             ---CC-ceeEEEECCCCCeEE-EEEEe-----cc---------------CccCcEEEeEEEECcH
Confidence               13 78999999876  64 56663     32               1357999999999986

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.94  E-value=7e-26  Score=222.01  Aligned_cols=180  Identities=18%  Similarity=0.289  Sum_probs=135.5

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||+    ..+||+|+|++|+|||+|++++|..+|+++|+|++++.  .+.+.+++..     .++.
T Consensus         7 ~~~~aiIlA~G~g~Rl~----~~~pK~l~~i~g~pli~~~l~~l~~~~~~~i~vv~~~~--~~~i~~~~~~-----~~~~   75 (459)
T 4fce_A            7 SSMSVVILAAGKGTRMY----SDLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHG--GELLKKTLAD-----PSLN   75 (459)
T ss_dssp             CCEEEEEEECCCCGGGC----CSSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSC--HHHHHHHC----------C
T ss_pred             CcceEEEECCCCCccCC----CCCCcccCeeCCeeHHHHHHHHHHhCCCCcEEEEeCCC--HHHHHHHhcc-----CCcE
Confidence            57899999999999994    47899999999999999999999999999999999865  3467776653     2455


Q ss_pred             EEEcCCCCChHHHHHHHHHHcCC-CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849           81 VATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (365)
                      ++.++...|++++++.+++++.. +++++++||.  +.+.+++.+++.|++  ++++++..+..                
T Consensus        76 ~v~~~~~~g~~~~i~~~~~~~~~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~----------------  137 (459)
T 4fce_A           76 WVLQAEQLGTGHAMQQAAPHFADDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLD----------------  137 (459)
T ss_dssp             EEECSSCCCHHHHHHHHGGGSCTTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECS----------------
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecC----------------
Confidence            66667789999999999998864 6799999996  677889999998865  45555554432                


Q ss_pred             CCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                       ++..|+++..| +++ +..+.++++....              ...+.++++|+|+|+++.|..+++.
T Consensus       138 -~~~~~g~v~~~-~g~-v~~~~ek~~~~~~--------------~~~~~~~~~Giy~~~~~~l~~~l~~  189 (459)
T 4fce_A          138 -NPSGYGRIVRE-NGD-VVGIVEHKDASDA--------------QREINEINTGILVANGRDLKRWLSL  189 (459)
T ss_dssp             -CCTTSCEEEEE-TTE-EEEEECGGGCCTT--------------GGGCCEEEEEEEEEEHHHHHHHHHT
T ss_pred             -CCCcccEEEeC-CCc-EEEEEECCCCChH--------------HhhccEEEEEEEEEEHHHHHHHHHH
Confidence             24568888887 454 4566532211100              1245789999999999988777654

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.94  E-value=1.3e-25  Score=219.99  Aligned_cols=231  Identities=13%  Similarity=0.217  Sum_probs=165.0

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||    ...+||+|+|++|||||+|+|++|.++|+++|+|++++.  .+.+.+++..     .++.
T Consensus         4 ~~~~aiIlA~G~g~Rl----~~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~-----~~~~   72 (456)
T 2v0h_A            4 KALSAVILAAGKGTRM----YSDLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHG--GDLMRTHLAN-----EQVN   72 (456)
T ss_dssp             CCEEEEEECCCCCGGG----CSSSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTT--HHHHHHHTTT-----CCCE
T ss_pred             CcceEEEECCCCCccc----CCCCCccccEECCccHHHHHHHHHHhCCCCcEEEEeCCC--HHHHHHHhhc-----CCcE
Confidence            5788999999999999    446899999999999999999999999999999999865  2466666643     1466


Q ss_pred             EEEcCCCCChHHHHHHHHHHcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCC
Q 017849           81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (365)
                      ++.++...|++++++.+++++. .+++++++||.  +.+.+++.+++.|++  ++++++..+..                
T Consensus        73 ~v~~~~~~g~~~~~~~~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~----------------  134 (456)
T 2v0h_A           73 WVLQTEQLGTAHAVQQAAPFFKDNENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLD----------------  134 (456)
T ss_dssp             EEECSCCCCHHHHHHHHGGGCCTTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECS----------------
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecC----------------
Confidence            7767778999999999998885 57799999996  667789999998876  56676655432                


Q ss_pred             CCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccc----ccc
Q 017849          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKF----QSL  233 (365)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~----~s~  233 (365)
                       ++..|+.+..| +++ +..+.++++.      ...        .....++++|+|+|+++.|..+++.....    ...
T Consensus       135 -~~~~~g~v~~~-~g~-v~~~~ek~~~------~~~--------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~  197 (456)
T 2v0h_A          135 -NPTGYGRIIRE-NGN-VVAIVEQKDA------NAE--------QLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYY  197 (456)
T ss_dssp             -SCTTSCEEEEE-TTE-EEEEECTTTC------CHH--------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCC
T ss_pred             -CCCccceEEEc-CCc-EEEEEECCCC------Chh--------HhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEE
Confidence             24567888777 554 4566532211      000        11347889999999999776666542211    011


Q ss_pred             ccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceE
Q 017849          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (365)
Q Consensus       234 ~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  313 (365)
                      -.|+++.+...+                                                      .++++|..++...+
T Consensus       198 ~~d~~~~~~~~g------------------------------------------------------~~v~~~~~~~~~~~  223 (456)
T 2v0h_A          198 LTDLIALANQDN------------------------------------------------------CQVVAVQATDVMEV  223 (456)
T ss_dssp             GGGHHHHHHHTT------------------------------------------------------CCEEEEECSCTGGG
T ss_pred             HHHHHHHHHHcC------------------------------------------------------CEEEEEEeCCcceE
Confidence            145555544332                                                      34577766322345


Q ss_pred             EEeCCHHHHHHHhHHHhh
Q 017849          314 VRLNSIQAFMDINRDVIG  331 (365)
Q Consensus       314 ~ri~~~~~Y~~~n~~~l~  331 (365)
                      ..|+|+..|.++++.+..
T Consensus       224 ~~I~tpeDl~~a~~~l~~  241 (456)
T 2v0h_A          224 EGANNRLQLAALERYFQN  241 (456)
T ss_dssp             CCCSSHHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHH
Confidence            689999999999987654

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.92  E-value=1.5e-24  Score=196.17  Aligned_cols=168  Identities=16%  Similarity=0.247  Sum_probs=119.0

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |+|.|||||||.|+||+|| |..+||+|+|++|+|||+|+++++.++|+++|+|++++..  +.+.++...     +++.
T Consensus        24 ~~~~aiIlAaG~gtRl~pl-t~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~-----~~~~   95 (254)
T 1jyk_A           24 IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK--EQFDYLKEK-----YGVR   95 (254)
T ss_dssp             CCCEEEEEECSCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTG--GGGTHHHHH-----HCCE
T ss_pred             cCceEEEECCCCcccCCcc-cCCCCCEEeeECCEEHHHHHHHHHHHCCCCeEEEEeCCcH--HHHHHHHHh-----CCcE
Confidence            4688999999999999999 9999999999999999999999999999999999998653  345444432     2466


Q ss_pred             EEEcCC--CCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (365)
Q Consensus        81 i~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (365)
                      ++..+.  ..|++++++.+++.+.  ++++++||+++..++   ++.+.+.++.+|+.   ..  +|             
T Consensus        96 iv~~~~~~~~g~~~al~~a~~~~~--~~lv~~~D~~~~~~~---~~~~~~~~~~~t~~---~~--~~-------------  152 (254)
T 1jyk_A           96 LVFNDKYADYNNFYSLYLVKEELA--NSYVIDADNYLFKNM---FRNDLTRSTYFSVY---RE--DC-------------  152 (254)
T ss_dssp             EEECTTTTTSCTHHHHHTTGGGCT--TEEEEETTEEESSCC---CCSCCCSEEEEECE---ES--SC-------------
T ss_pred             EEECCCccCCCcHHHHHHHHHHCC--CEEEEeCCcccCHHH---HHHHHhCCceEEEE---cc--cC-------------
Confidence            666543  5799999998888773  589999997665442   22222233333332   11  11             


Q ss_pred             CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~  223 (365)
                       ...|+++ +|++|++ ..+.+     ++                ...++++|+|+|+++.+..+
T Consensus       153 -~~~~~v~-~d~~g~v-~~~~e-----~~----------------~~~~~~~Giy~~~~~~~~~l  193 (254)
T 1jyk_A          153 -TNEWFLV-YGDDYKV-QDIIV-----DS----------------KAGRILSGVSFWDAPTAEKI  193 (254)
T ss_dssp             -SSCCEEE-ECTTCBE-EEEEC-----CC----------------SSEEBCCSEEEECHHHHHHH
T ss_pred             -CCCeEEE-ECCCCeE-EEEEE-----CC----------------CCCcEEEEEEEEcHHHHHHH
Confidence             1246655 7877764 45542     21                13578999999999755433

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.92  E-value=9.6e-24  Score=190.69  Aligned_cols=191  Identities=18%  Similarity=0.204  Sum_probs=136.3

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||    .   ||+|+|++|||||+|+++++..+|+++|+|+++.    +.+.+++..+     ++.
T Consensus         1 M~~~aiIlA~G~stRl----p---~K~L~~i~GkPli~~~l~~l~~~~~~~ivVv~~~----~~i~~~~~~~-----g~~   64 (252)
T 3oam_A            1 MSFTVVIPARYQSTRL----P---GKPLADIGGKPMIQWVYEQAMQAGADRVIIATDD----ERVEQAVQAF-----GGV   64 (252)
T ss_dssp             CCEEEEEECCCCCSSS----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHHT-----TCE
T ss_pred             CceEEEEecCcCCCCC----C---CcceeeECCEEHHHHHHHHHHhCCCCeEEEECCH----HHHHHHHHHc-----CCE
Confidence            8999999999999999    3   7999999999999999999999999999999862    4677777642     455


Q ss_pred             EEE--cCCCCChHHHHHHHHHHc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849           81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (365)
Q Consensus        81 i~~--~~~~~gt~~al~~~~~~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (365)
                      ++.  ++...|+++ +..+.+.+   ..+.|++++||.  +...++..+++.|.+.++++++++.+..  +|.++.    
T Consensus        65 v~~~~~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~--~~~~~~----  137 (252)
T 3oam_A           65 VCMTSPNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIE--DEAEVF----  137 (252)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEEC--CHHHHT----
T ss_pred             EEEcCCCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecC--CHHHhh----
Confidence            554  445688887 55566666   346799999995  6677899999999888888888877654  222210    


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                            ..+.+.|.+|++|+++ .|.++     +..-.+.-............++++|+|+|++++|..+...
T Consensus       138 ------~p~~g~vv~d~~g~v~-~fsr~-----~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~  198 (252)
T 3oam_A          138 ------NPNAVKVITDKSGYAL-YFSRA-----TIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDW  198 (252)
T ss_dssp             ------CTTSCEEEECTTSBEE-EEESS-----CSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHS
T ss_pred             ------CCCceEEEECCCCeEE-EEeCC-----CCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcC
Confidence                  1123889999988764 55432     2111111000000000235789999999999999887654

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.91  E-value=6e-24  Score=199.62  Aligned_cols=190  Identities=19%  Similarity=0.231  Sum_probs=133.5

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCC-cchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~g-kplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |.+||||||.||||+||++..+||+|+|++| +|||+|+++++..+ |+++|+|++++.+. ..+.+++...    ....
T Consensus         2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~-~~i~~~l~~~----~~~~   76 (336)
T 2x65_A            2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYV-ERTKKELPEL----PDEN   76 (336)
T ss_dssp             CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGH-HHHHHHCTTS----CGGG
T ss_pred             eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHH-HHHHHHhhcc----ccce
Confidence            6899999999999999933789999999999 99999999999997 89999999986532 3566666542    1123


Q ss_pred             EEEcCCCCChHHHHHHHHHHcC-CCcEEEEeCCcccCC--ChH----HHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849           81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDV--PPG----AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~i~~~--~l~----~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (365)
                      ++.++...||++++..+...+. ++.+++++||+++..  ++.    .+++.|++.++.+|+.+.+..            
T Consensus        77 ii~e~~~~gta~ai~~a~~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~------------  144 (336)
T 2x65_A           77 IIAEPMKKNTAPACFIGTKLADDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTR------------  144 (336)
T ss_dssp             EEEESSCCCHHHHHHHHHTTSCTTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCS------------
T ss_pred             EEeCCCCCCcHHHHHHHHHhhCCCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeeccc------------
Confidence            5666778999999998877664 345999999987653  444    444557665777887664432            


Q ss_pred             ccCCCCCCcceEEEEcCC----CcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHH
Q 017849          154 KDKTKKPGRYNIIGMDPT----KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (365)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~----~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~  224 (365)
                           ....||++..+++    ...+..+.++++.+.    ..+.+.      ....++++|+|+|++++|...+
T Consensus       145 -----~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~----a~~~~~------~g~y~~n~Giy~~~~~~ll~~l  204 (336)
T 2x65_A          145 -----PETGYGYIEIGEELEEGVHKVAQFREKPDLET----AKKFVE------SGRFLWNSGMFLWKAREFIEEV  204 (336)
T ss_dssp             -----CCSSSEEEEEEEEEETTEEEEEEEEESCCHHH----HHHHHH------HTCEEEEEEEEEEEHHHHHHHH
T ss_pred             -----CCCCceEEEECCccCCCccEEEEEEECCChHH----HHHHHh------cCCeEEEeeeEEEEHHHHHHHH
Confidence                 1357899987753    123556664332211    011111      1125899999999999884333

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.91  E-value=4.6e-24  Score=200.50  Aligned_cols=185  Identities=21%  Similarity=0.260  Sum_probs=129.0

Q ss_pred             CcceEEEEcCCCCCCCCCCCC-CCCCceeceeCC-cchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCc
Q 017849            1 MDFQVVVLAGGTSKKLVPLVS-KEVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRL   77 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t-~~~pK~llpv~g-kplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~   77 (365)
                      |+|.+||||||.|+||+|| | ..+||+|+|++| +|||+|+++++..+ |+++++|++++.+. ..+.+++..     .
T Consensus         1 M~m~~VILAgG~GtRl~Pl-s~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~-~~i~~~l~~-----~   73 (337)
T 2cu2_A            1 MKTYALVMAGGRGERLWPL-SREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQE-AVARPYADG-----I   73 (337)
T ss_dssp             CCEEEEEECCCCCGGGTTT-CBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGH-HHHGGGCSS-----S
T ss_pred             CCeEEEEEcCCCcccCCcc-CCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHH-HHHHHHhcc-----C
Confidence            8899999999999999999 7 689999999999 99999999999998 89999999986532 233333321     2


Q ss_pred             ceEEEEcCCCCChHHHHHHHHHHc----CCCcEEEEeCCcccCC--ChHHHHH----HHHhcCCeEEEEEeeeccCCCcc
Q 017849           78 HVEVATVPEDVGTAGALRAIAHHL----TAKDVLVVSGDLVSDV--PPGAVTA----AHRRHDAVVTAMICSVPVSGLSE  147 (365)
Q Consensus        78 ~v~i~~~~~~~gt~~al~~~~~~i----~~~~~lv~~~D~i~~~--~l~~~l~----~h~~~~a~~t~l~~~~~~~~~~~  147 (365)
                      .+  +.++...||+.++..+.. +    .++.+++++||+++..  .+..+++    .|++ ++.+|+.+.+..      
T Consensus        74 ~~--i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~~------  143 (337)
T 2cu2_A           74 RL--LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPTR------  143 (337)
T ss_dssp             EE--EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCSS------
T ss_pred             ce--EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccCC------
Confidence            22  455677899999988865 4    2467999999976643  3444444    3444 677777765432      


Q ss_pred             CCCCCCccCCCCCCcceEEEEcCC---CcEEEEeeccccccccccccHHHHhhcCcceecc-CcccceeeeeCHHHHHHH
Q 017849          148 AGSSGAKDKTKKPGRYNIIGMDPT---KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRA-DLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~v~~d~~---~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~-~l~~~giyi~s~~vl~~~  223 (365)
                                 .+..||++..+++   ...+..+.++++.+.    ....        +.+ .++++|+|+|++++|...
T Consensus       144 -----------~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~----a~~~--------~~~g~~~n~Giy~f~~~~ll~~  200 (337)
T 2cu2_A          144 -----------PETEYGYIRLGPREGAWYRGEGFVEKPSYAE----ALEY--------IRKGYVWNGGVFAFAPATMAEL  200 (337)
T ss_dssp             -----------CCSSSCEEEEEEEETTEEEEEEEECCCCHHH----HHHH--------HHTTCEEEEEEEEECHHHHHHH
T ss_pred             -----------CCCCceEEEECCcccccCeEEEEEeCCChHH----HHHH--------hhcCCEEEEEEEEEeHHHHHHH
Confidence                       2457899988754   123556664332111    0111        112 689999999999988444


Q ss_pred             Hh
Q 017849          224 LD  225 (365)
Q Consensus       224 ~~  225 (365)
                      ++
T Consensus       201 l~  202 (337)
T 2cu2_A          201 FR  202 (337)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.87  E-value=5e-21  Score=173.54  Aligned_cols=190  Identities=18%  Similarity=0.214  Sum_probs=132.8

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||    .   +|+|+|++|||||+|+++++..+|+++|+|+++.    +.+.+++..+     ++.
T Consensus        17 M~~~aIIlA~G~stRl----p---~K~L~~i~GkPmi~~~l~~l~~~~i~~IvV~t~~----~~i~~~~~~~-----g~~   80 (264)
T 3k8d_A           17 MSFVVIIPARYASTRL----P---GKPLVDINGKPMIVHVLERARESGAERIIVATDH----EDVARAVEAA-----GGE   80 (264)
T ss_dssp             -CCEEEEECCSCCSSS----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHHT-----TCE
T ss_pred             CceEEEEEcCCCCCCC----C---CcceeeECCeEHHHHHHHHHHhCCCCEEEEECCH----HHHHHHHHHc-----CCE
Confidence            7889999999999999    3   5999999999999999999999999999999862    3667766542     455


Q ss_pred             EEE--cCCCCChHHHHHHHHHHc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849           81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (365)
Q Consensus        81 i~~--~~~~~gt~~al~~~~~~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (365)
                      ++.  ++...|++. +..+.+.+   ..+.++++.||.  +....++.+++.|.+.+++++++..+..  ++.+++    
T Consensus        81 v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~--d~~~~~----  153 (264)
T 3k8d_A           81 VCMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIH--NAEEAF----  153 (264)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECC--SHHHHT----
T ss_pred             EEEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcC--CHHHcc----
Confidence            554  345677776 67776666   346799999995  6677899999999888888888876653  222221    


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                           ++... -|.+|++|+.+ .|.+     ++...+++...........+.+.++|+|+|++++|..+..
T Consensus       154 -----~p~~v-kVv~d~~g~~l-~fsr-----~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~  213 (264)
T 3k8d_A          154 -----NPNAV-KVVLDAEGYAL-YFSR-----ATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVN  213 (264)
T ss_dssp             -----CTTSC-EEEECTTSBEE-EEES-----SCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHH
T ss_pred             -----CCCce-EEEECCCCeEE-EEec-----CCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHh
Confidence                 12222 35678888764 5543     3322122111000000123578999999999999988754

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.87  E-value=3.9e-21  Score=173.41  Aligned_cols=190  Identities=17%  Similarity=0.236  Sum_probs=125.3

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||    .   ||+|+|++|||||+|+++.+..+|+++|+|+++.    +.+.+++..+     ++.
T Consensus         8 M~~~aIIlA~G~stRl----~---~K~L~~i~GkPli~~~l~~l~~~~i~~VvVvt~~----~~i~~~~~~~-----g~~   71 (256)
T 3tqd_A            8 MEFRVIIPARFDSTRL----P---GKALVDIAGKPMIQHVYESAIKSGAEEVVIATDD----KRIRQVAEDF-----GAV   71 (256)
T ss_dssp             -CCEEEEECCCC---C----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHHT-----TCE
T ss_pred             CCceEEEEcCCCCCCC----C---CCCeeeECCchHHHHHHHHHHhCCCCEEEEECCH----HHHHHHHHHc-----CCe
Confidence            6789999999999999    3   7999999999999999999999999999999863    3677777642     455


Q ss_pred             EEEc--CCCCChHHHHHHHHHHc---CCCcEEEEeCCc--ccCCChHHHHHHHHhc-CCeEEEEEeeeccCCCccCCCCC
Q 017849           81 VATV--PEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSG  152 (365)
Q Consensus        81 i~~~--~~~~gt~~al~~~~~~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~-~a~~t~l~~~~~~~~~~~~~~~~  152 (365)
                      ++..  +...|++. +..+.+.+   ..+.++++.||.  +....++.+++.|++. +++++++..+..  ++.+..   
T Consensus        72 v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~--~~~~~~---  145 (256)
T 3tqd_A           72 VCMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPIT--EVDELF---  145 (256)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECC--CHHHHT---
T ss_pred             EEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcC--CHHHhh---
Confidence            5543  44577765 77777777   346799999995  5567899999999874 556666655432  122111   


Q ss_pred             CccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHh-hcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          153 AKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILR-AVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       153 ~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~-~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                            ++..+. |.+|++|+.+ ++.+     ++...++.... ........+.+.+.|+|+|++++|..+..
T Consensus       146 ------~p~~vk-vv~d~~g~~l-~fsr-----~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~  206 (256)
T 3tqd_A          146 ------NPHSTK-VVLNRRNYAL-YFSH-----APIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLS  206 (256)
T ss_dssp             ------CTTSCE-EEECTTSBEE-EEES-----SCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHH
T ss_pred             ------CCCccE-EEECCCCEEe-EEec-----CCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHh
Confidence                  233333 5688888764 5543     22211110000 00000112578999999999999988754

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.83  E-value=1.5e-19  Score=161.07  Aligned_cols=178  Identities=18%  Similarity=0.191  Sum_probs=120.1

