Citrus Sinensis ID: 017852

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEAPVVEPPDLLVTS
cccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccc
cccccHHHHHHHHHHHcccccEEEEEEEcccHHHHHEEEEEcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcc
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATnhverpakEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRAlrevdptfHEEVINygrsrshmlnmahfkddsspnawdysAWVRSYALFLEERLECFRVLKydietdrprtkdldtaELLEHLPALQLLLFRVlgcqpqgaaVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSldigrgerfikieqppaSFLQAMEEYVkeaprgstfrkdqtvdnkvdapkeMMAIEykktpeveeakppsppppepvkveapvveppdllvts
MSGGGTQKSFRKalgalkdtttvslakvnsdykeLDIAIVKatnhverpakekHIRAVFAsisatrpraDVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLkydietdrprtkdlDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKeaprgstfrkdqtvdnkvdapkeMMAIEYKktpeveeakppsppppepvkveapvveppdllvts
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEllehlpalqlllFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKTpeveeakppsppppepvkveapvveppDLLVTS
***************ALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQ****F**************************************************************************
*************LGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDI*********LDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAME**************************************************************PDLLV**
*********FRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKT***************PVKVEAPVVEPPDLLVTS
*******KSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAP**************************************************************
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MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEAPVVEPPDLLVTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query365 2.2.26 [Sep-21-2011]
Q9LHS0 544 Putative clathrin assembl yes no 0.956 0.641 0.780 1e-160
Q9LVD8 591 Putative clathrin assembl no no 0.835 0.516 0.646 1e-119
Q8VYT2 601 Putative clathrin assembl no no 0.832 0.505 0.617 1e-116
Q8LBH2 571 Putative clathrin assembl no no 0.857 0.548 0.597 1e-115
P94017 692 Putative clathrin assembl no no 0.819 0.432 0.612 1e-112
Q9SA65 599 Putative clathrin assembl no no 0.915 0.557 0.356 3e-55
Q8GX47 611 Putative clathrin assembl no no 0.805 0.481 0.341 1e-49
Q9ZVN6 653 Clathrin coat assembly pr no no 0.794 0.444 0.328 3e-49
Q8S9J8 635 Probable clathrin assembl no no 0.797 0.458 0.310 2e-47
Q8LF20 653 Putative clathrin assembl no no 0.4 0.223 0.463 5e-34
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function desciption
 Score =  565 bits (1457), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/355 (78%), Positives = 313/355 (88%), Gaps = 6/355 (1%)

Query: 10  FRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRA 69
            R+ LGA+KDTTTVSLAKVNSDYKELDIAIVKATNHVERP+KE++IRA+F +ISATRPRA
Sbjct: 11  LRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIFMAISATRPRA 70

Query: 70  DVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHF 129
           DVAYCIHALA+RLS+THNWAVALKTLIVIHRALREVD TFHEEVINY RSRSHMLNM+HF
Sbjct: 71  DVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRSRSHMLNMSHF 130

Query: 130 KDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQL 189
           KDDS PNAW YSAWVR YALFLEERLECFRVLKYD+E D PRTKDLDT +LLE LPALQ 
Sbjct: 131 KDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPDLLEQLPALQE 190

Query: 190 LLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKA 249
           LLFRVL CQP+GAAV N +IQLALS+V SESTKIYQA++DG  NLVDKFF+MQR+DA+KA
Sbjct: 191 LLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQRNDAVKA 250

Query: 250 LDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFR 309
           LD+YRRA +QA RLSEF+EVCKS+++GRGERFIKIEQPP SFLQAMEEYVKEAP  +  +
Sbjct: 251 LDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYVKEAPLAAGVK 310

Query: 310 KDQTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEA--PVVEPPDLL 362
           K+Q V+ K+ APKE++AIEY+  P+V E KP S   PEPVK EA  PV + PDLL
Sbjct: 311 KEQVVE-KLTAPKEILAIEYEIPPKVVEEKPAS---PEPVKAEAEKPVEKQPDLL 361

