Citrus Sinensis ID: 017874

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MSSPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISVT
Secondary Structure (PSIPRED)
cccccHHHccccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHcccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccEccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccEEccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mssplyaafclpsspylskfsryrvtccsgsqqkYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAaeddslishssvplpvdalisqlddlsvgycshyssgfrsspeSVLESIERYLFdkkgfrrtnarnqlieprsLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGlidfdveisfpldlyslprgyqkqkskdsdqphIITVQMLLEEILRNLKNafwpfqhdrsRSLFLRAARAANCidqlnsgdsgLQLASAKAARHRLErgvwnsvrfGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISVT
Flexible Loop (DISEMBL)
mssplyaaFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIkrlsnveretsiSINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYssgfrsspesvLESIERYLFdkkgfrrtnarnqlieprsLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQkqkskdsdqphIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRlergvwnsvrfGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISVT
Low Complexity Region (SEG)
MSSPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDrsrslflraaraaNCIDQLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISVT
Disordered region (IsUnstruct)
****LYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFR****SVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRG************HIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI***
Disordered Region (DISOPRED)
***PL***FCLPSSPYLSKFSRYRV************SDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERE**ISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN****
Disordered Region (DISEMBL)
MSSPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYS*********VLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPR***********QPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQ**********LERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISVT
Disordered Region (DISPRO)
**SPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
359494997	423	PREDICTED: uncharacterized protein LOC10	0.895	0.770	0.732	1e-137
296090330	423	unnamed protein product [Vitis vinifera]	0.895	0.770	0.732	1e-137
357456475	422	hypothetical protein MTR_3g014680 [Medic	0.942	0.812	0.650	1e-132
356510483	485	PREDICTED: uncharacterized protein LOC10	0.931	0.698	0.664	1e-128
255641242	422	unknown [Glycine max]	0.931	0.803	0.649	1e-125
255543955	470	conserved hypothetical protein [Ricinus	0.868	0.672	0.694	1e-120
224057294	426	predicted protein [Populus trichocarpa]	0.859	0.734	0.609	1e-113
224072891	423	predicted protein [Populus trichocarpa]	0.901	0.775	0.602	1e-108
255543985	355	conserved hypothetical protein [Ricinus	0.744	0.763	0.617	1e-95
224028949	420	unknown [Zea mays] gi|414876983|tpg|DAA5	0.887	0.769	0.565	1e-93

>gi|359494997|ref|XP_002265457.2| PREDICTED: uncharacterized protein LOC100249731 [Vitis vinifera]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/333 (73%), Positives = 279/333 (83%), Gaps = 7/333 (2%)

Query: 24  RVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISI 83
           RV C    + +Y + DLK  LH  LD++GTD   A+ AR+GF S+IKRLS++ERETSISI
Sbjct: 39  RVVC----RAQYASEDLKFVLHHALDALGTDIAHAKVARDGFCSEIKRLSDIERETSISI 94

Query: 84  NKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVL 143
           N+ VDLGKTAL+IAAEDDSLISHSSVPLPVDA I +LDDLS+ YCSHYSS FR+SPE   
Sbjct: 95  NRGVDLGKTALYIAAEDDSLISHSSVPLPVDAFIERLDDLSMDYCSHYSSAFRASPEIFF 154

Query: 144 ESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGL 203
           E++ERYL+  KGFRRTNA   L E R+LYLHSVLTHR+GSA MLSLIYSEILKMLR+WGL
Sbjct: 155 ETLERYLYINKGFRRTNA--NLSESRALYLHSVLTHRSGSAAMLSLIYSEILKMLRLWGL 212

Query: 204 IDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSR 263
           +DFDVEI FP D +SLPRGY KQKSK+SDQPHI+T Q L  E+LR+LK+AFWPFQHD +R
Sbjct: 213 LDFDVEIFFPHDSHSLPRGYHKQKSKESDQPHIMTSQSLFVEMLRSLKDAFWPFQHDNTR 272

Query: 264 SLFLRAARAANCIDQLN-SGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLI 322
           SLFLRAA AANCID+ N   +SG +LASAKAA+HRLERGVW SVRFGDMR AL+ACERLI
Sbjct: 273 SLFLRAAHAANCIDRSNIVTESGFELASAKAAQHRLERGVWTSVRFGDMRRALSACERLI 332

Query: 323 LLESDAKELRDYSILLYHCGLYEQSLQYLKFYQ 355
           LLE+D  ELRDYSILLYHCG YEQSLQYLK YQ
Sbjct: 333 LLETDLTELRDYSILLYHCGFYEQSLQYLKLYQ 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090330|emb|CBI40149.3| unnamed protein product [Vitis vinifera]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/333 (73%), Positives = 279/333 (83%), Gaps = 7/333 (2%)

Query: 24  RVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISI 83
           RV C    + +Y + DLK  LH  LD++GTD   A+ AR+GF S+IKRLS++ERETSISI
Sbjct: 42  RVVC----RAQYASEDLKFVLHHALDALGTDIAHAKVARDGFCSEIKRLSDIERETSISI 97

Query: 84  NKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVL 143
           N+ VDLGKTAL+IAAEDDSLISHSSVPLPVDA I +LDDLS+ YCSHYSS FR+SPE   
Sbjct: 98  NRGVDLGKTALYIAAEDDSLISHSSVPLPVDAFIERLDDLSMDYCSHYSSAFRASPEIFF 157

Query: 144 ESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGL 203
           E++ERYL+  KGFRRTNA   L E R+LYLHSVLTHR+GSA MLSLIYSEILKMLR+WGL
Sbjct: 158 ETLERYLYINKGFRRTNA--NLSESRALYLHSVLTHRSGSAAMLSLIYSEILKMLRLWGL 215

Query: 204 IDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSR 263
           +DFDVEI FP D +SLPRGY KQKSK+SDQPHI+T Q L  E+LR+LK+AFWPFQHD +R
Sbjct: 216 LDFDVEIFFPHDSHSLPRGYHKQKSKESDQPHIMTSQSLFVEMLRSLKDAFWPFQHDNTR 275

Query: 264 SLFLRAARAANCIDQLN-SGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLI 322
           SLFLRAA AANCID+ N   +SG +LASAKAA+HRLERGVW SVRFGDMR AL+ACERLI
Sbjct: 276 SLFLRAAHAANCIDRSNIVTESGFELASAKAAQHRLERGVWTSVRFGDMRRALSACERLI 335

Query: 323 LLESDAKELRDYSILLYHCGLYEQSLQYLKFYQ 355
           LLE+D  ELRDYSILLYHCG YEQSLQYLK YQ
Sbjct: 336 LLETDLTELRDYSILLYHCGFYEQSLQYLKLYQ 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456475|ref|XP_003598518.1| hypothetical protein MTR_3g014680 [Medicago truncatula] gi|355487566|gb|AES68769.1| hypothetical protein MTR_3g014680 [Medicago truncatula]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/358 (65%), Positives = 287/358 (80%), Gaps = 15/358 (4%)

Query: 11  LPSSPYLSKFSRY------------RVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFA 58
           LP++ + S FS++            RV C  GS  ++VA+DLK  LHD LD+ G DT  A
Sbjct: 9   LPTTSFFSTFSKFQFCPPSFSSSCPRVICHGGSNVQHVATDLKFFLHDALDASGIDTAHA 68

Query: 59  REAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALIS 118
           REAREGF SQIKRL+++E+ETSI IN+ VDLG+TAL+IAAEDDSL+SHSSVPLPVDA ++
Sbjct: 69  REAREGFCSQIKRLTDIEKETSICINRHVDLGRTALYIAAEDDSLVSHSSVPLPVDAFVA 128

Query: 119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLT 178
           +LDDLS+ YC HY+  + SSPE  LESIER+L+  KGFRRT+A   L+EP++LYLHSVLT
Sbjct: 129 RLDDLSMDYCPHYTPSYDSSPEKFLESIERFLYVHKGFRRTSA--NLLEPQALYLHSVLT 186

Query: 179 HRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIIT 238
           HR+GS  MLSLIYSEILKMLR+WGL+ FD EI +P D++++P+GY K KSK+SDQ HI+T
Sbjct: 187 HRSGSPAMLSLIYSEILKMLRLWGLLYFDAEIFYPHDIFNVPKGYHKLKSKESDQAHIMT 246

Query: 239 VQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN-SGDSGLQLASAKAARHR 297
              LL EIL NLK+AFWPF HD S++LFLRAA AANC+D+ +  G+SG Q+ASAKAARHR
Sbjct: 247 SGNLLVEILNNLKHAFWPFHHDHSKTLFLRAAHAANCVDRSDFVGESGSQIASAKAARHR 306

Query: 298 LERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQ 355
           L+RGVW +VRFGDMR +L+ACERLILL +D  ELRDYSILLYHCGLYE+SLQYL  YQ
Sbjct: 307 LDRGVWTTVRFGDMRRSLSACERLILLTNDPNELRDYSILLYHCGLYEESLQYLTKYQ 364

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510483|ref|XP_003523967.1| PREDICTED: uncharacterized protein LOC100807902 [Glycine max]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/346 (66%), Positives = 278/346 (80%), Gaps = 7/346 (2%)

Query: 15  PYLSKFSRYRVTCC----SGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIK 70
           P+L+  S  RV  C    + + Q++VA+DLK  LHD L + G DTT AREARE F SQI 
Sbjct: 85  PFLASSSSSRVVACHVGSNSNAQQHVATDLKFVLHDALHAYGIDTTHAREAREQFCSQIG 144

Query: 71  RLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSH 130
           R +++E+ETSI IN+CVDLG+TAL+IAAEDDSL+SHSSVPLPVD  I++LDDLS+ YC H
Sbjct: 145 RFTDIEKETSICINRCVDLGRTALYIAAEDDSLVSHSSVPLPVDDFITRLDDLSMDYCPH 204

Query: 131 YSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLI 190
           YS  + SSPE  LESIER+L+  KGFRR NA    +EPR+LYLHSVLTHR+GSA MLSLI
Sbjct: 205 YSPEYDSSPEKFLESIERFLYIHKGFRRANA--NALEPRALYLHSVLTHRSGSAAMLSLI 262

Query: 191 YSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNL 250
           YSEILKMLR+W L+ FD EI FP D  +LP GY KQKSK+SDQ HI+T   LL EIL +L
Sbjct: 263 YSEILKMLRLWSLLYFDAEIFFPHDALTLPTGYHKQKSKESDQAHIMTSGNLLVEILSDL 322

Query: 251 KNAFWPFQHDRSRSLFLRAARAANCIDQLN-SGDSGLQLASAKAARHRLERGVWNSVRFG 309
           K+AFWPFQHD +++LFLRAA AANC+D+ +  G+SG Q+ASAKAA+HRL+RGVW SVRFG
Sbjct: 323 KHAFWPFQHDHTKTLFLRAATAANCVDRSDFVGESGSQIASAKAAQHRLDRGVWTSVRFG 382

Query: 310 DMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQ 355
           DMR +L+ACERLILL++DA E RDYSILLYHCGLYEQSL+YL  Y+
Sbjct: 383 DMRRSLSACERLILLKNDANEFRDYSILLYHCGLYEQSLEYLTKYR 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641242|gb|ACU20898.1| unknown [Glycine max]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/351 (64%), Positives = 276/351 (78%), Gaps = 12/351 (3%)

Query: 9   FCLPSSPYLSKFSRYRVTCCSGSQ---QKYVASDLKLALHDVLDSIGTDTTFAREAREGF 65
           FC P  P+ S+     V C  GS    QK+VA+DLK  LHD L   G +TT AREARE F
Sbjct: 23  FCPP--PFPSRV----VACHVGSNSNVQKHVATDLKFVLHDALHDSGINTTHAREAREHF 76

Query: 66  YSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSV 125
            SQI+R +++E+ TSI IN+CVDLG+TAL+IAAEDDSL+SHSSVPLPVD  I++LDDLS+
Sbjct: 77  CSQIRRFTDIEKGTSICINRCVDLGRTALYIAAEDDSLVSHSSVPLPVDDFITRLDDLSM 136

Query: 126 GYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAV 185
            YC HYS  + SSPE  LESIER+L+  KGFRR NA   ++EPR+LYLHSVLTHR+GSA 
Sbjct: 137 DYCPHYSPKYDSSPEKFLESIERFLYIHKGFRRANA--NVLEPRALYLHSVLTHRSGSAA 194

Query: 186 MLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEE 245
           MLSLIYSE+LKM R+W L+ FD EI F  D  +LP GY KQKSK+SDQ HI+T   LL E
Sbjct: 195 MLSLIYSEVLKMPRLWSLLHFDAEIFFSRDALTLPTGYHKQKSKESDQAHIMTSGNLLVE 254

Query: 246 ILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN-SGDSGLQLASAKAARHRLERGVWN 304
           IL +LK+AFWPFQHD +++LFLRAA AANC+D+ +  G+SG Q+A AKAA+HRL+RGVW 
Sbjct: 255 ILNDLKHAFWPFQHDHTKTLFLRAATAANCVDRSDFVGESGSQIALAKAAQHRLDRGVWT 314

Query: 305 SVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQ 355
           S RFGDMR +L+ACERLILL++DA ELRDYSILLYHCGLYEQSL+YL  Y+
Sbjct: 315 SARFGDMRRSLSACERLILLKNDANELRDYSILLYHCGLYEQSLEYLTKYR 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543955|ref|XP_002513040.1| conserved hypothetical protein [Ricinus communis] gi|223548051|gb|EEF49543.1| conserved hypothetical protein [Ricinus communis]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/318 (69%), Positives = 261/318 (82%), Gaps = 2/318 (0%)

Query: 38  SDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIA 97
           +DLK  L D LDS G +T  AR++R+ F SQI++L+ +ER TSISIN+ VDL KTAL+IA
Sbjct: 66  NDLKFVLLDALDSSGINTAHARDSRKEFLSQIEKLTVIERGTSISINRRVDLAKTALYIA 125

Query: 98  AEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFR 157
           AEDDSLISHSSVPLPVD+ + +L DLS+G+CS YSS   SSP+  L+S+E YL+ KKGFR
Sbjct: 126 AEDDSLISHSSVPLPVDSFVDRLYDLSMGFCSAYSSSLLSSPDKFLDSLEDYLYVKKGFR 185

Query: 158 RTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLY 217
           R N   QL +PR+LYLHSVLTHRTGSA MLS+IYSEILK+LR+W L+DF+ EISFP D +
Sbjct: 186 RNNGGRQL-DPRALYLHSVLTHRTGSAAMLSVIYSEILKLLRMWSLLDFNCEISFPHDCH 244

Query: 218 SLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCID 277
            LP+GY KQKS +SDQ HI+T Q LLEEILRNLK  FWPFQ D S+S FLRAA AANCID
Sbjct: 245 GLPKGYHKQKSVESDQLHIMTTQTLLEEILRNLKETFWPFQQDYSKSSFLRAADAANCID 304