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||    .   ||+|+|++|+|||+|+++++.++ +++|+|++++    +.+.+++..+      +.
T Consensus         1 m~~~aiIlA~G~g~R~----~---~K~l~~i~g~pli~~~l~~~~~~-~~~i~v~~~~----~~i~~~~~~~------~~   62 (234)
T 2y6p_A            1 MRRAVIIPARLGSTRL----K---EKPLKNLLGKPLIRWVVEGLVKT-GERVILATDS----ERVKEVVEDL------CE   62 (234)
T ss_dssp             -CEEEEEECCSCCTTT----T---TGGGCEETTEEHHHHHHHHHHTT-TSCEEEEESC----HHHHHHHTTT------SE
T ss_pred             CceEEEEEcCCCCCCC----C---CCcceeECCEEHHHHHHHHHHHh-CCEEEEECCh----HHHHHHHHhc------eE
Confidence            8889999999999999    4   89999999999999999999999 9999999874    3566666532      34


Q ss_pred             EEEc--CCCCChHHHHHHHHHHcCCCcEEEEeCCc-ccC-CChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccC
Q 017849           81 VATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSD-VPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (365)
Q Consensus        81 i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~-~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (365)
                      ++..  +...|++.++ .+++.+..+.+++++||. +.+ .++..+++.|.+.++.++++.....     +         
T Consensus        63 ~~~~~~~~~~g~~~~~-~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-----~---------  127 (234)
T 2y6p_A           63 VFLTPSDLPSGSDRVL-YVVRDLDVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKE-----A---------  127 (234)
T ss_dssp             EEECCTTCCSHHHHHH-HHHTTCCCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSG-----G---------
T ss_pred             EEECCcccccchHHHH-HHHHhCCCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHH-----H---------
Confidence            4443  2356777765 456666556799999997 555 7899999999877755555543110     0         


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHh
Q 017849          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (365)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~  225 (365)
                      ...+..+. +..+++|++ ..+.+     ++....++    ..  .. ..+.++|+|+|+++.|..+..
T Consensus       128 ~~~~~~~~-~~~~~~g~v-~~~~e-----~~~~~~~~----~~--~~-~~~~~~giy~~~~~~l~~~~~  182 (234)
T 2y6p_A          128 YERPEDVK-VVLDREGYA-LYFSR-----SPIPYFRK----ND--TF-YPLKHVGIYGFRKETLMEFGA  182 (234)
T ss_dssp             GGCTTSCE-EEECTTSBE-EEEES-----SCCSCCSS----CC--SS-CCEEEEEEEEEEHHHHHHHHH
T ss_pred             hcCCCceE-EEEcCCCCE-eeeec-----CCCCcccc----cc--cc-eeeEEEEEEEcCHHHHHHHHh
Confidence            00122333 345666654 55553     21100000    00  01 356799999999999877654

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.80  E-value=9.6e-19  Score=157.58  Aligned_cols=186  Identities=19%  Similarity=0.207  Sum_probs=122.0

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHH-HHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVL-EQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L-~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      +.|||||+|.|+||    .   +|+|+|++|||||+|++ +.+..+++++|+|+++.    +.+.+++..     .++.+
T Consensus         2 ~~aiIlA~G~stR~----~---~K~L~~i~GkPli~~~i~~~~~~~~~~~vvVvt~~----~~i~~~~~~-----~g~~v   65 (253)
T 4fcu_A            2 KHIVIPARFSSSRL----P---GKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDD----ERIAEICRA-----EGVDV   65 (253)
T ss_dssp             EEEEEECCSCCTTS----T---TGGGSEETTEEHHHHHHHHHHTCTTCCEEEEEESC----HHHHHHHHT-----TTCCE
T ss_pred             eEEEEEeCCCCCCC----C---CCceeeECCeEhHHHHHHHHHHhcCCCEEEEECCH----HHHHHHHHH-----cCCeE
Confidence            47999999999999    3   49999999999999999 99998999999999973    366666653     24445


Q ss_pred             EE--cCCCCChHHHHHHHHHHcC---CCcEEEEeCCc--ccCCChHHHHHHHHhc-CCe-EEEEEeeeccCCCccCCCCC
Q 017849           82 AT--VPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRH-DAV-VTAMICSVPVSGLSEAGSSG  152 (365)
Q Consensus        82 ~~--~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~--i~~~~l~~~l~~h~~~-~a~-~t~l~~~~~~~~~~~~~~~~  152 (365)
                      +.  .+...|+ +++..+++.+.   .+.++++.||.  +....+..+++.|.+. ++. +|++. ...  ++.+     
T Consensus        66 ~~~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~-~~~--~~~~-----  136 (253)
T 4fcu_A           66 VLTSADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCE-PIH--ALDE-----  136 (253)
T ss_dssp             EECCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEE-ECC--CHHH-----
T ss_pred             EEeCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeE-EcC--CHHH-----
Confidence            44  3345666 47777777664   36799999994  6667899999999876 334 44443 321  1101     


Q ss_pred             CccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHH
Q 017849          153 AKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (365)
Q Consensus       153 ~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~  224 (365)
                          ..+|..+ -|..|++|+.+ ++.++     +..-.+..............+.++|+|+|++++|..+.
T Consensus       137 ----~~~p~~~-kvv~d~~g~~l-~fsr~-----~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~  197 (253)
T 4fcu_A          137 ----FQRDSIV-KVVMSKQNEAL-YFSRA-----TIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYV  197 (253)
T ss_dssp             ----HHCTTSC-EEEECTTSBEE-EEESS-----CCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHT
T ss_pred             ----ccCCCcc-EEEECCCCeEE-EecCC-----CCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHH
Confidence                0123343 46788888765 44422     11100000000000001246789999999999998875

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.80  E-value=4.9e-18  Score=154.02  Aligned_cols=188  Identities=16%  Similarity=0.207  Sum_probs=122.7

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||    .   +|+|+|++|+|||+|+++++..+|+++|+|++++    +.+.+++..     .++.
T Consensus         1 m~~~aiIlA~G~g~R~----~---~K~l~~~~gkpli~~~l~~l~~~~~~~ivvv~~~----~~i~~~~~~-----~~~~   64 (262)
T 1vic_A            1 MSFTVIIPARFASSRL----P---GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN----ENVADVAKS-----FGAE   64 (262)
T ss_dssp             -CCEEEEECCCCCSSS----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHH-----TTCE
T ss_pred             CCcEEEEEcCCCCCCC----C---CCccccCCCeEHHHHHHHHHHhCCCceEEEECCc----HHHHHHHHh-----cCCE
Confidence            8899999999999999    3   3999999999999999999999999999999874    246666653     2455


Q ss_pred             EEEcC--CCCChHHHHHHHHHHcC---CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCC
Q 017849           81 VATVP--EDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (365)
Q Consensus        81 i~~~~--~~~gt~~al~~~~~~i~---~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (365)
                      ++..+  ...|++ .+..+...+.   .+.+++++||.  +...++..+++.|.+.++++++++.+..  ++.+.     
T Consensus        65 ~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~-----  136 (262)
T 1vic_A           65 VCMTSVNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIH--DAEEL-----  136 (262)
T ss_dssp             EEECCCSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECC--CHHHH-----
T ss_pred             EEECCccccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecC--CHHHh-----
Confidence            55542  345665 4555555553   45699999995  5567899999999887777776665432  11110     


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHh-----hcCcceeccCcccceeeeeCHHHHHHHH
Q 017849          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILR-----AVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (365)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~-----~~~~~~~~~~l~~~giyi~s~~vl~~~~  224 (365)
                           ....+..+..+++|+++ .+.+     +.....++. +     +...-.+...+.++|+|+|++++|..+.
T Consensus       137 -----~~~~~~~~~~~~~g~v~-~f~~-----~~~~~~r~~-~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~  200 (262)
T 1vic_A          137 -----FNPNAVKVLTDKDGYVL-YFSR-----SVIPYDRDQ-FMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYV  200 (262)
T ss_dssp             -----TCTTSCEEEECTTSBEE-EEES-----SCSSCCHHH-HTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHH
T ss_pred             -----cCCCceEEEECCCCCEe-eeec-----CCCCcCCcc-ccccccccccccccceEEEEEEEEeeHHHHHHHH
Confidence                 01233445557667653 4432     211111111 0     0000012236789999999999887664

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.80  E-value=4.9e-18  Score=152.31  Aligned_cols=181  Identities=18%  Similarity=0.229  Sum_probs=120.9

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCC-CeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNI-KDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.|||||||.|+||    .   ||+|+|++|+|||+|+++.+..+|+ ++|+|++++    +.+.+++...     ++
T Consensus         1 m~~~aiIlA~G~~~R~----~---~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~----~~i~~~~~~~-----~~   64 (245)
T 1h7e_A            1 SKAVIVIPARYGSSRL----P---GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD----PRVEQAVQAF-----GG   64 (245)
T ss_dssp             CCEEEEEECCSCCSSS----T---TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC----HHHHHHHHHT-----TC
T ss_pred             CCeEEEEEcCCcCCCC----C---CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCc----HHHHHHHHHc-----CC
Confidence            8899999999999999    3   8999999999999999999999996 999999974    3566666542     45


Q ss_pred             EEEEc--CCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhc-CCeEEEEEeeeccCCCccCCCCCCc
Q 017849           80 EVATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSGAK  154 (365)
Q Consensus        80 ~i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~-~a~~t~l~~~~~~~~~~~~~~~~~~  154 (365)
                      .++..  +...|+++++ .+...+..+.+++++||.  +...++..+++.|.+. ++++++++.+..   +.+.      
T Consensus        65 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~------  134 (245)
T 1h7e_A           65 KAIMTRNDHESGTDRLV-EVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAIS---AAEA------  134 (245)
T ss_dssp             EEEECCSCCSSHHHHHH-HHHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEEC---HHHH------
T ss_pred             eEEeCCCccCCcHHHHH-HHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCC---HHHh------
Confidence            56553  3346776554 455555556799999995  4566799999999887 777776655431   1100      


Q ss_pred             cCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHH
Q 017849          155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (365)
Q Consensus       155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~  224 (365)
                         ..+.. ..+..+++|++ ..+.++     .....++    .   ...+.+.++|+|+|+++.|..+.
T Consensus       135 ---~~~~~-~~~~~~~~g~~-~~~~~~-----~~~~~r~----~---~~~~~~~~~g~y~~~~~~l~~~~  187 (245)
T 1h7e_A          135 ---AEPST-VKVVVNTRQDA-LYFSRS-----PIPYPRN----A---EKARYLKHVGIYAYRRDVLQNYS  187 (245)
T ss_dssp             ---TCTTS-CEEEECTTCBE-EEEESS-----CSSCCTT----G---GGCCEEEEEEEEEEEHHHHHHGG
T ss_pred             ---cCCCC-cEEEECCCCcE-EEeecC-----CCCCCcc----c---ccCceeEEEEEEEcCHHHHHHHH
Confidence               01111 12233555654 444421     1100000    0   01125679999999999886654

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.76  E-value=2.3e-17  Score=146.83  Aligned_cols=168  Identities=15%  Similarity=0.193  Sum_probs=106.7

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      ++.|||||||.|+||+|+     ||+|+|++|+|||+|+++++..+ +++|+|++ +..  +.+.+++...+  ..++.+
T Consensus        18 ~~~~iIlA~G~g~R~~~~-----~K~l~~i~g~pli~~~l~~l~~~-~~~i~vv~-~~~--~~~~~~~~~~~--~~~~~~   86 (232)
T 2xme_A           18 LMKAVILAAGLGTRLGGV-----PKPLVRVGGCEIILRTMKLLSPH-VSEFIIVA-SRY--ADDIDAFLKDK--GFNYKI   86 (232)
T ss_dssp             CEEEEEEECC------CC-----CGGGCEETTEEHHHHHHHHHGGG-EEEEEEEE-STT--HHHHHHHHTTS--CCCEEE
T ss_pred             cceEEEECCcCcCcCCCC-----CcEEeEECCEEHHHHHHHHHHHh-CCEEEEEe-CCh--HHHHHHHHHhc--CCcEEE
Confidence            578999999999999654     89999999999999999999998 99999998 442  35555543221  124666


Q ss_pred             EEcCCC-CChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCC
Q 017849           82 ATVPED-VGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (365)
Q Consensus        82 ~~~~~~-~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (365)
                      +..+.. .|++++++.+++.+. +++++++||..++.+   +++...+.. . +++......               ..+
T Consensus        87 v~~~~~~~g~~~~i~~a~~~~~-~~~lv~~~D~p~~~~---~~~~l~~~~-~-~~~~~~~~~---------------~~~  145 (232)
T 2xme_A           87 VRHDRPEKGNGYSLLVAKNHVE-DRFILTMGDHVYSQQ---FIEKAVRGE-G-VIADREPRF---------------VDI  145 (232)
T ss_dssp             EECSCGGGCHHHHHHTTGGGCC-SSEEEEETTEEECHH---HHHHHTTCC-E-EEEESSCSS---------------SCT
T ss_pred             EECCCCCCCcHHHHHHHHHHCC-CCEEEEcCCcccCHH---HHHHHHhCC-C-cEEEccccc---------------cCC
Confidence            665543 799999999988885 679999999876433   223322221 1 222211100               012


Q ss_pred             CcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~  223 (365)
                      ..++.+..+ +|+ +..+.+     +.               ...+++++|+|++++++|..+
T Consensus       146 ~~~~~v~~~-~g~-v~~~~~-----~~---------------~~~~~~~~g~~~~~~~~~~~l  186 (232)
T 2xme_A          146 GEATKIRVE-DGR-VAKIGK-----DL---------------REFDCVDTGFFVLDDSIFEHA  186 (232)
T ss_dssp             TTSCEEEEE-TTE-EEEEET-----TC---------------SSCSEEEEEEEEECTTHHHHH
T ss_pred             CcceEEEEc-CCE-EEEeec-----CC---------------CCcceEEEEEEEECHHHHHHH
Confidence            345556665 454 445542     21               123567899999999998754

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=99.74  E-value=2.8e-17  Score=147.69  Aligned_cols=129  Identities=14%  Similarity=0.160  Sum_probs=93.2

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.|||||||.|+||.+   ..+||+|+|++|||||+|+|+++.+++ +++|+|+++.... +.+.+.+..+..+ ..+
T Consensus         2 ~~~~aIIlAaG~g~Rm~~---~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~-~~~~~~~~~~~~~-~~~   76 (246)
T 3f1c_A            2 SLIYAQILAGGKGTRMGN---VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWM-NHAEDNIKKYISD-DRI   76 (246)
T ss_dssp             CCEEEEEECC-----C-C---SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGH-HHHHHHHHHHCCC-TTE
T ss_pred             CccEEEEECCccccccCC---CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHH-HHHHHHHHHhCCC-CCE
Confidence            346899999999999953   278999999999999999999999998 9999999986532 2345555543221 234


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC-------CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEE
Q 017849           80 EVATVPEDVGTAGALRAIAHHLT-------AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAM  136 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~-------~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l  136 (365)
                      .++  ....+..++++.+++.+.       .+.++++.||  ++....+..+++.+.+.++.++++
T Consensus        77 ~~~--~~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~  140 (246)
T 3f1c_A           77 VVI--EGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVI  140 (246)
T ss_dssp             EEE--ECCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEE
T ss_pred             EEE--CCCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEE
Confidence            443  345677888888877664       3569999999  577778999999999887766654

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=99.74  E-value=4.3e-17  Score=145.12  Aligned_cols=124  Identities=18%  Similarity=0.253  Sum_probs=83.8

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      +.|||||||.|+||++   ..+||+|+|++|+|||+|+++++.++ ++++|+|++++... +.+.+++..+. -......
T Consensus         3 ~~~iIlA~G~g~R~~~---~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~-~~~~~~~~~~~-~~~~~~~   77 (236)
T 2vsh_A            3 IYAGILAGGTGTRMGI---SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWV-SHAEDLVDKYL-PLYKERI   77 (236)
T ss_dssp             EEEEEEEC--------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGH-HHHHHHHHHHC-GGGGGGE
T ss_pred             eEEEEeCCccccccCC---CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHH-HHHHHHHHhcc-ccccCce
Confidence            6899999999999965   36899999999999999999999998 49999999986532 34666665431 0011111


Q ss_pred             EEcCCCCChHHHHHHHHHHc----C--C-CcEEEEeCCc--ccCCChHHHHHHHHhcCC
Q 017849           82 ATVPEDVGTAGALRAIAHHL----T--A-KDVLVVSGDL--VSDVPPGAVTAAHRRHDA  131 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i----~--~-~~~lv~~~D~--i~~~~l~~~l~~h~~~~a  131 (365)
                      .......|+.++++.++..+    .  . +.+++++||.  +...++..+++.|.+.++
T Consensus        78 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~  136 (236)
T 2vsh_A           78 IITKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA  136 (236)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE
T ss_pred             EEECCCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc
Confidence            12233467889999888776    2  3 5688899996  556689999999987665

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.71  E-value=3.2e-17  Score=145.45  Aligned_cols=123  Identities=15%  Similarity=0.117  Sum_probs=93.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.|||||||.|+||    .   ||+|+|++|+|||+|+++.+..++ +++|+|+++.    +.+.+++..+     ++
T Consensus         3 m~~~aiIlA~G~g~R~----~---~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~----~~i~~~~~~~-----~~   66 (228)
T 1ezi_A            3 KQNIAVILARQNSKGL----P---LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG----GLIAEEAKNF-----GV   66 (228)
T ss_dssp             CEEEEEEECCSSCSSS----T---TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESC----HHHHHHHHHT-----TC
T ss_pred             CceEEEEecCCCCCCC----C---CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCC----HHHHHHHHHc-----CC
Confidence            4456999999999999    4   899999999999999999999988 7999999973    2455555432     34


Q ss_pred             EEEEcC-----CCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEee
Q 017849           80 EVATVP-----EDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICS  139 (365)
Q Consensus        80 ~i~~~~-----~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (365)
                      .++..+     ...|++++++.+++.+.  .+.+++++||.  +...+++.+++.|.+.++++++...+
T Consensus        67 ~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~  135 (228)
T 1ezi_A           67 EVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACP  135 (228)
T ss_dssp             EEEECCC------CHHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEE
T ss_pred             EEEeCchHHcCCCCChHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEe
Confidence            443332     34677899999988774  25699999995  55667899998887777676665554

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.70  E-value=2.9e-16  Score=138.56  Aligned_cols=124  Identities=20%  Similarity=0.168  Sum_probs=92.0

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.|||||||.|+||+    ..+||+|+|++|+|||+|+++.+..++ +++|+|++++... +.+.+++.     ..++
T Consensus         1 m~~~~vIlA~G~g~R~~----~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~-~~~~~~~~-----~~~v   70 (223)
T 2xwl_A            1 MATVAVVPAAGSGERLR----AGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALT-DESKLVFG-----GEDS   70 (223)
T ss_dssp             -CEEEEEECCCCCGGGT----SSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGH-HHHHHHTC-----BTTE
T ss_pred             CceEEEEECCccCcccC----CCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHH-HHHHHHhc-----cCCe
Confidence            88999999999999993    458999999999999999999999988 9999999986531 23443332     1245


Q ss_pred             EEEEcCCCCChHHHHHHHHHHc-CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEE
Q 017849           80 EVATVPEDVGTAGALRAIAHHL-TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMI  137 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i-~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~  137 (365)
                      .++.  +..+.+++++.+++.+ ..+.+++++||.  +...++..+++.|. .+.++++.+
T Consensus        71 ~~~~--~~~~~~~~i~~al~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~  128 (223)
T 2xwl_A           71 VIVS--GGVDRTESVALALEAAGDAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPG  128 (223)
T ss_dssp             EEEE--CCSSHHHHHHHHHTTCTTCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEE
T ss_pred             EEEc--CCCCHHHHHHHHHHhcCCCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEE
Confidence            5443  3356789999998887 445688889995  45567899999883 233445443

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=99.68  E-value=2.6e-16  Score=139.41  Aligned_cols=120  Identities=17%  Similarity=0.237  Sum_probs=85.9

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      ++.|||||||.|+||    ...+||+|+|++|+|||+|+++.+..+ ++++|+|++++..  +.+.+++...+  ..++.
T Consensus         4 ~~~aiIlAaG~g~R~----~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~--~~~~~~~~~~~--~~~v~   75 (228)
T 2yc3_A            4 SVSVILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFF--RDIFEEYEESI--DVDLS   75 (228)
T ss_dssp             CEEEEEECCCCC-----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGG--HHHHHTTTTTS--SSEEE
T ss_pred             ceEEEEECCcccccc----CCCCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHH--HHHHHHHHHhC--CCcEE
Confidence            578999999999999    446899999999999999999999998 7999999998653  23444333211  12343


Q ss_pred             EEEcCCCCChHHHHHHHHHHcCC--CcEEEEeCC--cccCCChHHHHHHHHhcCC
Q 017849           81 VATVPEDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D--~i~~~~l~~~l~~h~~~~a  131 (365)
                      ++  ....|..++++.+++.+..  +.++++.||  ++...+++.+++.|.+.++
T Consensus        76 ~~--~~~~~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~  128 (228)
T 2yc3_A           76 FA--IPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGA  128 (228)
T ss_dssp             EE--CCCSSHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE
T ss_pred             EE--CCCCCHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHHHHHhcCc
Confidence            33  3347888999999888753  457888898  4556679999999877654

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=99.65  E-value=1.1e-16  Score=138.57  Aligned_cols=127  Identities=20%  Similarity=0.320  Sum_probs=89.4

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |+|||||||.|+||.|     +||+|+|++|+|||+|+++++..+++++|+|++++..  +.+.+++...+....++.++
T Consensus         1 m~aiIlA~G~s~R~~~-----~~K~l~~~~g~pli~~~l~~l~~~~~~~v~vv~~~~~--~~i~~~~~~~~~~~~~~~~~   73 (196)
T 3rsb_A            1 MDALIMAGGKGTRMGG-----VEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNT--PKTKEYINSAYKDYKNIVVI   73 (196)
T ss_dssp             CEEEEEC----CGGGG-----SCGGGCEETTEEHHHHHHHHHHSSSCCCEEEECCTTC--HHHHHHHHHHTTTTTEEEE-
T ss_pred             CEEEEECCCCCCcCCC-----CCccEEEECCEEHHHHHHHHHHHCCCCEEEEEeCCCh--HHHHHHHHhhccCCCCEEEE
Confidence            5799999999999943     7999999999999999999999999999999998653  46777776532211134443