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function description
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function description
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1 Back     alignment and function description
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
255582313 548 clathrin assembly protein, putative [Ric 0.917 0.611 0.901 1e-179
449465625 554 PREDICTED: putative clathrin assembly pr 0.912 0.601 0.903 1e-179
297739011 505 unnamed protein product [Vitis vinifera] 0.991 0.716 0.857 1e-179
357478253 545 hypothetical protein MTR_4g115420 [Medic 0.964 0.645 0.817 1e-178
359484228 555 PREDICTED: putative clathrin assembly pr 0.991 0.652 0.857 1e-178
356562967 548 PREDICTED: putative clathrin assembly pr 0.969 0.645 0.833 1e-174
356548512 546 PREDICTED: putative clathrin assembly pr 0.969 0.648 0.836 1e-173
388505726 548 unknown [Lotus japonicus] 0.915 0.609 0.833 1e-172
224087080 548 predicted protein [Populus trichocarpa] 0.983 0.655 0.849 1e-170
147854711 588 hypothetical protein VITISV_037564 [Viti 0.975 0.605 0.833 1e-170
>gi|255582313|ref|XP_002531947.1| clathrin assembly protein, putative [Ricinus communis] gi|223528393|gb|EEF30429.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 303/336 (90%), Positives = 323/336 (96%), Gaps = 1/336 (0%)

Query: 1   MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFA 60
           MSGGGTQKS RKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKE+HIRA+FA
Sbjct: 1   MSGGGTQKSIRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKERHIRAIFA 60

Query: 61  SISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSR 120
           +ISATRPRADVAYCIHALA+RLSKTHNWAVALKTLIVIHRALREVDPTFHEE+INYGRSR
Sbjct: 61  AISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFHEELINYGRSR 120

Query: 121 SHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEL 180
           +HMLNMAHFKDDSSPNAWDYSAWVR+YALFLEERLECFRVLKYDIETDRPRTKDLDTAEL
Sbjct: 121 NHMLNMAHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDIETDRPRTKDLDTAEL 180

Query: 181 LEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFE 240
           LEHLPALQ LLFRVLGCQPQGAAV+NFVIQLALSLVASES KIYQAI+DGT NLVDKFFE
Sbjct: 181 LEHLPALQQLLFRVLGCQPQGAAVNNFVIQLALSLVASESVKIYQAINDGTANLVDKFFE 240

Query: 241 MQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVK 300
           MQR DA++ALDIYRRA QQAERLSEFYE+CKS+DIGRGERFIKIEQPPASFLQ MEEYV+
Sbjct: 241 MQRPDAMRALDIYRRACQQAERLSEFYEICKSMDIGRGERFIKIEQPPASFLQTMEEYVR 300

Query: 301 EAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKTPEVE 336
           EAPR S  RK+Q V+NK+ APKE++AIEYKK PEV+
Sbjct: 301 EAPRMSV-RKEQVVENKITAPKEVLAIEYKKEPEVK 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449465625|ref|XP_004150528.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Cucumis sativus] gi|449526473|ref|XP_004170238.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297739011|emb|CBI28256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357478253|ref|XP_003609412.1| hypothetical protein MTR_4g115420 [Medicago truncatula] gi|355510467|gb|AES91609.1| hypothetical protein MTR_4g115420 [Medicago truncatula] Back     alignment and taxonomy information
>gi|359484228|ref|XP_002285448.2| PREDICTED: putative clathrin assembly protein At5g35200 isoform 1 [Vitis vinifera] gi|359484230|ref|XP_003633084.1| PREDICTED: putative clathrin assembly protein At5g35200 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356562967|ref|XP_003549739.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Glycine max] Back     alignment and taxonomy information
>gi|356548512|ref|XP_003542645.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Glycine max] Back     alignment and taxonomy information
>gi|388505726|gb|AFK40929.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224087080|ref|XP_002308057.1| predicted protein [Populus trichocarpa] gi|222854033|gb|EEE91580.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147854711|emb|CAN83852.1| hypothetical protein VITISV_037564 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
TAIR|locus:2182432 544 AT5G35200 [Arabidopsis thalian 0.895 0.601 0.771 3.3e-134
TAIR|locus:2165615 591 AT5G57200 [Arabidopsis thalian 0.871 0.538 0.6 2.3e-101
TAIR|locus:2120780 601 AT4G25940 [Arabidopsis thalian 0.446 0.271 0.707 4.6e-101
TAIR|locus:2049587 571 AT2G01600 [Arabidopsis thalian 0.819 0.523 0.602 2.5e-97
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.819 0.432 0.583 2.3e-94
TAIR|locus:2007524 599 AT1G03050 [Arabidopsis thalian 0.416 0.253 0.490 3.2e-50
TAIR|locus:2040115 653 AT2G25430 [Arabidopsis thalian 0.4 0.223 0.463 2.2e-49
TAIR|locus:2132382 611 AT4G02650 [Arabidopsis thalian 0.408 0.243 0.464 4e-47
TAIR|locus:505006543 635 AT4G32285 [Arabidopsis thalian 0.4 0.229 0.429 6.7e-47
TAIR|locus:2205558 653 AT1G05020 [Arabidopsis thalian 0.452 0.252 0.382 5.6e-44
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
 Identities = 253/328 (77%), Positives = 288/328 (87%)