Query: 278 QLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSIL 337
           + ++  SG QLASAKAA+HRL+RGVW SV FGDMR AL+ACERLI+L+SD KELRDYSIL
Sbjct: 305 R-STEQSGYQLASAKAAQHRLDRGVWTSVLFGDMRRALSACERLIVLDSDTKELRDYSIL 363

Query: 338 LYHCGLYEQSLQYLKFYQ 355
           LYHCG YEQSLQYLK YQ
Sbjct: 364 LYHCGFYEQSLQYLKLYQ 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057294|ref|XP_002299205.1| predicted protein [Populus trichocarpa] gi|222846463|gb|EEE84010.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/361 (60%), Positives = 259/361 (71%), Gaps = 48/361 (13%)

Query: 24  RVTCCSGSQQKY-VASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSIS 82
           RV C  GSQ    V +D + ALHD LDS G +TT AREAR+ F SQIKRLS++ERE SIS
Sbjct: 34  RVVCRGGSQPPPPVTTDFQFALHDALDSSGINTTHAREARQNFMSQIKRLSSIEREISIS 93

Query: 83  INKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESV 142
           IN+ VDL KTAL+IAAEDDSLISHSSV LPVDA I +LDDLS+G+C++ SS  +SSPE +
Sbjct: 94  INRRVDLAKTALYIAAEDDSLISHSSVALPVDAFIERLDDLSMGFCTNNSSALKSSPEML 153

Query: 143 LESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWG 202
           L+S+E++L+ KK                     VLTHR+GSAVML+LIYSEILK LR+W 
Sbjct: 154 LDSLEKFLYVKK---------------------VLTHRSGSAVMLALIYSEILKTLRLWS 192

Query: 203 LIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRS 262
           L+DFD EI FP D + LPRGY KQKSK+SD  HI+T   LLE+ILRNLK AFWPFQHD +
Sbjct: 193 LLDFDCEIFFPHDNHGLPRGYHKQKSKESDHQHILTSLTLLEKILRNLKEAFWPFQHDHT 252

Query: 263 RSLFLRAARAANCIDQLNSGD-SGLQLASAKAARHRLERGVWNSVRFGDMRCAL------ 315
           +SLFL+AA AA+C+D   + + SG QLASAKAA+HRL+RGVW SV FGDMR AL      
Sbjct: 253 KSLFLQAAHAADCVDISKTFEGSGAQLASAKAAQHRLDRGVWTSVHFGDMRRALSVWLGG 312

Query: 316 -------------------AACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQA 356
                              AACERLILLESD KELRDYS+LLYHCG YEQSLQYLK YQ 
Sbjct: 313 CTLSLICWKKILVLALPGWAACERLILLESDPKELRDYSVLLYHCGFYEQSLQYLKLYQE 372

Query: 357 Q 357
           +
Sbjct: 373 K 373

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072891|ref|XP_002303930.1| predicted protein [Populus trichocarpa] gi|222841362|gb|EEE78909.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/337 (60%), Positives = 254/337 (75%), Gaps = 9/337 (2%)

Query: 24  RVTCCSGSQQ--KYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSI 81
           RV C  G  +    V  D K ALHD LDS G DTT AREAR+ F SQIK LS +ERE SI
Sbjct: 35  RVVCRGGGSELPPPVTPDFKFALHDALDSSGVDTTHAREARQNFMSQIKGLSRIEREVSI 94

Query: 82  SINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSG--FRSSP 139
           SIN+ VDL KTA++I+AED +L+S SS+ LPVD  I +L DL++ +C    SG   R+SP
Sbjct: 95  SINRRVDLAKTAIYISAEDFALMSQSSLALPVDPFIERLFDLTMEFCR---SGKVLRASP 151

Query: 140 ESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLR 199
           E++L+S+ ++L+ +K F+R+N  ++L EP  LYLH+VLT+++GSA ML+LIYSEILK+LR
Sbjct: 152 EALLDSLYKFLYVEKDFQRSNVISRL-EPHPLYLHAVLTYQSGSAYMLALIYSEILKVLR 210

Query: 200 IWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQH 259
            W L+DFD EI FP D Y LPRGY KQKS +SD PHI+TVQ LLEEIL+N+K AFWPF+H
Sbjct: 211 FWSLLDFDCEIFFPHDRYGLPRGYHKQKSAESDHPHILTVQTLLEEILKNVKEAFWPFRH 270

Query: 260 DRSRSLFLRAARAANCIDQLN-SGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAAC 318
           D+++SLFLRA  A  C D+ N   +SG QL SAK++  RL+RG   S+  GD+R AL+AC
Sbjct: 271 DQTKSLFLRAVHAVLCTDRSNVVEESGFQLESAKSSHRRLDRGTLTSLHLGDLRLALSAC 330

Query: 319 ERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQ 355
           ERLILLE D KELRDYS+LLYHCGLYEQSL YLK YQ
Sbjct: 331 ERLILLEFDPKELRDYSVLLYHCGLYEQSLHYLKLYQ 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543985|ref|XP_002513055.1| conserved hypothetical protein [Ricinus communis] gi|223548066|gb|EEF49558.1| conserved hypothetical protein [Ricinus communis]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 184/298 (61%), Positives = 219/298 (73%), Gaps = 27/298 (9%)

Query: 60  EAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQ 119
           +AR+GF ++I+ LS +ER  SISIN+CVDLG+TAL+IAAEDDSL+S SSVPLPVDA I  
Sbjct: 38  DARKGFLTEIENLSQIERAASISINRCVDLGRTALYIAAEDDSLVSRSSVPLPVDAFIKV 97

Query: 120 LDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTH 179
           LDDLS+GYCSHYS  FR SPES + S+E YL+ KK                     VL H
Sbjct: 98  LDDLSLGYCSHYSLSFRDSPESFINSLETYLYVKK---------------------VLMH 136

Query: 180 RTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITV 239
            +GSA +LSLIYSE+LKMLR+W L DFD EI FP +L++LPRGY KQKS +SDQ HI+  
Sbjct: 137 LSGSAALLSLIYSEVLKMLRLWDLFDFDYEIFFPHELHALPRGYDKQKSTESDQKHIMIT 196

Query: 240 QMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQ-LNSG-DSGLQLASAKAARHR 297
           Q LLEEILR+LK AFWPF  D S+SLFLR A AA+ ID+  N G +S  QLAS K A++R
Sbjct: 197 QTLLEEILRDLKEAFWPFPFDSSKSLFLRGAHAASYIDKSSNDGEESSFQLASIKTAQYR 256

Query: 298 LERGVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQ 355
                  +VRFGDMR ALAACERLILLESD KE RDYSILLYHCG YE+S ++LK Y+
Sbjct: 257 FA----TNVRFGDMRRALAACERLILLESDPKEFRDYSILLYHCGFYEESWKFLKLYE 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224028949|gb|ACN33550.1| unknown [Zea mays] gi|414876983|tpg|DAA54114.1| TPA: hypothetical protein ZEAMMB73_607929 [Zea mays]

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/343 (56%), Positives = 237/343 (69%), Gaps = 20/343 (5%)

Query: 27  CCSGSQQKYVASD--LKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISIN 84
           C +  +Q+  A+    +L LHD LDS+G  T  AR AREGF +Q+ RL+ V   +SI+I+
Sbjct: 31  CAAAVEQEGGAAGEAPRLVLHDSLDSVGVATAHARAAREGFVAQVGRLTRVSAGSSIAIS 90

Query: 85  KCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSS---PES 141
           +  DL + AL +AAEDDSL+SHSSVPLPVDA I++LDDLS G+C+     F  S   PE 
Sbjct: 91  RGPDLARAALCVAAEDDSLVSHSSVPLPVDAFIARLDDLSTGFCA--GGNFPPSGAPPEV 148

Query: 142 VLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW 201
             + + RYL+  KGFRRTN  + +   R +YLHSVLT R+GSA+ML+LIYSEILK +R +
Sbjct: 149 FFDYLNRYLYVHKGFRRTNGVSDV---RIMYLHSVLTCRSGSALMLALIYSEILKTVRTY 205

Query: 202 GLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDR 261
           GL+DFD EI FP DL SLPRGY KQKSK  D+PHI+T + LL E LR LK AFWPFQ D+
Sbjct: 206 GLLDFDAEIFFPNDLNSLPRGYDKQKSKLVDEPHIMTSKSLLVETLRTLKCAFWPFQSDQ 265

Query: 262 SRSLFLRAARAANCIDQLNSGD---------SGLQLASAKAARHRLERGVWNSVRFGDMR 312
           S SLFL A  AAN       GD         S +++A+AKAA+HRL RGVW + RFGDMR
Sbjct: 266 SSSLFLNAV-AANQRGPGTLGDNQARSYGNTSAIEMAAAKAAQHRLMRGVWTNARFGDMR 324

Query: 313 CALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQ 355
            ALAACERLILL  D  ELRDY+ LLYHCG YE  L YL  YQ
Sbjct: 325 RALAACERLILLHHDPHELRDYAALLYHCGYYEDCLHYLSLYQ 367

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:2134791	453	AT4G19160 [Arabidopsis thalian	0.153	0.123	0.423	5.4e-10

TAIR|locus:2134791 AT4G19160 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query:   142 VLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRI 200
             VLE++   LFD +GF+RT+     ++P + YLHSVL  R  +A ++S+IY E+ K L +
Sbjct:   200 VLEAVNTVLFDLRGFKRTSIT---LDPENSYLHSVLNCRCSTAFLISVIYIEVCKRLNV 255

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	364
pfam13369	154	pfam13369, Transglut_core2, Transglutaminase-like	7e-07
COG2912	269	COG2912, COG2912, Uncharacterized conserved protei	1e-04

>gnl|CDD|222080 pfam13369, Transglut_core2, Transglutaminase-like superfamily

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 136 RSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEIL 195
            + P   LE++ R L+ + GF          +P + YL  VL  R G  + L+++Y E+ 
Sbjct: 21  EADPLEKLEALNRLLYGELGFSG--NSEDYYDPDNSYLDKVLERRRGIPISLAILYLELA 78

Query: 196 KMLRIWGLIDFDVE-ISFP 213
           + L         +E ++FP
Sbjct: 79  RRL------GLPLEGVNFP 91

Length = 154

>gnl|CDD|225464 COG2912, COG2912, Uncharacterized conserved protein [Function unknown]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 24/141 (17%)

Query: 136 RSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEIL 195
               E  LE++ R  +   GF  +       +PR+LYL+ VL  R G  V L+++  EI 
Sbjct: 53  LLPQEEQLEALLRLFYGDWGF--SGDEEDYFDPRNLYLNQVLQRRQGIPVSLAVVLLEIA 110

Query: 196 KML---------------------RIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQP 234
           + L                         +  F+       +L    +G     ++   + 
Sbjct: 111 RRLDLPLYGVNFPTQLLLRAEVEDEPLLIDPFNGGTLSQHELQEWLKGTIGPSAELLPED 170

Query: 235 -HIITVQMLLEEILRNLKNAF 254
               + + +L  +LRNLK A 
Sbjct: 171 LKQASNREILSRLLRNLKAAL 191

Length = 269

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
PRK10941	269	hypothetical protein; Provisional	100.0
COG2912	269	Uncharacterized conserved protein [Function unknow	100.0
PF13369	152	Transglut_core2: Transglutaminase-like superfamily	99.91
PF13371	73	TPR_9: Tetratricopeptide repeat	98.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.53
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.28
PRK15359	144	type III secretion system chaperone protein SscB;	95.87
PF13512	142	TPR_18: Tetratricopeptide repeat	95.81
PRK11189	296	lipoprotein NlpI; Provisional	95.35
PRK15359	144	type III secretion system chaperone protein SscB;	95.3
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.17
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.35
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.34
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.25
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	93.88
PF13431	34	TPR_17: Tetratricopeptide repeat	93.72
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	93.3
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	93.2
PF13512	142	TPR_18: Tetratricopeptide repeat	92.94
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	92.84
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.84
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	92.69
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	92.48
TIGR02552	135	LcrH_SycD type III secretion low calcium response	92.36
PRK11189	296	lipoprotein NlpI; Provisional	92.18
PRK12370	553	invasion protein regulator; Provisional	91.66
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	91.63
PRK12370	553	invasion protein regulator; Provisional	91.41
PRK10370	198	formate-dependent nitrite reductase complex subuni	91.37
KOG0553	304	consensus TPR repeat-containing protein [General f	91.3
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	91.29
PF03704	146	BTAD: Bacterial transcriptional activator domain;	91.28
PRK10803	263	tol-pal system protein YbgF; Provisional	91.2
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	90.9
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.66
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	90.63
PF01841	113	Transglut_core: Transglutaminase-like superfamily;	90.63
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	90.28
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	90.11
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.86
KOG1126	638	consensus DNA-binding cell division cycle control	89.44
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	89.32
PRK10370	198	formate-dependent nitrite reductase complex subuni	89.26
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	89.08
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	88.71
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	88.71
PF13428	44	TPR_14: Tetratricopeptide repeat	88.41
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	88.41
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	88.05
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	87.84
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	87.66
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	87.64
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	87.6
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	86.02
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	85.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	85.81
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	85.69
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	85.32
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	85.23
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	84.27
PRK11906	458	transcriptional regulator; Provisional	84.24
PRK10803	263	tol-pal system protein YbgF; Provisional	84.21
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	84.08
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	83.97
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	83.52
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	83.43
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	83.11
PF13428	44	TPR_14: Tetratricopeptide repeat	83.11
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	83.03
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	82.95
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	82.48
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	82.36
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	82.3
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	81.93
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	81.55
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	80.61
PLN02789	320	farnesyltranstransferase	80.36
PRK11788	389	tetratricopeptide repeat protein; Provisional	80.15
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	80.03

>PRK10941 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-52  Score=402.22  Aligned_cols=217  Identities=19%  Similarity=0.180  Sum_probs=191.4

Q ss_pred             cCCCCcHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCccCCCC
Q 017874           83 INKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNAR  162 (364)
Q Consensus        83 ~~~~~dL~~aAL~IA~~~~p~~~~~~v~ldv~~~~~~Ld~La~ev~~~l~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~  162 (364)
                      ++++++|.+|||+||++.+|       ++|++++.++||+|+.+++..  ++...++.+++++||++||++|||+||++ 
T Consensus         8 ~~~~~~L~e~al~ia~~~~p-------dl~~~~~~~~L~~l~~~~~~~--l~~~~~~~~~l~~L~~~fy~~lgF~Gn~~-   77 (269)
T PRK10941          8 EFNKAPLCEGMILASQAIRR-------DFPSQDVYDELERLVSLAREE--ISQLLPQDEQLEKLIALFYGEWGFGGASG-   77 (269)
T ss_pred             cccCccHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHh--ccccCCHHHHHHHHHHHHHHHhCCCCCcc-
Confidence            48899999999999999999       999999999999999999988  78889999999999999999999999999 