Q ss_pred             EcCCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHh-----cCCeEEEEEe
Q 017849           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRR-----HDAVVTAMIC  138 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~-----~~a~~t~l~~  138 (365)
                       .+...|++++++.+++.+ .+.++++.||.  +....+..+++.|.+     .+.+..+++.
T Consensus        74 -~~~~~g~~~si~~al~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~  134 (196)
T 3rsb_A           74 -DTSGKGYIEDLNECIGYF-SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMI  134 (196)
T ss_dssp             --------CCCCCTTTTTC-SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEE
T ss_pred             -ECCCCCcHHHHHHHHHhC-CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEE
Confidence             344577888888887777 67899999996  667789999999986     5555544443

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=99.65  E-value=6.5e-16  Score=133.53  Aligned_cols=118  Identities=26%  Similarity=0.363  Sum_probs=90.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.+||||||.|+||      +.||+|+|++|+|||+|+++.+..+++++|+|++++.  .+.+.+++..     .++.
T Consensus         4 ~~~~~iIlA~G~~~R~------g~~K~l~~~~g~pll~~~l~~l~~~~~~~i~vv~~~~--~~~~~~~~~~-----~~~~   70 (197)
T 2wee_A            4 TQITGVVLAAGRSNRL------GTPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGA--ASAVRAAMAL-----DGTD   70 (197)
T ss_dssp             SEEEEEEEECCCCTTT------SSCGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTT--HHHHHHHSCC-----TTSE
T ss_pred             CceEEEEECCCCcccC------CCCeEcCeeCCccHHHHHHHHHHhcCCCcEEEEeCCC--HHHHHHHhcc-----CCCE
Confidence            5678999999999999      3799999999999999999999999999999999865  2355555432     2456


Q ss_pred             EEEcC-CCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeE
Q 017849           81 VATVP-EDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (365)
Q Consensus        81 i~~~~-~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~  133 (365)
                      ++..+ ...|++++++.+++.+.  .+.+++++||.  +....++.+++.  +.++++
T Consensus        71 ~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i  126 (197)
T 2wee_A           71 VVVVEDVERGCAASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV--GPATEI  126 (197)
T ss_dssp             EEECC----CCHHHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSE
T ss_pred             EEECCCcccCHHHHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCE
Confidence            66543 34799999999998873  35699999996  445678888877  344444

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=99.64  E-value=9.9e-16  Score=132.53  Aligned_cols=119  Identities=24%  Similarity=0.372  Sum_probs=92.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||    .  .||+|+|++|+|||+|+++.+..+++++|+|++++..  +.+.+++..     .++.
T Consensus         4 ~~~~~iIlA~G~~~R~----g--~~K~l~~~~g~pli~~~l~~l~~~~~~~i~vv~~~~~--~~~~~~~~~-----~~~~   70 (199)
T 2waw_A            4 SRVTGVVLAAGYSRRL----G--TPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAA--DEVLEKVEL-----DGLD   70 (199)
T ss_dssp             CCEEEEEEESSCCTTT----T--SCGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTH--HHHHHHSCC-----TTSE
T ss_pred             CceEEEEECCCCCCCC----C--CCEEeCEeCccCHHHHHHHHHHhCCCCcEEEEeCCCH--HHHHHHhcc-----CCCE
Confidence            4578999999999999    3  7999999999999999999999999999999998652  355555432     2455


Q ss_pred             EEEcC-CCCChHHHHHHHHHHc--CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEE
Q 017849           81 VATVP-EDVGTAGALRAIAHHL--TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVT  134 (365)
Q Consensus        81 i~~~~-~~~gt~~al~~~~~~i--~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t  134 (365)
                      ++..+ ...|++++++.+++.+  ..+.+++++||.  +...++..+++.  +.+++++
T Consensus        71 ~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~  127 (199)
T 2waw_A           71 IVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG--GRGATIA  127 (199)
T ss_dssp             EEECCCCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEE
T ss_pred             EEECCCcccCHHHHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEE
Confidence            65533 3578889999998887  346799999996  446678888877  4455443

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.5e-15  Score=146.37  Aligned_cols=193  Identities=12%  Similarity=0.134  Sum_probs=128.1

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHhC----CCC-eEEEEecCcchHHHHHHHHHhhhcC
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NIK-DLIVVVEGADAALRVGGWISAAYVD   75 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~~----gi~-~v~vv~~~~~~~~~i~~~~~~~~~~   75 (365)
                      ++.+||||||.||||    ....||+|+||+ |||||+++++.+...    |+. .++|+++.+. .+.+.+++++...-
T Consensus        92 k~avViLAGG~GTRm----gs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t-~e~t~~~~~~~~~f  166 (488)
T 2i5k_A           92 KLAVLKLNGGLGTSM----GCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNT-DKDTEHLIKKYSAN  166 (488)
T ss_dssp             GEEEEEECCCBSGGG----TCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTT-HHHHHHHHGGGCSS
T ss_pred             CceEEEEcCCCcccC----CCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCC-HHHHHHHHHhcccc
Confidence            456799999999999    678999999999 999999999999776    532 3666666333 45788888753111


Q ss_pred             CcceEEEEcC------------------------CCCChHHHHHHH-----HHHc---CCCcEEEEeCCcccC-CChHHH
Q 017849           76 RLHVEVATVP------------------------EDVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSD-VPPGAV  122 (365)
Q Consensus        76 ~~~v~i~~~~------------------------~~~gt~~al~~~-----~~~i---~~~~~lv~~~D~i~~-~~l~~~  122 (365)
                      ...+.++.|.                        .+.|+|+++...     ++.+   ..++++|+++|.+.. .|+. +
T Consensus       167 g~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~-~  245 (488)
T 2i5k_A          167 RIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK-I  245 (488)
T ss_dssp             SCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH-H
T ss_pred             CceEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH-H
Confidence            1234444344                        468999988743     3444   257899999998664 5786 6


Q ss_pred             HHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcce
Q 017849          123 TAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMD  202 (365)
Q Consensus       123 l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~  202 (365)
                      +..|...++++++.+.+...  |              ...||.+..+ +|+  ..+.+-.+..+..   ...+..    .
T Consensus       246 L~~~~~~~a~~t~~v~~~~~--p--------------~~~yG~Iv~~-dG~--~~iVE~~e~~~e~---~~~~~~----~  299 (488)
T 2i5k_A          246 LNHMIETGAEYIMELTDKTR--A--------------DVKGGTLISY-DGQ--VRLLEVAQVPKEH---IDEFKN----I  299 (488)
T ss_dssp             HHHHHHSCCSEEEEEEECCG--G--------------GSSSCEEEEE-TTE--EEEECGGGSCTTS---HHHHTC----T
T ss_pred             HHHHHhcCCcEEEEEEEecC--C--------------CCceeEEEEE-CCc--EEEEEeccCCHHH---Hhhccc----c
Confidence            68898999999998775431  1              1247877665 354  2333311111100   010111    1


Q ss_pred             eccCcccceeeeeCHHHHHHHHhc
Q 017849          203 IRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       203 ~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                      ......|+|+|+|+.+.|..++.+
T Consensus       300 ~~~~~~Ntgi~~f~~~~L~~~l~~  323 (488)
T 2i5k_A          300 RKFTNFNTNNLWINLKAVKRLIES  323 (488)
T ss_dssp             TTCCEEEEEEEEEEHHHHHHHHHT
T ss_pred             cccCEEEEEEEEEeHHHHHHHHhh
Confidence            123567999999999999988765

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=99.59  E-value=2e-15  Score=134.23  Aligned_cols=118  Identities=25%  Similarity=0.330  Sum_probs=93.3

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||. |||.+. +...||+|+|++|+|||+|+++.+..+++ +|+|++.. +   .+.+++        ++.
T Consensus         1 m~~~~vIlAaG~-tRl~~r-~~~~~K~l~~i~g~pll~~~l~~l~~~~~-~ivvv~~~-~---~i~~~~--------~~~   65 (232)
T 2dpw_A            1 MRPSAIVLAGGK-EAWAER-FGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGEN-P---GLVPAP--------ALT   65 (232)
T ss_dssp             CCCEEEEECCCB-CSGGGT-TTCSBGGGSEETTEETHHHHHHHHHHTTC-EEEEESCC-S---SCSSCC--------SEE
T ss_pred             CceeEEEECCCC-Cccccc-cCCCCceeeEECCEEHHHHHHHHHHhcCC-EEEEEeCh-H---HHhhhc--------CeE
Confidence            889999999999 777666 44589999999999999999999999998 88887552 1   222221        344


Q ss_pred             EEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEee
Q 017849           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICS  139 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (365)
                      +   +...|++++++.+++.+. +.+++++||.  +...++..+++ | ..++++++...+
T Consensus        66 ~---~~~~g~~~~i~~a~~~~~-~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~  120 (232)
T 2dpw_A           66 L---PDRGGLLENLEQALEHVE-GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVP  120 (232)
T ss_dssp             E---CCCSSHHHHHHHHHHTCC-SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEE
T ss_pred             e---cCCCCHHHHHHHHHHHcC-CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEee
Confidence            4   567899999999998886 7899999997  66677899998 6 556677766544

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=99.58  E-value=8e-15  Score=130.02  Aligned_cols=119  Identities=16%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.|||||||.|+||+    ...||+|+|++|+|||+|+++.+..++ +++|+|++++..  +.+.+ +....  ...+
T Consensus         5 ~~~~aiIlA~G~g~R~~----~~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~--~~~~~-~~~~~--~~~i   75 (231)
T 1vgw_A            5 RKNIALIPAAGIGVRFG----ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED--TFADK-VQTAF--PQVR   75 (231)
T ss_dssp             CCEEEEEECC--------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC--STHHH-HHHHC--TTSE
T ss_pred             CceEEEEEcccccccCC----CCCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccH--HHHHH-HHhcC--CCce
Confidence            56789999999999994    357999999999999999999999886 999999998653  24444 43321  1134


Q ss_pred             EEEEcCCCCChHHHHHHHHHHc-------CCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 017849           80 EVATVPEDVGTAGALRAIAHHL-------TAKDVLVVSGDL--VSDVPPGAVTAAHRRHD  130 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i-------~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~  130 (365)
                      .++  .+..|++++++.+++.+       ..+.+++++||.  +....+..+++.+.+.+
T Consensus        76 ~~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~  133 (231)
T 1vgw_A           76 VWK--NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAA  133 (231)
T ss_dssp             EEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCT
T ss_pred             EEE--cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcC
Confidence            333  45678999999887766       346799999994  44567899999887654

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=99.58  E-value=1.5e-14  Score=128.40  Aligned_cols=122  Identities=14%  Similarity=0.110  Sum_probs=93.9

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.|||||||.|+||    .   +|+|+|++|+|||+|+++.+..++ +++|+|++..    +.+.+++..+     ++
T Consensus         2 ~~~~aiIlA~G~s~R~----~---~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~----~~i~~~~~~~-----g~   65 (229)
T 1qwj_A            2 PHLAALVLARGGSKGI----P---LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH----DEIENVAKQF-----GA   65 (229)
T ss_dssp             CCEEEEEECCSCCSSS----S---CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESC----HHHHHHHHHT-----TC
T ss_pred             CcEEEEEEcCCCCCCC----C---CcccceECCEEHHHHHHHHHHhCCCcCEEEEECCh----HHHHHHHHHc-----CC
Confidence            7889999999999999    3   499999999999999999999998 6999999852    3566666532     45


Q ss_pred             EEEEcC-----CCCChHHHHHHHHHHcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEe
Q 017849           80 EVATVP-----EDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMIC  138 (365)
Q Consensus        80 ~i~~~~-----~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~  138 (365)
                      .++..+     ...+..+++..+++.+. .+.+++++||.  +...++..+++.|.+.+++.++.+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~v~~al~~~~~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~  132 (229)
T 1qwj_A           66 QVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVV  132 (229)
T ss_dssp             EEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred             EEEeChhhhcCCCCcHHHHHHHHHHhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence            555433     23344588888888773 46699999994  5567899999999887776554443

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=99.57  E-value=7.5e-14  Score=136.54  Aligned_cols=193  Identities=13%  Similarity=0.141  Sum_probs=128.7

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceecee---CCcchHHHHHHHHHh--------CC----CCeEEEEecCcchHHHHH
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLEL--------SN----IKDLIVVVEGADAALRVG   66 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv---~gkplI~~~L~~l~~--------~g----i~~v~vv~~~~~~~~~i~   66 (365)
                      ++.+||||||.||||    +...||+|+||   .|+|+|++.++.+..        .|    +..+++...+.  .+.+.
T Consensus       102 kvavViLAGG~GTRL----g~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t--~e~t~  175 (505)
T 1jv1_A          102 KVAVLLLAGGQGTRL----GVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRT--MESTK  175 (505)
T ss_dssp             CEEEEEECCCCCCTT----SCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTT--HHHHH
T ss_pred             ceEEEEEcCCccccC----CCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCC--HHHHH
Confidence            478999999999999    77899999999   799999999999876        25    65555554433  35788


Q ss_pred             HHHHh--hhc-CCcceEEEEc---------------------CCCCChHHHHHHHHH-----Hc---CCCcEEEEeCCcc
Q 017849           67 GWISA--AYV-DRLHVEVATV---------------------PEDVGTAGALRAIAH-----HL---TAKDVLVVSGDLV  114 (365)
Q Consensus        67 ~~~~~--~~~-~~~~v~i~~~---------------------~~~~gt~~al~~~~~-----~i---~~~~~lv~~~D~i  114 (365)
                      +++++  +++ ++-.+.++.+                     ..+.|+|+.+..+..     .+   ..++++|+++|.+
T Consensus       176 ~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~  255 (505)
T 1jv1_A          176 EFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNI  255 (505)
T ss_dssp             HHHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBT
T ss_pred             HHHHhhhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCcc
Confidence            88865  221 1112443332                     246899988775532     22   2478999999985


Q ss_pred             -cCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCcE-EEEeeccccccccccccH
Q 017849          115 -SDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF-LLHIATGAELEKDTRIRK  192 (365)
Q Consensus       115 -~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-l~~~~~~~~~ek~~~i~~  192 (365)
                       ...+...++..|..+++++++.+.+..                ..++.+|++..+. |+. ++.+.+     .    +.
T Consensus       256 L~~~~d~~~lg~~~~~~~~~~~~v~~k~----------------~~~e~~Gvl~~~d-g~~~vvEy~E-----~----p~  309 (505)
T 1jv1_A          256 LVKVADPRFIGFCIQKGADCGAKVVEKT----------------NPTEPVGVVCRVD-GVYQVVEYSE-----I----SL  309 (505)
T ss_dssp             TCCTTCHHHHHHHHHTTCSEEEEEEECC----------------STTCSCCEEEEET-TEEEEECGGG-----S----CH
T ss_pred             ccccchHHHHHHHHHcCCCEEEEEEEcc----------------CCccCcceEEEEC-CeEEEEEEee-----C----CH
Confidence             767677899999999999998776421                1255778887753 432 223322     1    11


Q ss_pred             HHHhh-cCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          193 SILRA-VGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       193 ~~l~~-~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                      ..... .+.-....++.++++|+|+.++|..+.++
T Consensus       310 ~~~~~~~~~g~~~~~~~N~~~~~f~l~~L~~i~~~  344 (505)
T 1jv1_A          310 ATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNV  344 (505)
T ss_dssp             HHHHCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred             HHhhhcccccccccceeeEEEEEecHHHHHHHHHh
Confidence            11111 01112234789999999999999888654

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=99.54  E-value=3.5e-14  Score=123.42  Aligned_cols=115  Identities=21%  Similarity=0.283  Sum_probs=87.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||+     ..||+|+|++|+|||+|+++.+.. ++++|+|++++..  +.   + ..     .++.
T Consensus         5 m~~~~iILAgG~s~Rmg-----~~~K~ll~i~G~pli~~~l~~l~~-~~~~ivvv~~~~~--~~---~-~~-----~~~~   67 (201)
T 1e5k_A            5 TTITGVVLAGGKARRMG-----GVDKGLLELNGKPLWQHVADALMT-QLSHVVVNANRHQ--EI---Y-QA-----SGLK   67 (201)
T ss_dssp             CSEEEEEECCCCCSSSC-----SSCGGGSEETTEEHHHHHHHHHHH-HCSCEEEECSSSH--HH---H-HT-----TSCC
T ss_pred             CcceEEEEcCCCCCcCC-----CCCCceeeECceeHHHHHHHHHHh-hCCEEEEEcCCcH--HH---H-hh-----cCCe
Confidence            57899999999999993     479999999999999999999984 5899999998542  12   2 11     2454


Q ss_pred             EEEcCC-C-CChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEE
Q 017849           81 VATVPE-D-VGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVT  134 (365)
Q Consensus        81 i~~~~~-~-~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t  134 (365)
                      ++..+. . .|++++++.+++.+..+.+++++||+  +....+..+++.  ..+++++
T Consensus        68 ~v~~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~~  123 (201)
T 1e5k_A           68 VIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQ--RKDAPVV  123 (201)
T ss_dssp             EECCCTTCCCSHHHHHHHHHHHCCSSEEEEEETTCTTCCTTHHHHHHHT--CTTCSEE
T ss_pred             EEecCCCCCCCHHHHHHHHHHhCCCCcEEEEeCCcCcCCHHHHHHHHhh--cCCCCEE
Confidence            554332 2 79999999999888767799999996  555667888776  3344443

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=99.54  E-value=1.2e-14  Score=125.97  Aligned_cols=114  Identities=19%  Similarity=0.270  Sum_probs=86.2

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||    .  .||+|+|++|+|||+|+++.+..+   +++|++++..  +.+.+++.      .++ 
T Consensus         1 M~~~~iIlAgG~g~Rm----g--~~K~l~~i~g~pll~~~l~~l~~~---~ivvv~~~~~--~~~~~~~~------~~~-   62 (197)
T 3d5n_A            1 MNIGVIILAAGEGKRF----G--GDKLLAKIDNTPIIMRTIRIYGDL---EKIIIVGKYV--NEMLPLLM------DQI-   62 (197)
T ss_dssp             CCEEEEEECSCCTTCC----C--SSGGGSBSSSSBHHHHHHHHTTTS---BCCEEECTTH--HHHGGGCT------TSC-
T ss_pred             CceEEEEECCcCcccC----C--CCeeeCEeCceEHHHHHHHHHHhC---CEEEEECCCH--HHHHHHhc------CCE-
Confidence            8899999999999999    3  489999999999999999999877   8888887541  23333322      245 


Q ss_pred             EEEcCC-CCChHHHHHHHHHHcCC-CcEEEEeCCc--ccCCChHHHHHHHHhcCCeE
Q 017849           81 VATVPE-DVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (365)
Q Consensus        81 i~~~~~-~~gt~~al~~~~~~i~~-~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~  133 (365)
                      ++..+. ..|++++++.+++.+.. +.+++++||.  +....+..+++.+ +.++++
T Consensus        63 ~v~~~~~~~G~~~si~~al~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~  118 (197)
T 3d5n_A           63 VIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKA  118 (197)
T ss_dssp             EEECTTGGGCHHHHHHHHHHHTTTSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSE
T ss_pred             EEECCCCCCCHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcE
Confidence            554333 47999999999988864 5799999996  4445678888776 444443

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=99.51  E-value=1.3e-14  Score=129.21  Aligned_cols=119  Identities=20%  Similarity=0.243  Sum_probs=89.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.|||||||.|+||    ....||+|+|++|+|||+|+++.+..++ +++|+|++++..  +.+.+ +... .. ..+
T Consensus         6 ~~~~~iIlA~G~g~R~----~~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~--~~~~~-~~~~-~~-~~v   76 (236)
T 1i52_A            6 LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGD--SRFAQ-LPLA-NH-PQI   76 (236)
T ss_dssp             CCEEEEEEECCCCGGG----CCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTC--CSGGG-SGGG-GC-TTE
T ss_pred             CceeEEEECCcCcccc----CCCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccH--HHHHH-HHhc-CC-CCE
Confidence            5789999999999999    4457999999999999999999999887 899999998542  12333 3221 11 134


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 017849           80 EVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHD  130 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~  130 (365)
                      .++.  ...|..++++.+++.+. .+.+++++||.  +....+..+++.+.+.+
T Consensus        77 ~~~~--~~~g~~~~i~~al~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~  128 (236)
T 1i52_A           77 TVVD--GGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSR  128 (236)
T ss_dssp             EEEE--CCSSHHHHHHHHHHTSTTCSEEEECCTTCTTCCHHHHHHHHGGGGTCS
T ss_pred             EEEC--CCCCHHHHHHHHHHhcCCCCEEEEEcCccccCCHHHHHHHHHHHHhcC
Confidence            4443  33688999999988874 46799999995  44456888888876655

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=99.49  E-value=7.1e-14  Score=124.14  Aligned_cols=118  Identities=20%  Similarity=0.238  Sum_probs=85.9

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      +.|||||||.|+||    ....||+|+|++|+|||+|+++.+..++ +++|+|++++... +.+.+++.  +    ...+
T Consensus        14 ~~aiILAaG~s~Rm----~~~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~--~----~~~~   82 (234)
T 1vpa_A           14 NVAILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF-EVVEKRVF--H----EKVL   82 (234)
T ss_dssp             EEEEEEECCCCGGG----CCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGH-HHHHTTCC--C----TTEE
T ss_pred             CeEEEEcCcchhhc----CCCCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHH-HHHHHHhc--c----CCce
Confidence            68999999999999    4457999999999999999999999998 8999999985431 12232222  1    1112


Q ss_pred             EEcCCCCChHHHHHHHHHHcC---CCcEEEEeCCc--ccCCChHHHHHHHHhcCC
Q 017849           82 ATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDA  131 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a  131 (365)
                      .......+..++++.+++.+.   .+.+++++||.  +....+..+++.+.+.++
T Consensus        83 ~~~~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~  137 (234)
T 1vpa_A           83 GIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGA  137 (234)
T ss_dssp             EEEECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE
T ss_pred             EEeCCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC
Confidence            222233457788888877763   34577888995  556678999998876554

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=99.49  E-value=2.8e-13  Score=120.16  Aligned_cols=113  Identities=18%  Similarity=0.234  Sum_probs=88.2

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      +.|||||||.|+||    ....||+|++++|+|||+|+++.+..++ +++|+|++++... +.+.+++..      .+.+
T Consensus         8 ~~aIIlAaG~g~Rm----g~~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~-~~~~~~~~~------~v~~   76 (231)
T 3q80_A            8 VVAIVPAAGSGERL----AVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRT-DEARQILGH------RAMI   76 (231)
T ss_dssp             EEEEEECCCCCTTT----CSSSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGH-HHHHHHHGG------GCEE
T ss_pred             eEEEEECCCCCccC----CCCCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHH-HHHHHHhcC------CeEE
Confidence            57999999999999    6678999999999999999999999885 8999999986532 244444332      3444


Q ss_pred             EEcCCCCChHHHHHHHHHHcCC----CcEEEEeCC--cccCCChHHHHHHHHh
Q 017849           82 ATVPEDVGTAGALRAIAHHLTA----KDVLVVSGD--LVSDVPPGAVTAAHRR  128 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~----~~~lv~~~D--~i~~~~l~~~l~~h~~  128 (365)
                      +.  ...+..++++.+++.+..    +.++++.||  ++....++.+++.+.+
T Consensus        77 v~--gg~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~  127 (231)
T 3q80_A           77 VA--GGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD  127 (231)
T ss_dssp             EE--CCSSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred             Ec--CCCchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence            43  334567899999888763    468899999  5777789999999876

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=99.45  E-value=1.8e-13  Score=121.87  Aligned_cols=113  Identities=23%  Similarity=0.275  Sum_probs=80.0

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |++.|||||||.|+||+    .. ||+|+|++|+|||+|+++.  ..++++|+|+++. ..    .+ +..     .++.
T Consensus        24 M~~~aiILAgG~s~Rm~----~~-~K~l~~i~gkpli~~~l~~--~~~~~~ivvv~~~-~~----~~-~~~-----~~v~   85 (236)
T 2px7_A           24 MEVSVLIPAAGNGLRLG----RG-PKAFLQVGGRTLLEWTLAA--FRDAAEVLVALPP-GA----EP-PKG-----LGAV   85 (236)
T ss_dssp             CCCEEEEECCC-----------C-CGGGCBCSSSBHHHHHHHH--TTTCSEEEEEECT-TC----CC-CTT-----CSCE
T ss_pred             CceEEEEEcCCCCccCC----CC-CCeEEEECCEEHHHHHHHh--cCCCCeEEEEeCH-HH----HH-hhc-----CCcE
Confidence            66679999999999994    34 9999999999999999999  7789999999984 11    11 211     2344


Q ss_pred             EEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeE
Q 017849           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~  133 (365)
                      ++.  +..|..++++.++..+..+.+++++||.  +....+..+++.+.+.++.+
T Consensus        86 ~~~--~~~~~~~~i~~al~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~i  138 (236)
T 2px7_A           86 FLE--GGATRQASVARLLEAASLPLVLVHDVARPFVSRGLVARVLEAAQRSGAAV  138 (236)
T ss_dssp             EEE--CCSSHHHHHHHHHHHCCSSEEEECCTTCCCCCHHHHHHHHHHHHHHSEEE
T ss_pred             EEe--CCCchHHHHHHHHHHcCCCeEEEecCccccCCHHHHHHHHHHHHhcCCeE
Confidence            443  3457889999998887656699999995  44566889999887655433

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=99.43  E-value=1.6e-13  Score=119.28  Aligned_cols=103  Identities=23%  Similarity=0.265  Sum_probs=80.6

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      ++.|||||||.|+||    .  .||+|+|++|+|||+|+++.+..+ +++|+|++++...     +++.       ++.+
T Consensus        14 ~~~~iILA~G~g~Rm----g--~~K~ll~i~g~pll~~~l~~l~~~-~~~i~vv~~~~~~-----~~~~-------~~~~   74 (201)
T 2e8b_A           14 VNTCYVLAGGKSKRF----G--EDKLLYEIKGKKVIERVYETAKSV-FKEVYIVAKDREK-----FSFL-------NAPV   74 (201)
T ss_dssp             CCEEEEEEESSCCCC----S--TTHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEESCSGG-----GGGG-------TCCE
T ss_pred             CceEEEECCCCCccC----C--CCcccceECceEHHHHHHHHHHHh-CCEEEEEeCcHHH-----hhcC-------CceE
Confidence            468999999999999    3  799999999999999999999988 9999999986531     1111       3555


Q ss_pred             EEcC-CCCChHHHHHHHHHHcCCCcEEEEeCCcc--cCCChHH-HH
Q 017849           82 ATVP-EDVGTAGALRAIAHHLTAKDVLVVSGDLV--SDVPPGA-VT  123 (365)
Q Consensus        82 ~~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~i--~~~~l~~-~l  123 (365)
                      +..+ ...|++++++.+++.+..+.+++++||+.  ....+.. ++
T Consensus        75 v~~~~~~~g~~~~i~~al~~~~~~~~lv~~~D~P~i~~~~i~~~l~  120 (201)
T 2e8b_A           75 VLDEFEESASIIGLYTALKHAKEENVFVLSGDLPLMKKETVLYVLE  120 (201)
T ss_dssp             EECCCSSCCHHHHHHHHHHHCSSSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             EecCCCCCCcHHHHHHHHHHcCCCCEEEEeCCcCcCCHHHHHHHHh
Confidence            5533 45899999999998887678999999963  3333555 44

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=99.42  E-value=3.1e-13  Score=127.72  Aligned_cols=115  Identities=18%  Similarity=0.250  Sum_probs=89.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHh-CCCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.+||||||.|+||    ....||+|+|++|+|||+|+++.+.. .++++|+|+++ .  .+.+.+++.       ++
T Consensus         2 mki~aIILAaG~ssRm----g~~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~--~~~i~~~~~-------~v   67 (371)
T 1w55_A            2 SEMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-N--ITYMKKFTK-------NY   67 (371)
T ss_dssp             CCEEEEEECCSCCTTT----CSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-C--HHHHHTTCS-------SS
T ss_pred             CccEEEEECCCCCccC----CCCCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-C--HHHHHHHhC-------CC
Confidence            5789999999999999    44679999999999999999999988 57999999998 3  233333221       14


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCC
Q 017849           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDA  131 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a  131 (365)
                      .++  ....|..++++.+++.+..+.++++.||.  +....++.+++.+.+.++
T Consensus        68 ~~v--~~g~g~~~sv~~aL~~l~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~a  119 (371)
T 1w55_A           68 EFI--EGGDTRAESLKKALELIDSEFVMVSDVARVLVSKNLFDRLIENLDKADC  119 (371)
T ss_dssp             EEE--ECCSSHHHHHHHHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGGCSE
T ss_pred             EEE--eCCCChHHHHHHHHHhcCCCeEEEEeCCcccCCHHHHHHHHHHHHhcCC
Confidence            444  33567889999998887667799999995  555678888888776543

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=99.41  E-value=1.3e-12  Score=113.95  Aligned_cols=114  Identities=18%  Similarity=0.255  Sum_probs=84.7

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |.|||||||.|+||    .  .||+|++++|+|||+|+++.+..+   +|+|+++..   +.+..+. .    ..++.++
T Consensus         1 m~aiILAgG~s~Rm----g--~~K~ll~~~G~pli~~~~~~l~~~---~vvvv~~~~---~~~~~~~-~----~~~~~~v   63 (208)
T 3ngw_A            1 MKVAVLVGGVGRRI----G--MEKTEVMLCGKKLIEWVLEKYSPF---QTVFVCRDE---KQAEKLS-S----RYEAEFI   63 (208)
T ss_dssp             CEEEEECCCCCTTT----T--SCGGGCEETTEEHHHHHHHHHTTS---EEEEECSSH---HHHHHHH-T----TSCSCEE
T ss_pred             CEEEEECCCchhhC----C--CCCcccEECCeeHHHHHHHHhcCC---CEEEEECCH---HHHHHHH-H----hcCCeEE
Confidence            57999999999999    4  789999999999999999999877   899998742   2333322 1    1245555


Q ss_pred             EcC-CCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEE
Q 017849           83 TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus        83 ~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~  135 (365)
                      ... ...|...+++.+++.+ .+.+ ++.||+  +....+..+++.+.+.++++.+
T Consensus        64 ~d~~~~~G~~~si~~gl~~~-~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~  117 (208)
T 3ngw_A           64 WDLHKGVGSIAGIHAALRHF-GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI  117 (208)
T ss_dssp             CCTTCCCSHHHHHHHHHHHH-SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             ecCCCCCChHHHHHHHHHHc-CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence            432 2367889999998877 6667 999995  4555688888887755555543

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=99.35  E-value=6.9e-12  Score=122.07  Aligned_cols=193  Identities=13%  Similarity=0.106  Sum_probs=124.4

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHhCCCC-----eEEEEecCcchHHHHHHHHH-h--h
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELSNIK-----DLIVVVEGADAALRVGGWIS-A--A   72 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~~gi~-----~v~vv~~~~~~~~~i~~~~~-~--~   72 (365)
                      ++.+||||||.||||    ....||+|+||+ |||+|++.++++...|..     .++|.++.. ..+.+.++++ +  +
T Consensus        75 k~avViLAGGlGTRL----g~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~-t~e~t~~~f~~~~~~  149 (505)
T 2oeg_A           75 STVVLKLNGGLGTGM----GLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFN-TSASTKSFLKARYPW  149 (505)
T ss_dssp             TEEEEEEECCCCGGG----TCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHH-HHHHHHHHHHHHCHH
T ss_pred             cceEEEEcCCccccc----CCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCC-CHHHHHHHHhhhhhc
Confidence            357899999999999    568999999999 999999999999887532     566666533 2457888887 3  3


Q ss_pred             hc-CCcceEEE-----------------E------cCCCCChHHHHHHH-----HHHc---CCCcEEEEeCCcccC-CCh
Q 017849           73 YV-DRLHVEVA-----------------T------VPEDVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSD-VPP  119 (365)
Q Consensus        73 ~~-~~~~v~i~-----------------~------~~~~~gt~~al~~~-----~~~i---~~~~~lv~~~D~i~~-~~l  119 (365)
                      ++ ++-.+.+.                 .      ...+.|+|+++...     ++.+   ..++++|.++|.+.. .|+
T Consensus       150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~  229 (505)
T 2oeg_A          150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK  229 (505)
T ss_dssp             HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH
T ss_pred             cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH
Confidence            21 11122211                 1      01246999988744     3332   247899999998774 577


Q ss_pred             HHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEc------CCCc-------E-EEEeecccccc
Q 017849          120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD------PTKQ-------F-LLHIATGAELE  185 (365)
Q Consensus       120 ~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d------~~~~-------~-l~~~~~~~~~e  185 (365)
                       .++..|.++++++++.+.+...  +              ...+|++..+      .+|+       . ++.+.+     
T Consensus       230 -~llg~~~~~~ad~~~~v~~k~~--~--------------d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse-----  287 (505)
T 2oeg_A          230 -RVLAYMEKEKIDFLMEVCRRTE--S--------------DKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQ-----  287 (505)
T ss_dssp             -HHHHHHHHHTCSEEEEEEECCT--T--------------CCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGG-----
T ss_pred             -HHHHHHHhcCCcEEEEEEEecC--C--------------ccceeEEEEecccccccCCccccccCceeEEEecc-----
Confidence             8899999999999998876531  1              2356777662      3454       1 222221     


Q ss_pred             ccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          186 KDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       186 k~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                          ++......... .....+.++...+|+-+.+..+++.
T Consensus       288 ----~p~e~~~~~~g-~~~f~~~Ninn~~~~l~~l~~~~~~  323 (505)
T 2oeg_A          288 ----CPKADMESFQD-INKYSFFNTNNLWIRLPVLLETMQE  323 (505)
T ss_dssp             ----SCGGGHHHHHC-TTTTCEEEEEEEEEEHHHHHHHHHH
T ss_pred             ----CChhhhhcccC-ccccCeeEEEEEEEEHHHHHHHHhh
Confidence                12111111100 1122456888889999988877664

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=99.22  E-value=2.5e-10  Score=111.27  Aligned_cols=193  Identities=11%  Similarity=0.155  Sum_probs=122.4

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHhC--------C------CCeEEEEecCcchHHH
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------N------IKDLIVVVEGADAALR   64 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~~--------g------i~~v~vv~~~~~~~~~   64 (365)
                      ++.+||||||.||||    +...||+|+||+   |+|+|++.++.+...        |      +..+++...+.  .+.
T Consensus       103 kvavvlLaGG~GTRL----g~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t--~~~  176 (486)
T 2yqc_A          103 EVAVLLMAGGQGTRL----GSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPT--RNA  176 (486)
T ss_dssp             CEEEEEEEESBCGGG----TCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGG--HHH
T ss_pred             CeEEEEEcCCccccC----CCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCC--HHH
Confidence            478999999999999    788999999999   999999999999876        5      66555555543  357


Q ss_pred             HHHHHHh--hhc-CCcceEEEEc--------C--------------CCCChHHHHHHHHH-----Hc---CCCcEEEEeC
Q 017849           65 VGGWISA--AYV-DRLHVEVATV--------P--------------EDVGTAGALRAIAH-----HL---TAKDVLVVSG  111 (365)
Q Consensus        65 i~~~~~~--~~~-~~~~v~i~~~--------~--------------~~~gt~~al~~~~~-----~i---~~~~~lv~~~  111 (365)
                      +.+++++  +++ +...+.+..|        +              .+.|+|+.+.....     .+   ..+++.+.+.
T Consensus       177 t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~v  256 (486)
T 2yqc_A          177 TESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCV  256 (486)
T ss_dssp             HHHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEET
T ss_pred             HHHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECC
Confidence            8888865  222 1112322221        1              25688887654422     22   2367888888


Q ss_pred             Cccc--CCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcC-CCc-EEEEeecccccccc
Q 017849          112 DLVS--DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP-TKQ-FLLHIATGAELEKD  187 (365)
Q Consensus       112 D~i~--~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~-~l~~~~~~~~~ek~  187 (365)
                      |.+.  ..|. .++..|..+++++++.+.+..  .|              ....|++.... +|+ .++.+.+.+     
T Consensus       257 DN~l~~~~Dp-~~lg~~~~~~~~~~~~vv~k~--~~--------------~e~~Gvl~~~~~dg~~~vvEy~E~~-----  314 (486)
T 2yqc_A          257 DNCLVKVADP-IFIGFAIAKKFDLATKVVRKR--DA--------------NESVGLIVLDQDNQKPCVIEYSEIS-----  314 (486)
T ss_dssp             TBTTCCTTCH-HHHHHHHHHTCSEEEEEEECC--ST--------------TCCCCEEEEETTTTEEEEECGGGSC-----
T ss_pred             CCceeeccCH-HHHHHHHHcCCCEEEEEEEcC--CC--------------CCceeEEEEEecCCCEEEEEEecCC-----
Confidence            8433  4454 478889999999998766532  11              24567776542 343 234443221     


Q ss_pred             ccccHHHHhh-cCc--ceeccCcccceeeeeCHHHHHHHHhc
Q 017849          188 TRIRKSILRA-VGQ--MDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       188 ~~i~~~~l~~-~~~--~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                          ...... .+.  -....+..++++|+|+.++|...+.+
T Consensus       315 ----~~~~~~~~~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~~  352 (486)
T 2yqc_A          315 ----QELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMIPK  352 (486)
T ss_dssp             ----HHHHHCEETTEEEEESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred             ----HHHhhcccccccccccccceeEEEEEEeHHHHHHHHHh
Confidence                111111 010  12234688999999999999874443

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=99.21  E-value=7.1e-10  Score=104.71  Aligned_cols=192  Identities=9%  Similarity=0.125  Sum_probs=122.5

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceecee---CCcchHHHHHHHHHh-------------CCCCeEEEEecCcchHHHH
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLEL-------------SNIKDLIVVVEGADAALRV   65 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv---~gkplI~~~L~~l~~-------------~gi~~v~vv~~~~~~~~~i   65 (365)
                      ++.+|+||||.||||    +...||+++||   .|||++++.++.+.+             .++.-+ |.++... .+.+
T Consensus        35 kvavvlLAGG~GTRL----G~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~-IMtS~~t-~e~t  108 (405)
T 3oc9_A           35 KTALITPAGGQGSRL----GFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWF-LMTNEET-IEEI  108 (405)
T ss_dssp             CEEEEEECCSBCTTT----TCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEE-EEECTTT-HHHH
T ss_pred             ceEEEEecCCCcccc----cCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEE-EEeCCcc-HHHH
Confidence            457899999999999    77899999999   899999999988853             467644 4444333 3578


Q ss_pred             HHHHHh--hhc-CCcceEEEEc---------------------CCCCChHHHHHHHH-----HHcC---CCcEEEEeCCc
Q 017849           66 GGWISA--AYV-DRLHVEVATV---------------------PEDVGTAGALRAIA-----HHLT---AKDVLVVSGDL  113 (365)
Q Consensus        66 ~~~~~~--~~~-~~~~v~i~~~---------------------~~~~gt~~al~~~~-----~~i~---~~~~lv~~~D~  113 (365)
                      .+++++  ++. +.-.+.+..|                     ..+.|+|+.+....     +.+.   .+++++.+.|.
T Consensus       109 ~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN  188 (405)
T 3oc9_A          109 NNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDN  188 (405)
T ss_dssp             HHHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTB
T ss_pred             HHHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCC
Confidence            888875  222 1112333221                     12478887666432     2221   25788888897


Q ss_pred             -ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccH
Q 017849          114 -VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRK  192 (365)
Q Consensus       114 -i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~  192 (365)
                       +.....-.++..|.++++++++-+.+...  |              .+..|++......-.++.+.+.+.. ...    
T Consensus       189 ~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~--~--------------dek~Gvl~~~dg~~~vvEysei~~e-~e~----  247 (405)
T 3oc9_A          189 ILCKDVDPNMIGYMDLLQSEICIKIVKKGF--K--------------EEKVGVLVKEQERIKVVEYTELTDE-LNK----  247 (405)
T ss_dssp             TTCCSSCHHHHHHHHHTTCSEEEEEEECCS--T--------------TCSCCEEEEETTEEEEECGGGCCTT-TTC----
T ss_pred             cccccCCHHHHHHHHHcCCCEEEEEEECCC--C--------------CCccceEEEECCeeEEEEEeeCCHH-Hhh----
Confidence             77777778999999999999987765431  1              2456777643221223444432211 000    


Q ss_pred             HHHhhcCcceeccCcccceeeeeCHHHHHHHH
Q 017849          193 SILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (365)
Q Consensus       193 ~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~  224 (365)
                          +.+.-....+..+.++|+|+.++|..+.
T Consensus       248 ----~~~~g~l~fn~~Ni~~h~fs~~fL~~i~  275 (405)
T 3oc9_A          248 ----QLSNGEFIYNCGHISINGYSTSFLEKAA  275 (405)
T ss_dssp             ----BCTTSCBSSCEEEEEEEEEEHHHHHHHT
T ss_pred             ----cCCCCceeeccceeEeeecCHHHHHHhh
Confidence                0011122345678899999999998775

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=97.73  E-value=4e-05  Score=66.34  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=73.8

Q ss_pred             ceEEEEc--CCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeE-EEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            3 FQVVVLA--GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDL-IVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         3 ~~avIlA--~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v-~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |.+||++  |...|||.|.    .........++|||+|+++.+..++++.+ +++++...    +.    .+    .++
T Consensus         4 ~~~vip~k~g~~KtRL~~~----l~~~~~~~l~~~ll~~vl~~l~~~~~~~v~vvv~~~~~----~~----~~----~~~   67 (211)
T 2i5e_A            4 MRAVIPYKKAGAKSRLSPV----LSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYG----LE----EM----TEA   67 (211)
T ss_dssp             CEEEEECCCTTTTGGGTTT----SCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTT----CS----SC----CSS
T ss_pred             eEEEEEeCCCCCccccCcc----CCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcCcHH----HH----hh----cCC
Confidence            6789999  7677888432    22333335679999999999999999888 88877431    11    11    256


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHH
Q 017849           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTA  124 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~  124 (365)
                      .++.++  .|.+++++.+.+.+ .+.++++.||+  +....+..+++
T Consensus        68 ~~v~~~--~gl~~sl~~a~~~~-~~~vlvi~~D~P~l~~~~i~~l~~  111 (211)
T 2i5e_A           68 RVLLDE--KDLNEALNRYLKEA-EEPVLIVMADLPLLSPEHIKEISS  111 (211)
T ss_dssp             EEEECC--SCHHHHHHHHHHHC-CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred             EEEECC--CCHHHHHHHHHHhc-CCCEEEEcCCcCCCCHHHHHHHHc
Confidence            666654  88899999998776 57899999994  55556666665

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=97.49  E-value=0.003  Score=61.29  Aligned_cols=192  Identities=13%  Similarity=0.098  Sum_probs=107.2

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHhC----CC-CeEEEEecCcchHHHHHHHHHhhhcC
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NI-KDLIVVVEGADAALRVGGWISAAYVD   75 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~~----gi-~~v~vv~~~~~~~~~i~~~~~~~~~~   75 (365)
                      ++.+|+||||.||||    +...||.++|+. |+++++..++.+...    |. -..+|.++... .+...+++++...-
T Consensus       127 kvavvlLaGGlGTRL----G~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T-~~~T~~~f~k~~~f  201 (528)
T 3r3i_A          127 KLVVVKLNGGLGTSM----GCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNT-DEDTKKILQKYNHC  201 (528)
T ss_dssp             TEEEEEECCCBCTTT----TCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-HHHHHSSCGGGTTS
T ss_pred             ceEEEEeCCCCcccc----CCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccch-hHHHHHHHHhcCcc
Confidence            356789999999999    778999999996 889999999998664    42 24566666543 34677777652110


Q ss_pred             CcceEEEEc----------------------C-----CCCChHH---HHHHH--HHHcC---CCcEEEEeCCccc-CCCh
Q 017849           76 RLHVEVATV----------------------P-----EDVGTAG---ALRAI--AHHLT---AKDVLVVSGDLVS-DVPP  119 (365)
Q Consensus        76 ~~~v~i~~~----------------------~-----~~~gt~~---al~~~--~~~i~---~~~~lv~~~D~i~-~~~l  119 (365)
                      +..+.+..|                      +     .+.|.|+   +|...  ++.+.   .+++.+.+.|.+. ..|.
T Consensus       202 g~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp  281 (528)
T 3r3i_A          202 RVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDL  281 (528)
T ss_dssp             SCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCH
T ss_pred             CCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCH
Confidence            112222211                      0     1234443   33221  23222   3678888889543 3454