Query:     3 GGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASI 62
             GGG+Q S R+ LGA+KDTTTVSLAKVNSDYKELDIAIVKATNHVERP+KE++IRA+F +I
Sbjct:     4 GGGSQSSLRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIFMAI 63

Query:    63 SATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSH 122
             SATRPRADVAYCIHALA+RLS+THNWAVALKTLIVIHRALREVD TFHEEVINY RSRSH
Sbjct:    64 SATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRSRSH 123

Query:   123 MLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEXXX 182
             MLNM+HFKDDS PNAW YSAWVR YALFLEERLECFRVLKYD+E D PRTKDLDT +   
Sbjct:   124 MLNMSHFKDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPDLLE 183

Query:   183 XXXXXXXXXFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQ 242
                      FRVL CQP+GAAV N +IQLALS+V SESTKIYQA++DG  NLVDKFF+MQ
Sbjct:   184 QLPALQELLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQ 243

Query:   243 RHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEA 302
             R+DA+KALD+YRRA +QA RLSEF+EVCKS+++GRGERFIKIEQPP SFLQAMEEYVKEA
Sbjct:   244 RNDAVKALDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYVKEA 303

Query:   303 PRGSTFRKDQTVDNKVDAPKEMMAIEYK 330
             P  +  +K+Q V+ K+ APKE++AIEY+
Sbjct:   304 PLAAGVKKEQVVE-KLTAPKEILAIEYE 330
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005545 "1-phosphatidylinositol binding" evidence=IEA
GO:0030118 "clathrin coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=IEA
GO:0048268 "clathrin coat assembly" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007524 AT1G03050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205558 AT1G05020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LHS0CAP10_ARATHNo assigned EC number0.78020.95610.6415yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
pfam07651278 pfam07651, ANTH, ANTH domain 1e-103
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 6e-38
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 4e-33
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information 
 Score =  304 bits (781), Expect = e-103
 Identities = 114/282 (40%), Positives = 166/282 (58%), Gaps = 16/282 (5%)

Query: 32  YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVA 91
             +L++A+VKAT+H E P K+KH+R +   +  T   A VA    AL++RL  T NW VA
Sbjct: 1   DSDLEVAVVKATSHDEVPPKKKHVREI---LVGTSSPAKVAALFWALSRRLPLTRNWVVA 57

Query: 92  LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL 151
           LK LI++H+ LRE  P+  +E++   R  S +L ++ F DDS    WDY A++R+YA +L
Sbjct: 58  LKALILVHKLLREGHPSVLQELLRARRRISSLLRISSF-DDSMSLTWDYGAFIRAYAKYL 116

Query: 152 EERLECFRVLKYDIETDRPRTK------------DLDTAELLEHLPALQLLLFRVLGCQP 199
           +ERL+  R L  D   +R                 +   +LL+ +P LQ LL  +L C+P
Sbjct: 117 DERLDFHRKLPRDPTFERVEYGSLRAVGDPNSRYTMSMEDLLDIIPKLQKLLDALLKCKP 176

Query: 200 QGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQ 259
            G A+ N  I  AL L+  ES  +Y AI++G +NL++KFFEM + DA  AL IY+R   Q
Sbjct: 177 TGNALTNECIIAALILLIKESFGLYGAINEGIINLLEKFFEMSKPDADAALGIYKRFVSQ 236

Query: 260 AERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301
            ERL EFYEVCK+L   R     K+   P + L A+EE++++
Sbjct: 237 FERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLDALEEHLRD 278

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
KOG0251 491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.98
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.96
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.44
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 99.21
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.18
KOG2056336 consensus Equilibrative nucleoside transporter pro 98.75
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.22
KOG2057 499 consensus Predicted equilibrative nucleoside trans 97.66
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 94.97
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 94.92
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 94.81
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 94.74
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 94.7
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 94.04
cd03561133 VHS VHS domain family; The VHS domain is present i 93.61
KOG2199 462 consensus Signal transducing adaptor protein STAM/ 81.06
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=7e-74  Score=580.21  Aligned_cols=291  Identities=47%  Similarity=0.806  Sum_probs=273.5

Q ss_pred             HHHhhhcccccchhhhccCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccCCChHHH
Q 017852           12 KALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVA   91 (365)
Q Consensus        12 ~~~g~lKd~~si~la~v~~~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t~~wiVa   91 (365)
                      +++|++||++|+|+|+|.+.++++++||+|||+|+++|||+|||+.|+.+|+..+  +++++|+++|.+|+++|+||+||
T Consensus         1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA   78 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA   78 (491)
T ss_pred             CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence            4789999999999999998889999999999999999999999999999999874  78999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCcccHHHHHHhhhcCcCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHhhhhccCCcccCCC-
Q 017852           92 LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP-  170 (365)
Q Consensus        92 ~K~LillHrlLreG~~~~~~e~l~~~~~r~~~l~l~~f~d~s~~~~~~~s~~Ir~Ya~YL~~Rl~~~~~~~~d~~~~~~-  170 (365)
                      +|+|||||+||++|+++|.+++.    ++++.|+|++|.|++++.+|+|++|||+|++||++|+.+|+.+++|++..+. 
T Consensus        79 lKsLIliH~ll~~G~~~f~~~l~----~~~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~  154 (491)
T KOG0251|consen   79 LKALILIHRLLKEGDPSFEQELL----SRNLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG  154 (491)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHH----hcccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence            99999999999999999987664    2447899999999998889999999999999999999999999999875532 


Q ss_pred             ----CCCCCC-hHHHHhhHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 017852          171 ----RTKDLD-TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHD  245 (365)
Q Consensus       171 ----~~~~l~-~~~lL~~l~~lQ~lid~ll~c~p~~~~~~N~li~~Al~llv~Ds~~LY~~i~~gii~LLe~fFem~~~d  245 (365)
                          ..+++. .+.+|+.++.||.||+++++|+|.+.+.+|.+|++||.+||+|||+||+++|+||+||||+||+|++.|
T Consensus       155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~  234 (491)
T KOG0251|consen  155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD  234 (491)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence                455565 678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccCCCCCChhhHHHHHHHHhhCCCCccc
Q 017852          246 ALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTF  308 (365)
Q Consensus       246 a~~al~iykrf~~q~~~L~~Fy~~ck~l~~~~~~~iP~L~~~P~~ll~~LEeyl~~~~~~~~~  308 (365)
                      |.++|+||+||.+|+++|.+||++||++|+.++.+||+|+++|.+++++|||||++.+....+
T Consensus       235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~  297 (491)
T KOG0251|consen  235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAK  297 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhccccccc
Confidence            999999999999999999999999999999999999999999999999999999999855444