Q ss_pred             CCcCCcccccHHHHHhhccCChHHHHHHHHHHHHHhCCc--cc--------------------cCCCCeeeccccccccc
Q 017874          163 NQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL--------------------IDFDVEISFPLDLYSLP  220 (364)
Q Consensus       163 ~~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylevArRLglp--Gv--------------------~~f~G~i~~p~d~~~l~  220 (364)
                       +||+|+|||||+||++|+|+|||||+||++||+|+|+|  ||                    ++|+|+++.+++|....
T Consensus        78 -~Y~~p~ns~L~~VL~~R~G~PisL~il~l~iA~~lglp~~gV~fPghfllr~~~~d~~~~~IDPf~G~~L~~~~l~~~L  156 (269)
T PRK10941         78 -VYRLSDALWLDKVLKTRQGSAVSLGAILLWIANRLDLPLMPVIFPTQLILRADWLDGEMWLINPFNGETLDEHTLEVWL  156 (269)
T ss_pred             -ccCCchhhHHHHHHHccCCCcHHHHHHHHHHHHHcCCCeeeeecCchheeeeecCCCceEEEeCCCCCCCCHHHHHHHH
Confidence             99999999999999999999999999999999999999  66                    22334444444443322


Q ss_pred             ccccCC-CCCCCCCCCCCChHHHHHHHHHHHHHhccccccccchhhHHHHHHHhhhhhhccCCCchhhhhhHHHhhhhhh
Q 017874          221 RGYQKQ-KSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLE  299 (364)
Q Consensus       221 ~~~~~~-~~~~~~~~~~~s~r~IL~RmL~NLK~~y~~~~~~~~~~l~l~a~~~a~~~~~~~~~~~~~~~~~~~~a~~rl~  299 (364)
                      +++.++ ....++.+.+++|++|+.|||+|||.+|++++                                         
T Consensus       157 ~~~~g~~~~l~~~~L~~a~~~~il~Rml~nLK~~~~~~~-----------------------------------------  195 (269)
T PRK10941        157 KGNISPSAELFNEDLDEADNIEVIRKLLDTLKAALMEEK-----------------------------------------  195 (269)
T ss_pred             HhhcCCcccCCHHHcCCCCHHHHHHHHHHHHHHHHHHcC-----------------------------------------
Confidence            333333 22344567889999999999999999997765                                         


Q ss_pred             hccccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          300 RGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       300 ~~~~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                                +|++||+|+||++.+.| ||+|+||||++|+|+||++.|+.||++|++++|+-
T Consensus       196 ----------~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        196 ----------QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             ----------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence                      99999999999999999 79999999999999999999999999999999974

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.6e-41  Score=318.14  Aligned_cols=214  Identities=25%  Similarity=0.315  Sum_probs=182.4

Q ss_pred             CCcHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCccCCCCCCc
Q 017874           86 CVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQL  165 (364)
Q Consensus        86 ~~dL~~aAL~IA~~~~p~~~~~~v~ldv~~~~~~Ld~La~ev~~~l~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~Y  165 (364)
                      ...+.++++++|+..+|       ++|......+++.+++.++++  ++....+++++++++++||++|||+||.+  .|
T Consensus        12 ~~~~~e~~l~~a~~~~~-------~~dp~~~~~~l~~lV~~a~~~--i~~~~~~~~~~~~l~~~fy~d~gF~~~~~--~y   80 (269)
T COG2912          12 EAPLKEGALLAAQAIRP-------DLDPARLLNELDRLVRLARKR--ISELLPQEEQLEALLRLFYGDWGFSGDEE--DY   80 (269)
T ss_pred             hccchhHHHHHHHHhCc-------CCCHHHHHHHHHHHHHHHHHH--hhhccChhhHHHHHHHHHHHHcCCCCCcc--cc
Confidence            34466779999999999       999999999999999999988  77778889999999999999999999999  99


Q ss_pred             CCcccccHHHHHhhccCChHHHHHHHHHHHHHhCCc--cc-------------------cCCCCeeeccccccccccccc
Q 017874          166 IEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL-------------------IDFDVEISFPLDLYSLPRGYQ  224 (364)
Q Consensus       166 ~dp~Ns~L~~VLe~R~GiPIsL~iIylevArRLglp--Gv-------------------~~f~G~i~~p~d~~~l~~~~~  224 (364)
                      ++|+|+|+++|+++|+|+||+||+||+++|+++|+|  ||                   ++|+|++...++++....+.+
T Consensus        81 ~~~~n~~l~~Vl~~R~G~pvsLa~vll~ia~~l~lpl~gV~FP~~flLR~~~~~~~~~idP~ng~~l~~~~l~~~l~~~~  160 (269)
T COG2912          81 FDPRNLYLNQVLQRRQGIPVSLAVVLLEIARRLDLPLYGVNFPTQLLLRAEVEDEPLLIDPFNGGTLSQHELQEWLKGTI  160 (269)
T ss_pred             cCchhhhHHHHHHHcCCCcchHHHHHHHHHHHcCCCCCccCCccceeEeeccCCCceeeCCCCCCcccHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999  65                   123333333333332112222


Q ss_pred             CCC-CCCCCCCCCCChHHHHHHHHHHHHHhccccccccchhhHHHHHHHhhhhhhccCCCchhhhhhHHHhhhhhhhccc
Q 017874          225 KQK-SKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVW  303 (364)
Q Consensus       225 ~~~-~~~~~~~~~~s~r~IL~RmL~NLK~~y~~~~~~~~~~l~l~a~~~a~~~~~~~~~~~~~~~~~~~~a~~rl~~~~~  303 (364)
                      .+. ......+...++++|+.||++|||.+|+.++                                             
T Consensus       161 ~~~ael~~~~L~~a~~~~il~rll~~lk~~~~~e~---------------------------------------------  195 (269)
T COG2912         161 GPSAELLPEDLKQASNREILSRLLRNLKAALLREL---------------------------------------------  195 (269)
T ss_pred             CcHhhhhhhhhhhccHHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence            221 1223345567999999999999999997765                                             


Q ss_pred             cccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          304 NSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       304 ~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                            +|++|+++++|++.++| ||+|+||||++|+|+||++.|++||++|++++|+-
T Consensus       196 ------~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         196 ------QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             ------chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence                  99999999999999999 89999999999999999999999999999999984

>PF13369 Transglut_core2: Transglutaminase-like superfamily

Probab=99.91  E-value=1.2e-24  Score=192.29  Aligned_cols=130  Identities=23%  Similarity=0.389  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCccCCCCCCcCCcccccHHHHHhhccCChHHHHHHHHHH
Q 017874          115 ALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEI  194 (364)
Q Consensus       115 ~~~~~Ld~La~ev~~~l~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylev  194 (364)
                      ++.++||+||.++++.  ++...+|.+++++|+++||+++||+|+..  +|++|+|++|++||++|+|+||+||+||++|
T Consensus         2 ~~~~~Ld~la~~v~~~--~~~~~~~~~~l~al~~~l~~~~gF~~~~~--~y~~~~n~~l~~vL~~r~G~Pi~L~ily~~v   77 (152)
T PF13369_consen    2 AVLQRLDALAAQVRQR--LPARASPREKLEALNDVLYQELGFSGNSE--NYYDPENSFLHKVLERRRGIPISLAILYLEV   77 (152)
T ss_pred             hHHHHHHHHHHHHHHH--ccccCCHHHHHHHHHHHHHHHcCCCCCcc--ccCChHhhhHHHHHhcCCCCcHHHHHHHHHH
Confidence            5789999999999998  77888999999999999999999999999  9999999999999999999999999999999


Q ss_pred             HHHhCCc-cccCCCCeeec-----------ccc-ccccc--------ccccCCCCCCCCCCCCCChHHHHHHHHH
Q 017874          195 LKMLRIW-GLIDFDVEISF-----------PLD-LYSLP--------RGYQKQKSKDSDQPHIITVQMLLEEILR  248 (364)
Q Consensus       195 ArRLglp-Gv~~f~G~i~~-----------p~d-~~~l~--------~~~~~~~~~~~~~~~~~s~r~IL~RmL~  248 (364)
                      |+|+|++ -...|+|+++.           |.+ |..+.        .....+....+..+.++++++|+.||+|
T Consensus        78 a~rlGl~~~~v~~Pgh~l~r~~~~~~~~iDpf~~G~~l~~~~l~~~l~~~~~~~~~~~~~l~p~s~~eil~R~l~  152 (152)
T PF13369_consen   78 ARRLGLPAEPVNFPGHFLVRVRSDGEFYIDPFNGGRLLSREELERLLSRMGGPAELDPEYLKPASPREILLRMLR  152 (152)
T ss_pred             HHHcCCeEEEEecCCEEEEEEecCCcEEEccCCCCccCCHHHHHHHHHhccCcccCCHHHhCCCCHHHHHHHHhC
Confidence            9999999 33345555544           233 21121        1111111112234567899999999985

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.55  E-value=1.6e-07  Score=71.27  Aligned_cols=55  Identities=24%  Similarity=0.213  Sum_probs=51.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.++|+.|+.++|+++.++| ++..++++|.+++++|+|++|+.+|+.+++..|+.
T Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            45699999999999999999 68899999999999999999999999999999975

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.53  E-value=0.00027  Score=52.44  Aligned_cols=55  Identities=24%  Similarity=0.281  Sum_probs=50.3

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.+.++...|+ +.-+..+|.++++.|++.+|+..++.+++..|++
T Consensus         9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            567999999999999999995 7799999999999999999999999999999986

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.75  E-value=0.0028  Score=47.29  Aligned_cols=53  Identities=19%  Similarity=0.218  Sum_probs=48.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcC-ChHHHHHHHHHHHHHhc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCG-LYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg-~~~~A~~dL~~fl~~~~  359 (364)
                      ..|+++.|+.+.++.+.++| ++.-+--+|.++.++| .+.+|+++++..++.-|
T Consensus        15 ~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   15 QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46799999999999999999 5778999999999999 79999999999998766

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.28  E-value=0.0068  Score=44.90  Aligned_cols=54  Identities=15%  Similarity=0.131  Sum_probs=49.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+...+.++..+| ++.-+..+|.+|++.|++++|..-|+..+...|+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            46799999999999999999 5778889999999999999999999999988887

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.87  E-value=0.023  Score=49.36  Aligned_cols=56  Identities=9%  Similarity=0.069  Sum_probs=51.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++.+.++| ++.-+--+|.++.++|++.+|+..+...++..|+.+
T Consensus        70 ~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359         70 MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            57899999999999999999 688899999999999999999999999999998763

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.81  E-value=0.023  Score=50.07  Aligned_cols=56  Identities=20%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-C---hHHHHHHhHHHHHcCC---------------hHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-D---AKELRDYSILLYHCGL---------------YEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-d---p~e~RDrGlLl~~lg~---------------~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..++++.|+++.||.+.|+| +   ++-.--+||.+++.+.               ...|..+|+.++.++|||.
T Consensus        59 ~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   59 KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            57799999999999999999 6   4688999999999988               9999999999999999985

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.35  E-value=0.045  Score=53.12  Aligned_cols=55  Identities=22%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++.-+.-+|.++++.|++++|+++++.+++..|+.
T Consensus       110 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        110 QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            67899999999999999999 46788999999999999999999999999998875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.30  E-value=0.047  Score=47.41  Aligned_cols=57  Identities=9%  Similarity=0.002  Sum_probs=52.1

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ...|+++.|+.++++++.++| ++.-+..+|.++...|++++|...++.-++..|+.+
T Consensus        35 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~   92 (144)
T PRK15359         35 WQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP   92 (144)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            357899999999999999999 577899999999999999999999999999888754

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.17  E-value=0.047  Score=54.66  Aligned_cols=56  Identities=18%  Similarity=0.087  Sum_probs=51.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+..+++++.++| ++.-+.-+|.+|+++|+|++|+..++..++..|+..
T Consensus        48 ~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  104 (356)
T PLN03088         48 KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS  104 (356)
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            56899999999999999999 577788899999999999999999999999988753

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.35  E-value=0.098  Score=52.40  Aligned_cols=56  Identities=13%  Similarity=0.022  Sum_probs=51.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.+..+.++| ++..+..+|.+|.++|++.+|+.+++.-++..|+..
T Consensus        14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~   70 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA   70 (356)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence            56799999999999999999 577899999999999999999999999999988753

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.34  E-value=0.053  Score=34.22  Aligned_cols=30  Identities=13%  Similarity=0.347  Sum_probs=28.0

Q ss_pred             HHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          332 RDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       332 RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      --.|.+++..|.+.+|+..++.+++.+|+|
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            457999999999999999999999999997

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.25  E-value=0.13  Score=37.24  Aligned_cols=53  Identities=23%  Similarity=0.318  Sum_probs=35.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      ..++++.|+.+.++.+.+.| ++..+...|.++...|++..|...++..++..|
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          46 KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            44667777777777777776 455666777777777777777777666665554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.04  E-value=0.16  Score=42.27  Aligned_cols=56  Identities=16%  Similarity=0.069  Sum_probs=50.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|++..|+.+.++.+.++| ++.-+.-+|.++.+.|+++.|+..++..++..|+..
T Consensus        63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            56799999999999999999 577888899999999999999999999999988764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=93.88  E-value=0.19  Score=40.24  Aligned_cols=58  Identities=16%  Similarity=0.044  Sum_probs=51.3

Q ss_pred             cCcCCHHHHHHHHHHHhccCCC----hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874          306 VRFGDMRCALAACERLILLESD----AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV  363 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~Pd----p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~  363 (364)
                      ...|+++.|+...+.++...|+    +.-+--.|.++.+.|.+.+|...++..++..|++..
T Consensus        50 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        50 YAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            3678999999999999999984    345788899999999999999999999999998753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.72  E-value=0.059  Score=35.63  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=29.2

Q ss_pred             HHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHH
Q 017874          317 ACERLILLES-DAKELRDYSILLYHCGLYEQSLQ  349 (364)
Q Consensus       317 a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~  349 (364)
                      ++++.|.++| ++.-+.-+|.+|...|++++|.+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3678899999 67899999999999999999963

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=93.30  E-value=0.34  Score=38.75  Aligned_cols=57  Identities=12%  Similarity=0.110  Sum_probs=50.3

Q ss_pred             cCcCCHHHHHHHHHHHhccCCC-h---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          306 VRFGDMRCALAACERLILLESD-A---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~Pd-p---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      .+.|+++.|+..++.++...|+ +   .....+|.++++.|.+..|...++.++...|++.
T Consensus        13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795        13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence            3568999999999999999984 3   3577899999999999999999999999998863

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=93.20  E-value=0.21  Score=36.16  Aligned_cols=54  Identities=22%  Similarity=0.263  Sum_probs=48.4

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .|+++.|+...+..+.+.| ++..+..+|.++.+.|.++.|...++..++..|..
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189          13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            4699999999999999999 56788999999999999999999999988877654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.94  E-value=0.26  Score=43.52  Aligned_cols=57  Identities=16%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChH---HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          306 VRFGDMRCALAACERLILLES-DAK---ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +..|+|..|....|.|..--| .++   -..+.|..||..|.|.+|+..++.|++..|+|.
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            467899999999999999999 554   689999999999999999999999999999984

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=92.84  E-value=0.32  Score=46.25  Aligned_cols=57  Identities=11%  Similarity=-0.074  Sum_probs=51.1

Q ss_pred             cCcCCHHHHHHHHHHHhccCCC-hH---HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          306 VRFGDMRCALAACERLILLESD-AK---ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~Pd-p~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +..|++..|....+.++...|+ ++   ..-+.|.++++.+.|.+|+..++.|++..|++.
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence            3578999999999999999994 44   347999999999999999999999999999984

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.84  E-value=0.3  Score=30.92  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          329 KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       329 ~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .-+..+|.+++++|+|.+|+..++..++..|+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            457789999999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=92.69  E-value=0.28  Score=50.84  Aligned_cols=51  Identities=14%  Similarity=0.048  Sum_probs=46.4

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hH---HHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLESD-AK---ELRDYSILLYHCGLYEQSLQYLKFYQAQ  357 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~  357 (364)
                      ..|+++.|+.++++.|.++|+ +.   .+.-+|.+|.++|++++|+++|+..++.
T Consensus        87 ~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         87 SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            357999999999999999995 43   4999999999999999999999999986

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=92.48  E-value=0.27  Score=47.39  Aligned_cols=58  Identities=14%  Similarity=0.102  Sum_probs=53.4

Q ss_pred             ccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          305 SVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       305 ~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      .++.|++..|+....++..+.| |+..+=+.|..|-++|++.+|...+..-++..||..
T Consensus       110 ~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p  168 (257)
T COG5010         110 QIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP  168 (257)
T ss_pred             HHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence            3589999999999999999999 677899999999999999999999999999988764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=92.36  E-value=0.32  Score=40.44  Aligned_cols=56  Identities=13%  Similarity=0.029  Sum_probs=50.6

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +..|+++.|+...+.++.++| ++..+.-+|.++++.|++.+|...++..++..|+.
T Consensus        28 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552        28 YQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            456799999999999999999 67889999999999999999999999998887764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=92.18  E-value=0.39  Score=46.58  Aligned_cols=56  Identities=13%  Similarity=0.071  Sum_probs=51.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +.|+++.|+...++.+.++| ++..+--+|.++.+.|++++|...++.-++..|+..
T Consensus        76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            46799999999999999999 578899999999999999999999999999988754

>PRK12370 invasion protein regulator; Provisional

Probab=91.66  E-value=0.41  Score=50.62  Aligned_cols=54  Identities=17%  Similarity=0.065  Sum_probs=35.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.++.+.|++++|+..++.-++..|+
T Consensus       350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~  404 (553)
T PRK12370        350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT  404 (553)
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            45566666666666666666 3455566666666666666666666666666665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=91.63  E-value=0.57  Score=42.94  Aligned_cols=56  Identities=18%  Similarity=0.124  Sum_probs=50.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChH---HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAK---ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...++++.+.| ++.   .+-..|.+++..|.+++|+..++.+++..|++.
T Consensus        45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            56799999999999999999 453   568899999999999999999999999999865

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK12370 invasion protein regulator; Provisional

Probab=91.41  E-value=0.41  Score=50.61  Aligned_cols=56  Identities=11%  Similarity=-0.068  Sum_probs=51.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..++++.|+.+.++.+.++| ++.-+.-+|.++...|++++|...++.-++..|+++
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  372 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA  372 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            56789999999999999999 677888999999999999999999999999999864

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=91.37  E-value=0.58  Score=42.96  Aligned_cols=50  Identities=8%  Similarity=0.017  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          311 MRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       311 ~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      .+.|..+.++.+.++| ++.-+-..|+.+++.|+|++|+..++..++..|+
T Consensus       126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            6999999999999999 6788999999999999999999999999998886

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.30  E-value=0.29  Score=48.06  Aligned_cols=65  Identities=17%  Similarity=0.093  Sum_probs=50.0

Q ss_pred             hHHHhhhhhhhccccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          290 SAKAARHRLERGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       290 ~~~~a~~rl~~~~~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .+|.-+++.+       ..++|+.|+...+..|.|+| ++.-.=-|+-.|.++|.|..|++|.+..+..-|++
T Consensus        83 ~LK~eGN~~m-------~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y  148 (304)
T KOG0553|consen   83 SLKNEGNKLM-------KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY  148 (304)
T ss_pred             HHHHHHHHHH-------HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH
Confidence            5555556521       35688888888888888888 77777778888888888888888888888776654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=91.29  E-value=0.59  Score=42.83  Aligned_cols=57  Identities=19%  Similarity=0.226  Sum_probs=47.1

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          306 VRFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +..|++..|+...+.++.-.| .+   ...-..|..++..|.|..|...++.|++..|+|.
T Consensus        16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~   76 (203)
T PF13525_consen   16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP   76 (203)
T ss_dssp             HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            357899999999999999999 44   3688999999999999999999999999999985

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=91.28  E-value=1.4  Score=37.65  Aligned_cols=53  Identities=23%  Similarity=0.249  Sum_probs=45.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      ..|+++.|+..+++++.++| |...++-.=.+|+..|++.+|+.-++.|...+.
T Consensus        74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            56799999999999999999 677899999999999999999999999877654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=91.20  E-value=0.6  Score=45.09  Aligned_cols=55  Identities=5%  Similarity=-0.025  Sum_probs=29.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++...| +|   .-+.-.|.++..+|.+..|...++..++.+|++
T Consensus       192 ~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        192 NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44555555555555555555 22   234445555555555555555555555555554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.90  E-value=0.91  Score=46.30  Aligned_cols=56  Identities=14%  Similarity=0.224  Sum_probs=50.0

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.-+++..|+..|++.|.++| +...+--||..+..+|.|+.|+.||+.-++.-|+.
T Consensus       268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence            345599999999999999999 56777779999999999999999999999988864

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.66  E-value=0.55  Score=45.23  Aligned_cols=59  Identities=17%  Similarity=0.227  Sum_probs=53.7

Q ss_pred             cccCcCCHHHHHHHHHHHhccCC-ChH---HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          304 NSVRFGDMRCALAACERLILLES-DAK---ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       304 ~~lr~~d~~~AL~a~ErLllL~P-dp~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +.++.|+|..|..-.|.+..-.| .|+   -.-|.+..+|+.+.|.+|+..++.|+.++|+|-
T Consensus        43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~  105 (254)
T COG4105          43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP  105 (254)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence            45689999999999999999999 665   578999999999999999999999999999873

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=90.63  E-value=0.88  Score=39.74  Aligned_cols=54  Identities=24%  Similarity=0.404  Sum_probs=42.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|....++.+...| ++..+...|.++++.|.+++|...++.+++..|+
T Consensus       147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  201 (234)
T TIGR02521       147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ  201 (234)
T ss_pred             HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            45688888888888888888 4666778888888888888888888888776443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i

Probab=90.63  E-value=0.045  Score=44.54  Aligned_cols=63  Identities=14%  Similarity=0.172  Sum_probs=48.2

Q ss_pred             CCCCCHHHHHHHHHHHhhhhcCCccCCCCCCcCCcccccHHHHHhhccCChHHHHHHHHHHHHHhCCc
Q 017874          134 GFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW  201 (364)
Q Consensus       134 ~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylevArRLglp  201 (364)
                      ....++.+++++|.+++-+...|. +    .+..+.......+|.++.|.+...+.++..++|.+|||
T Consensus         9 ~~~~~~~~~~~~i~~~v~~~~~y~-~----~~~~~~~~~~~~~l~~~~G~C~~~a~l~~allr~~Gip   71 (113)
T PF01841_consen    9 ANSKTPLEKAKAIYDWVRSNIRYD-D----PNYSPGPRDASEVLRSGRGDCEDYASLFVALLRALGIP   71 (113)
T ss_dssp             TTSHCHHCCCCCCCCCCCCCCCEC------TCCCCCCTTHHHHHHCEEESHHHHHHHHHHHHHHHT--
T ss_pred             CCCCCHHHHHHHHHHHHHhCcEEe-C----CCCCCCCCCHHHHHHcCCCccHHHHHHHHHHHhhCCCc
Confidence            345677777888877777777766 1    33445555599999999999999999999999999999

e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=90.28  E-value=0.42  Score=37.06  Aligned_cols=45  Identities=22%  Similarity=0.427  Sum_probs=24.4

Q ss_pred             CCHHHHHHHHHHHhccCC-Ch--HHHHHHhHHHHHcCChHHHHHHHHH
Q 017874          309 GDMRCALAACERLILLES-DA--KELRDYSILLYHCGLYEQSLQYLKF  353 (364)
Q Consensus       309 ~d~~~AL~a~ErLllL~P-dp--~e~RDrGlLl~~lg~~~~A~~dL~~  353 (364)
                      |+++.|+...|+++...| ++  .-+.-.|.+|++.|.|+.|+..++.
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            456666666666666666 31  1233356666666666666655544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=90.11  E-value=0.99  Score=39.39  Aligned_cols=50  Identities=24%  Similarity=0.422  Sum_probs=35.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA  356 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~  356 (364)
                      ..|+++.|+...++.+.+.| ++..+...|.++.+.|.+++|...++..++
T Consensus        77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  127 (234)
T TIGR02521        77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE  127 (234)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            56677777777777777777 455666677777777777777777766665

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.86  E-value=0.88  Score=29.00  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=26.9

Q ss_pred             HHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          330 ELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       330 e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      .+-.+|.+++++|.+++|+.+++.-++..|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4567899999999999999999999998886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=89.44  E-value=0.68  Score=49.65  Aligned_cols=56  Identities=21%  Similarity=0.185  Sum_probs=52.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +-|+.+.||...|+.+.++| +|.-+-.+|.+++-+++|.+|++.||.-.+..|+-+
T Consensus       535 ~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es  591 (638)
T KOG1126|consen  535 QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQES  591 (638)
T ss_pred             HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH
Confidence            67899999999999999999 899999999999999999999999999999888644

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=89.32  E-value=0.33  Score=37.70  Aligned_cols=47  Identities=17%  Similarity=0.212  Sum_probs=39.2

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFY  354 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~f  354 (364)
                      +.|++++|+.++++ +..+|. +....-.|..++++|.|++|+.-|+.+
T Consensus        37 ~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   37 QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            56799999999999 777774 467778899999999999999998754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=89.26  E-value=1.1  Score=41.21  Aligned_cols=56  Identities=20%  Similarity=0.130  Sum_probs=48.1

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHH-HHHcCC--hHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSIL-LYHCGL--YEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlL-l~~lg~--~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++.+.+.| ++..+-.+|.+ +++.|.  +++|.+-|+..++.-|+..
T Consensus        85 ~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~  144 (198)
T PRK10370         85 WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV  144 (198)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence            78899999999999999999 57788888986 478788  5999999999999988753

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=89.08  E-value=0.92  Score=48.32  Aligned_cols=55  Identities=15%  Similarity=0.136  Sum_probs=29.5

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++|+ ..-+-.+|.+++++|.+++|+..++..++..|+.
T Consensus       411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            345555555555555555553 3344455555555555555555555555555543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=88.71  E-value=0.99  Score=43.75  Aligned_cols=52  Identities=19%  Similarity=0.357  Sum_probs=29.9

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      .|+++.|...+++.+.++| ++.-..-.|.++++.|++++|.+.++..++..|
T Consensus       127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            3455666666666666666 344555556666666666666666555555444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=88.71  E-value=1.4  Score=38.64  Aligned_cols=54  Identities=19%  Similarity=0.083  Sum_probs=44.5

Q ss_pred             CcCCHHHHHHHHHHHhccCCCh----HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLESDA----KELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pdp----~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+...++.+.+.|++    ..+...|.++.+.|++++|...++..+...|.
T Consensus        47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3468999999999998887742    36788999999999999999999888876554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=88.41  E-value=1.1  Score=30.76  Aligned_cols=30  Identities=10%  Similarity=-0.085  Sum_probs=14.4

Q ss_pred             HHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          331 LRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       331 ~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      +..+|..|.++|++++|.+.|+..++..|+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~   33 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPD   33 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            334444444455555555555444444444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=88.41  E-value=2.5  Score=31.89  Aligned_cols=51  Identities=25%  Similarity=0.395  Sum_probs=39.8

Q ss_pred             cCCHHHHHHHHHHHhccC---C-C-h---HHHHHHhHHHHHcCChHHHHHHHHHHHHHh
Q 017874          308 FGDMRCALAACERLILLE---S-D-A---KELRDYSILLYHCGLYEQSLQYLKFYQAQW  358 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~---P-d-p---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~  358 (364)
                      .|++++|+...++.+.+.   + + +   .-....|.++..+|++++|++.++..++..
T Consensus        18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            459999999888887553   2 2 3   258899999999999999999998877653

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=88.05  E-value=1.5  Score=38.72  Aligned_cols=55  Identities=22%  Similarity=0.183  Sum_probs=43.6

Q ss_pred             CcCCHHHHHHHHHHHhccCCCh----HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESDA----KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pdp----~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.+..+.+.|++    ..+...|.++.++|.+++|+..++.-++..|+.
T Consensus        47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            5678888888888888877642    367888888888899988888888887776653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=87.84  E-value=1.1  Score=51.54  Aligned_cols=55  Identities=15%  Similarity=-0.011  Sum_probs=51.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| +++.+..+|.+|.+.|++++|...++..++..|+.
T Consensus       473 ~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~  528 (1157)
T PRK11447        473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND  528 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            57999999999999999999 58899999999999999999999999999888865

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=87.66  E-value=0.97  Score=49.52  Aligned_cols=56  Identities=9%  Similarity=-0.122  Sum_probs=37.0

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +.|.++.|+...++++.++|| ...+.+++.++.+.+++++|+...+..++.-|+++
T Consensus        98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~  154 (694)
T PRK15179         98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA  154 (694)
T ss_pred             HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence            556666666666666666664 44666666666666666666666666666666654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=87.64  E-value=1.4  Score=46.99  Aligned_cols=54  Identities=17%  Similarity=0.083  Sum_probs=29.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.+..+.++| ++..+.-+|.+++..|++++|+.+++..++..|+
T Consensus       377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~  431 (615)
T TIGR00990       377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD  431 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence            34455555555555555555 3444555555555555555555555555555443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=87.60  E-value=1.2  Score=50.75  Aligned_cols=56  Identities=14%  Similarity=0.070  Sum_probs=42.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|+++.++|++++|+..++.-++.-|+.+
T Consensus       655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence            46777778788888887777 566777778888888888888887777777777664

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=86.02  E-value=1.8  Score=46.86  Aligned_cols=54  Identities=9%  Similarity=-0.117  Sum_probs=30.1

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.++++.+.++|+ +..+..+|.++.+.|++++|+..+...+...|+
T Consensus       122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~  176 (656)
T PRK15174        122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP  176 (656)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence            445555555555555555552 445555555555555555555555555555544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=85.87  E-value=1.6  Score=50.20  Aligned_cols=56  Identities=13%  Similarity=0.019  Sum_probs=52.3

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +..|+++.|+...++.+.++| ++..+...|.++++.|++++|+..++..++..|+.
T Consensus       280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~  336 (1157)
T PRK11447        280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS  336 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            468999999999999999999 68889999999999999999999999999998865

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=85.81  E-value=1.6  Score=48.13  Aligned_cols=57  Identities=12%  Similarity=-0.138  Sum_probs=49.2

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874          307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV  363 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~  363 (364)
                      ..|+++.|+.++++.+.++|| +..+..+|+++..+|.|++|.+.++..++..|+.+.
T Consensus       405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            677899999999999999994 678889999999999999999999999998888653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=85.69  E-value=1.7  Score=49.55  Aligned_cols=53  Identities=13%  Similarity=0.006  Sum_probs=30.4

Q ss_pred             CCHHHHHHHHHHHhccCCChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          309 GDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       309 ~d~~~AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      |+++.|+.+.++.+.++|++..+..+|.++.++|++++|...|+.-++..|+.
T Consensus       590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~  642 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN  642 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            55555555555555555554455555555555555555555555555555543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=85.32  E-value=2.7  Score=37.71  Aligned_cols=52  Identities=12%  Similarity=-0.033  Sum_probs=45.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHh
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQW  358 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~  358 (364)
                      ..|+++.|+.+.++.+.|+| ||.-.--.|..+..+|....|.+.++.-+..+
T Consensus        81 ~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         81 AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            46799999999999999999 67788889999999999999999988888776

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=85.23  E-value=0.7  Score=44.08  Aligned_cols=54  Identities=20%  Similarity=0.222  Sum_probs=49.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|++..|+.+-+-.+.|+| -.|..+.||+-+|.-|+|+.|.+|+..|-..-|+
T Consensus       111 ~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~  165 (297)
T COG4785         111 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN  165 (297)
T ss_pred             hcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence            68999999999999999999 5889999999999999999999999988765554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=84.27  E-value=2.3  Score=46.91  Aligned_cols=55  Identities=15%  Similarity=0.076  Sum_probs=42.4

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +..|+++.|+..++.++...| ++. +..+|.++.+.|.+.+|+..++..++..|+.
T Consensus        94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~  149 (765)
T PRK10049         94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT  149 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            367788888888888888887 456 7777888888888888888888888777764

>PRK11906 transcriptional regulator; Provisional

Probab=84.24  E-value=1.9  Score=44.85  Aligned_cols=56  Identities=14%  Similarity=-0.002  Sum_probs=38.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      .+.+...|++..+|.+.++| ||....-.|+++.+.|.+..|...|+.-....||++
T Consensus       316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A  372 (458)
T PRK11906        316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA  372 (458)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH
Confidence            56666677777777777777 666666677777777777777777777777777664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=84.21  E-value=3.1  Score=40.18  Aligned_cols=55  Identities=11%  Similarity=0.041  Sum_probs=50.8

Q ss_pred             cCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          308 FGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      .|+++.|+.+.+..+...| ++   ..+--.|.+|+..|.|.+|+..++.+++.+|++.
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~  214 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP  214 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            4699999999999999999 54   5789999999999999999999999999999975

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=84.08  E-value=2.4  Score=45.98  Aligned_cols=54  Identities=15%  Similarity=0.089  Sum_probs=26.6

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+...++++...|+ +....-.|.++.+.|++++|+..++..++..|+
T Consensus       330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            345555555555555555552 222223355555555555555555555555443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=83.97  E-value=2.4  Score=45.13  Aligned_cols=54  Identities=13%  Similarity=0.090  Sum_probs=44.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+...++.+...| ++..+.-+|.++.+.|+|++|...|+..++.-|+
T Consensus        34 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~   88 (899)
T TIGR02917        34 QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP   88 (899)
T ss_pred             HcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            46788888888888888888 5777888888888888888888888888776665

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR00540 hemY_coli hemY protein

Probab=83.52  E-value=2.2  Score=43.23  Aligned_cols=52  Identities=8%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQ  357 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~  357 (364)
                      +..|+++.|+...++++...| ++.-.+-.|.++.+.|+|++|.+.|+.+.+.
T Consensus       164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            368999999999999999999 6888999999999999999999999998876

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=83.43  E-value=2.9  Score=42.32  Aligned_cols=56  Identities=13%  Similarity=-0.010  Sum_probs=43.3

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-Ch--HHHHHHhHHHHHcCChHHHHHHHH--HHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLILLES-DA--KELRDYSILLYHCGLYEQSLQYLK--FYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp--~e~RDrGlLl~~lg~~~~A~~dL~--~fl~~~~~~  361 (364)
                      +.+++...++..+|+.+...| ||  ..+.-+|.++++.|+|++|.+.|+  .-.+..|+.
T Consensus       310 l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~  370 (409)
T TIGR00540       310 LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA  370 (409)
T ss_pred             cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence            346778888888998888888 57  666778999999999999988888  454555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=83.11  E-value=2.5  Score=46.45  Aligned_cols=54  Identities=19%  Similarity=0.017  Sum_probs=34.7

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      +.++++.|+..+|+++..+|+ +...--+|+++.++|.|++|...++.-+++.|+
T Consensus       132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence            455666666666666666664 446666666666666666666666666665554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=83.11  E-value=1.3  Score=30.42  Aligned_cols=30  Identities=23%  Similarity=0.296  Sum_probs=25.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhH
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSI  336 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGl  336 (364)
                      +.|++++|..+.++.+.++| |+..|+-.|.
T Consensus        13 ~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen   13 RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            57899999999999999999 5767766553

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=83.03  E-value=3.4  Score=41.79  Aligned_cols=57  Identities=9%  Similarity=-0.007  Sum_probs=48.0

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +..++.+.++..+|..+.-.| ||..+.-.|.++.+.|.|+.|...|+.-++.-|+..
T Consensus       305 l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~  362 (398)
T PRK10747        305 LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY  362 (398)
T ss_pred             ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence            355888899999999999999 577788899999999999999999998888877653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=82.95  E-value=1.6  Score=32.06  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=31.8

Q ss_pred             hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          328 AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       328 p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +..+..+|..+++.|+|.+|+..++.-++..|+.+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~   37 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA   37 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            56789999999999999999999999999988753

...

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=82.48  E-value=1.7  Score=41.16  Aligned_cols=59  Identities=24%  Similarity=0.319  Sum_probs=45.2

Q ss_pred             cccccCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          302 VWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       302 ~~~~lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      +|..+..|+...+..+++.+..-.| ||..+--.|.++.++|++++|+..++..+...|+
T Consensus       187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence            4666678888888888888777776 6777777888888888888888888888887775

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=82.36  E-value=4  Score=35.98  Aligned_cols=54  Identities=17%  Similarity=0.217  Sum_probs=44.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCC--------------hHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGL--------------YEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~--------------~~~A~~dL~~fl~~~~~  360 (364)
                      +.|+++.|+.+.+..+.+.| ++..+..+|.++.+.|.              +..|++.++..++.-|+
T Consensus        84 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603         84 SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence            67899999999999999999 56788899999999987              56677777766666554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=82.30  E-value=3.6  Score=43.76  Aligned_cols=53  Identities=23%  Similarity=0.297  Sum_probs=25.5

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      .|+++.|+.+.++.+.++| ++..+..+|.++.+.|++++|.+.++..++..|+
T Consensus       206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~  259 (899)
T TIGR02917       206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN  259 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3445555555555555554 3444444455555555555555544444444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=81.93  E-value=2.8  Score=38.31  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChH---HHHHHhHHHHHc--------CChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAK---ELRDYSILLYHC--------GLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~---e~RDrGlLl~~l--------g~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...+.++...| ++.   -+--.|.++++.        |.++.|+..++.+++..|++.
T Consensus        82 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302        82 KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            56899999999999999999 443   466789999987        889999999999999999874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=81.55  E-value=4.3  Score=36.49  Aligned_cols=56  Identities=4%  Similarity=-0.107  Sum_probs=51.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|....+.+..++| +..-|--.|+++..+|.|++|+...+.-+..-||..
T Consensus        47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            57899999999999999999 567899999999999999999999999888888764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.61  E-value=4.5  Score=43.85  Aligned_cols=62  Identities=13%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             cccccc--CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          301 GVWNSV--RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       301 ~~~~~l--r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      |++..+  .+|+.+.|+.+.+|.|.+.|+ |...-..|..+-..|...+|++.....+..+|+++
T Consensus       290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha  354 (966)
T KOG4626|consen  290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA  354 (966)
T ss_pred             cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence            445555  899999999999999999996 77888899999999999999999999999999986

>PLN02789 farnesyltranstransferase

Probab=80.36  E-value=3.9  Score=40.63  Aligned_cols=50  Identities=14%  Similarity=-0.011  Sum_probs=21.7

Q ss_pred             CHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcC-ChHHHHHHHHHHHHHhc
Q 017874          310 DMRCALAACERLILLESD-AKELRDYSILLYHCG-LYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       310 d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg-~~~~A~~dL~~fl~~~~  359 (364)
                      ..++||..++.++.++|+ ..-|--||.++..+| .+++|+..++.-++..|
T Consensus        52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np  103 (320)
T PLN02789         52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP  103 (320)
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence            344444444444444442 223444444444444 34444444444444333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=80.15  E-value=4.2  Score=39.82  Aligned_cols=55  Identities=18%  Similarity=0.035  Sum_probs=45.4

Q ss_pred             CcCCHHHHHHHHHHHhccCCChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++.+.|++....-.|.++.+.|.+++|...|+..++..|+.
T Consensus       261 ~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~  315 (389)
T PRK11788        261 ALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL  315 (389)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence            5678899999999988888865544778888888999999999998888887765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=80.03  E-value=1.8  Score=40.94  Aligned_cols=50  Identities=22%  Similarity=0.232  Sum_probs=26.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA  356 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~  356 (364)
                      .-|+.+.|+...++++..+| ||.-+.-+|-++.+.|++++|++-.....+
T Consensus       226 ~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  226 QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            66788888888888888888 677788888888888888888776655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	364
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 2e-09
 Identities = 55/355 (15%), Positives = 119/355 (33%), Gaps = 87/355 (24%)

Query: 62  REGFYSQIKR-LSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQL 120
           R   Y ++++ L  +    ++ I+  +  GKT + +                   +  ++
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS------------YKVQCKM 180

Query: 121 DD----LSVGYCSHYSSGFRSSPESVLESIER--YLFDKKGFRRTNARNQL---IEPRSL 171
           D     L++  C+        SPE+VLE +++  Y  D     R++  + +   I     
Sbjct: 181 DFKIFWLNLKNCN--------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 172 YLHSVLTHRTGSAVMLSL--IYS-EIL-------KML---RIWGLIDF-DVEISFPLDLY 217
            L  +L  +     +L L  + + +         K+L   R   + DF     +  + L 
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 218 SLPRGYQKQKSKD----------SDQPHIITVQM---------LLEEILRNLKNAFWPFQ 258
                    + K            D P     ++         ++ E +R+    +  ++
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 259 H---DRSRSLFLRAARAANCIDQLNSGDSG---LQLA----SAKAARHRLERGVWNSVRF 308
           H   D+  ++        + ++ L   +      +L+    SA      L   +W  V  
Sbjct: 349 HVNCDKLTTII------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-IWFDVIK 401

Query: 309 GDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQA--QWYNI 361
            D+   +    +  L+E   KE    SI   +  L  +       +++    YNI
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.9
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.85
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.85
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.8
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.77
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.72
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.7
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.69
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.62
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.56
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.54
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.52
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.52
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.49
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.44
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.41
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.35
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.35
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.35
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.23
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.17
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.08
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.07
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.01
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.0
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.97
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	95.97
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.91
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.77
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.76
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	95.74
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.66
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.66
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.61
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.47
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	95.46
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.44
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.39
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.38
3k9i_A	117	BH0479 protein; putative protein binding protein,	95.35
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	95.35
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	95.34
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.32
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	95.26
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	95.07
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	95.07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.05
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.01
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.01
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	94.97
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.95
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	94.93
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.9
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	94.89
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.8
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	94.36
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	94.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	94.24
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	94.21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	94.12
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	94.07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	94.05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	93.98
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	93.92
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	93.84
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	93.83
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	93.81
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	93.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	93.61
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	93.61
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	93.55
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	93.54
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	93.52
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	93.43
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.41
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	93.35
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	93.23
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	93.1
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	93.0
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	92.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	92.94
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	92.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	92.9
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	92.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	92.83
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	92.75
2gw1_A	514	Mitochondrial precursor proteins import receptor;	92.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	92.67
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	92.6
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	92.52
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	92.46
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	92.4
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	92.26
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	92.2
3u4t_A	272	TPR repeat-containing protein; structural genomics	92.13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	92.13
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	91.93
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	91.91
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	91.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	91.8
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	91.75
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	91.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	91.6
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	91.59
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	91.59
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	91.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	91.56
3u4t_A	272	TPR repeat-containing protein; structural genomics	91.49
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	91.39
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	91.36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	91.17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	91.04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	90.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	90.82
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	90.8
2gw1_A	514	Mitochondrial precursor proteins import receptor;	90.37
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	90.33
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	89.98
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	89.93
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	89.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	89.81
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	89.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	89.05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	88.4
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	87.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	86.89
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	86.76
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	86.4
3isr_A	293	Transglutaminase-like enzymes, putative cysteine;	86.37
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	86.15
3kd4_A	506	Putative protease; structural genomics, joint cent	85.91
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	85.73
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	84.68
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	84.41
1pc2_A	152	Mitochondria fission protein; unknown function; NM	84.24
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	83.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	83.48
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	83.44
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	83.09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	83.07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	82.42
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	81.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	81.55
2l6j_A	111	TPR repeat-containing protein associated with HSP;	81.38
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	81.24
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	81.11
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	81.01
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	80.88

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.0018  Score=49.25  Aligned_cols=55  Identities=18%  Similarity=0.175  Sum_probs=51.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.++| ++..+..+|.+++++|+|++|+..++..++..|+.
T Consensus        16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            57899999999999999999 67889999999999999999999999999988875

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.85  E-value=0.0017  Score=52.67  Aligned_cols=55  Identities=9%  Similarity=0.101  Sum_probs=51.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|.+|+++|+|++|+.+++..++..|+.
T Consensus        20 ~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A           20 KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            57899999999999999999 57789999999999999999999999999988765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.85  E-value=0.0028  Score=47.85  Aligned_cols=56  Identities=16%  Similarity=0.100  Sum_probs=51.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChH-HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAK-ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~-e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...++++.++| ++. .+..+|.++++.|++++|+..++..++..|+..
T Consensus        12 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A           12 NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            45799999999999999999 678 899999999999999999999999999998764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.80  E-value=0.0036  Score=51.91  Aligned_cols=55  Identities=15%  Similarity=0.092  Sum_probs=50.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+..+++.+.++| ++.-+.-+|.+|+++|+|++|+.+++..++..|+.
T Consensus        75 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A           75 NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence            45699999999999999999 57788999999999999999999999999999875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.77  E-value=0.0029  Score=51.43  Aligned_cols=55  Identities=15%  Similarity=0.050  Sum_probs=45.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+..+++.+.++| ++.-+.-+|.++.++|++++|+.+++..++.-|+.
T Consensus        59 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           59 KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence            67888888888888888888 46678888888888888888888888888888765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.75  E-value=0.0024  Score=54.33  Aligned_cols=56  Identities=5%  Similarity=-0.119  Sum_probs=51.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.+|.++|++++|+..++..++..|++.
T Consensus        82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            67899999999999999999 688899999999999999999999999999988764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.72  E-value=0.0032  Score=53.59  Aligned_cols=56  Identities=11%  Similarity=-0.022  Sum_probs=52.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++++.++| ++.-+..+|.+|+++|+|++|+..++.-++..|+..
T Consensus        48 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           48 NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence            67899999999999999999 688999999999999999999999999999999864

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.71  E-value=0.0039  Score=49.14  Aligned_cols=55  Identities=24%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.+++++|++++|+..++..++..|+.
T Consensus        39 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           39 TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            56899999999999999999 57788999999999999999999999999998875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.70  E-value=0.0034  Score=51.26  Aligned_cols=55  Identities=11%  Similarity=-0.075  Sum_probs=51.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.++.++|++++|+..++..++..|+.
T Consensus        64 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           64 SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            67899999999999999999 68888999999999999999999999999998865

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.69  E-value=0.0039  Score=50.64  Aligned_cols=55  Identities=11%  Similarity=0.041  Sum_probs=51.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.|+++.|+.+.++.+.++| ++..+..+|.+++++|.+++|+.+++..++.-|+.
T Consensus        25 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A           25 KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence            56799999999999999999 68899999999999999999999999999988875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.62  E-value=0.0043  Score=49.88  Aligned_cols=55  Identities=11%  Similarity=-0.015  Sum_probs=38.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.++.+.|++++|+..++..++..|+.
T Consensus        63 ~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           63 ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            56778888888888888888 46677777888888888888888887777777654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.62  E-value=0.0045  Score=51.61  Aligned_cols=55  Identities=13%  Similarity=0.044  Sum_probs=51.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.+|.++|++++|+..++..++..|+.
T Consensus        67 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           67 AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            57899999999999999999 68889999999999999999999999999998864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.56  E-value=0.0069  Score=44.29  Aligned_cols=55  Identities=18%  Similarity=0.258  Sum_probs=50.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.+.| ++.-+..+|.++.+.|++++|+..++..++..|+.
T Consensus        21 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A           21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            46799999999999999999 57789999999999999999999999999988865

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.0061  Score=48.06  Aligned_cols=52  Identities=13%  Similarity=0.130  Sum_probs=46.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHh
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQW  358 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~  358 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.++.++|++++|+..++..++..
T Consensus        50 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           50 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            67899999999999999999 57788889999999999999999999999888

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.52  E-value=0.0048  Score=47.72  Aligned_cols=54  Identities=11%  Similarity=0.001  Sum_probs=49.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.+|.++|++++|+..++..++..|+
T Consensus        19 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A           19 KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            46799999999999999999 5778999999999999999999999999887664

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.52  E-value=0.0056  Score=50.93  Aligned_cols=55  Identities=11%  Similarity=-0.052  Sum_probs=38.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++..+.-+|.++.+.|.+++|+..++..++..|+.
T Consensus        43 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   98 (150)
T 4ga2_A           43 EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ   98 (150)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence            34577777777777777777 46666777777777777777777777777666654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.49  E-value=0.0067  Score=50.38  Aligned_cols=56  Identities=11%  Similarity=-0.003  Sum_probs=52.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.++++.+.++| ++.-+..+|.+|+++|++++|+..++..++..|+..
T Consensus        57 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           57 ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence            67899999999999999999 577899999999999999999999999999999864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.0076  Score=47.50  Aligned_cols=55  Identities=15%  Similarity=0.048  Sum_probs=51.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.++| ++..+..+|.+++++|+|++|+.+++..++..|+.
T Consensus        16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   71 (126)
T 3upv_A           16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF   71 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            46799999999999999999 67899999999999999999999999999998875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.41  E-value=0.007  Score=49.33  Aligned_cols=57  Identities=25%  Similarity=0.220  Sum_probs=52.3

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ...|+++.|+...++++.++| ++.-+..+|.++.+.|+|++|+..++.-++..|+..
T Consensus        29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   86 (142)
T 2xcb_A           29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP   86 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            357899999999999999999 678899999999999999999999999999988753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.36  E-value=0.003  Score=50.84  Aligned_cols=55  Identities=11%  Similarity=-0.019  Sum_probs=51.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.|+++.|+.+.++.+.++| ++..+..+|.++.+.|++++|+..++.-++..|+.
T Consensus        29 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           29 KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            56799999999999999999 67889999999999999999999999999998875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.35  E-value=0.0098  Score=44.47  Aligned_cols=55  Identities=9%  Similarity=-0.101  Sum_probs=35.2

Q ss_pred             CcCCHHHHHHHHHHHhccCCC---hHHHHHHhHHHHHc-CChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESD---AKELRDYSILLYHC-GLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd---p~e~RDrGlLl~~l-g~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.|+   +.-+..+|.++.++ |++++|++.++..++..|++
T Consensus        52 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           52 NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            456666666666666666664   33566666666666 66666666666666666654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.35  E-value=0.0078  Score=50.12  Aligned_cols=56  Identities=13%  Similarity=0.121  Sum_probs=52.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...++++.++| ++..+.-+|.++.++|+|++|+..++.-++..|+..
T Consensus        33 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   89 (148)
T 2vgx_A           33 QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP   89 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            57899999999999999999 688899999999999999999999999999988764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.35  E-value=0.0092  Score=46.61  Aligned_cols=56  Identities=18%  Similarity=0.108  Sum_probs=51.1

Q ss_pred             CcCCHHHHHHHHHHHhccCC-C---hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-D---AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-d---p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...++++.+.| +   +.-+..+|.++++.|++++|...++..++..|++.
T Consensus        51 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           51 ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence            56899999999999999999 5   55688999999999999999999999999999864

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.23  E-value=0.0094  Score=49.45  Aligned_cols=55  Identities=7%  Similarity=-0.014  Sum_probs=51.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|.+|+++|+|++|+.+++..++..|+.
T Consensus        23 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~   78 (164)
T 3sz7_A           23 ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY   78 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            56799999999999999999 68899999999999999999999999999998875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.17  E-value=0.0056  Score=51.27  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=50.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++.-+.-+|.+|.++|++++|+..++.-++.-|+.
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            46799999999999999999 67789999999999999999999999999988764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.13  E-value=0.025  Score=44.73  Aligned_cols=55  Identities=20%  Similarity=0.100  Sum_probs=51.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.++++.+.+.| ++..+..+|.+++++|++++|...++..++..|+.
T Consensus        77 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  132 (148)
T 2dba_A           77 KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN  132 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            56899999999999999999 67788999999999999999999999999988874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.08  E-value=0.016  Score=43.55  Aligned_cols=55  Identities=15%  Similarity=0.006  Sum_probs=44.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++.+.|++.+|...++..++..|+.
T Consensus        50 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           50 KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            67888888888888888888 56677888888888888888888888888777654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.08  E-value=0.015  Score=45.85  Aligned_cols=54  Identities=17%  Similarity=0.154  Sum_probs=49.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.+++++|++++|+..++..++..|+
T Consensus        55 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           55 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            68899999999999999999 5778889999999999999999999999998887

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.07  E-value=0.015  Score=45.29  Aligned_cols=55  Identities=9%  Similarity=0.003  Sum_probs=50.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++...| ++   ..+..+|.++++.|+|++|+..++..++..|++
T Consensus        14 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A           14 KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            46799999999999999999 56   478899999999999999999999999999986

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.01  E-value=0.0081  Score=52.51  Aligned_cols=55  Identities=13%  Similarity=0.065  Sum_probs=50.3

Q ss_pred             CcCCHHHHHHHHHHHhcc-------CCC-hHHH----HHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILL-------ESD-AKEL----RDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL-------~Pd-p~e~----RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .-|+++.|+.++++.|.+       +|+ +..|    --+|..|..+|++++|+.+++.-++..|+-
T Consensus        69 ~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           69 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            567999999999999999       996 5678    899999999999999999999999988864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.00  E-value=0.013  Score=46.32  Aligned_cols=55  Identities=15%  Similarity=-0.126  Sum_probs=50.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.++++.|+|.+|+..++..++..|+.
T Consensus        21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B           21 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence            45699999999999999999 57889999999999999999999999999988874

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.97  E-value=0.028  Score=48.00  Aligned_cols=55  Identities=15%  Similarity=0.138  Sum_probs=50.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.++++.+.++| ++.-+.-+|.+++++|+|++|+..++..++..|+.
T Consensus       100 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            34699999999999999999 57788999999999999999999999999998865

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=95.97  E-value=0.025  Score=49.27  Aligned_cols=55  Identities=9%  Similarity=-0.016  Sum_probs=50.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|.++...|++++|+..++..++.-|+.
T Consensus        66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            45799999999999999999 67889999999999999999999999999998875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.91  E-value=0.021  Score=44.08  Aligned_cols=56  Identities=18%  Similarity=0.126  Sum_probs=51.4

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ...|+++.|+.+.++.+.+.| ++.-+..+|.++++.|++++|+..++..++..|+.
T Consensus        61 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A           61 TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence            367899999999999999999 57889999999999999999999999999988764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.77  E-value=0.021  Score=44.33  Aligned_cols=54  Identities=11%  Similarity=-0.077  Sum_probs=49.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.++.+.|++++|+..++..++..|+
T Consensus        31 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           31 EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            56799999999999999999 5778899999999999999999999999988764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=95.76  E-value=0.032  Score=52.87  Aligned_cols=54  Identities=15%  Similarity=0.180  Sum_probs=42.7

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .|+++.|+.++++.+.++| ++..+..+|.+|+++|+|++|+.+++..++..|+.
T Consensus       209 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            4488888888888888888 46677788888888888888888888888877764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=95.74  E-value=0.023  Score=47.45  Aligned_cols=55  Identities=16%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.+|.+.|.+++|+..++..+...|+.
T Consensus        17 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~   72 (184)
T 3vtx_A           17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS   72 (184)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence            45799999999999999999 57788899999999999999999999888877764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=95.71  E-value=0.022  Score=42.80  Aligned_cols=55  Identities=15%  Similarity=0.044  Sum_probs=50.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.+.| ++..+..+|.++.+.|++++|+..++..++..|+.
T Consensus        16 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (118)
T 1elw_A           16 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW   71 (118)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence            46799999999999999999 67889999999999999999999999999988764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.66  E-value=0.025  Score=49.62  Aligned_cols=56  Identities=21%  Similarity=0.137  Sum_probs=52.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...++.+.++| ++..+..+|.++.+.|++++|+..++..++..|+..
T Consensus        17 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~   73 (217)
T 2pl2_A           17 ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL   73 (217)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            56799999999999999999 578899999999999999999999999999998753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.66  E-value=0.032  Score=42.57  Aligned_cols=55  Identities=18%  Similarity=0.219  Sum_probs=50.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++.+.|++++|...++..++..|+.
T Consensus        58 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           58 KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence            56899999999999999999 57789999999999999999999999999988864

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.61  E-value=0.022  Score=43.99  Aligned_cols=55  Identities=15%  Similarity=0.007  Sum_probs=50.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++.+.|++++|+..++..++..|+.
T Consensus        28 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~   83 (133)
T 2lni_A           28 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF   83 (133)
T ss_dssp             HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            56799999999999999999 67889999999999999999999999999988764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.47  E-value=0.023  Score=42.35  Aligned_cols=54  Identities=17%  Similarity=0.225  Sum_probs=50.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++++.|++++|+..++..++..|+
T Consensus        18 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A           18 DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            56799999999999999999 5778999999999999999999999999998876

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=95.46  E-value=0.039  Score=41.92  Aligned_cols=55  Identities=16%  Similarity=0.233  Sum_probs=49.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++.+.| ++..+...|.++++.|++++|...++..++..|++
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            56799999999999999999 57778899999999999999999999999888764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.44  E-value=0.043  Score=41.45  Aligned_cols=55  Identities=18%  Similarity=0.258  Sum_probs=50.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++++.+.| ++..+...|.++++.|++++|...++..++..|+.
T Consensus        55 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           55 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            56899999999999999999 67788999999999999999999999999888764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.39  E-value=0.04  Score=44.40  Aligned_cols=55  Identities=16%  Similarity=0.013  Sum_probs=48.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++.+.|++++|+..++..++..|+.
T Consensus        59 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           59 RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  114 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            56799999999999999999 57788899999999999999999999998887764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.38  E-value=0.057  Score=42.51  Aligned_cols=55  Identities=18%  Similarity=0.047  Sum_probs=50.3

Q ss_pred             CcCCHHHHHHHHHHHhccCCC----hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESD----AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd----p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.+.|+    +..+..+|.++++.|+|++|+..++..++..|+.
T Consensus        40 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           40 KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred             HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence            567999999999999999996    4578999999999999999999999999988764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=95.35  E-value=0.0087  Score=47.07  Aligned_cols=54  Identities=19%  Similarity=0.043  Sum_probs=46.1

Q ss_pred             cCCHHHHHHHHHHHhcc---CC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          308 FGDMRCALAACERLILL---ES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL---~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .|+++.|+.+.++.+.+   +| ++..+..+|.+|++.|+|++|+..++..++..|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   60 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH   60 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            46889999999999999   47 46689999999999999999999999999999875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=95.35  E-value=0.035  Score=49.34  Aligned_cols=56  Identities=9%  Similarity=-0.009  Sum_probs=51.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-C---hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-D---AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-d---p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...+.++...| +   +.-+..+|.++++.|.|.+|+..++.+++..|++.
T Consensus        27 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~   86 (261)
T 3qky_A           27 NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP   86 (261)
T ss_dssp             HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence            57899999999999999999 5   45789999999999999999999999999998753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=95.34  E-value=0.034  Score=55.12  Aligned_cols=56  Identities=13%  Similarity=0.100  Sum_probs=48.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.++++.+.++| ++..+.-+|.+|+++|+|++|+.+++..++..|+..
T Consensus       329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred             HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            56799999999999999999 577899999999999999999999999999888653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.32  E-value=0.048  Score=41.52  Aligned_cols=55  Identities=13%  Similarity=0.039  Sum_probs=50.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.+.| ++..+..+|.++.+.|.+++|+..++..++..|+.
T Consensus        24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   79 (131)
T 2vyi_A           24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY   79 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence            46799999999999999999 57789999999999999999999999999988764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=95.26  E-value=0.038  Score=48.50  Aligned_cols=56  Identities=13%  Similarity=-0.025  Sum_probs=50.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-Ch---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...++++...| ++   ..+-.+|.++++.|.|++|+..++.+++..|++.
T Consensus        16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A           16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            56799999999999999999 44   3688899999999999999999999999999874

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=95.07  E-value=0.046  Score=41.75  Aligned_cols=55  Identities=11%  Similarity=0.106  Sum_probs=50.1

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.+.| ++..+..+|.++.+.|.+++|+..++..++..|+.
T Consensus        16 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A           16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            46799999999999999999 57788999999999999999999999999887753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=95.07  E-value=0.082  Score=51.11  Aligned_cols=55  Identities=20%  Similarity=0.163  Sum_probs=51.1

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.++++.+.++| ++..+--+|.+|+++|+|++|+.+|+..++..|+.
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~  340 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  340 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            57799999999999999999 57788999999999999999999999999998864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.05  E-value=0.058  Score=43.40  Aligned_cols=55  Identities=15%  Similarity=0.012  Sum_probs=50.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.+.| ++..+..+|.++.+.|+|.+|+..++..++..|+.
T Consensus        25 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   80 (166)
T 1a17_A           25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   80 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            46799999999999999999 57789999999999999999999999999988864

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.01  E-value=0.046  Score=42.72  Aligned_cols=51  Identities=8%  Similarity=-0.055  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          310 DMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       310 d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..+.|....++.|.++| ++.-+-..|.++++.|+|.+|+..++..+++.|+
T Consensus        24 ~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           24 MTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            47899999999999999 5789999999999999999999999999999888

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.01  E-value=0.072  Score=40.13  Aligned_cols=55  Identities=18%  Similarity=0.258  Sum_probs=49.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++...| ++..+...|.++++.|++++|+..++..++..|+.
T Consensus        21 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   76 (125)
T 1na0_A           21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence            46799999999999999999 57788999999999999999999999999887764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=94.97  E-value=0.054  Score=46.00  Aligned_cols=55  Identities=22%  Similarity=0.122  Sum_probs=51.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.++| ++..+..+|.+++..|++++|+..++..++..|+.
T Consensus        49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           49 ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence            57899999999999999999 57789999999999999999999999999988764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.95  E-value=0.029  Score=48.80  Aligned_cols=56  Identities=13%  Similarity=0.060  Sum_probs=50.3

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHH----------------HhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRD----------------YSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RD----------------rGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +..|+++.|+.+.++.+.++| ++..+.-                +|.++.+.|++++|+..++..++..|+.
T Consensus        15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   87 (208)
T 3urz_A           15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN   87 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            357899999999999999999 4656666                9999999999999999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=94.93  E-value=0.015  Score=48.19  Aligned_cols=56  Identities=13%  Similarity=0.075  Sum_probs=50.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|++++|+...+..+..+| .+...-..|.+|++.|.|+.|+..++..++..|+..
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~   65 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP   65 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            45699999999999999999 466778899999999999999999999999999863

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.90  E-value=0.038  Score=42.78  Aligned_cols=50  Identities=6%  Similarity=-0.087  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          312 RCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       312 ~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.|+...++.+.++| ++..+..+|.++++.|++++|+..++..++..|+.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   52 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY   52 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence            358889999999999 67899999999999999999999999999988875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=94.89  E-value=0.065  Score=43.35  Aligned_cols=57  Identities=19%  Similarity=0.137  Sum_probs=52.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcCC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNISV  363 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~~  363 (364)
                      ..|+++.|+.+.+..+.+.| ++..+...|.++.+.|++++|...++..++..|+..+
T Consensus       122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence            46799999999999999999 5778999999999999999999999999999988754

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.86  E-value=0.032  Score=52.98  Aligned_cols=56  Identities=13%  Similarity=0.070  Sum_probs=46.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+..+++.+.++| ++..+.-+|.+|+++|+|++|+.+|+..++..|+..
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~  298 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK  298 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            56799999999999999999 577899999999999999999999999988887653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.80  E-value=0.054  Score=46.84  Aligned_cols=55  Identities=9%  Similarity=-0.135  Sum_probs=51.2

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.++|+ +.-+..+|.++.+.|.+++|+..++..++..|+.
T Consensus        54 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           54 NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            568999999999999999995 6789999999999999999999999999998875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.43  E-value=0.076  Score=44.05  Aligned_cols=55  Identities=11%  Similarity=0.027  Sum_probs=50.4

Q ss_pred             CcCCH--HHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDM--RCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~--~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|++  +.|+.+.++.+.++| ++..+..+|.++++.|++.+|+..++..++..|+.
T Consensus        91 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           91 QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            45787  999999999999999 57789999999999999999999999999998875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=94.36  E-value=0.068  Score=40.75  Aligned_cols=54  Identities=17%  Similarity=0.242  Sum_probs=48.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-C-------hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-D-------AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-d-------p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.+.| +       +.-+...|.++++.|++++|...++..++..|+
T Consensus        50 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           50 EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            56799999999999999988 5       567889999999999999999999999988775

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=94.33  E-value=0.084  Score=48.41  Aligned_cols=56  Identities=16%  Similarity=0.136  Sum_probs=51.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+..+++.+.++| ++..+.-+|.+|+++|++++|+..++..++..|+..
T Consensus        50 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           50 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            57899999999999999999 577888999999999999999999999999988753

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=94.24  E-value=0.12  Score=39.15  Aligned_cols=55  Identities=16%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++.+.| ++.-+...|.++.+.|.+++|+..++..++..|+.
T Consensus        47 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  102 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            46799999999999999999 57788899999999999999999999999887754

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=94.21  E-value=0.086  Score=45.93  Aligned_cols=51  Identities=14%  Similarity=0.073  Sum_probs=46.7

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-h------------HHHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLESD-A------------KELRDYSILLYHCGLYEQSLQYLKFYQAQ  357 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p------------~e~RDrGlLl~~lg~~~~A~~dL~~fl~~  357 (364)
                      ..|+++.|+.++++.|.++|+ |            ..+-.+|.++..+|+|++|+.+++.-++.
T Consensus        23 ~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A           23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            467999999999999999996 2            27889999999999999999999999998

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=94.12  E-value=0.14  Score=46.09  Aligned_cols=55  Identities=16%  Similarity=0.203  Sum_probs=51.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.+..+.+.| ++..+..+|.++.+.|.+++|...++..++..|+.
T Consensus       284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~  339 (359)
T 3ieg_A          284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND  339 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            56799999999999999999 68899999999999999999999999999988875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=94.07  E-value=0.13  Score=43.70  Aligned_cols=55  Identities=5%  Similarity=-0.098  Sum_probs=50.1

Q ss_pred             CcCCHHHHHHHHHHHhccCC-Ch----------------HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DA----------------KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp----------------~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.+.| ++                ..+..+|.++.++|+|++|+.+++..++..|+.
T Consensus        50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  121 (198)
T 2fbn_A           50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN  121 (198)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence            56799999999999999999 67                678899999999999999999999999988764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=94.05  E-value=0.064  Score=46.94  Aligned_cols=56  Identities=20%  Similarity=0.067  Sum_probs=51.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHc-----------CChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHC-----------GLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~l-----------g~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +.|+++.|+.+.++.+.++| ++..+..+|.++...           |++++|+..++.-++..|+..
T Consensus        51 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           51 KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            57899999999999999999 577899999999999           999999999999999988753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=93.98  E-value=0.12  Score=45.19  Aligned_cols=55  Identities=18%  Similarity=0.131  Sum_probs=48.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++.-+..+|.++++.|++++|+..++..++..|+.
T Consensus        89 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (275)
T 1xnf_A           89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND  144 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            56799999999999999999 57788899999999999999999999988887765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=93.92  E-value=0.088  Score=51.36  Aligned_cols=55  Identities=9%  Similarity=0.001  Sum_probs=45.1

Q ss_pred             CcCC-HHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGD-MRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d-~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+ ++.|+.++++.+.++| ++.-+-.+|.++.++|++.+|+..++..++.-|+.
T Consensus       143 ~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          143 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence            4564 8888888888888888 56678888888888888888888888888887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=93.84  E-value=0.06  Score=44.33  Aligned_cols=55  Identities=9%  Similarity=-0.066  Sum_probs=49.0

Q ss_pred             CcCCHHHHHHHHHHHhcc------------------CCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILL------------------ESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL------------------~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.+                  +|. ...+..+|.+|+++|+|.+|+.+++..++.-|+.
T Consensus        23 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~   96 (162)
T 3rkv_A           23 VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN   96 (162)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence            578999999999999999                  553 4578899999999999999999999999988875

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=93.83  E-value=0.14  Score=44.68  Aligned_cols=56  Identities=9%  Similarity=0.056  Sum_probs=51.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++.+.+.| ++.-+...|.++.+.|.+++|+..++..++..|+..
T Consensus        55 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  111 (275)
T 1xnf_A           55 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  111 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc
Confidence            56799999999999999999 578899999999999999999999999999888753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=93.81  E-value=0.042  Score=53.70  Aligned_cols=54  Identities=11%  Similarity=0.140  Sum_probs=37.0

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .|+++.|+.++++.+.++| ++..+..+|.++.++|++++|+.+++..++.-|+.
T Consensus       179 ~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          179 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            3566777777777777777 45566777777777777777777777777666653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=93.78  E-value=0.091  Score=46.60  Aligned_cols=56  Identities=16%  Similarity=0.026  Sum_probs=49.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHH-----------------HHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKEL-----------------RDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~-----------------RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...++++.+.| ++...                 ..+|.+|++.|+|.+|+..++..++..|++.
T Consensus       109 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  182 (261)
T 3qky_A          109 DQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP  182 (261)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred             cchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence            47799999999999999999 45433                 6889999999999999999999999999864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=93.61  E-value=0.13  Score=54.71  Aligned_cols=56  Identities=14%  Similarity=0.020  Sum_probs=51.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|.+|.++|++++|++.++.-++..|+.+
T Consensus        55 ~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~  111 (723)
T 4gyw_A           55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA  111 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            67899999999999999999 577899999999999999999999999999988763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=93.61  E-value=0.16  Score=43.63  Aligned_cols=52  Identities=13%  Similarity=0.130  Sum_probs=45.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHh
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQW  358 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~  358 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++.+.|.+.+|+..++..++..
T Consensus       185 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          185 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            67899999999999999998 47778888999999999999999999888887

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=93.55  E-value=0.19  Score=40.52  Aligned_cols=55  Identities=9%  Similarity=0.063  Sum_probs=49.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++.+.| ++..+...|.++.+.|++++|...++..++..|+.
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence            46799999999999999999 57788999999999999999999999999887764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=93.54  E-value=0.11  Score=48.11  Aligned_cols=56  Identities=16%  Similarity=0.142  Sum_probs=44.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHH-HHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQS-LQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A-~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|..+.++.+.++| ++..+..+|.++.+.|.+.++ ...++..++.-|++.
T Consensus       212 ~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          212 AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence            67888888888888888888 577788888888888888764 567778888877764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=93.52  E-value=0.17  Score=43.41  Aligned_cols=55  Identities=15%  Similarity=0.048  Sum_probs=51.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++.+.|++++|+..++..++..|+.
T Consensus       151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  206 (258)
T 3uq3_A          151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF  206 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence            56799999999999999999 67889999999999999999999999999988874

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=93.43  E-value=0.18  Score=42.20  Aligned_cols=52  Identities=17%  Similarity=0.149  Sum_probs=32.1

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      .|+++.|+...++.+.+.| ++..+...|.++.+.|++++|...++..++..|
T Consensus       126 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          126 QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3466666666666666666 355556666666666666666666666666555

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.41  E-value=0.096  Score=48.05  Aligned_cols=55  Identities=15%  Similarity=-0.126  Sum_probs=50.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...+..+.++| ++..+..+|.+|.++|+|++|+.+++..++..|+.
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A           16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            46799999999999999999 67889999999999999999999999998887764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=93.35  E-value=0.21  Score=49.81  Aligned_cols=56  Identities=16%  Similarity=0.014  Sum_probs=51.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...++.+.++| ++..+..+|.+|+++|++++|+..++..++..|+..
T Consensus        52 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           52 RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            46799999999999999999 577889999999999999999999999999988754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=93.23  E-value=0.16  Score=42.12  Aligned_cols=55  Identities=16%  Similarity=0.089  Sum_probs=49.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHH-HHHcCCh--HHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSIL-LYHCGLY--EQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlL-l~~lg~~--~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|.+ +++.|.+  ++|+..++..++..|+.
T Consensus        56 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~  114 (177)
T 2e2e_A           56 WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE  114 (177)
T ss_dssp             HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence            46799999999999999999 67788999999 7899999  99999999999988874

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=93.10  E-value=0.18  Score=46.49  Aligned_cols=55  Identities=16%  Similarity=0.145  Sum_probs=41.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|.+|.+.|++++|+..++..++..|+.
T Consensus       111 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  166 (365)
T 4eqf_A          111 ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY  166 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc
Confidence            56778888888888887777 46677777888888888888888777777766653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=93.00  E-value=0.23  Score=41.53  Aligned_cols=50  Identities=14%  Similarity=0.097  Sum_probs=39.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHc-CChHHHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHC-GLYEQSLQYLKFYQA  356 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~l-g~~~~A~~dL~~fl~  356 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++... |++++|+..++..++
T Consensus        54 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           54 YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            67788888888888888888 466777788888888 888888888777776

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=92.94  E-value=0.16  Score=43.35  Aligned_cols=55  Identities=13%  Similarity=-0.004  Sum_probs=50.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++.+.|++.+|...++..++..|+.
T Consensus       171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  226 (243)
T 2q7f_A          171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH  226 (243)
T ss_dssp             HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence            45799999999999999999 57789999999999999999999999999998875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=92.94  E-value=0.2  Score=45.03  Aligned_cols=53  Identities=17%  Similarity=0.117  Sum_probs=33.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      ..|+++.|+...++++.+.| ++.-+..+|.++.+.|.+++|+..++..++..|
T Consensus        49 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           49 AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            45666666666666666666 355566666666666666666666666665544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=92.92  E-value=0.16  Score=44.45  Aligned_cols=55  Identities=7%  Similarity=0.008  Sum_probs=47.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHH-----------------HHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKEL-----------------RDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~-----------------RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++...| ++...                 ...|.+|++.|+|.+|+..++..++..|++
T Consensus       108 ~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  180 (225)
T 2yhc_A          108 DPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT  180 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS
T ss_pred             CcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC
Confidence            46799999999999999999 45322                 467999999999999999999999999986

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=92.90  E-value=0.19  Score=46.04  Aligned_cols=55  Identities=13%  Similarity=0.010  Sum_probs=50.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++.+.|++.+|+..++..++..|+.
T Consensus       263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            67899999999999999999 57788999999999999999999999999988875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=92.86  E-value=0.14  Score=53.46  Aligned_cols=56  Identities=11%  Similarity=0.014  Sum_probs=52.1

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...++.+.++| ++..+..+|.+|++.|+|++|+.+++..++..|+..
T Consensus       445 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  501 (681)
T 2pzi_A          445 DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL  501 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS
T ss_pred             hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            67899999999999999999 577899999999999999999999999999998763

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=92.83  E-value=0.21  Score=46.06  Aligned_cols=55  Identities=11%  Similarity=0.038  Sum_probs=48.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.+|.++|++.+|+..++..++..|++
T Consensus       259 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          259 NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            67899999999999999999 47788889999999999999999999998888775

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=92.75  E-value=0.2  Score=42.41  Aligned_cols=55  Identities=5%  Similarity=0.032  Sum_probs=49.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-Ch----------------HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DA----------------KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp----------------~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++                .-+..+|.++++.|++++|...++..++..|+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            57899999999999999888 45                678999999999999999999999999988854

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=92.75  E-value=0.2  Score=47.98  Aligned_cols=54  Identities=13%  Similarity=0.089  Sum_probs=40.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.++++++.++| ++..+.-+|.+++++|++++|+..++..++..|+
T Consensus        51 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  105 (514)
T 2gw1_A           51 SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF  105 (514)
T ss_dssp             HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred             HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56778888888888888887 4566777788888888888888887777766553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=92.67  E-value=0.079  Score=48.67  Aligned_cols=54  Identities=13%  Similarity=-0.091  Sum_probs=41.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      +.|+++.|+...++++.++| ++..+..+|.++.+.|++++|...|+..++..|+
T Consensus       129 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~  183 (287)
T 3qou_A          129 QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD  183 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred             hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence            45688888888888888888 5677888888888888888888777766555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=92.60  E-value=0.033  Score=46.84  Aligned_cols=53  Identities=13%  Similarity=0.028  Sum_probs=43.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      ..|+++.|+...++.+.++| ++.-+..+|.++.+.|++++|+..++..++..|
T Consensus        18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A           18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ   71 (176)
T ss_dssp             HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence            56789999999999999998 577888999999999999999888876655544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=92.52  E-value=0.3  Score=41.59  Aligned_cols=55  Identities=13%  Similarity=-0.058  Sum_probs=46.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++.+.| ++..+..+|.++.+.|++++|+..++..++..|+.
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND  158 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            67888899999998888888 56778888888999999999988888888877753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=92.46  E-value=0.36  Score=45.54  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=51.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.|+++.|+..+++++.+.| ++..+..+|.++.+.|++++|+..++..++..|+.
T Consensus       307 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence            67899999999999999999 57889999999999999999999999999988875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=92.40  E-value=0.29  Score=52.03  Aligned_cols=54  Identities=11%  Similarity=0.017  Sum_probs=45.1

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|.+|.++|+|++|.+.++..++..|+
T Consensus       123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            56788888888888888888 4677888888888888888888888888877664

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=92.26  E-value=0.3  Score=43.45  Aligned_cols=54  Identities=11%  Similarity=0.027  Sum_probs=50.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.+.| ++..+...|.++.+.|++++|...++..++..|+
T Consensus       218 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          218 NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            57899999999999999999 5778899999999999999999999999999887

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=92.20  E-value=0.17  Score=43.99  Aligned_cols=53  Identities=8%  Similarity=0.092  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcC-----------ChHHHHHHHHHHHHHhcCcC
Q 017874          310 DMRCALAACERLILLES-DAKELRDYSILLYHCG-----------LYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       310 d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg-----------~~~~A~~dL~~fl~~~~~~~  362 (364)
                      .++.|+.+.++.|.++| ++..+...|.+|+.+|           ++++|++.++.-++.-|+..
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            47899999999999999 5778999999999985           89999999999999998753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=92.13  E-value=0.26  Score=43.06  Aligned_cols=55  Identities=13%  Similarity=0.042  Sum_probs=38.6

Q ss_pred             CcCCHHHHHHHHHHHhccCCChHH----HHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESDAKE----LRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pdp~e----~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+...+++..    +..+|.++.+.|++++|+..++..++..|+.
T Consensus        49 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~  107 (272)
T 3u4t_A           49 ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR  107 (272)
T ss_dssp             HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Confidence            667777777777777773334332    6777777777777777777777777776654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=92.13  E-value=0.3  Score=44.62  Aligned_cols=55  Identities=15%  Similarity=0.086  Sum_probs=45.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+..+|.++...|++.+|+..++..++..|+.
T Consensus       110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  165 (368)
T 1fch_A          110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY  165 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            67888888888888888888 56778888888888888888888888888877765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=91.93  E-value=0.35  Score=41.60  Aligned_cols=55  Identities=13%  Similarity=0.221  Sum_probs=49.1

Q ss_pred             CcCCHHHHHHHHHHHhccCC--ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES--DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P--dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...+..+.+.|  ++..+.-+|.++++.|.+++|+..++..++..|+.
T Consensus        19 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   75 (228)
T 4i17_A           19 NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL   75 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH
T ss_pred             HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch
Confidence            56799999999999999996  46666779999999999999999999999888764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=91.91  E-value=0.34  Score=38.68  Aligned_cols=55  Identities=5%  Similarity=0.064  Sum_probs=46.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChH-------HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAK-------ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~-------e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+..+++.+.++| ++.       ..--+|.++..+|+|.+|+..++..++..||-
T Consensus        54 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           54 EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            56799999999999999998 331       34567899999999999999999998877763

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=91.84  E-value=0.22  Score=49.64  Aligned_cols=56  Identities=14%  Similarity=0.013  Sum_probs=51.5

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ...|+++.|+.+.++.+.++| ++..+..+|.+|.++|+|++|+.+++..++..|+.
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   73 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   73 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            367899999999999999999 57789999999999999999999999999887764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=91.80  E-value=0.31  Score=45.00  Aligned_cols=56  Identities=11%  Similarity=-0.121  Sum_probs=51.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++++...| ++..+-.+|.++.++|++++|...|+.-++.-|+.+
T Consensus       178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~  234 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP  234 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            45899999999999999999 678899999999999999999999999999988753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=91.75  E-value=0.47  Score=40.91  Aligned_cols=55  Identities=9%  Similarity=-0.139  Sum_probs=50.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+.-.+.++.+.|++++|...++..++..|++
T Consensus       187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            56799999999999999999 57788899999999999999999999999998875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=91.64  E-value=0.27  Score=41.09  Aligned_cols=50  Identities=10%  Similarity=0.002  Sum_probs=30.5

Q ss_pred             CcCCHHHHHHHHHHHhccCCC---hHHHHHHhHHHHHcCChHHHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLESD---AKELRDYSILLYHCGLYEQSLQYLKFYQA  356 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd---p~e~RDrGlLl~~lg~~~~A~~dL~~fl~  356 (364)
                      ..|+++.|+.+.++++.++|+   +.-+...|.++..+|.+++|+..++..+.
T Consensus       120 ~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          120 QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            556666666666666666663   22456666666666666666666555443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=91.60  E-value=0.35  Score=45.58  Aligned_cols=55  Identities=7%  Similarity=0.031  Sum_probs=50.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-C---------------hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-D---------------AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-d---------------p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| +               ...+..+|.+|.++|+|.+|+..++..++..|+.
T Consensus       159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~  229 (336)
T 1p5q_A          159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN  229 (336)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            46799999999999999999 4               3688999999999999999999999999998875

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=91.59  E-value=0.4  Score=42.60  Aligned_cols=56  Identities=11%  Similarity=-0.014  Sum_probs=48.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++.+.+.| ++..+...|.++.+.|.+++|+..++..++..|+..
T Consensus        67 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  123 (327)
T 3cv0_A           67 ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  123 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred             HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence            67899999999999999998 577788889999999999999999998888877654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=91.59  E-value=0.36  Score=48.29  Aligned_cols=55  Identities=7%  Similarity=-0.211  Sum_probs=47.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|.+|.+.|++++|++.++..++..|+.
T Consensus        69 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A           69 TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            67889999999999999998 57788889999999999999999999888887764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=91.58  E-value=0.15  Score=49.43  Aligned_cols=46  Identities=13%  Similarity=0.164  Sum_probs=32.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLK  352 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~  352 (364)
                      ..|+++.|+.++++.+.++| ++..+..+|.++.++|++.+|+..++
T Consensus        71 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  117 (537)
T 3fp2_A           71 STGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS  117 (537)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            56677777777777777777 45566677777777777777777665

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=91.56  E-value=0.31  Score=42.08  Aligned_cols=55  Identities=16%  Similarity=0.126  Sum_probs=49.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+...|.++++.|++++|...++..++..|+.
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  208 (252)
T 2ho1_A          153 QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN  208 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred             HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            35699999999999999999 57788999999999999999999999998877654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=91.49  E-value=0.13  Score=44.91  Aligned_cols=55  Identities=18%  Similarity=0.097  Sum_probs=36.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|...+..+.+++|+..++..++..|+.
T Consensus       120 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  175 (272)
T 3u4t_A          120 NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI  175 (272)
T ss_dssp             HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            56677777777777777777 45566667744444557777777777777666653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=91.39  E-value=0.5  Score=42.01  Aligned_cols=55  Identities=7%  Similarity=-0.197  Sum_probs=35.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.| ++..+.-+|.++.+.|++++|...++..++..|+.
T Consensus       137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  192 (330)
T 3hym_B          137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED  192 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence            45666777777777776666 34455556777777777777777666666665543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=91.36  E-value=0.1  Score=45.41  Aligned_cols=55  Identities=11%  Similarity=0.012  Sum_probs=49.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCCh----------HHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLY----------EQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~----------~~A~~dL~~fl~~~~~~  361 (364)
                      +.+.++.|+.+.++.+.++| ++..+--.|.++.+++++          ++|+..|+.-++.-|+.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~   79 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK   79 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence            45589999999999999999 678888899999999886          59999999999999875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=91.17  E-value=0.37  Score=45.43  Aligned_cols=55  Identities=16%  Similarity=0.099  Sum_probs=40.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++.+.| ++.-+..+|.+|.++|++++|+..++..++..|+.
T Consensus        72 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A           72 AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred             HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            56777777777777777777 45667777777777777777777777777666653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=91.04  E-value=0.44  Score=44.35  Aligned_cols=54  Identities=13%  Similarity=0.103  Sum_probs=26.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++++.+.| ++..+..+|.++.+.|.+++|+..++..++..|+
T Consensus       283 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  337 (388)
T 1w3b_A          283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE  337 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            34455555555555555554 3444444555555555555555555544444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=90.84  E-value=0.28  Score=48.59  Aligned_cols=54  Identities=11%  Similarity=-0.012  Sum_probs=50.6

Q ss_pred             CcCCH-HHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDM-RCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~-~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|++ +.|+.+.++.+.++| ++..+..+|.+|++.|++++|+..++..++..|+
T Consensus       114 ~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  169 (474)
T 4abn_A          114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN  169 (474)
T ss_dssp             SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred             hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            67899 999999999999999 5789999999999999999999999999988776

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=90.82  E-value=0.41  Score=42.62  Aligned_cols=55  Identities=11%  Similarity=0.039  Sum_probs=45.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcC-ChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCG-LYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg-~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++..+| ++..+...|.++.+.| .+++|...++..++..|+.
T Consensus        68 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~  124 (330)
T 3hym_B           68 ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY  124 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC
T ss_pred             HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc
Confidence            67788888888888888888 5777888888888888 8888888888888777654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=90.80  E-value=0.41  Score=47.90  Aligned_cols=55  Identities=15%  Similarity=-0.061  Sum_probs=51.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHc---CChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHC---GLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~l---g~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++..+..+|.++.+.   |.+++|.+.++..++..|+.
T Consensus       103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            78999999999999999999 577899999999999   99999999999999998875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=90.37  E-value=0.45  Score=45.43  Aligned_cols=55  Identities=11%  Similarity=-0.029  Sum_probs=51.7

Q ss_pred             CcCCHHHHHHHHHHHhccCCChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++++.++|++..+..+|.++.+.|.+++|+..++..++..|+.
T Consensus        18 ~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~   72 (514)
T 2gw1_A           18 RNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY   72 (514)
T ss_dssp             HTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred             HhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence            4679999999999999999998899999999999999999999999999998875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=90.33  E-value=0.42  Score=44.52  Aligned_cols=55  Identities=13%  Similarity=0.039  Sum_probs=50.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++++.+.| ++..+..+|.++.+.|++++|+..++..++..|+.
T Consensus       317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~  372 (388)
T 1w3b_A          317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            78999999999999999999 57788999999999999999999999999887764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=89.98  E-value=0.33  Score=44.41  Aligned_cols=55  Identities=13%  Similarity=0.022  Sum_probs=46.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.++.+.|+...++.+.++| ++..+-.+|.+|.+.|++++|+..|+..++.-|+.
T Consensus       197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            34456668888889999999 57788999999999999999999999999988875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=89.93  E-value=0.29  Score=48.50  Aligned_cols=53  Identities=13%  Similarity=-0.071  Sum_probs=48.9

Q ss_pred             CCHHHHHHHHHHHhccCC---C-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          309 GDMRCALAACERLILLES---D-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       309 ~d~~~AL~a~ErLllL~P---d-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      |+++.|+.+.++.+.++|   + +..+..+|.+|++.|+|++|+..++..++..|+.
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            789999999999999999   5 6689999999999999999999999999988875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=89.88  E-value=0.57  Score=46.10  Aligned_cols=55  Identities=18%  Similarity=0.117  Sum_probs=52.1

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.|+++.|+.+