Q ss_pred             HHHHHHHHhc----CCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCc-EEEEeeccccccccccccHHH
Q 017849          120 GAVTAAHRRH----DAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSI  194 (365)
Q Consensus       120 ~~~l~~h~~~----~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~-~l~~~~~~~~~ek~~~i~~~~  194 (365)
                      . ++..+..+    ++++.+-+.+..  .|              .+.-|++... +|+ .++.+.+-+         ...
T Consensus       282 ~-~Lg~~~~~~~~~~~d~~~kVv~Kt--~~--------------dek~Gvl~~~-dGk~~vvEyseip---------~e~  334 (528)
T 3r3i_A          282 Y-ILNHLMNPPNGKRCEFVMEVTNKT--RA--------------DVKGGTLTQY-EGKLRLVEIAQVP---------KAH  334 (528)
T ss_dssp             H-HHHHHSSCSSSCCCSEEEEECCCC--TT--------------CCSSCEEECS-SSSCEEECTTSSC---------GGG
T ss_pred             H-HHHHHHhcccccCCcEEEEEeEcc--cc--------------CCcccEEEEE-CCeEEEEEecCCC---------hhH
Confidence            3 56666665    777766443321  11              1222444332 333 233333211         111


Q ss_pred             HhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          195 LRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       195 l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                      ...... .....+.|+...+|+-+.|..+++.
T Consensus       335 ~~~~~g-~~~f~~~Ntnnlw~~L~~L~~v~~~  365 (528)
T 3r3i_A          335 VDEFKS-VSKFKIFNTNNLWISLAAVKRLQEQ  365 (528)
T ss_dssp             TTTSSC-SSSCCCCEEEEEEEEHHHHHHHHHT
T ss_pred             hhccCC-cccCCeEEEEEEEEEHHHHHHHHHh
Confidence            111111 1234567888999999999888765

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=96.89  E-value=0.057  Score=51.93  Aligned_cols=132  Identities=14%  Similarity=0.137  Sum_probs=83.5

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceecee-CCcchHHHHHHHHHhC----CC-CeEEEEecCcchHHHHHHHHHh--hhc
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLELS----NI-KDLIVVVEGADAALRVGGWISA--AYV   74 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv-~gkplI~~~L~~l~~~----gi-~~v~vv~~~~~~~~~i~~~~~~--~~~   74 (365)
                      +.+|+||||.||||    ....||.++|+ .|+++++..++++...    |+ -..+|.++... .+...+++++  ++.
T Consensus        77 vavvlLaGGlGTRL----G~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T-~~~T~~~~~k~~~Fg  151 (484)
T 3gue_A           77 AVVLKLNGGLGTGM----GLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFST-SGETKNFLRKYPTLY  151 (484)
T ss_dssp             EEEEEEECCCCGGG----TCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-HHHHHHHGGGCHHHH
T ss_pred             cEEEEEcCCccccc----CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcch-hHHHHHHHHhCcccC
Confidence            45788999999999    77899999999 6789999999888652    32 24667776554 3577777764  221


Q ss_pred             -CCcceEEEE-----------------cC------CCCChHHHHHHH-----HHHcC---CCcEEEEeCCcccC-CChHH
Q 017849           75 -DRLHVEVAT-----------------VP------EDVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSD-VPPGA  121 (365)
Q Consensus        75 -~~~~v~i~~-----------------~~------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~-~~l~~  121 (365)
                       ..-.+.+..                 ..      .+.|.|+.....     ++.+.   .+++.+.+.|.+.. .|. .
T Consensus       152 l~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp-~  230 (484)
T 3gue_A          152 EVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDV-R  230 (484)
T ss_dssp             TTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCH-H
T ss_pred             CCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCH-H
Confidence             110111111                 00      134555433222     22222   36788888896444 343 4


Q ss_pred             HHHHHHhcCCeEEEEEeee
Q 017849          122 VTAAHRRHDAVVTAMICSV  140 (365)
Q Consensus       122 ~l~~h~~~~a~~t~l~~~~  140 (365)
                      ++..+..+++++.+-+.+.
T Consensus       231 ~lG~~~~~~~d~~~kvv~K  249 (484)
T 3gue_A          231 LLDYMHEKQLGFLMEVCRR  249 (484)
T ss_dssp             HHHHHHHTTCSEEEEEEEC
T ss_pred             HHHHHHhcCCCEEEEEEEC
Confidence            7788888899988766553

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=96.16  E-value=6.4e-05  Score=71.02  Aligned_cols=74  Identities=12%  Similarity=0.048  Sum_probs=41.7

Q ss_pred             EEEEeCCcccCC--ChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCC-cEEEEeeccc
Q 017849          106 VLVVSGDLVSDV--PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTK-QFLLHIATGA  182 (365)
Q Consensus       106 ~lv~~~D~i~~~--~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~-~~l~~~~~~~  182 (365)
                      =|+-.+|.++.+  ++.++++.|.     +|+..  .+                 ++..+++..+++.+ ..+ .|.+  
T Consensus        13 ~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g--~~-----------------~~~~~Gv~~ld~a~~g~I-~F~e--   65 (374)
T 2iu8_A           13 GLVPRGSHMSQSTYSLEQLADFLK-----VEFQG--NG-----------------ATLLSGVEEIEEAKTAHI-TFLD--   65 (374)
T ss_dssp             --------CCSCCEEHHHHHHHTT-----CEEES--CT-----------------TCEECEECCTTTCCTTEE-EECC--
T ss_pred             CcccCccccccCcCcHHHHHHhhC-----CEEEC--CC-----------------cceEEEEeccccCCCCeE-EEEe--
Confidence            466778999987  8999999885     24432  11                 24567888887532 344 5543  


Q ss_pred             cccccccccHHHHhhcCcceeccCcccceeeeeCHHHHH
Q 017849          183 ELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQ  221 (365)
Q Consensus       183 ~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~  221 (365)
                         |+...            ....+.++|+|+|+++++.
T Consensus        66 ---kPk~~------------~~~~~~~aGiyI~~~~~l~   89 (374)
T 2iu8_A           66 ---NEKYA------------KHLKSSEAGAIIISRTQFQ   89 (374)
T ss_dssp             ---SSSTH------------HHHHTCCCSEEEEEHHHHH
T ss_pred             ---Cchhh------------hhhhcCCcEEEEeChhHhh
Confidence               32110            1125779999999999774

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*

Probab=96.11  E-value=0.005  Score=60.86  Aligned_cols=131  Identities=15%  Similarity=0.161  Sum_probs=83.5

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeC---CcchHHHHHHHHHhC-CC-CeEEEEecCcchHHHHHHHHHhhhcCCc
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS-NI-KDLIVVVEGADAALRVGGWISAAYVDRL   77 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~---gkplI~~~L~~l~~~-gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~   77 (365)
                      +..|+||||.||||    ....||.++|++   |++++++.++++.+. |. -..+|.++... .+...++++.+-.++.
T Consensus       115 vavvllaGGlGTRL----G~~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T-~~~T~~~~~~fgl~~~  189 (630)
T 3ogz_A          115 TVFVLVAGGLGERL----GYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDT-HDRTLQLLRELQLEVP  189 (630)
T ss_dssp             EEEEEECCCEEGGG----TEEEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTT-HHHHHHHHHHTTCCCT
T ss_pred             ceEEEecCCccccc----CCCCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccc-hHHHHHHHHHhCCCcc
Confidence            45789999999999    788999999997   899999999999643 43 24566666544 3577888876322222


Q ss_pred             ceEEEEc----------------C------CCCChHHHHHH-----------------------HHHHc---CCCcEEEE
Q 017849           78 HVEVATV----------------P------EDVGTAGALRA-----------------------IAHHL---TAKDVLVV  109 (365)
Q Consensus        78 ~v~i~~~----------------~------~~~gt~~al~~-----------------------~~~~i---~~~~~lv~  109 (365)
                      .+.+..|                +      .+.|.|+....                       .++.+   ..+++.+.
T Consensus       190 ~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~  269 (630)
T 3ogz_A          190 NLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFI  269 (630)
T ss_dssp             TEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEE
Confidence            3333211                0      02455543322                       22222   13577888


Q ss_pred             eCCccc--CCChHHHHHHHHhcCCeEEEEEee
Q 017849          110 SGDLVS--DVPPGAVTAAHRRHDAVVTAMICS  139 (365)
Q Consensus       110 ~~D~i~--~~~l~~~l~~h~~~~a~~t~l~~~  139 (365)
                      +.|.+.  ..|. .++..+..+++++.+-+.+
T Consensus       270 ~vDN~L~~~~DP-~~lG~~~~~~~d~~~kvv~  300 (630)
T 3ogz_A          270 QDTNAGATITIP-ISLALSAEHSLDMNFTCIP  300 (630)
T ss_dssp             CTTBTTHHHHHH-HHHHHHHHTTCSEEEEEEC
T ss_pred             ccCCccccccCH-HHhHHHHhcCCCEEEEEEE
Confidence            888633  2333 3677788889998776554

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=92.43  E-value=0.97  Score=38.50  Aligned_cols=105  Identities=11%  Similarity=0.076  Sum_probs=66.1

Q ss_pred             eceeCCc-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCCC
Q 017849           28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~~  104 (365)
                      .+|.-|+ ..|..+|+.+.+....  +|+|+-+...  +...+.++.+......+.++. ....|.+.+.-.+++....+
T Consensus        10 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~--d~t~~~~~~~~~~~~~i~~i~-~~n~G~~~a~N~g~~~a~g~   86 (240)
T 3bcv_A           10 IVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESP--DNCPKICDDYAAQYPNIKVIH-KKNAGLGMACNSGLDVATGE   86 (240)
T ss_dssp             EEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCS--SSHHHHHHHHHHHCSSEEEEE-CCCCCHHHHHHHHHHHCCSS
T ss_pred             EEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCC--cCHHHHHHHHHhhCCCEEEEE-CCCCChHHHHHHHHHHcCCC
Confidence            4555555 7899999999876543  5666644221  112222322211112466664 45688888888888888778


Q ss_pred             cEEEEeCCcccCCC-hHHHHHHHHhcCCeEEE
Q 017849          105 DVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTA  135 (365)
Q Consensus       105 ~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~  135 (365)
                      .++++.+|.+...+ +..+++...+.+.++.+
T Consensus        87 ~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~  118 (240)
T 3bcv_A           87 YVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVF  118 (240)
T ss_dssp             EEEECCTTCCCCTTHHHHHHHHHHHHTCSEEE
T ss_pred             EEEEECCCCcCCHHHHHHHHHHHHhcCCCEEE
Confidence            89999999665544 78888887765666543

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=92.37  E-value=1.7  Score=37.43  Aligned_cols=99  Identities=8%  Similarity=0.042  Sum_probs=66.4

Q ss_pred             eceeCCc-chHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcC--------CCCChHHHHHH
Q 017849           28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP--------EDVGTAGALRA   96 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~--------~~~gt~~al~~   96 (365)
                      .+|.-|+ ..|..+|+.+.+....  +|+|+-+...  +...+.+..+.. ...+.++..+        ...|.+.+.-.
T Consensus         6 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~--d~t~~~~~~~~~-~~~i~~i~~~~~~~~~~~~n~G~~~a~N~   82 (255)
T 1qg8_A            6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSN--EETLNVIRPFLN-DNRVRFYQSDISGVKERTEKTRYAALINQ   82 (255)
T ss_dssp             EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCC--HHHHHHHGGGGG-STTEEEEECCCCSHHHHHSSCHHHHHHHH
T ss_pred             EEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCC--chHHHHHHHHhh-cCCEEEEecccccccccccccCHHHHHHH
Confidence            3555554 7899999999876543  5666654332  344455554322 3457777666        56788888888


Q ss_pred             HHHHcCCCcEEEEeCCcccCC-ChHHHHHHHHhc
Q 017849           97 IAHHLTAKDVLVVSGDLVSDV-PPGAVTAAHRRH  129 (365)
Q Consensus        97 ~~~~i~~~~~lv~~~D~i~~~-~l~~~l~~h~~~  129 (365)
                      +++....+.++++.+|.+... -+..+++.+.+.
T Consensus        83 gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~  116 (255)
T 1qg8_A           83 AIEMAEGEYITYATDDNIYMPDRLLKMVRELDTH  116 (255)
T ss_dssp             HHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred             HHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhC
Confidence            888877788999999965544 478888877654

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=90.49  E-value=0.85  Score=39.76  Aligned_cols=87  Identities=13%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             cchHHHHHHHHHhCCCCeEEEEecCcchHHHH--HHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHc---CCCcEEE
Q 017849           34 RPVLSYVLEQLELSNIKDLIVVVEGADAALRV--GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---TAKDVLV  108 (365)
Q Consensus        34 kplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i--~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i---~~~~~lv  108 (365)
                      ++|+.++++.+..++...++++++.... ..+  ..+..      .++.+..+ ...|.+.+|+.+...+   ..+.+++
T Consensus        37 ~~ll~~tl~~~~~~~~~~vvvvt~~~~~-~~~~~~~~~~------~~~~~~~q-~~~gLg~rl~~a~~~~~~~~~~~vli  108 (242)
T 3cgx_A           37 RHFVQDMLQGLARLHADLHICYVPGDAD-LPEKFKAWLG------PQHMFAAQ-QGLDLGERMKHAMQKAFDDGYDRVVL  108 (242)
T ss_dssp             HHHHHHHHHHHTTSSSEEEEEECCCCTT-HHHHHHHHHC------TTSEEEEC-CSSSHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCCchh-hhhhhhhhcc------CCcEEecC-CCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            6899999999999988767666654321 111  23321      13434333 4578889999887654   2356999


Q ss_pred             EeCC--cccCCChHHHHHHHHh
Q 017849          109 VSGD--LVSDVPPGAVTAAHRR  128 (365)
Q Consensus       109 ~~~D--~i~~~~l~~~l~~h~~  128 (365)
                      +.+|  .+...++..+++....
T Consensus       109 igaD~P~L~~~~l~~a~~~l~~  130 (242)
T 3cgx_A          109 MGSDIPDYPCELVQKALNDLQH  130 (242)
T ss_dssp             ECSSCTTCCHHHHHHHHHHTTT
T ss_pred             EcCCCCCCCHHHHHHHHHHhcc
Confidence            9999  4777778888876543

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=90.08  E-value=0.091  Score=45.86  Aligned_cols=31  Identities=19%  Similarity=0.149  Sum_probs=22.0

Q ss_pred             eEEEEEEecCCce-EEEeCCHHHHHHHhHHHhhh
Q 017849          300 HKCCVYIASNSKY-CVRLNSIQAFMDINRDVIGE  332 (365)
Q Consensus       300 ~~~~~~~~~~~~y-~~ri~~~~~Y~~~n~~~l~~  332 (365)
                      .++++|..  .+| .....++..|+++|+.+|..
T Consensus        39 ~~~~~~~~--~~~~~g~w~di~~~l~~n~~~l~~   70 (240)
T 3r8y_A           39 VQAFVNKK--SGVLFGEWSEIKTILDENSKYIVD   70 (240)
T ss_dssp             SEEEECSS--EEEEEEEHHHHHHHHHHTTTTEEE
T ss_pred             ceEEEcCC--CeEEEccHHHHHHHHHhccceech
Confidence            56666644  566 55567777899999998853

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=87.86  E-value=5.3  Score=38.06  Aligned_cols=103  Identities=10%  Similarity=0.086  Sum_probs=68.5

Q ss_pred             eceeCCc--chHHHHHHHHHhCCC----CeEEEEecCcc---hHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHH
Q 017849           28 LLPVANR--PVLSYVLEQLELSNI----KDLIVVVEGAD---AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIA   98 (365)
Q Consensus        28 llpv~gk--plI~~~L~~l~~~gi----~~v~vv~~~~~---~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~   98 (365)
                      .+|.-|.  ..|..+|+.+.+...    .+|+||-+...   ..+.+.++....   ...+.++..+...|-+.|...++
T Consensus        34 IIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~---~~~v~vi~~~~n~G~~~a~N~g~  110 (472)
T 1xhb_A           34 VIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKL---KVPVHVIRMEQRSGLIRARLKGA  110 (472)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSS---SSCEEEEECSSCCCHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHC---CCcEEEEECCCCCChHHHHHHHH
Confidence            3566665  589999999977653    26777754321   112233333211   11477777777789999988888


Q ss_pred             HHcCCCcEEEEeCCcccC-CChHHHHHHHHhcCCeE
Q 017849           99 HHLTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDAVV  133 (365)
Q Consensus        99 ~~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a~~  133 (365)
                      +....+.++++.+|.+.. .-+..+++.+.+....+
T Consensus       111 ~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~  146 (472)
T 1xhb_A          111 AVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTV  146 (472)
T ss_dssp             HHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred             HhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEE
Confidence            888778899999996554 55888988887655444

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=83.85  E-value=6.2  Score=38.82  Aligned_cols=102  Identities=10%  Similarity=0.009  Sum_probs=65.6

Q ss_pred             ceeCCc--chHHHHHHHHHhCCC-C---eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcC
Q 017849           29 LPVANR--PVLSYVLEQLELSNI-K---DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (365)
Q Consensus        29 lpv~gk--plI~~~L~~l~~~gi-~---~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~  102 (365)
                      +|+-|.  ..|..+|+.+.+... .   +|+||-+.... ..+.+.++.+......+.++..+...|-+.|...+++...
T Consensus       118 Ip~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D-~tl~~~l~~~~~~~~~v~vi~~~~n~G~~~A~N~G~~~A~  196 (570)
T 2d7i_A          118 IPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR-EHLKKPLEDYMALFPSVRILRTKKREGLIRTRMLGASVAT  196 (570)
T ss_dssp             EEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCC-GGGTHHHHHHHTTSTTEEEEECSSCCCHHHHHHHHHHHCC
T ss_pred             EEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCc-HHHHHHHHHHHHhCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            566675  488889988866543 2   67777543211 1112223222111125777776777899999888888877


Q ss_pred             CCcEEEEeCCcccC-CChHHHHHHHHhcCC
Q 017849          103 AKDVLVVSGDLVSD-VPPGAVTAAHRRHDA  131 (365)
Q Consensus       103 ~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a  131 (365)
                      .+.++++.+|.+.. .-+..+++...+...
T Consensus       197 gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~  226 (570)
T 2d7i_A          197 GDVITFLDSHCEANVNWLPPLLDRIARNRK  226 (570)
T ss_dssp             SSEEEECCSSEEECTTCSHHHHHHHHHCTT
T ss_pred             CCEEEEEcCCccccccHHHHHHHHHHhCCC
Confidence            77889999996554 458888888776543

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=82.41  E-value=8.8  Score=36.88  Aligned_cols=101  Identities=12%  Similarity=0.031  Sum_probs=67.6

Q ss_pred             eceeCCc-c-hHHHHHHHHHhCCCC----eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHc
Q 017849           28 LLPVANR-P-VLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL  101 (365)
Q Consensus        28 llpv~gk-p-lI~~~L~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i  101 (365)
                      .+|.-|. . .|..+|+.+.+.-..    +|+||-+.... ..+...+..    ...+.++..+...|.+.|+..+++..
T Consensus        71 IIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D-~t~~~~~~~----~~~v~vi~~~~n~G~~~A~N~G~~~A  145 (501)
T 2ffu_A           71 VITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSND-PEDGALLGK----IEKVRVLRNDRREGLMRSRVRGADAA  145 (501)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSC-THHHHGGGG----BTTEEEEECSSCCHHHHHHHHHHHHC
T ss_pred             EEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCc-hHHHHHHhc----CCCEEEEECCCCcCHHHHHHHHHHhc
Confidence            4666676 4 899999998665332    77777543221 233333322    12577776666788888988888888


Q ss_pred             CCCcEEEEeCCccc-CCChHHHHHHHHhcCCeE
Q 017849          102 TAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVV  133 (365)
Q Consensus       102 ~~~~~lv~~~D~i~-~~~l~~~l~~h~~~~a~~  133 (365)
                      ..+.++++.+|... +.-+..+++...+....+
T Consensus       146 ~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~v  178 (501)
T 2ffu_A          146 QAKVLTFLDSHCECNEHWLEPLLERVAEDRTRV  178 (501)
T ss_dssp             CSSEEEECCSSEEECTTCHHHHHHHHHHCTTEE
T ss_pred             CCCEEEEECCCcccCccHHHHHHHHHHhCCCeE
Confidence            77778899999654 455899998887765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1mc3a_	291	c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}	1e-15
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	1e-14
d1yp2a2	307	c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr	2e-13
d1fxoa_	292	c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa	3e-13
d1tzfa_	259	c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf	4e-12
d1jyka_	229	c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer	7e-10
d2dpwa1	231	c.68.1.19 (A:1-231) Uncharacterized protein TTHA01	2e-08
d2oi6a2	248	c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate	3e-08
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	7e-08
d1i52a_	225	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	1e-06
d1vpaa_	221	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	4e-06
d1w55a1	205	c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,	1e-05
d1vgwa_	226	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	2e-05
d1w77a1	226	c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-	4e-05
d2cu2a2	268	c.68.1.20 (A:1-268) Putative mannose-1-phosphate g	9e-05
d1e5ka_	188	c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro	0.003
d1vh1a_	246	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	0.004
d1vica_	255	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	0.004

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

 Score = 74.0 bits (182), Expect = 1e-15
 Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + ++LAGG+  +L P+ ++ V K LLP+ ++P++ Y L  L L+ I++++++    D   
Sbjct: 3   KGIILAGGSGTRLHPI-TRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61

Query: 64  --RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV-SGDLVSDVPPG 120
             R+ G  S      + +E A  P   G A A       L  +   +V   ++       
Sbjct: 62  FQRLLGDGSE---FGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFS 118

Query: 121 AVTAAHRRHDAVVTAMICSVPVS 143
                         A +    V 
Sbjct: 119 PKLRHVAARTE--GATVFGYQVM 139

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 71.5 bits (175), Expect = 1e-14
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + +VLAGG+  +L P+ ++ V K LLP+ ++P++ Y L  L L+ I+D++++    D  L
Sbjct: 5   KGIVLAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63

Query: 64  --RVGGWISAAYVDRLHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGD 112
              + G  S     +  V  +   ++   G A A       +    V +V GD
Sbjct: 64  YRDLLGDGS-----QFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKVALVLGD 111

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 67.7 bits (164), Expect = 2e-13
 Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 35/261 (13%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           ++L GG   +L PL +K+  K  +P+  N  ++   +     SNI  + V+ +   A+L 
Sbjct: 15  IILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 73

Query: 65  VGGWISAA----------YVDRLHVEVATVPEDV--GTAGALRAIAHHLTA---KDVLVV 109
                + A          +V+ L  + +    D   GTA A+R            + L++
Sbjct: 74  RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLIL 133

Query: 110 SGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD 169
           +GD +  +       AHR  DA +T     +                 K+   + ++ +D
Sbjct: 134 AGDHLYRMDYEKFIQAHRETDADITVAALPMDE---------------KRATAFGLMKID 178

Query: 170 PTKQFLLHI--ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL-DQ 226
              + +       G +L+        +     +      +    +Y  ++ V+  +L D+
Sbjct: 179 EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDK 238

Query: 227 KDKFQSLKQDVLPYLVRSQLK 247
                    +V+P      ++
Sbjct: 239 FPGANDFGSEVIPGATSLGMR 259

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 67.1 bits (164), Expect = 3e-13
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 28/172 (16%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + ++LAGG+  +L P  +  + K LLPV ++P++ Y L  L L+ I++++++    D   
Sbjct: 3   KGIILAGGSGTRLHPA-TLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61

Query: 64  --RVGGWISAAYVDRLHVEVATVPEDV--GTAGALRAIAHHLTAKD-VLVVSGDLVSDVP 118
             ++ G  S        +++    +    G A A       +      LV+  +L     
Sbjct: 62  FQQLLGDGS-----NWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHD 116

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP 170
              +  +  +     +  + +  V                 P RY ++  D 
Sbjct: 117 FHELLGSASQRQTGAS--VFAYHV---------------LDPERYGVVEFDQ 151

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

 Score = 63.2 bits (152), Expect = 4e-12
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKD 51
          M  + V+LAGG   +L    +   PK ++ +  +P+L ++++   +  IKD
Sbjct: 1  MASKAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKD 50

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 56.6 bits (135), Expect = 7e-10
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIK 50
          +  + ++LA G   +L PL ++  PKAL+ V  +P++ Y +E L+   I 
Sbjct: 2  IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGIN 50

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 36/231 (15%), Positives = 67/231 (29%), Gaps = 25/231 (10%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M    +VLAGG              KAL+P   RP++ +VLE L  + +  + V      
Sbjct: 1   MRPSAIVLAGGKEAWAERF--GVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGL 58

Query: 61  AALRVGGWIS--------AAYVDRLHVEVATVPEDVG--TAGALRAIAHHLTAKD--VLV 108
                                ++ +   V     D+   T  A+R +            +
Sbjct: 59  VPAPALTLPDRGGLLENLEQALEHVEGRVLVATGDIPHLTEEAVRFVLDKAPEAALVYPI 118

Query: 109 VSGDLVSDVPPGAVTAAHRRHDAVVTA----MICSVPVSGLSEAGSSGAKDKTKKPGRYN 164
           V  + V    P       R  +   T     ++                  + +      
Sbjct: 119 VPKEAVEARFPRTKRTYARLREGTFTGGNLLLLDKSLFRKALPLARRVVALRKRPLALAR 178

Query: 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215
           ++G D   + LL   + AE+E          + +  ++ RA +        
Sbjct: 179 LVGWDVLLKLLLGRLSLAEVEAR-------AQRILGVEARALVTPYPEVGV 222

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
            VV+LA G   ++      ++PK L  +A + ++ +V++         + +V        
Sbjct: 4   SVVILAAGKGTRMYS----DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVY------- 52

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVT 123
             GG +    +   ++      E +GT  A++  A      + +++    V  +    + 
Sbjct: 53  GHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQ 112

Query: 124 AAHRRHDAVVTAMIC 138
                       ++ 
Sbjct: 113 RLRDAKPQGGIGLLT 127

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 50.5 bits (119), Expect = 7e-08
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIV 54
          ++LA G   ++      ++PK L  VA   +L +V   +     +  + 
Sbjct: 5  IILAAGKGTRMKS----DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVT 49

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          +D   VV A G  +++      E PK  L + N+ +L + +  L        +V+ 
Sbjct: 2  LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIA 53

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LA G  +++    S+ VPK  L +  R +  Y L     S   D +V+V
Sbjct: 7  ILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIV 53

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 2  DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLE 45
          +  +++LA G S +     + +V K  L + N P+  Y  + L 
Sbjct: 1  EMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLS 40

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++ A G   +       + PK  + + ++ VL +VL   E     DL VVV
Sbjct: 7  LIPAAGIGVRF----GADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVV 53

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIV 54
          V++LAGG  K++       +PK  +P+  +P+  Y             IV
Sbjct: 7  VILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIV 52

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

 Score = 41.2 bits (95), Expect = 9e-05
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQL 44
          M    +V+AGG  ++L PL  ++ PK  LP+   + +L   LE+L
Sbjct: 1  MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERL 45

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQ 43
          VVLAGG ++++       V K LL +  +P+  +V + 
Sbjct: 7  VVLAGGKARRM-----GGVDKGLLELNGKPLWQHVADA 39

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 21 SKEVP-KALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          S  +P K L+ +  +P++ +VLE+   S  + +IV  
Sbjct: 12 STRLPGKPLVDINGKPMIVHVLERARESGAERIIVAT 48

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 3  FQVVVLAGGTSKKLVPLVSKEVP-KALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          F V++ A   S +L        P K L  +  +P++ +V E+   S    +I+ 
Sbjct: 2  FTVIIPARFASSRL--------PGKPLADIKGKPMIQHVFEKALQSGASRVIIA 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	100.0
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	100.0
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	100.0
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.97
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.95
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.94
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.92
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.87
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.81
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	99.59
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.55
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.52
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.46
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.43
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	99.39
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.34
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	99.31
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.24
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.24
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	99.08
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	99.04
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	98.62
d1jv1a_	501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	97.49
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	90.88
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	84.66
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	80.87

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.6e-35  Score=269.42  Aligned_cols=235  Identities=17%  Similarity=0.272  Sum_probs=183.0

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      +++|||||||.||||+|+ |..+||||+||+|+|||+|+|++|..+|+++|+|++++.. .+.+.++++....-...+.+
T Consensus         1 k~KavILAgG~GtRl~pl-T~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~-~~~i~~~~~~~~~~g~~I~y   78 (292)
T d1fxoa_           1 KRKGIILAGGSGTRLHPA-TLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQD-TPRFQQLLGDGSNWGLDLQY   78 (292)
T ss_dssp             CEEEEEECCCCCTTTTTH-HHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEE
T ss_pred             CcEEEEECCCCCCcCChh-hcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCC-HHHHHHHhccccccCeEEEE
Confidence            468999999999999999 9999999999999999999999999999999998887554 35677777653211345677


Q ss_pred             EEcCCCCChHHHHHHHHHHcCCCc-EEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCC
Q 017849           82 ATVPEDVGTAGALRAIAHHLTAKD-VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~-~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (365)
                      +.++++.||++|+..+.+++.+++ |+++++|++++.++..+++.|.++++.+|+++.+++                 +|
T Consensus        79 ~~q~~~~Gta~ai~~a~~~i~~~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~-----------------~p  141 (292)
T d1fxoa_          79 AVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVL-----------------DP  141 (292)
T ss_dssp             EECSSCCCGGGHHHHTHHHHTTSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS-----------------CG
T ss_pred             ccCCCCCcHHHHHHhhhhhcCCCceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECC-----------------CH
Confidence            788889999999999999998665 566777899999999999999999999999887653                 36


Q ss_pred             CcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcC-ccc--cccccch
Q 017849          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-DKF--QSLKQDV  237 (365)
Q Consensus       161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~-~~~--~s~~~d~  237 (365)
                      ++||++.+|+++++ ..+.     |||.             .+.|+++.+|+|+|+++++..+ ++- ++.  ...-.|+
T Consensus       142 ~~yGV~~~d~~~ki-~~~~-----EKP~-------------~p~Snla~~G~Y~f~~~~~~~~-~~l~~s~rgE~eitD~  201 (292)
T d1fxoa_         142 ERYGVVEFDQGGKA-ISLE-----EKPL-------------EPKSNYAVTGLYFYDQQVVDIA-RDLKPSPRGELEITDV  201 (292)
T ss_dssp             GGSEEEEECTTSCE-EEEE-----ESCS-------------SCSSSEEEEEEEEECTTHHHHH-HHCCCCTTSSCCHHHH
T ss_pred             HHCeEEEEcCCCCE-eEEE-----ECCC-------------CCCCCcEEEEEEEEChHHHHHH-HhCCCCCCCchhhHHH
Confidence            78999999998875 5666     4442             3467999999999999999644 432 211  1111255


Q ss_pred             hhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeC
Q 017849          238 LPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLN  317 (365)
Q Consensus       238 lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~  317 (365)
                      ++.+++++                                                       ++.++.+..+.+|..+.
T Consensus       202 ~~~~l~~~-------------------------------------------------------~~~~~~~~~~~~W~D~G  226 (292)
T d1fxoa_         202 NRAYLERG-------------------------------------------------------QLSVEIMGRGYAWLDTG  226 (292)
T ss_dssp             HHHHHHTT-------------------------------------------------------CEEEEECCTTSEEEECC
T ss_pred             HHHHHHcC-------------------------------------------------------CeEEEEeCCCCEEEeCC
Confidence            55544332                                                       12344444455799999


Q ss_pred             CHHHHHHHhHHHh
Q 017849          318 SIQAFMDINRDVI  330 (365)
Q Consensus       318 ~~~~Y~~~n~~~l  330 (365)
                      |+.+|.++|+.+.
T Consensus       227 t~~~l~~a~~~v~  239 (292)
T d1fxoa_         227 THDSLLEAGQFIA  239 (292)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998774

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9e-34  Score=257.28  Aligned_cols=185  Identities=19%  Similarity=0.319  Sum_probs=152.0

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      |+|||||||.||||+|+ |..+||||+||+|||||+|+|++|..+|+++|+|+++++.. ..+++++++...-...+.++
T Consensus         2 MkaiIlagG~GtRl~p~-t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~-~~~~~~~~~g~~~gi~I~y~   79 (291)
T d1mc3a_           2 MKGIILAGGSGTRLHPI-TRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDK-GYFQRLLGDGSEFGIQLEYA   79 (291)
T ss_dssp             CEEEEECCCCCGGGHHH-HTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTH-HHHHHHHTTSGGGTCEEEEE
T ss_pred             ccEEEECCcCccccchh-hcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCcccH-HHHHHHhCchHhhCcEEEEE
Confidence            68999999999999999 99999999999999999999999999999999999987642 35666665321112456777


Q ss_pred             EcCCCCChHHHHHHHHHHcCCCcEE-EEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCC
Q 017849           83 TVPEDVGTAGALRAIAHHLTAKDVL-VVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~l-v~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (365)
                      .++.+.|||+|+..+.+++.+++++ |+++|+++..++..+++.|.++.+++|+++.+++                 +|+
T Consensus        80 ~Q~~plGta~Ai~~a~~fi~~~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~-----------------dP~  142 (291)
T d1mc3a_          80 EQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM-----------------DPE  142 (291)
T ss_dssp             ECSSCCCSTHHHHHTHHHHTTSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS-----------------CCS
T ss_pred             ECCCCCchHHHHHHHHHHhCCCCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECC-----------------Ccc
Confidence            8888999999999999999876654 5555588899999999999998888999888764                 377


Q ss_pred             cceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                      +||++.+|+++++ ..+.|     ||.             .+.++++.+|+|+|+++++..+ ++
T Consensus       143 ~yGVve~d~~g~i-~~i~E-----KP~-------------~p~Sn~a~~GiY~f~~~v~~~~-~~  187 (291)
T d1mc3a_         143 RFGVVEFDDNFRA-ISLEE-----KPK-------------QPKSNWAVTGLYFYDSKVVEYA-KQ  187 (291)
T ss_dssp             SSBBCEEETTEEE-EECCB-----SCS-------------SCSCSEEEEEEEECCTHHHHHH-HS
T ss_pred             cCCCceeccCcce-eEEEE-----CCC-------------CCCCCeEEEEEEEeChHHHHHH-hc
Confidence            8999999988764 56764     442             2457999999999999999654 44

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=2e-33  Score=259.06  Aligned_cols=256  Identities=18%  Similarity=0.278  Sum_probs=185.3

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCc-chHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcC------
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD------   75 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gk-plI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~------   75 (365)
                      +.|||||||.||||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.  +.+.+|+.+.+..      
T Consensus        12 ~~AIILAaG~GtRL~pl-T~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~--~~i~~~l~~~~~~~l~~~~   88 (307)
T d1yp2a2          12 VLGIILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS--ASLNRHLSRAYASNMGGYK   88 (307)
T ss_dssp             EEEEEC------CCTTT-TTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCC--HHHHHHHHHHCC-------
T ss_pred             eEEEEECCCCcccCChh-hcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEecccc--ccchhhhhccccccccccc
Confidence            67999999999999999 99999999999886 99999999999999999999999874  4777777653321      


Q ss_pred             CcceEEEEc--------CCCCChHHHHHHHHHHcCC---CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCC
Q 017849           76 RLHVEVATV--------PEDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSG  144 (365)
Q Consensus        76 ~~~v~i~~~--------~~~~gt~~al~~~~~~i~~---~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~  144 (365)
                      ..++..+..        ....|++++++.+...+.+   ++|++++||++++.++..+++.|+.+++.+++++...+.. 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (307)
T d1yp2a2          89 NEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEK-  167 (307)
T ss_dssp             -CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHH-
T ss_pred             ccccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccc-
Confidence            112333321        1136999999999888763   5799999999999999999999999999988887665421 


Q ss_pred             CccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccc--cccHHHHhhc-CcceeccCcccceeeeeCHHHHH
Q 017849          145 LSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDT--RIRKSILRAV-GQMDIRADLMDAHMYAFNRSVLQ  221 (365)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~--~i~~~~l~~~-~~~~~~~~l~~~giyi~s~~vl~  221 (365)
                                    ....||++.+|+++++ ..+.++++.+...  ......+... ........+.++|+|+|++++|.
T Consensus       168 --------------~~~~~gvv~~d~~~~v-~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~  232 (307)
T d1yp2a2         168 --------------RATAFGLMKIDEEGRI-IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVML  232 (307)
T ss_dssp             --------------HHTTSEEEEECTTSBE-EEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHH
T ss_pred             --------------cccccceEEECCCCcE-EEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHH
Confidence                          1457899999988875 5666544322110  0000000000 00122346889999999999998


Q ss_pred             HHHhcC-ccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCcee
Q 017849          222 EVLDQK-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTH  300 (365)
Q Consensus       222 ~~~~~~-~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (365)
                      .++.+. ....++..|++|.++.++                                                      .
T Consensus       233 ~~~~~~~~~~~~~~~d~i~~li~~g------------------------------------------------------~  258 (307)
T d1yp2a2         233 NLLRDKFPGANDFGSEVIPGATSLG------------------------------------------------------M  258 (307)
T ss_dssp             HHHHTTCTTCCCTTTTHHHHHHHTT------------------------------------------------------C
T ss_pred             HHhhhccccccchHHHHHHHHHHCC------------------------------------------------------C
Confidence            776653 344567789999887663                                                      3


Q ss_pred             EEEEEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 017849          301 KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (365)
Q Consensus       301 ~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~~~  333 (365)
                      ++++|.+  +|||.+|+|+.+|++||+++|+..
T Consensus       259 ~v~~~~~--~g~W~Digt~~~~~~a~~~ll~~~  289 (307)
T d1yp2a2         259 RVQAYLY--DGYWEDIGTIEAFYNANLGITKKP  289 (307)
T ss_dssp             CEEEEEC--CSCCEECSSHHHHHHHHHGGGCSS
T ss_pred             cEEEEEe--CCeEEECcCHHHHHHHHHHHhcCC
Confidence            5688888  789999999999999999999864

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.97  E-value=1.9e-30  Score=237.89  Aligned_cols=237  Identities=14%  Similarity=0.247  Sum_probs=179.0

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      +|+|||||||.||||+|+ |..+||||+||+|+|||+|+++++..+|+++++|+++++.. +.+.+++.....-...+.+
T Consensus         3 ~MkavIlagG~GtRl~p~-t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~~-~~~~~~~~~~~~~~~~i~~   80 (295)
T d1lvwa_           3 HMKGIVLAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDL-PLYRDLLGDGSQFGVRFSY   80 (295)
T ss_dssp             SCEEEEECCCCCSTTTTT-TTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTH-HHHHHHHTTSGGGTSEEEE
T ss_pred             CcEEEEECCCCcccCCcc-cCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCcccH-HHHHHHhccchhcCCEEEE
Confidence            588999999999999999 99999999999999999999999999999999999987643 4666666542111235677


Q ss_pred             EEcCCCCChHHHHHHHHHHcCCCc-EEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCC
Q 017849           82 ATVPEDVGTAGALRAIAHHLTAKD-VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~-~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (365)
                      +.++.+.||++|+..+.+++.+++ ++++++|+++..++..++..|.+.+.++|+++....                 .+
T Consensus        81 v~e~~~~gta~Al~~a~~~l~~~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~-----------------~~  143 (295)
T d1lvwa_          81 RVQEEPRGIADAFIVGKDFIGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR-----------------DP  143 (295)
T ss_dssp             EECSSCCCGGGHHHHTHHHHTTSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS-----------------CC
T ss_pred             EECCCCCCHHHHHHHHHHHcCCCCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcC-----------------CC
Confidence            888889999999999999997654 566667788889999999999999999998876543                 26


Q ss_pred             CcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhcCccccccccchhhH
Q 017849          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY  240 (365)
Q Consensus       161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~~~~~~s~~~d~lp~  240 (365)
                      ..||++.++.++++ ..+.+     |+.             ...++++++|+|++++.+|..+ .+.. .....+..++.
T Consensus       144 ~~yG~i~~~~~~~v-~~~~E-----Kp~-------------~~~s~~~~~Giy~~n~~if~~~-~~~~-~~~~~e~~~~~  202 (295)
T d1lvwa_         144 RPFGVVEFDSEGRV-ISIEE-----KPS-------------RPKSNYVVPGLYFYDNQVVEIA-RRIE-PSDRGELEITS  202 (295)
T ss_dssp             TTSEEEEECTTSBE-EEEEE-----SCS-------------SCSCSEECCSEEEECTTHHHHH-HHCC-CCTTSCCCHHH
T ss_pred             ccccEEEECCCCcE-EEEee-----ccc-------------CcccceeecceEEECHHHHHHH-HhcC-CCcCCCeeccc
Confidence            68999999887764 56664     332             1235789999999999999644 4321 12233344444


Q ss_pred             HHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeEEEEEEecCCceEEEeCCHH
Q 017849          241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ  320 (365)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri~~~~  320 (365)
                      +...-...                                                 ...+++.+  ..+.+|..++|+.
T Consensus       203 ~~~~~~~~-------------------------------------------------~~~~~~~~--~~~~~w~Digt~~  231 (295)
T d1lvwa_         203 VNEEYLRM-------------------------------------------------GKLRVELM--GRGMAWLDTGTHD  231 (295)
T ss_dssp             HHHHHHHT-------------------------------------------------TCEEEEEE--CTTCEECCCSSHH
T ss_pred             hHHHHHHh-------------------------------------------------CCCeEEEc--CCCcEEeCCCChH
Confidence            44332211                                                 11334444  4477999999999


Q ss_pred             HHHHHhHHH
Q 017849          321 AFMDINRDV  329 (365)
Q Consensus       321 ~Y~~~n~~~  329 (365)
                      .|.+++.++
T Consensus       232 ~l~~~s~~i  240 (295)
T d1lvwa_         232 GLLEASSFI  240 (295)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999887

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=1.3e-26  Score=206.94  Aligned_cols=228  Identities=18%  Similarity=0.305  Sum_probs=164.8

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhc--C---
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--D---   75 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~--~---   75 (365)
                      |..+|||||||.||||+|+ |...||||+||+|+|||+|+|+.|.++|+++|+|++++.  .+.+.+++.+...  .   
T Consensus         1 ~~~kAiILAAG~GtRl~~l-T~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~--~~~i~~~~~~~~~~~~~i~   77 (259)
T d1tzfa_           1 MASKAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYK--GYVIKEYFANYFLHMSDVT   77 (259)
T ss_dssp             CCCEEEEEECSCC---------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTT--HHHHHHHHHTHHHHHSCEE
T ss_pred             CCceEEEECCCccccCChh-hCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchh--HHHHHHHHhcchhcccccc
Confidence            8899999999999999999 999999999999999999999999999999999999987  4588888754210  0   


Q ss_pred             ----------------CcceEEEEcCCCCChHHHHHHHHHHcC-CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEe
Q 017849           76 ----------------RLHVEVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMIC  138 (365)
Q Consensus        76 ----------------~~~v~i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~  138 (365)
                                      ...+.++.+....++.+++..+.+.+. ++.|+++.+|.+++.++..+++.|.......+....
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (259)
T d1tzfa_          78 FHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT  157 (259)
T ss_dssp             EEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred             chhccccchhhhccccccceeEEeccccccccchhhhhhhhccCCCceEEeccccccccchhhhhhhhcccccceeeccc
Confidence                            112445555667889999888877665 356999999999999999999999888887776543


Q ss_pred             eeccCCCccCCCCCCccCCCCCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHH
Q 017849          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS  218 (365)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~  218 (365)
                      ..                   ...++.+.... .+ +.....    .+               ...+.+..+|+|++++.
T Consensus       158 ~~-------------------~~~~~~~~~~~-~~-i~~~~~----~~---------------~~~~~~~~~G~y~~~~~  197 (259)
T d1tzfa_         158 FP-------------------PGRFGALDIQA-GQ-VRSFQE----KP---------------KGDGAMINGGFFVLNPS  197 (259)
T ss_dssp             CC-------------------CCCSEEEEEET-TE-EEEEEE----SC---------------SCCSCCEECCCEEECGG
T ss_pred             cc-------------------cccCCceeccc-ce-EEeeee----cc---------------ccceeeecceeccccch
Confidence            21                   23344444433 22 222221    11               13457889999999999


Q ss_pred             HHHHHHhcCccccccccchhhHHHHhhhcccccccCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCc
Q 017849          219 VLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR  298 (365)
Q Consensus       219 vl~~~~~~~~~~~s~~~d~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (365)
                      ++..+ .+.  ..++..++++.|++++                                                     
T Consensus       198 ~~~~i-~~~--~~~~~~~~l~~l~~~~-----------------------------------------------------  221 (259)
T d1tzfa_         198 VIDLI-DND--ATTWEQEPLMTLAQQG-----------------------------------------------------  221 (259)
T ss_dssp             GGGGC-CST--TCCTTTHHHHHHHHTT-----------------------------------------------------
T ss_pred             hhhhc-ccC--cCccHHHHHHHHHhcC-----------------------------------------------------
Confidence            88544 432  3456678899887652                                                     


Q ss_pred             eeEEEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 017849          299 THKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (365)
Q Consensus       299 ~~~~~~~~~~~~~y~~ri~~~~~Y~~~n~~~l~  331 (365)
                        ++++|.+  +|||..|+|+..|.++|+.+.+
T Consensus       222 --~v~~~~~--~g~W~didt~~d~~~~~~~~~~  250 (259)
T d1tzfa_         222 --ELMAFEH--PGFWQPMDTLRDKVYLEGLWEK  250 (259)
T ss_dssp             --CEEEEEE--CSCEEECCSHHHHHHHHHHHHT
T ss_pred             --CeEEEEe--CCEEEECCCHHHHHHHHHHHHc
Confidence              3477777  7899999999999999988765

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.9e-27  Score=213.37  Aligned_cols=190  Identities=19%  Similarity=0.257  Sum_probs=133.2

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceecee-CCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcc
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv-~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~   78 (365)
                      |++.|||||||.||||+||+|..+||||+|| +|+|||+|+++++... +.++++|++++..  +.+.++    ..  .+
T Consensus         1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~--~~~~~~----~~--~~   72 (268)
T d2cu2a2           1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQ--EAVARP----YA--DG   72 (268)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGG--HHHHGG----GC--SS
T ss_pred             CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHH--HHHhhh----hc--cc
Confidence            8889999999999999999667889999997 5699999999999774 5778888887542  233322    21  24


Q ss_pred             eEEEEcCCCCChHHHHHHHHHHc---CCCcEEEEeCCcccCCChH--HHHHH---HHhcCCeEEEEEeeeccCCCccCCC
Q 017849           79 VEVATVPEDVGTAGALRAIAHHL---TAKDVLVVSGDLVSDVPPG--AVTAA---HRRHDAVVTAMICSVPVSGLSEAGS  150 (365)
Q Consensus        79 v~i~~~~~~~gt~~al~~~~~~i---~~~~~lv~~~D~i~~~~l~--~~l~~---h~~~~a~~t~l~~~~~~~~~~~~~~  150 (365)
                      +.++.++...||+.++..+...+   .++.++|++||.++..++.  ..+..   +.+.++.+|+......         
T Consensus        73 ~~ii~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------  143 (268)
T d2cu2a2          73 IRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTR---------  143 (268)
T ss_dssp             SEEEEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSS---------
T ss_pred             cceeeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccccc---------
Confidence            66777888899999888775433   2567999999998877643  33333   2345666676654322         


Q ss_pred             CCCccCCCCCCcceEEEEcCCCc---EEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          151 SGAKDKTKKPGRYNIIGMDPTKQ---FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       151 ~~~~~~~~~~~~~~~v~~d~~~~---~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                              .+..||++.+++++.   .+..+.|+++.+..    ....       ....++++|||+|++++|.+.+++
T Consensus       144 --------~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~----~~~~-------~~~~~~N~Giy~f~~~~l~~~~~~  203 (268)
T d2cu2a2         144 --------PETEYGYIRLGPREGAWYRGEGFVEKPSYAEA----LEYI-------RKGYVWNGGVFAFAPATMAELFRR  203 (268)
T ss_dssp             --------CCSSSCEEEEEEEETTEEEEEEEECCCCHHHH----HHHH-------HTTCEEEEEEEEECHHHHHHHHHH
T ss_pred             --------cccccceEEeccccccchhhheeecccchhhh----hhhh-------ccCcccchhhhhcchHHHHHHHHh
Confidence                    367899999876532   35566654432211    1111       123789999999999999766543

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.92  E-value=1.3e-24  Score=190.76  Aligned_cols=168  Identities=15%  Similarity=0.209  Sum_probs=119.8

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |+|+|||||||.||||+|+ |...||||+||+|+|||+|+++.+..+|+++|+|++++..  +.+.. +...    .++.
T Consensus         2 m~mkaiIlaaG~GtRl~p~-t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~--e~i~~-~~~~----~~i~   73 (229)
T d1jyka_           2 IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK--EQFDY-LKEK----YGVR   73 (229)
T ss_dssp             CCCEEEEEECSCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTG--GGGTH-HHHH----HCCE
T ss_pred             CceeEEEECCCCcccCCcc-ccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccch--hhhhh-hhhh----cccc
Confidence            9999999999999999999 9999999999999999999999999999999999998653  35543 3332    2456


Q ss_pred             EEEc--CCCCChHHHHHHHHHHcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849           81 VATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (365)
Q Consensus        81 i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (365)
                      ++..  ....|++++++.+.+.+. +++++.++|+++...+...+    .. +  .++...+.                 
T Consensus        74 i~~~~~~~~~Gt~~sl~~a~~~l~-~~~ii~~dd~~~~~~~~~~~----~~-~--~~~~~~~~-----------------  128 (229)
T d1jyka_          74 LVFNDKYADYNNFYSLYLVKEELA-NSYVIDADNYLFKNMFRNDL----TR-S--TYFSVYRE-----------------  128 (229)
T ss_dssp             EEECTTTTTSCTHHHHHTTGGGCT-TEEEEETTEEESSCCCCSCC----CS-E--EEEECEES-----------------
T ss_pred             ccccccccccccccccccchhhhc-ccccccccccccccchhhhh----hc-c--ccceeeee-----------------
Confidence            6654  346899999999988774 56776666666655443211    11 2  22222221                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHH
Q 017849          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (365)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~  223 (365)
                      ++..++++..++++.+ ..+.     +++                .+.+..+|+|++++.....+
T Consensus       129 ~~~~~~~~~~~~~~~i-~~~~-----~~~----------------~~~~~~~gi~~~~~~~~~~~  171 (229)
T d1jyka_         129 DCTNEWFLVYGDDYKV-QDII-----VDS----------------KAGRILSGVSFWDAPTAEKI  171 (229)
T ss_dssp             SCSSCCEEEECTTCBE-EEEE-----CCC----------------SSEEBCCSEEEECHHHHHHH
T ss_pred             eccccceeEEccCCce-eeEE-----Eec----------------ccceEEEEEEEEcHHHHHHH
Confidence            1445677888887764 4443     221                23567789999998866544

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.87  E-value=3.5e-21  Score=170.27  Aligned_cols=179  Identities=21%  Similarity=0.302  Sum_probs=130.3

Q ss_pred             eEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEEE
Q 017849            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (365)
Q Consensus         4 ~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~   83 (365)
                      .|||||||.||||+|    .+||||+||+|+|||+|+++.|..+|+++++|++++..  +.+..+..      ....+..
T Consensus         3 ~AIIlAaG~GtRl~~----~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~--~~~~~~~~------~~~~~~~   70 (250)
T d1g97a2           3 FAIILAAGKGTRMKS----DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKA--ELVEEVLA------GQTEFVT   70 (250)
T ss_dssp             EEEEECCCCCGGGCC----SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTH--HHHHHHTT------TTSEEEE
T ss_pred             EEEEECCCCCCCCCC----CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEeccccc--chhhhhcc------ccccccc
Confidence            699999999999965    56999999999999999999999999999999999763  23333332      2344555


Q ss_pred             cCCCCChHHHHHHHHHHcCC--CcEEEEeC-C-cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849           84 VPEDVGTAGALRAIAHHLTA--KDVLVVSG-D-LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (365)
Q Consensus        84 ~~~~~gt~~al~~~~~~i~~--~~~lv~~~-D-~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (365)
                      .....|+..++..+...+..  ++++++.+ | ++...++..+++.|...++.+++...+..                 .
T Consensus        71 ~~~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-----------------~  133 (250)
T d1g97a2          71 QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD-----------------N  133 (250)
T ss_dssp             CSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS-----------------C
T ss_pred             cccccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceec-----------------c
Confidence            66778999998888776652  34445544 4 45667899999999999998888766543                 2


Q ss_pred             CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                      +..++.+..+..+.+ ..+.++++    ..          ......++.++|+|+|+...|..+++.
T Consensus       134 ~~~~~~~~~~~~~~v-~~~~~~~~----~~----------~~~~~~~~~~~g~y~f~~~~l~~~l~~  185 (250)
T d1g97a2         134 PFGYGRIVRNDNAEV-LRIVEQKD----AT----------DFEKQIKEINTGTYVFDNERLFEALKN  185 (250)
T ss_dssp             CTTSCEEEECTTCCE-EEEECGGG----CC----------HHHHTCCEEEEEEEEEEHHHHHHHHTT
T ss_pred             cCCCceEEEeeceEE-EEeecccc----cc----------ccccccceeeeeeeecchHHHHHHHHH
Confidence            456777777776654 34432111    10          001245788999999999988877654

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.7e-18  Score=152.80  Aligned_cols=180  Identities=15%  Similarity=0.226  Sum_probs=117.8

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      .|++||||||.||||+|    .+||||+||+|||||+|+|+.+..+|+++|+|++++..  +.+..+..     .....+
T Consensus         2 ~MkvIILAAG~GtRm~~----~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~--~~~~~~~~-----~~~~~~   70 (248)
T d2oi6a2           2 AMSVVILAAGKGTRMYS----DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGG--DLLKQALK-----DDNLNW   70 (248)
T ss_dssp             CEEEEEECCSCCGGGCC----SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCH--HHHHHHCC-----CTTEEE
T ss_pred             CceEEEECCCCCCCCCC----CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCccc--ceeeeecc-----cccccc
Confidence            47899999999999954    67999999999999999999999999999999999763  34444332     223445


Q ss_pred             EEcCCCCChHHHHHHHHHHcCC-CcEEEEeCCcccCCChHHHHHHH-HhcCCeEEEEEeeeccCCCccCCCCCCccCCCC
Q 017849           82 ATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAH-RRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~i~~~~l~~~l~~h-~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (365)
                      +......|+++++..+...+.. .++++..+|..+... ..+-..+ ........++.....                 +
T Consensus        71 ~~~~~~~g~~~~~~~~~~~i~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------~  132 (248)
T d2oi6a2          71 VLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISV-ETLQRLRDAKPQGGIGLLTVKLD-----------------D  132 (248)
T ss_dssp             EECSSCCCHHHHHHHHGGGSCTTSEEEEEETTCTTCCH-HHHHHHHHHCCTTSEEEEEEECS-----------------C
T ss_pred             cccccCcccHHHHHhhhhhhccccceeeecCccccccc-hhHHHHHHHhhccccceeEEEec-----------------C
Confidence            5667789999999999888764 457777777655432 2221222 223333344433321                 2


Q ss_pred             CCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHHhc
Q 017849          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                      +..++.+..+. +..+....     ++...          .......+..++.|+|+.+.|..++..
T Consensus       133 ~~~~~~~~~~~-~~~~~~~~-----~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~l~~  183 (248)
T d2oi6a2         133 PTGYGRITREN-GKVTGIVE-----HKDAT----------DEQRQIQEINTGILIANGADMKRWLAK  183 (248)
T ss_dssp             CTTSCEEEEET-TEEEEEEC-----GGGCC----------TTGGGCCEEEEEEEEEEHHHHHHHHTT
T ss_pred             Ccccccccccc-Cccceeee-----ccCCC----------hhhhhhhhhhhhhhccchHHHHHHHHH
Confidence            44556665554 33322222     11110          002234677889999999988777654

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=9.2e-16  Score=134.12  Aligned_cols=116  Identities=25%  Similarity=0.316  Sum_probs=90.6

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      |+..|||||||+|+||+++ + ..||+|+|++|||||+|+++.+..+|+++|+|++++...                ...
T Consensus         1 M~~~avIlA~G~~~r~~r~-g-~~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~----------------~~~   62 (231)
T d2dpwa1           1 MRPSAIVLAGGKEAWAERF-G-VGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV----------------PAP   62 (231)
T ss_dssp             CCCEEEEECCCBCSGGGTT-T-CSBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCS----------------SCC
T ss_pred             CCceEEEECCCCCCCCCCC-C-CCCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeecccc----------------cee
Confidence            8999999999999999988 6 357999999999999999999999999888888774421                011


Q ss_pred             EEEcCCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEE
Q 017849           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~  135 (365)
                      ........|..+++..+++.+. +++++++||.  +....++.+++.+.+.++.+.+
T Consensus        63 ~~~~~~~~~~~~~v~~al~~~~-~~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  118 (231)
T d2dpwa1          63 ALTLPDRGGLLENLEQALEHVE-GRVLVATGDIPHLTEEAVRFVLDKAPEAALVYPI  118 (231)
T ss_dssp             SEEECCCSSHHHHHHHHHHTCC-SEEEEEETTCTTCCHHHHHHHHHHCCSCSEEEEE
T ss_pred             eeecccchHHHHHHHHHHHhhc-CceEEeeCCCccCCHHHHHHHHHHhhhcCceEEE
Confidence            1122456889999999999884 6899999994  5556688888876554444333

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=3.2e-15  Score=129.95  Aligned_cols=120  Identities=19%  Similarity=0.254  Sum_probs=84.8

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhC-CCCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.|||||||.|+||    ..+.||+|+|++|||||+|+++.+.++ ++++|+|++++...  .+......   ....+
T Consensus         2 M~i~AIILAaG~gtRm----~~~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~--~~~~~~~~---~~~~v   72 (225)
T d1i52a_           2 LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDS--RFAQLPLA---NHPQI   72 (225)
T ss_dssp             CCEEEEEEECCCCGGG----CCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCC--SGGGSGGG---GCTTE
T ss_pred             CCEEEEEeCCCcceeC----CCCCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhh--hhhhhhhc---ccccc
Confidence            8999999999999999    678999999999999999999999887 58999999885432  22221111   11234


Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCc-EEEEeCC--cccCCChHHHHHHHHhcCC
Q 017849           80 EVATVPEDVGTAGALRAIAHHLTAKD-VLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a  131 (365)
                      .+..  ...+..++++.+...+.+.+ +++..+|  ++...++..++........
T Consensus        73 ~~~~--~~~~~~~sv~~~~~~~~~~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~  125 (225)
T d1i52a_          73 TVVD--GGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRT  125 (225)
T ss_dssp             EEEE--CCSSHHHHHHHHHHTSTTCSEEEECCTTCTTCCHHHHHHHHGGGGTCSS
T ss_pred             cccc--CCcchhHHHHhhhcccCccceeeeeccCCCCCCHHHHHHHHhhhhhccc
Confidence            3333  34566789998988886544 5556677  4444556666666554433

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=2.7e-14  Score=123.79  Aligned_cols=120  Identities=19%  Similarity=0.293  Sum_probs=83.3

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++ |||||||.|+||    +.+.||+|++++|+|||+|+|+.+..++ +++|+|+++.+..     ++..........+
T Consensus         3 M~i-AIILAaG~gtRm----~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~-----~~~~~~~~~~~~~   72 (221)
T d1vpaa_           3 MNV-AILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF-----EVVEKRVFHEKVL   72 (221)
T ss_dssp             CEE-EEEEECCCCGGG----CCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGH-----HHHHTTCCCTTEE
T ss_pred             CeE-EEEccCcCcccC----CCCCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhh-----hHHHhhhcccccc
Confidence            665 899999999999    6788999999999999999999998874 7899998874321     2222221111233


Q ss_pred             EEEEcCCCCChHHHHHHHHHHc---CCCcEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 017849           80 EVATVPEDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i---~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~  132 (365)
                      .++.  ...+...++..+...+   ..+.++++.||  ++....+..+++.+++....
T Consensus        73 ~~~~--~~~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~  128 (221)
T d1vpaa_          73 GIVE--GGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAA  128 (221)
T ss_dssp             EEEE--CCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEE
T ss_pred             cccc--ccccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhcccccc
Confidence            3333  3344555555554443   24668999999  45556688888888775543

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.46  E-value=1.5e-13  Score=119.51  Aligned_cols=123  Identities=17%  Similarity=0.245  Sum_probs=82.3

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      +.+||||||.|+||    ..+.||+|++++|||||+|+|+.+..++ +++|+|+++... .+.+.++..     .....+
T Consensus         5 i~~IIlAaG~GtRm----~~~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~-~~~~~~~~~-----~~~~~~   74 (226)
T d1w77a1           5 VSVILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFF-RDIFEEYEE-----SIDVDL   74 (226)
T ss_dssp             EEEEEECCC-----------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGG-THHHHTTTT-----SCSSEE
T ss_pred             eEEEEeCCccCccC----cCCCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhh-hhhhhcccc-----cccccc
Confidence            46899999999999    6789999999999999999999998885 688888887432 122322221     223333


Q ss_pred             EEcCCCCChHHHHHHHHHHcCC--CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 017849           82 ATVPEDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (365)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (365)
                      ........+.++++.++..+..  +.+++..||  ++....+..+++.+...++.++.
T Consensus        75 ~~~~gg~~r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i~~  132 (226)
T d1w77a1          75 RFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLG  132 (226)
T ss_dssp             EEECCCSSHHHHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEE
T ss_pred             ccccccchhhhhhhhhHhhhccccccceecccccccccHHHhhhhhhhhhccCceeec
Confidence            3333444567889988887752  457777888  45556788888888877765544

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=99.43  E-value=2.2e-13  Score=118.35  Aligned_cols=125  Identities=17%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      ++..|||||||.|+||    ...+||+|++++|+|||+|+++.+.+++ ++.++|+++..+   .+.+.+...+.   .+
T Consensus         2 ~K~iAIIlAaG~gtRm----~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~---~~~~~~~~~~~---~~   71 (226)
T d1vgwa_           2 RKNIALIPAAGIGVRF----GADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED---TFADKVQTAFP---QV   71 (226)
T ss_dssp             CCEEEEEECC--------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC---STHHHHHHHCT---TS
T ss_pred             CceEEEEeCCCCcccC----CcCCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhh---hhhhhhccccc---ce
Confidence            3567999999999999    6778999999999999999999999887 577777776442   23344443321   22


Q ss_pred             EEEEcCCCCChHHHHHHHHHHc----C---CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEE
Q 017849           80 EVATVPEDVGTAGALRAIAHHL----T---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAM  136 (365)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i----~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l  136 (365)
                      ... ........+++..++..+    .   .+.+++..||  ++....+..+++.+...+....+.
T Consensus        72 ~~~-~~g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~  136 (226)
T d1vgwa_          72 RVW-KNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILA  136 (226)
T ss_dssp             EEE-CCCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEE
T ss_pred             eec-cccccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceeec
Confidence            222 222333444444443322    1   2346777777  455566888999888776665443

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=99.39  E-value=2.8e-13  Score=115.70  Aligned_cols=115  Identities=19%  Similarity=0.266  Sum_probs=85.8

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      ++.+||||||.|+||    ....||+|++++|+|||+|+++++.... ++.|+|++...   +.    +... .  ..+.
T Consensus         1 ~is~IILAaG~g~Rm----g~~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~~---~~----~~~~-~--~~~~   66 (205)
T d1w55a1           1 EMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNI---TY----MKKF-T--KNYE   66 (205)
T ss_dssp             CEEEEEECCSCCTTT----CSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCH---HH----HHTT-C--SSSE
T ss_pred             CeEEEEeCCccCeeC----CcCCCceeEEECCEEHHHHHHHHHHhhccccccccccccc---cc----cccc-c--cccc
Confidence            467899999999999    6788999999999999999999998876 67777776522   12    2221 1  1344


Q ss_pred             EEEcCCCCChHHHHHHHHHHcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 017849           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (365)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~  132 (365)
                      ++.  +.....++++.+++.+..+.+++..||  ++....+..+++.+.+.++.
T Consensus        67 ~v~--Gg~~r~~Sv~~gl~~~~~~~VlIhd~~rP~i~~~~i~~li~~~~~~~~~  118 (205)
T d1w55a1          67 FIE--GGDTRAESLKKALELIDSEFVMVSDVARVLVSKNLFDRLIENLDKADCI  118 (205)
T ss_dssp             EEE--CCSSHHHHHHHHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGGCSEE
T ss_pred             ccc--cccchhhhhhhhhhhhhhcceeeeccCcccCcHHHHHHHHhhhhccccc
Confidence            443  445567899999998876778888898  56666788888887665543

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=99.34  E-value=1.4e-11  Score=107.83  Aligned_cols=190  Identities=16%  Similarity=0.161  Sum_probs=111.0

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +.|||+|.|.++|+    ..   |+|.+|+|+|||+|+++.+..+++++|+|++...    .+.++....   +..+.+.
T Consensus         2 ~i~iIpAR~gSkri----p~---KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd~~----~i~~~~~~~---g~~v~~~   67 (246)
T d1vh1a_           2 FVVIIPARYASTRL----PG---KPLVDINGKPMIVHVLERARESGAERIIVATDHE----DVARAVEAA---GGEVCMT   67 (246)
T ss_dssp             CEEEEECCCCCC------CC---TTTCEETTEEHHHHHHHHHHHTTCSEEEEEESCH----HHHHHHHHT---TCEEEEC
T ss_pred             EEEEEecCCCCcCC----CC---chhhhcCCccHHHHHHHHHHHcCCCcEEEEecCc----cccchhhcc---cccceee
Confidence            57999999999999    33   9999999999999999999999999999999743    566666543   1223333


Q ss_pred             EcCCCCChHHHHHHHHHHcCC--CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849           83 TVPEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (365)
                      ..+...++.............  +.++.+.||.  +...++..+++.+.....+..........  ....          
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~----------  135 (246)
T d1vh1a_          68 RADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHN--AEEA----------  135 (246)
T ss_dssp             C-----CHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCC--HHHH----------
T ss_pred             cccccccchHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccc--hhcc----------
Confidence            223345555444433333322  3477788995  34456888888888877766555443321  1000          


Q ss_pred             CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhcCcceeccCcccceeeeeCHHHHHHHH
Q 017849          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (365)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giyi~s~~vl~~~~  224 (365)
                      ......-+..+.+|..+ .+..     .....................+..+|+|+|++..|..+.
T Consensus       136 ~~~~~vk~v~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~  195 (246)
T d1vh1a_         136 FNPNAVKVVLDAEGYAL-YFSR-----ATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYV  195 (246)
T ss_dssp             TCTTSCEEEECTTSBEE-EEES-----SCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHH
T ss_pred             cCCCcceeeecccCccc-cccc-----ccchhhhhhhhhhhhccchhhheecceeeechhhhhhhc
Confidence            01122345567777654 3321     111111111111111122345678899999999997663

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=4.3e-12  Score=106.48  Aligned_cols=107  Identities=18%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      ++.|||||||+|+||    . ..||+|++++|+|||+|+++.+... +.+|+|+++...   ..   ...     .++.+
T Consensus         3 ~i~~iILAgG~ssRm----G-~~~K~ll~~~g~~ll~~~l~~l~~~-~~~ivv~~~~~~---~~---~~~-----~~~~v   65 (188)
T d1e5ka_           3 TITGVVLAGGKARRM----G-GVDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQ---EI---YQA-----SGLKV   65 (188)
T ss_dssp             SEEEEEECCCCCSSS----C-SSCGGGSEETTEEHHHHHHHHHHHH-CSCEEEECSSSH---HH---HHT-----TSCCE
T ss_pred             ceeEEEEcCCCCcCC----C-CCCcccCEECCEehhHHHHhhhccc-ccccccccCccH---Hh---hhh-----cCCCc
Confidence            467999999999999    3 3579999999999999999999876 567888876442   11   111     12333


Q ss_pred             EEc--CCCCChHHHHHHHHHHcCCCcEEEEeCCc--ccCCChHHHHHH
Q 017849           82 ATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAA  125 (365)
Q Consensus        82 ~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~  125 (365)
                      ...  .+..+...++..+......+.+++++||+  +....+..+++.
T Consensus        66 ~~d~~~~~~~~~~g~~~~~~~~~~~~vlv~~~D~P~i~~~~i~~L~~~  113 (188)
T d1e5ka_          66 IEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQ  113 (188)
T ss_dssp             ECCCTTCCCSHHHHHHHHHHHCCSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             cccccccccchhHHHHHHHHhcccceEEEeccCCCCCCHHHHHHHHHh
Confidence            322  33466777777777777677899999995  444446666554

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.24  E-value=5.9e-11  Score=104.19  Aligned_cols=190  Identities=15%  Similarity=0.181  Sum_probs=111.6

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCCCCeEEEEecCcchHHHHHHHHHhhhcCCcceEEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~   82 (365)
                      +.+||+|.|.++|+    ..   |.|.+++|+|||+|+++.+.++++++|+|++..+    .+.+....+   ...+.+.
T Consensus         2 ~~~iIpAR~gSkRl----p~---Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd~~----~i~~~~~~~---~~~~~~~   67 (255)
T d1vica_           2 FTVIIPARFASSRL----PG---KPLADIKGKPMIQHVFEKALQSGASRVIIATDNE----NVADVAKSF---GAEVCMT   67 (255)
T ss_dssp             CEEEEECCCCCSSS----TT---GGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCH----HHHHHHHHT---TCEEEEC
T ss_pred             EEEEEecCCCCCCC----CC---chhhhhCCcCHHHHHHHHHHHCCCCeEEEEcCCc----ccchhhhhh---cccccee
Confidence            57999999999998    33   9999999999999999999999999999998743    445544432   1223333


Q ss_pred             EcCCCCChHHHHHHHHHHcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCC
Q 017849           83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (365)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (365)
                      ......|+..+...+.....  .+.++++.||.  +...++..+++.+.......+.......  .+.+          .
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~--~~~~----------~  135 (255)
T d1vica_          68 SVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIH--DAEE----------L  135 (255)
T ss_dssp             CCSSCCHHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECC--CHHH----------H
T ss_pred             eeccCCcchhhHHHHHHhhccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeecc--chhh----------c
Confidence            33334455444444444332  23477788884  3345678888888877666655544321  0100          0


Q ss_pred             CCCcceEEEEcCCCcEEEEeeccccccccccccHHHHhhc---C-cceeccCcccceeeeeCHHHHHHHH
Q 017849          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAV---G-QMDIRADLMDAHMYAFNRSVLQEVL  224 (365)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~---~-~~~~~~~l~~~giyi~s~~vl~~~~  224 (365)
                      ..........++.+..+..... .     ...........   . .........+.|+|+|++..|..+.
T Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~  199 (255)
T d1vica_         136 FNPNAVKVLTDKDGYVLYFSRS-V-----IPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYV  199 (255)
T ss_dssp             TCTTSCEEEECTTSBEEEEESS-C-----SSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHH
T ss_pred             cCccceeeeeccCCcccccccc-c-----ccccchhhhhccchhhcccccchheeeeeecccHHHHhhhh
Confidence            1223344556666654333221 1     00111110000   0 0012234567899999999987764

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=99.24  E-value=1.2e-10  Score=101.66  Aligned_cols=115  Identities=19%  Similarity=0.216  Sum_probs=82.6

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceE
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~   80 (365)
                      +..+||+|.|.++||    ..   |+|++++|+|||+|+++++.+++ +++|+|++...    .+.+....+     +..
T Consensus         2 k~i~iIpAR~~SkRl----~~---Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~----~i~~~~~~~-----~~~   65 (245)
T d1h7ea_           2 KAVIVIPARYGSSRL----PG---KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDP----RVEQAVQAF-----GGK   65 (245)
T ss_dssp             CEEEEEECCSCCSSS----TT---GGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCH----HHHHHHHHT-----TCE
T ss_pred             CEEEEEcCCCCCcCC----CC---ccccccCCccHHHHHHHHHHhCCCCCeEEEecccc----cchhhhhhc-----Cce
Confidence            457899999999998    33   99999999999999999998885 78888887743    444444432     344


Q ss_pred             EEEcCCC-CChHHHHHHHHHHcCCCcEEEEeCCccc--CCChHHHHHHHHhcCCe
Q 017849           81 VATVPED-VGTAGALRAIAHHLTAKDVLVVSGDLVS--DVPPGAVTAAHRRHDAV  132 (365)
Q Consensus        81 i~~~~~~-~gt~~al~~~~~~i~~~~~lv~~~D~i~--~~~l~~~l~~h~~~~a~  132 (365)
                      +...... .++.+.+..+...+..+.++++.+|..+  ...+..+++.+......
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~  120 (245)
T d1h7ea_          66 AIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPAL  120 (245)
T ss_dssp             EEECCSCCSSHHHHHHHHHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTC
T ss_pred             EEEecCccccccHHHHHHHHhcCCCEEEEecchhhhcccccchhhhhcccccccc
Confidence            4444433 4455667777777876778888899533  34577788877765444

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.08  E-value=7.2e-10  Score=95.01  Aligned_cols=120  Identities=16%  Similarity=0.118  Sum_probs=84.6

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcceEE
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i   81 (365)
                      ..|||+|+|.++|+    ..   |+|++++|+|||+|+++.+.+++ +++|+|.+..    +.+.+.+..+     +..+
T Consensus         5 ~iaiIpar~~S~R~----p~---K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~----~~i~~i~~~~-----~~~~   68 (225)
T d1eyra_           5 NIAVILARQNSKGL----PL---KNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG----GLIAEEAKNF-----GVEV   68 (225)
T ss_dssp             EEEEEECCSCCSSS----TT---GGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESC----HHHHHHHHHT-----TCEE
T ss_pred             EEEEEccCCCCcCC----CC---ccccccCCeEHHHHHHHHHHHcCCCceEEEeecc----chhhhhhhhh-----ccee
Confidence            35899999999999    33   99999999999999999999998 6888877763    3555555443     2333


Q ss_pred             EEc-----CCCCChHHHHHHHHHHcCC--CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEe
Q 017849           82 ATV-----PEDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMIC  138 (365)
Q Consensus        82 ~~~-----~~~~gt~~al~~~~~~i~~--~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~  138 (365)
                      ...     ....++.+.++.+.+.+..  +.++.+.||  ++...++..+++.+.+.+.+..+.+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~  134 (225)
T d1eyra_          69 VLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSAC  134 (225)
T ss_dssp             EECCHHHHSTTCCHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEE
T ss_pred             eeeccccccccccchhhccccccccccccceEEEeeccccccccccccccceeeccccccccceee
Confidence            322     2234566777777766543  558888899  44456788888888777666444333

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=1.2e-09  Score=93.93  Aligned_cols=123  Identities=14%  Similarity=0.118  Sum_probs=88.7

Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCceeceeCCcchHHHHHHHHHhCC-CCeEEEEecCcchHHHHHHHHHhhhcCCcce
Q 017849            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (365)
Q Consensus         1 M~~~avIlA~G~g~rl~pL~t~~~pK~llpv~gkplI~~~L~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~v   79 (365)
                      |++.|||+|+|.++||    ..   |+|++++|+|||+|+++++.+++ +++|+|.+...    .+.+....+     ++
T Consensus         2 ~ki~aiIpaR~~S~Rl----p~---K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~~----~i~~~~~~~-----~~   65 (228)
T d1qwja_           2 PHLAALVLARGGSKGI----PL---KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHD----EIENVAKQF-----GA   65 (228)
T ss_dssp             CCEEEEEECCSCCSSS----SC---TTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCH----HHHHHHHHT-----TC
T ss_pred             CCEEEEeccCCCCCCC----CC---cchhhhCCeeHHHHHHHHHHhcCCcceEEEecchh----hhhhhhhhc-----Cc
Confidence            6789999999999999    33   99999999999999999998887 68888877632    455555432     34


Q ss_pred             EEEEc-----CCCCChHHHHHHHHHHcC-CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 017849           80 EVATV-----PEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (365)
Q Consensus        80 ~i~~~-----~~~~gt~~al~~~~~~i~-~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (365)
                      .+...     .......+.+..+..... .+.++++.+|  ++...++..+++.++..+++..+.+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~  133 (228)
T d1qwja_          66 QVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVR  133 (228)
T ss_dssp             EEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred             cccccccccccccchhhhhhhhccccccccceeeeecccccccCchhhhhhhhhhhccCccccccccc
Confidence            44432     122455677777766554 3457777788  455567899999998888876554443

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.62  E-value=9e-07  Score=81.10  Aligned_cols=134  Identities=12%  Similarity=0.130  Sum_probs=90.9

Q ss_pred             cceEEEEcCCCCCCCCCCCCCCCCceeceeC-CcchHHHHHHHHHh----CCC-CeEEEEecCcchHHHHHHHHHhhhcC
Q 017849            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAAYVD   75 (365)
Q Consensus         2 ~~~avIlA~G~g~rl~pL~t~~~pK~llpv~-gkplI~~~L~~l~~----~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~   75 (365)
                      ++.+|+||||.||||    +.+.||.++||+ |+++++..++++..    .|. -.++|.++... .+.+.++++.+..-
T Consensus        74 kvavv~LaGG~GTRL----G~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T-~~~t~~~l~~~~~f  148 (378)
T d2icya2          74 KLVVLKLNGGLGTTM----GCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNT-HDDTHKIVEKYTNS  148 (378)
T ss_dssp             TEEEEEEECCBSGGG----TCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTT-HHHHHHHHGGGTTS
T ss_pred             CEEEEEecCCccccc----CCCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCC-hHHHHHHHHHhccC
Confidence            356799999999999    788999999996 67999999999864    232 24677777554 35788888764322


Q ss_pred             CcceEEEEc----------------C---C-----CCChHHHHHHH-----HHHcC---CCcEEEEeCCcccCCChHHHH
Q 017849           76 RLHVEVATV----------------P---E-----DVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSDVPPGAVT  123 (365)
Q Consensus        76 ~~~v~i~~~----------------~---~-----~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~~~l~~~l  123 (365)
                      +..+.+..|                +   .     +.|.|+.....     ++.+.   .+++.+.+.|.+....--.++
T Consensus       149 g~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~l  228 (378)
T d2icya2         149 NVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTIL  228 (378)
T ss_dssp             SSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHH
T ss_pred             CCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHH
Confidence            223333221                0   0     45777655432     23232   368999999976654334678


Q ss_pred             HHHHhcCCeEEEEEeee
Q 017849          124 AAHRRHDAVVTAMICSV  140 (365)
Q Consensus       124 ~~h~~~~a~~t~l~~~~  140 (365)
                      ..|.++++++++-+.+.
T Consensus       229 G~~~~~~~~~~~kvv~K  245 (378)
T d2icya2         229 KHLIQNKNEYCMEVTPK  245 (378)
T ss_dssp             HHHHHHTCSEEEEEEEC
T ss_pred             HHHHhcCCcceeEEEec
Confidence            88999999988766543

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=97.49  E-value=0.003  Score=59.13  Aligned_cols=192  Identities=13%  Similarity=0.166  Sum_probs=111.3

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCCceecee---CCcchHHHHHHHHHh----------CCC-CeEEEEecCcchHHHHHHH
Q 017849            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLEL----------SNI-KDLIVVVEGADAALRVGGW   68 (365)
Q Consensus         3 ~~avIlA~G~g~rl~pL~t~~~pK~llpv---~gkplI~~~L~~l~~----------~gi-~~v~vv~~~~~~~~~i~~~   68 (365)
                      +-+|+||||.||||    ....||.++||   .|+.+++..++.+..          .++ -.++|.++... .+.+.++
T Consensus       103 vavvllaGG~GTRL----G~~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T-~~~t~~~  177 (501)
T d1jv1a_         103 VAVLLLAGGQGTRL----GVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRT-MESTKEF  177 (501)
T ss_dssp             EEEEEECCCCCCTT----SCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTT-HHHHHHH
T ss_pred             EEEEEECCCccccC----CCCCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhH-hHHHHHH
Confidence            56789999999999    78899999998   478999998887754          222 24677777554 3578888


Q ss_pred             HHh--hhc-CCcceEEEEc----------------C-----CCCChHHHHHHH-----HHHcC---CCcEEEEeCCccc-
Q 017849           69 ISA--AYV-DRLHVEVATV----------------P-----EDVGTAGALRAI-----AHHLT---AKDVLVVSGDLVS-  115 (365)
Q Consensus        69 ~~~--~~~-~~~~v~i~~~----------------~-----~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~-  115 (365)
                      +++  +++ +.-.+.+..|                +     .+.|.|+.....     ++.+.   -+++.+.+.|.+. 
T Consensus       178 l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~  257 (501)
T d1jv1a_         178 FTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV  257 (501)
T ss_dssp             HHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTC
T ss_pred             HHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccc
Confidence            875  221 1112222211                0     135555443322     22221   3678899999643 


Q ss_pred             -CCChHHHHHHHHhcCCeEEEEEeeeccCCCccCCCCCCccCCCCCCcceEEEEcCCCcE-EEEeeccccccccccccHH
Q 017849          116 -DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF-LLHIATGAELEKDTRIRKS  193 (365)
Q Consensus       116 -~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-l~~~~~~~~~ek~~~i~~~  193 (365)
                       ..|. .++..+..+++++.+-+.+..  +|.              +.-|++... +|+. ++.+.         .++..
T Consensus       258 ~~~Dp-~~lG~~~~~~~~~~~kvv~k~--~~~--------------e~~G~l~~~-dg~~~vvEys---------el~~~  310 (501)
T d1jv1a_         258 KVADP-RFIGFCIQKGADCGAKVVEKT--NPT--------------EPVGVVCRV-DGVYQVVEYS---------EISLA  310 (501)
T ss_dssp             CTTCH-HHHHHHHHTTCSEEEEEEECC--STT--------------CSCCEEEEE-TTEEEEECGG---------GSCHH
T ss_pred             cccCH-HHHHHHHhcccceeEEEEEcC--CCC--------------cccceEEEE-CCeEEEEEec---------cCCHH
Confidence             4454 478888889999887665432  121              123444332 2432 22222         12222


Q ss_pred             HHhhcCc-ceeccCcccceeeeeCHHHHHHHHhc
Q 017849          194 ILRAVGQ-MDIRADLMDAHMYAFNRSVLQEVLDQ  226 (365)
Q Consensus       194 ~l~~~~~-~~~~~~l~~~giyi~s~~vl~~~~~~  226 (365)
                      ....... -.......++..++|+-+.|..+++.
T Consensus       311 ~~~~~~~~g~l~f~~~Ni~~~~fsl~fl~~~~~~  344 (501)
T d1jv1a_         311 TAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNV  344 (501)
T ss_dssp             HHHCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred             HHhhccCCCcccccccceeheeeEHHHHHHHHHh
Confidence            2222111 11223456788899999999888654

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.88  E-value=3.9  Score=34.48  Aligned_cols=104  Identities=10%  Similarity=0.087  Sum_probs=67.4

Q ss_pred             eceeCCc--chHHHHHHHHHhCCC----CeEEEEecCcch---HHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHH
Q 017849           28 LLPVANR--PVLSYVLEQLELSNI----KDLIVVVEGADA---ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIA   98 (365)
Q Consensus        28 llpv~gk--plI~~~L~~l~~~gi----~~v~vv~~~~~~---~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~   98 (365)
                      .+|+-|+  -.|..+|+.+.+.--    .+|+||=+....   .+.+.+++...   ...+.++..+...|.+.|.-.++
T Consensus        27 IIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~---~~~i~vi~~~~n~G~~~a~N~Gi  103 (328)
T d1xhba2          27 VIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKL---KVPVHVIRMEQRSGLIRARLKGA  103 (328)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSS---SSCEEEEECSSCCCHHHHHHHHH
T ss_pred             EEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhc---CCCeEEEEecccccchHHHHHHH
Confidence            3566675  368889988866532    267777432211   11233444322   23466766667789999888888


Q ss_pred             HHcCCCcEEEEeCCcccC-CChHHHHHHHHhcCCeEE
Q 017849           99 HHLTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDAVVT  134 (365)
Q Consensus        99 ~~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a~~t  134 (365)
                      +....+.++++.+|.+.. .-+..+++...+....+.
T Consensus       104 ~~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v  140 (328)
T d1xhba2         104 AVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVV  140 (328)
T ss_dssp             HHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEE
T ss_pred             HhhhcceeeecCcccccChhHHHHHHHHHhcCCCeEE
Confidence            888778899999996554 458888888777666543

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.66  E-value=0.22  Score=40.11  Aligned_cols=101  Identities=13%  Similarity=0.138  Sum_probs=61.4

Q ss_pred             eceeCCc-chHHHHHHHHHhCCC-CeEEEEecCc--chHHHHHHHHHhhhcCCcceEEEEcCCCCChHHHHHHHHHHcCC
Q 017849           28 LLPVANR-PVLSYVLEQLELSNI-KDLIVVVEGA--DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (365)
Q Consensus        28 llpv~gk-plI~~~L~~l~~~gi-~~v~vv~~~~--~~~~~i~~~~~~~~~~~~~v~i~~~~~~~gt~~al~~~~~~i~~  103 (365)
                      ++|.-|+ ..|..+|+.+.+... .+++||.+..  +..+.+.+    ...+. ...++......|.+.+.-.+++....
T Consensus         8 ii~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~----~~~~~-~~~~~~~~~~~g~~~a~n~~~~~a~g   82 (265)
T d1omza_           8 IMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWN----SLGPH-PIPVIFKPQTANKMRNRLQVFPEVET   82 (265)
T ss_dssp             EEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHH----HTCCC-SSCEEEEECSSCCGGGGGSCCTTCCS
T ss_pred             EEEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHH----Hhccc-ceEEEEecCCCCchhhhhhhHHhCCc
Confidence            4566676 799999999987765 4555555422  11122222    22222 22233334456777776666776767


Q ss_pred             CcEEEEeCCcccCCC-hHHHHHHHHhcCCeE
Q 017849          104 KDVLVVSGDLVSDVP-PGAVTAAHRRHDAVV  133 (365)
Q Consensus       104 ~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~  133 (365)
                      +.++++.+|.+...+ ++.+++.+.+.+..+
T Consensus        83 e~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~  113 (265)
T d1omza_          83 NAVLMVDDDTLISAQDLVFAFSIWQQFPDQI  113 (265)
T ss_dssp             SEEEEECTTEEECHHHHHHHHHHHTTSTTSE
T ss_pred             CEEEEeCcccCCCHHHHHHHHHHHHhCCCcc
Confidence            889999999666544 788888776655443

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.87  E-value=10  Score=30.10  Aligned_cols=99  Identities=8%  Similarity=0.039  Sum_probs=63.2

Q ss_pred             eceeCC-cchHHHHHHHHHhCCCC--eEEEEecCcchHHHHHHHHHhhhcCCcceEEEEcC--------CCCChHHHHHH
Q 017849           28 LLPVAN-RPVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP--------EDVGTAGALRA   96 (365)
Q Consensus        28 llpv~g-kplI~~~L~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~v~i~~~~--------~~~gt~~al~~   96 (365)
                      ++|.-| ...|..+|+.+.+.-..  +|+|+-+..  .+...+.+++.. ....+.+...+        ...|.+.++-.
T Consensus         6 iip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S--~d~t~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~   82 (255)
T d1qg8a_           6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNS--NEETLNVIRPFL-NDNRVRFYQSDISGVKERTEKTRYAALINQ   82 (255)
T ss_dssp             EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSC--CHHHHHHHGGGG-GSTTEEEEECCCCSHHHHHSSCHHHHHHHH
T ss_pred             EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC--CccHHHHHHHhh-hhcccccccccccccccccccchhcccccc
Confidence            355545 47899999999877654  555554422  134445555432 22345555432        34677778888


Q ss_pred             HHHHcCCCcEEEEeCCcccCCC-hHHHHHHHHhc
Q 017849           97 IAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRRH  129 (365)
Q Consensus        97 ~~~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~  129 (365)
                      +++....+.++++.+|.+...+ +..+++.+.+.
T Consensus        83 gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~  116 (255)
T d1qg8a_          83 AIEMAEGEYITYATDDNIYMPDRLLKMVRELDTH  116 (255)
T ss_dssp             HHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccchHHHHHHHHHhC
Confidence            8888877789999999655444 78787777554