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 4e-22
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 5e-22
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 3e-19
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 3e-19
1hx8_A299 Crystal Structure Of N-Terminal Domain Of Drosophil 1e-17
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 131/267 (49%), Gaps = 14/267 (5%)
Query: 38  AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
            + KAT H     K+KH+  +           ++     +L +R + + +W V  K+LI 
Sbjct: 25  TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLIT 81
Query: 98  IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
            H  +       +E  I Y  SR+ + N+++F D S    +D S ++R Y+ +L E+   
Sbjct: 82  THHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVS 137
Query: 158 FRVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLA 212
           +R + +D  T   R  D     ++T +              +L        + N VI  A
Sbjct: 138 YRQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAA 196
Query: 213 LSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKS 272
             L+  ++ +++ A ++G +NL++K+F+M+++   + LDIY++   +  R+SEF +V + 
Sbjct: 197 FMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQ 256
Query: 273 LDIGRGERFIKIEQPPASFLQAMEEYV 299
           + I RG+    + Q P+S L A+E+++
Sbjct: 257 VGIDRGD-IPDLSQAPSSLLDALEQHL 282
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180 Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 1e-88
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 3e-84
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 4e-84
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 2e-04
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  267 bits (682), Expect = 1e-88
 Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 15/280 (5%)

Query: 5   GTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISA 64
           G+      +  +L D  T +   V      +   + KAT H     K+KH+  +   I  
Sbjct: 1   GSPIGIHMSGQSLTDRITAAQHSVT--GSAVSKTVCKATTHEIMGPKKKHLDYL---IQC 55

Query: 65  T-RPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHM 123
           T     ++     +L +R + + +W V  K+LI  H  +   +  F    I Y  SR+ +
Sbjct: 56  TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHHLMVYGNERF----IQYLASRNTL 110

Query: 124 LNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP----RTKDLDTAE 179
            N+++F D S    +D S ++R Y+ +L E+   +R + +D    +       + ++T +
Sbjct: 111 FNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTEK 170

Query: 180 LLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFF 239
           LL+ +P +Q  +  +L        + N VI  A  L+  ++ +++ A ++G +NL++K+F
Sbjct: 171 LLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYF 230

Query: 240 EMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGE 279
           +M+++   + LDIY++   +  R+SEF +V + + I RG+
Sbjct: 231 DMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGD 270
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.59
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.57
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.37
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.33
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.56
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 95.31
3g2s_A149 C-terminal fragment of sortilin-related receptor; 95.23
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 95.19
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 94.95
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 94.85
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 94.46
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 94.44
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 94.43
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 93.33
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=4.2e-74  Score=555.49  Aligned_cols=277  Identities=24%  Similarity=0.434  Sum_probs=242.0

Q ss_pred             hhHHHHHHhhhc-ccccchhhhccCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhcCCCCCCcHHHHHHHHHhhhccC
Q 017852            7 QKSFRKALGALK-DTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKT   85 (365)
Q Consensus         7 ~~~~r~~~g~lK-d~~si~la~v~~~~~~l~~AV~KATs~~e~pPKeKHVr~Ii~~t~~~~p~~~~~~~~~~L~~RL~~t   85 (365)
                      +|+||+++|++| |+++          +++++||+|||+|+++|||+|||++||.+||+++  +++++++|+|.+|+ ++
T Consensus         5 ~~~~~~~~~a~k~~~~~----------~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R~-~~   71 (299)
T 1hx8_A            5 GQTINDRLLAARHSLAG----------QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIERS-QN   71 (299)
T ss_dssp             ---------------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHH-TC
T ss_pred             hHHHHHHHHHHhhccch----------hHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhhc-cC
Confidence            359999999999 8877          5677899999999999999999999999999874  67899999999995 79


Q ss_pred             CChHHHHHHHHHHHHHHHhCCcccHHHHHHhhhcCcCccccccccCCCC-----------CCCCchhHHHHHHHHHHHHH
Q 017852           86 HNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSS-----------PNAWDYSAWVRSYALFLEER  154 (365)
Q Consensus        86 ~~wiVa~K~LillHrlLreG~~~~~~e~l~~~~~r~~~l~l~~f~d~s~-----------~~~~~~s~~Ir~Ya~YL~~R  154 (365)
                      +||+|+||+||++|+|||||||+|.+++    ++++++|+|++|+|.++           +.+||||+|||+|++||++|
T Consensus        72 ~~w~va~K~LivlH~llreG~~~~~~~l----~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r  147 (299)
T 1hx8_A           72 ANWVVVYKSLITTHHLMAYGNERFMQYL----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEK  147 (299)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCHHHHHHH----HHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhcCCHHHHHHH----HhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence            9999999999999999999999986654    44678999999999764           34678999999999999999


Q ss_pred             HHhhhhccCCcccC-----CCCCCCCChHHHHhhHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 017852          155 LECFRVLKYDIETD-----RPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISD  229 (365)
Q Consensus       155 l~~~~~~~~d~~~~-----~~~~~~l~~~~lL~~l~~lQ~lid~ll~c~p~~~~~~N~li~~Al~llv~Ds~~LY~~i~~  229 (365)
                      +.+|+..++|++..     ..++++|+++++|++++.||+|||++++|+|.+.+.+|+|+++||++||+||++||+++|+
T Consensus       148 ~~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~  227 (299)
T 1hx8_A          148 SLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYND  227 (299)
T ss_dssp             HHHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            98889988888642     2378999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccCCCCCChhhHHHHHHHHhh
Q 017852          230 GTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE  301 (365)
Q Consensus       230 gii~LLe~fFem~~~da~~al~iykrf~~q~~~L~~Fy~~ck~l~~~~~~~iP~L~~~P~~ll~~LEeyl~~  301 (365)
                      ||+||||+||+|++.||++||+||+||.+|+++|++||++|+++|+++ ++||+|+++|++|+++|||||++
T Consensus       228 gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~  298 (299)
T 1hx8_A          228 GIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  298 (299)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999976 89999999999999999999986
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d1hx8a1133 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop 5e-55
d1hf8a1132 a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye 5e-55
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 8e-40
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 9e-40
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 1e-20
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  174 bits (444), Expect = 5e-55
 Identities = 36/130 (27%), Positives = 76/130 (58%), Gaps = 1/130 (0%)

Query: 170 PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISD 229
              + ++  +LL+ LP LQ  L  +L    Q   + N VI ++  L+  +  +++   +D
Sbjct: 2   GSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYND 61

Query: 230 GTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPA 289
           G +NL++K+F+M +  A  ALD+Y++   + +R+ EF +V +++ I +G+    + + P+
Sbjct: 62  GIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGD-IPDLTKAPS 120

Query: 290 SFLQAMEEYV 299
           S L A+E+++
Sbjct: 121 SLLDALEQHL 130
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.97
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.97
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.83
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 95.19
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.12
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 94.86
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 93.77
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 92.95
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=7e-39  Score=271.78  Aligned_cols=130  Identities=27%  Similarity=0.520  Sum_probs=127.2

Q ss_pred             CCCCCChHHHHhhHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 017852          171 RTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKAL  250 (365)
Q Consensus       171 ~~~~l~~~~lL~~l~~lQ~lid~ll~c~p~~~~~~N~li~~Al~llv~Ds~~LY~~i~~gii~LLe~fFem~~~da~~al  250 (365)
                      .+|+|++++||++++.+|+|++++++|+|.+++.+|.++++||.++++||++||+.+|+||+||||+||+|++.||++||
T Consensus         3 ~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al   82 (133)
T d1hx8a1           3 SLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDAL   82 (133)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccCccccCCCCCChhhHHHHHHHHhh
Q 017852          251 DIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE  301 (365)
Q Consensus       251 ~iykrf~~q~~~L~~Fy~~ck~l~~~~~~~iP~L~~~P~~ll~~LEeyl~~  301 (365)
                      +||+||.+|+++|.+||++||++|+++ .+||+|+++|++++++||||+++
T Consensus        83 ~iyk~~~~q~e~L~~f~~~ck~~g~~r-~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          83 DLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999987 69999999999999999999985
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure