Citrus Sinensis ID: 017851

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYANGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF
cccccccccEEEEcccccEEEccccccccccccccccccccccccccccccccccccHHHHHcccccEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEcEEEEEEcccccEEEEcccccccccccEEEccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccEEEcccHHHHHHHHccccccccEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHccEEEEccccccccHHHHHHHHHHHcccccccEEEEcccccccccccHHHHHcccccccccccccccccccccccEEcccc
cccccccccEEEEEcccEEEEEEcccccccEEEEccEEEEccccccccccccccEEcHHHHHcHHHEEEEccEEccEEccHHHHHHHHHHHHHccccccHHHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccEEEEcccccEEEEccHHHHcHHHHccHHHHccccccHHHHHHHHHHcccHHHHHHHHccEEEEcHHHccccHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHcc
madtediqplvcdngtgmvkagfagddapravfpsivgrprhtgvmvgmgqkdayvgdeaqskrgiltlkypiehgivsnwddmEKIWHHTFYNelrvapeehpillteaplnpkanREKMTQIMFETFNAPAMYVAIQAVLSLYAngvshtvpiyegyalpHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVeksyelpdgqvitigaerfrcpevlfqpsmigmesagihettynsimkcdvdirKDLYGNivlsggstmfpgiADRMSKEIsalapssmkikvvapperkysVWIGGSILASLSTFQQMWIAKseydesgpsivhrkcf
MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYANGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILtergysftttaerEIVRDMKEKLAYIALDYEQELETaktssaveksyelpdGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKseydesgpsivhrkcf
MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYANGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF
*********LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAP********KMTQIMFETFNAPAMYVAIQAVLSLYANGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELE**********SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR*************KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK****************
****EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV***MGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYANGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYE***************YELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF
MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYANGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEY*************
*****DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYANGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYANGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query365 2.2.26 [Sep-21-2011]
O81221377 Actin OS=Gossypium hirsut N/A no 1.0 0.968 0.936 0.0
P30171377 Actin-97 OS=Solanum tuber N/A no 1.0 0.968 0.931 0.0
P0CJ47377 Actin-3 OS=Arabidopsis th yes no 1.0 0.968 0.933 0.0
P0CJ46377 Actin-1 OS=Arabidopsis th yes no 1.0 0.968 0.933 0.0
Q10DV7377 Actin-1 OS=Oryza sativa s yes no 1.0 0.968 0.931 0.0
A2XLF2377 Actin-1 OS=Oryza sativa s N/A no 1.0 0.968 0.931 0.0
Q05214377 Actin OS=Nicotiana tabacu N/A no 1.0 0.968 0.928 0.0
P46258377 Actin-3 OS=Pisum sativum N/A no 1.0 0.968 0.928 0.0
Q10AZ4377 Actin-3 OS=Oryza sativa s yes no 1.0 0.968 0.928 0.0
A2XNS1377 Actin-3 OS=Oryza sativa s N/A no 1.0 0.968 0.928 0.0
>sp|O81221|ACT_GOSHI Actin OS=Gossypium hirsutum PE=3 SV=1 Back     alignment and function desciption
 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/377 (93%), Positives = 364/377 (96%), Gaps = 12/377 (3%)

Query: 1   MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNAPAMYVAIQAVLSLYA------------NGVSHTVPIYEGYALPHAILRL 168
           MTQIMFETFNAPAMYVAIQAVLSLYA            +GVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 169 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEK 228
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKLAYIALDYEQELET+KTSS++EK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSIEK 240

Query: 229 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 288
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 289 LSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 348
           LSGG+TMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 349 KSEYDESGPSIVHRKCF 365
           K+EYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377
Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
Gossypium hirsutum (taxid: 3635)
>sp|P30171|ACT11_SOLTU Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1 Back     alignment and function description
>sp|P0CJ47|ACT3_ARATH Actin-3 OS=Arabidopsis thaliana GN=ACT3 PE=1 SV=1 Back     alignment and function description
>sp|P0CJ46|ACT1_ARATH Actin-1 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=1 Back     alignment and function description
>sp|Q10DV7|ACT1_ORYSJ Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1 Back     alignment and function description
>sp|A2XLF2|ACT1_ORYSI Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1 Back     alignment and function description
>sp|Q05214|ACT1_TOBAC Actin OS=Nicotiana tabacum PE=3 SV=1 Back     alignment and function description
>sp|P46258|ACT3_PEA Actin-3 OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q10AZ4|ACT3_ORYSJ Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1 Back     alignment and function description
>sp|A2XNS1|ACT3_ORYSI Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
333595899377 actin [Platycodon grandiflorus] 1.0 0.968 0.949 0.0
356874568377 actin [Chrysanthemum seticuspe f. boreal 1.0 0.968 0.949 0.0
449448633377 PREDICTED: actin-like [Cucumis sativus] 1.0 0.968 0.946 0.0
118481291377 unknown [Populus trichocarpa] 1.0 0.968 0.946 0.0
300484337377 actin [Citrus maxima] 1.0 0.968 0.946 0.0
449437577377 PREDICTED: actin-like [Cucumis sativus] 1.0 0.968 0.944 0.0
356550273377 PREDICTED: actin-97-like [Glycine max] 1.0 0.968 0.944 0.0
356558127377 PREDICTED: actin-like [Glycine max] 1.0 0.968 0.944 0.0
224088196377 actin 3 [Populus trichocarpa] gi|2241378 1.0 0.968 0.944 0.0
380469910377 actin 2 [Annona cherimola] 1.0 0.968 0.941 0.0
>gi|333595899|gb|AEF58501.1| actin [Platycodon grandiflorus] Back     alignment and taxonomy information
 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/377 (94%), Positives = 364/377 (96%), Gaps = 12/377 (3%)

Query: 1   MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNAPAMYVAIQAVLSLYA------------NGVSHTVPIYEGYALPHAILRL 168
           MTQIMFETFNAPAMYVAIQAVLSLYA            +GVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 169 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEK 228
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSSVEK 240

Query: 229 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 288
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 289 LSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 348
           LSGGSTMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 349 KSEYDESGPSIVHRKCF 365
           K+EYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Platycodon grandiflorus

Species: Platycodon grandiflorus

Genus: Platycodon

Family: Campanulaceae

Order: Asterales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356874568|dbj|BAL14664.1| actin [Chrysanthemum seticuspe f. boreale] Back     alignment and taxonomy information
>gi|449448633|ref|XP_004142070.1| PREDICTED: actin-like [Cucumis sativus] gi|449516439|ref|XP_004165254.1| PREDICTED: actin-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118481291|gb|ABK92589.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|300484337|gb|ADK20401.1| actin [Citrus maxima] Back     alignment and taxonomy information
>gi|449437577|ref|XP_004136568.1| PREDICTED: actin-like [Cucumis sativus] gi|449511328|ref|XP_004163927.1| PREDICTED: actin-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356550273|ref|XP_003543512.1| PREDICTED: actin-97-like [Glycine max] Back     alignment and taxonomy information
>gi|356558127|ref|XP_003547359.1| PREDICTED: actin-like [Glycine max] Back     alignment and taxonomy information
>gi|224088196|ref|XP_002308365.1| actin 3 [Populus trichocarpa] gi|224137838|ref|XP_002322664.1| actin 7 [Populus trichocarpa] gi|118481698|gb|ABK92789.1| unknown [Populus trichocarpa] gi|118483656|gb|ABK93722.1| unknown [Populus trichocarpa] gi|118487386|gb|ABK95521.1| unknown [Populus trichocarpa] gi|222854341|gb|EEE91888.1| actin 3 [Populus trichocarpa] gi|222867294|gb|EEF04425.1| actin 7 [Populus trichocarpa] gi|301331528|gb|ADK70741.1| actin [Populus tomentosa] gi|301331531|gb|ADK70742.1| actin [Populus tomentosa] gi|301331533|gb|ADK70743.1| actin [Populus tomentosa] gi|301331536|gb|ADK70744.1| actin [Populus tomentosa] gi|301331540|gb|ADK70745.1| actin [Populus tomentosa] gi|301331543|gb|ADK70746.1| actin [Populus tomentosa] gi|301331546|gb|ADK70747.1| actin [Populus tomentosa] gi|301331549|gb|ADK70748.1| actin [Populus tomentosa] gi|301331552|gb|ADK70749.1| actin [Populus tomentosa] gi|301331555|gb|ADK70750.1| actin [Populus tomentosa] gi|301331558|gb|ADK70751.1| actin [Populus tomentosa] gi|301331560|gb|ADK70752.1| actin [Populus tomentosa] gi|301331563|gb|ADK70753.1| actin [Populus tomentosa] gi|301331566|gb|ADK70754.1| actin [Populus tomentosa] gi|301331569|gb|ADK70755.1| actin [Populus tomentosa] gi|301331573|gb|ADK70756.1| actin [Populus tomentosa] gi|301331576|gb|ADK70757.1| actin [Populus tomentosa] gi|301331579|gb|ADK70758.1| actin [Populus tomentosa] gi|301331582|gb|ADK70759.1| actin [Populus tomentosa] gi|301331585|gb|ADK70760.1| actin [Populus tomentosa] gi|301331588|gb|ADK70761.1| actin [Populus tomentosa] gi|301331591|gb|ADK70762.1| actin [Populus tomentosa] gi|301331594|gb|ADK70763.1| actin [Populus tomentosa] gi|301331597|gb|ADK70764.1| actin [Populus tomentosa] gi|301331599|gb|ADK70765.1| actin [Populus tomentosa] gi|301331603|gb|ADK70766.1| actin [Populus tomentosa] gi|301331606|gb|ADK70767.1| actin [Populus tomentosa] gi|301331609|gb|ADK70768.1| actin [Populus tomentosa] gi|301331611|gb|ADK70769.1| actin [Populus tomentosa] gi|301331613|gb|ADK70770.1| actin [Populus tomentosa] gi|301331615|gb|ADK70771.1| actin [Populus tomentosa] gi|301331617|gb|ADK70772.1| actin [Populus tomentosa] gi|301331619|gb|ADK70773.1| actin [Populus tomentosa] gi|301331622|gb|ADK70774.1| actin [Populus tomentosa] gi|301331625|gb|ADK70775.1| actin [Populus tomentosa] gi|301331628|gb|ADK70776.1| actin [Populus tomentosa] gi|301331631|gb|ADK70777.1| actin [Populus tomentosa] gi|301331634|gb|ADK70778.1| actin [Populus tomentosa] gi|301331637|gb|ADK70779.1| actin [Populus tomentosa] gi|301331640|gb|ADK70780.1| actin [Populus tomentosa] gi|301331643|gb|ADK70781.1| actin [Populus tomentosa] gi|429326368|gb|AFZ78524.1| actin [Populus tomentosa] Back     alignment and taxonomy information
>gi|380469910|gb|AFD62269.1| actin 2 [Annona cherimola] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
TAIR|locus:2040656377 ACT1 "AT2G37620" [Arabidopsis 1.0 0.968 0.933 2.7e-187
TAIR|locus:2084410377 ACT3 "AT3G53750" [Arabidopsis 1.0 0.968 0.933 2.7e-187
TAIR|locus:2178128377 ACT7 "actin 7" [Arabidopsis th 1.0 0.968 0.925 3.1e-186
TAIR|locus:2099302377 ACT11 "AT3G12110" [Arabidopsis 1.0 0.968 0.923 8.2e-186
TAIR|locus:2075160377 ACT12 "AT3G46520" [Arabidopsis 1.0 0.968 0.923 5.8e-185
TAIR|locus:2148298377 ACT4 "actin 4" [Arabidopsis th 1.0 0.968 0.920 1.5e-184
TAIR|locus:2028416377 ACT8 "AT1G49240" [Arabidopsis 1.0 0.968 0.875 5.5e-180
TAIR|locus:2093954377 ACT2 "AT3G18780" [Arabidopsis 1.0 0.968 0.872 1.5e-179
DICTYBASE|DDB_G0289663376 act5 "actin" [Dictyostelium di 0.994 0.965 0.872 3.1e-177
DICTYBASE|DDB_G0289553376 act1 "actin" [Dictyostelium di 0.994 0.965 0.872 3.1e-177
TAIR|locus:2040656 ACT1 "AT2G37620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1816 (644.3 bits), Expect = 2.7e-187, P = 2.7e-187
 Identities = 352/377 (93%), Positives = 363/377 (96%)

Query:     1 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNAPAMYVAIQAVLSLYANG------------VSHTVPIYEGYALPHAILRL 168
             MTQIMFETFNAPAMYVAIQAVLSLYA+G            VSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   169 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEK 228
             DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKL YIALDYEQELETAKTSS+VEK
Sbjct:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDIKEKLCYIALDYEQELETAKTSSSVEK 240

Query:   229 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 288
             +YELPDGQVITIG+ERFRCPEVL+QPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGSERFRCPEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   289 LSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 348
             LSGG+TMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct:   301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   349 KSEYDESGPSIVHRKCF 365
             K+EYDESGPSIVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005856 "cytoskeleton" evidence=TAS
GO:0007010 "cytoskeleton organization" evidence=TAS
GO:0048589 "developmental growth" evidence=IMP
GO:0048767 "root hair elongation" evidence=IMP
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2084410 ACT3 "AT3G53750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178128 ACT7 "actin 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099302 ACT11 "AT3G12110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075160 ACT12 "AT3G46520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148298 ACT4 "actin 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028416 ACT8 "AT1G49240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093954 ACT2 "AT3G18780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289663 act5 "actin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289553 act1 "actin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93131ACTC_BRAFLNo assigned EC number0.85790.98900.9626yesno
P02580ACT3_SOYBNNo assigned EC number0.88320.99720.9680nono
P0CJ47ACT3_ARATHNo assigned EC number0.93361.00.9681yesno
P0CJ46ACT1_ARATHNo assigned EC number0.93361.00.9681yesno
P17126ACT_HYDVUNo assigned EC number0.86470.99720.9680N/Ano
A3C6D7ACT2_ORYSJNo assigned EC number0.91511.00.9681nono
P07829ACT3_DICDINo assigned EC number0.8560.99450.9654yesno
Q964E1ACTC_BIOOBNo assigned EC number0.86050.98900.9601N/Ano
P53461ACTC_HALRONo assigned EC number0.86860.98900.9601N/Ano
P30168ACT6_SOLTUNo assigned EC number0.90451.00.9681N/Ano
O81221ACT_GOSHINo assigned EC number0.93631.00.9681N/Ano
P30167ACT3_SOLTUNo assigned EC number0.92041.00.9681N/Ano
P30164ACT1_PEANo assigned EC number0.91240.99720.9680N/Ano
P30165ACT2_PEANo assigned EC number0.90980.99720.9680N/Ano
P41113ACT3_PODCANo assigned EC number0.86200.99720.9680N/Ano
P46258ACT3_PEANo assigned EC number0.92831.00.9681N/Ano
Q05214ACT1_TOBACNo assigned EC number0.92831.00.9681N/Ano
P02578ACT1_ACACANo assigned EC number0.86590.98900.9626N/Ano
P23343ACT1_DAUCANo assigned EC number0.89410.99720.9578N/Ano
Q964D9ACTC_HELTINo assigned EC number0.86050.98900.9601N/Ano
P12716ACTC_PISOCNo assigned EC number0.86590.98900.9601N/Ano
P0C539ACT2_ORYSINo assigned EC number0.91511.00.9681N/Ano
P53504ACT1_SORBINo assigned EC number0.91511.00.9681N/Ano
Q10DV7ACT1_ORYSJNo assigned EC number0.93101.00.9681yesno
O65316ACT_MESVINo assigned EC number0.88321.00.9681N/Ano
P30172ACT12_SOLTUNo assigned EC number0.92150.94520.9663N/Ano
Q553U6ACT22_DICDINo assigned EC number0.86660.99450.9654yesno
Q96293ACT8_ARATHNo assigned EC number0.87531.00.9681nono
Q96292ACT2_ARATHNo assigned EC number0.87261.00.9681nono
Q964E3ACTC_BIOALNo assigned EC number0.86050.98900.9601N/Ano
O65315ACT_COLSCNo assigned EC number0.88591.00.9681N/Ano
Q93129ACTC_BRABENo assigned EC number0.85790.98900.9626N/Ano
P20904ACT_VOLCANo assigned EC number0.85671.00.9681N/Ano
P53471ACT2_SCHMANo assigned EC number0.85670.99720.9680N/Ano
P53498ACT_CHLRENo assigned EC number0.86471.00.9681N/Ano
P53494ACT4_ARATHNo assigned EC number0.92041.00.9681yesno
P53497ACT12_ARATHNo assigned EC number0.92301.00.9681yesno
P53496ACT11_ARATHNo assigned EC number0.92301.00.9681yesno
P30171ACT11_SOLTUNo assigned EC number0.93101.00.9681N/Ano
P30173ACT13_SOLTUNo assigned EC number0.92041.00.9681N/Ano
P53492ACT7_ARATHNo assigned EC number0.92571.00.9681yesno
Q54GX7ACT10_DICDINo assigned EC number0.87390.98900.9601yesno
Q10AZ4ACT3_ORYSJNo assigned EC number0.92831.00.9681yesno
A2XNS1ACT3_ORYSINo assigned EC number0.92831.00.9681N/Ano
P0C542ACT7_ORYSINo assigned EC number0.89270.98900.9601N/Ano
P0C540ACT7_ORYSJNo assigned EC number0.89270.98900.9601nono
A2XLF2ACT1_ORYSINo assigned EC number0.93101.00.9681N/Ano
P07830ACT1_DICDINo assigned EC number0.8720.99450.9654yesno
P02576ACTA_PHYPONo assigned EC number0.87930.98900.9601N/Ano
Q964E0ACTC_BIOTENo assigned EC number0.86050.98900.9601N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 0.0
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 0.0
pfam00022367 pfam00022, Actin, Actin 0.0
smart00268373 smart00268, ACTIN, Actin 0.0
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 1e-158
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 1e-156
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 1e-148
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 1e-104
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 6e-11
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information 
 Score =  694 bits (1792), Expect = 0.0
 Identities = 326/374 (87%), Positives = 350/374 (93%), Gaps = 12/374 (3%)

Query: 4   TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
            ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQSK
Sbjct: 3   GEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSK 62

Query: 64  RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQ 123
           RGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQ
Sbjct: 63  RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122

Query: 124 IMFETFNAPAMYVAIQAVLSLYA------------NGVSHTVPIYEGYALPHAILRLDLA 171
           IMFETFN PAMYVAIQAVLSLYA            +GVSHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLA 182

Query: 172 GRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 231
           GRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+E E++TA +SSA+EKSYE
Sbjct: 183 GRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE 242

Query: 232 LPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 291
           LPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLSG
Sbjct: 243 LPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSG 302

Query: 292 GSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSE 351
           G+TMFPGIADRM+KE++ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K E
Sbjct: 303 GTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEE 362

Query: 352 YDESGPSIVHRKCF 365
           YDESGPSIVHRKCF
Sbjct: 363 YDESGPSIVHRKCF 376

Length = 376
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
PTZ00452375 actin; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00004378 actin-2; Provisional 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.97
PRK13929335 rod-share determining protein MreBH; Provisional 99.96
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.94
PRK13928336 rod shape-determining protein Mbl; Provisional 99.93
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.82
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.53
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.39
CHL00094 621 dnaK heat shock protein 70 99.27
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.17
PLN03184 673 chloroplast Hsp70; Provisional 99.16
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.16
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 99.14
PRK01433 595 hscA chaperone protein HscA; Provisional 99.11
PRK13410 668 molecular chaperone DnaK; Provisional 99.11
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.09
PRK13411 653 molecular chaperone DnaK; Provisional 99.07
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.07
PRK05183 616 hscA chaperone protein HscA; Provisional 99.06
PTZ00009 653 heat shock 70 kDa protein; Provisional 99.06
PRK11678450 putative chaperone; Provisional 98.73
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 98.71
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 98.54
PRK09472420 ftsA cell division protein FtsA; Reviewed 98.51
PRK13917344 plasmid segregation protein ParM; Provisional 98.25
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 98.2
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 98.02
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 97.93
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 97.87
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 97.81
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 97.25
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 97.13
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 96.79
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 96.25
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 95.91
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 95.67
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 93.27
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 92.63
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 91.99
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 91.46
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 91.39
PRK13317277 pantothenate kinase; Provisional 90.92
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 90.83
PRK10719475 eutA reactivating factor for ethanolamine ammonia 88.33
COG4820277 EutJ Ethanolamine utilization protein, possible ch 88.13
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 82.6
>PTZ00452 actin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.5e-84  Score=608.30  Aligned_cols=359  Identities=55%  Similarity=1.016  Sum_probs=333.7

Q ss_pred             CCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCCccccCCCccccccchhhhccCcceeeccccCCccCCHHHHHH
Q 017851            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK   86 (365)
Q Consensus         7 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~~~   86 (365)
                      .++||||+||+++|+||||++.|+.++||++++|+......+...+++++|+++...+..+++++|+++|.|.|||.++.
T Consensus         5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~   84 (375)
T PTZ00452          5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI   84 (375)
T ss_pred             CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence            46899999999999999999999999999999987653222223457789999988888899999999999999999999


Q ss_pred             HHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhhhhhcC------------CceEEEE
Q 017851           87 IWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAN------------GVSHTVP  154 (365)
Q Consensus        87 ~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~a~~~~------------~~t~v~p  154 (365)
                      +|+|+|++.|.++|+++||+++|++++++..|++++|++||.|++|++++.++++|++|++            +.|+|+|
T Consensus        85 iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~P  164 (375)
T PTZ00452         85 IWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVP  164 (375)
T ss_pred             HHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEE
Confidence            9999998999999999999999999999999999999999999999999999999999997            5789999


Q ss_pred             eeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCCcccEEEcCC
Q 017851          155 IYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD  234 (365)
Q Consensus       155 V~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd  234 (365)
                      |+||+++.+++.++++||++++++|.++|.++++.+....+..++++||+++||++.+++++++.........+.|++||
T Consensus       165 V~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD  244 (375)
T PTZ00452        165 VFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD  244 (375)
T ss_pred             EECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC
Confidence            99999999999999999999999999999999888877667889999999999999998877664443334567899999


Q ss_pred             CcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHHHHHhhCCCC
Q 017851          235 GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS  314 (365)
Q Consensus       235 ~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~~~~  314 (365)
                      |+.|.++.+||.+||+||+|+.++.+..||+++|.++|.+||+|+|+.|++||+|+||+|++|||.+||++||++++|..
T Consensus       245 g~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~  324 (375)
T PTZ00452        245 GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQ  324 (375)
T ss_pred             CCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCccccccccC
Q 017851          315 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF  365 (365)
Q Consensus       315 ~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~~k~~  365 (365)
                      .+++|..+++|.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus       325 ~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        325 LKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             ceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence            899999999999999999999999999999999999999999999999997

>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>PRK13317 pantothenate kinase; Provisional Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 0.0
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 0.0
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 0.0
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 0.0
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 0.0
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 0.0
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 0.0
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 0.0
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 0.0
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 0.0
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 0.0
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 0.0
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 0.0
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 0.0
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 0.0
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 0.0
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 0.0
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 0.0
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 0.0
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 0.0
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 0.0
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 0.0
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 0.0
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 0.0
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 0.0
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 0.0
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 0.0
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 0.0
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 0.0
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 0.0
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 0.0
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 0.0
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 0.0
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 0.0
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 0.0
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 0.0
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 0.0
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 0.0
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 0.0
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 4e-96
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 9e-96
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 1e-56
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 3e-55
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 3e-20
4i6m_A477 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 9e-10
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 7e-07
4i6m_B439 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 3e-05
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/375 (87%), Positives = 351/375 (93%), Gaps = 12/375 (3%)
Query: 3   DTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNAPAMYVAIQAVLSLYA------------NGVSHTVPIYEGYALPHAILRLDL 170
           QIMFETFN PAMYVAIQAVLSLYA            +GVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 171 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 230
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+EQE+ TA +SSA+EKSY
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAASSSALEKSY 240
Query: 231 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 290
           ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 291 GGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKS 350
           GG+TMFPGIADRM+KE++ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 351 EYDESGPSIVHRKCF 365
           EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477 Back     alignment and structure
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure
>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 0.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 0.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 0.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 0.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 1e-146
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 1e-88
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
 Score =  722 bits (1865), Expect = 0.0
 Identities = 315/375 (84%), Positives = 341/375 (90%), Gaps = 12/375 (3%)

Query: 3   DTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60

Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120

Query: 123 QIMFETFNAPAMYVAIQAVLSLYANG------------VSHTVPIYEGYALPHAILRLDL 170
           QIMFETFN PAMYVAIQAVLSLYA+G            V+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180

Query: 171 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 230
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA +SS++EKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240

Query: 231 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 290
           ELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300

Query: 291 GGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKS 350
           GG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360

Query: 351 EYDESGPSIVHRKCF 365
           EYDE+GPSIVHRKCF
Sbjct: 361 EYDEAGPSIVHRKCF 375
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.97
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.77
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.77
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.7
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.68
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.58
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.4
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.39
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.24
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.2
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.13
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.12
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 99.08
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 98.88
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 98.61
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 98.57
3js6_A355 Uncharacterized PARM protein; partition, segregati 98.37
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 96.5
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 96.43
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 95.77
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 90.06
1hux_A270 Activator of (R)-2-hydroxyglutaryl-COA dehydratase 84.25
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=1.1e-80  Score=595.73  Aligned_cols=357  Identities=36%  Similarity=0.675  Sum_probs=309.2

Q ss_pred             CCCcEEEeCCCCcEEEeeeCCCCCCCCCCcceEeeCCCC----------------------ccccCCCccccccchhhhc
Q 017851            6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG----------------------VMVGMGQKDAYVGDEAQSK   63 (365)
Q Consensus         6 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~   63 (365)
                      +.++||||+||+++|+||||++.|+.+|||++++|++..                      ...+...+++++|+++...
T Consensus         4 ~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~~   83 (427)
T 3dwl_A            4 FNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKK   83 (427)
T ss_dssp             CCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHHT
T ss_pred             CCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhhC
Confidence            678999999999999999999999999999999987541                      1123445688999999888


Q ss_pred             cC-cceeeccccCCccCCHHHHHHHHHHhcccccccCCCCCceEEecCCCCCHHhHHHHHHHhhccCCCCceecccchhh
Q 017851           64 RG-ILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVL  142 (365)
Q Consensus        64 ~~-~~~~~~p~~~g~i~~~~~~~~~l~~~~~~~L~~~~~~~~vvl~e~~~~~~~~r~~l~~~lfe~l~~~~v~~~~~~~~  142 (365)
                      +. .+++++|+++|+|.|||.++++|+|+|++.|+++|.++||+++||+++++..|++++|++||.|++++++++.++++
T Consensus        84 ~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vl  163 (427)
T 3dwl_A           84 ASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVL  163 (427)
T ss_dssp             HHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHH
T ss_pred             cccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHH
Confidence            75 68899999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             hhhcC--------------------CceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHH
Q 017851          143 SLYAN--------------------GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDM  202 (365)
Q Consensus       143 a~~~~--------------------~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~i  202 (365)
                      |+|++                    |.|+|+||++|+++.++++++++||++++++|.++|++++..   ..+.+++++|
T Consensus       164 a~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~~~I  240 (427)
T 3dwl_A          164 ALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTAERI  240 (427)
T ss_dssp             HHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------CHHHHHH
T ss_pred             HHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHHHHH
Confidence            99973                    568999999999999999999999999999999999988776   3356899999


Q ss_pred             hhccceeeccHHHHHHHhccCCCcccEEEc--CCCc--EEeeCCcccccccccCCCccCCCC-CCChHHHHHHHHHhCCh
Q 017851          203 KEKLAYIALDYEQELETAKTSSAVEKSYEL--PDGQ--VITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDV  277 (365)
Q Consensus       203 k~~~~~v~~~~~~~~~~~~~~~~~~~~~~l--pd~~--~i~i~~~r~~~~E~LF~p~~~~~~-~~~l~~~I~~~i~~~~~  277 (365)
                      |+++|||+.+++++++.........+.|.+  |||+  .|.++.+||.+||+||+|++++.+ ..+|+++|.++|.+||+
T Consensus       241 Ke~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~  320 (427)
T 3dwl_A          241 KEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPI  320 (427)
T ss_dssp             HHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCH
T ss_pred             HHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCH
Confidence            999999999998887765443333566777  8887  889999999999999999999988 58999999999999999


Q ss_pred             hHHHhhhcccccccCccCccChHHHHHHHHHhhC--------------CCCceEEEECCCCCccceeehhhhhhcccccc
Q 017851          278 DIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA--------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQ  343 (365)
Q Consensus       278 d~r~~l~~nIvl~GG~s~i~g~~~RL~~el~~~~--------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~  343 (365)
                      |+|+.|++||+||||+|++|||.+||++||+.+.              |...+++|..+++|.+++|+|||++|++++|+
T Consensus       321 dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl~~f~  400 (427)
T 3dwl_A          321 DVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFG  400 (427)
T ss_dssp             HHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccccchh
Confidence            9999999999999999999999999999999987              45567999999999999999999999999999


Q ss_pred             cccccHhHHhhcCccccccccC
Q 017851          344 QMWIAKSEYDESGPSIVHRKCF  365 (365)
Q Consensus       344 ~~~itr~ey~e~G~~i~~~k~~  365 (365)
                      ++||||+||+|+|++|++||++
T Consensus       401 ~~witk~EYeE~G~~iv~~~~~  422 (427)
T 3dwl_A          401 SYCHTKADYEEYGASIARRYQI  422 (427)
T ss_dssp             HHSEEHHHHHHSCGGGGSCCCC
T ss_pred             heeEEHHHHhhhChHhheeccc
Confidence            9999999999999999999974
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 1e-107
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 4e-99
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9e-75
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 7e-74
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 7e-69
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  312 bits (799), Expect = e-107
 Identities = 181/214 (84%), Positives = 199/214 (92%)

Query: 148 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLA 207
           GV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL 
Sbjct: 12  GVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLC 71

Query: 208 YIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHET 267
           Y+ALD+E E+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS IGMESAGIHET
Sbjct: 72  YVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHET 131

Query: 268 TYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKY 327
           TYNSIMKCD+DIRKDLY N V+SGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKY
Sbjct: 132 TYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY 191

Query: 328 SVWIGGSILASLSTFQQMWIAKSEYDESGPSIVH 361
           SVWIGGSILASLSTFQQMWI K EYDE+GPSIVH
Sbjct: 192 SVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 225
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.98
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.98
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 98.65
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.37
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 97.95
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 97.87
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 97.13
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 96.87
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 96.75
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 96.43
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 95.21
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 89.94
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 88.05
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 87.2
d2hoea2169 N-acetylglucosamine kinase {Thermotoga maritima [T 82.93
d2ap1a1186 Putative regulator protein YcfX {Salmonella typhim 81.94
d2aa4a2170 N-acetylmannosamine kinase NanK {Escherichia coli 81.41
d1xc3a2176 Putative fructokinase YhdR {Bacillus subtilis [Tax 80.09
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.2e-50  Score=351.93  Aligned_cols=216  Identities=84%  Similarity=1.333  Sum_probs=205.5

Q ss_pred             cCCceEEEEeeCCeeCCCceEEecCcHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhhccceeeccHHHHHHHhccCCC
Q 017851          146 ANGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSA  225 (365)
Q Consensus       146 ~~~~t~v~pV~~g~~~~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~  225 (365)
                      |.+.|+|+||+||+++.++++++++||++++++|+++|.+++..+....+.+.++++|+.+|+++.++..+.........
T Consensus        10 G~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e~~~~~~~~~   89 (225)
T d2fxua2          10 GDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSS   89 (225)
T ss_dssp             CSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCST
T ss_pred             CCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHHHhhcccCcc
Confidence            44789999999999999999999999999999999999999998888778899999999999999998887777666666


Q ss_pred             cccEEEcCCCcEEeeCCcccccccccCCCccCCCCCCChHHHHHHHHHhCChhHHHhhhcccccccCccCccChHHHHHH
Q 017851          226 VEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSK  305 (365)
Q Consensus       226 ~~~~~~lpd~~~i~i~~~r~~~~E~LF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvl~GG~s~i~g~~~RL~~  305 (365)
                      ....|.+|||+.+.++.+|+.+||.||+|..++.+..+|+++|.++|.+||+|+|+.|++||+||||+|++|||.+||++
T Consensus        90 ~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~  169 (225)
T d2fxua2          90 LEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQK  169 (225)
T ss_dssp             TCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHH
T ss_pred             cceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccCCchhHHHHh
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCceEEEECCCCCccceeehhhhhhcccccccccccHhHHhhcCccccc
Q 017851          306 EISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVH  361 (365)
Q Consensus       306 el~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~i~~  361 (365)
                      ||+++.+...++++..+++|++++|+|||++|++++|+++||||+||+|+|++||+
T Consensus       170 El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         170 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             HHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             HHHHhhccccceEEecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            99999999889999999999999999999999999999999999999999999985
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure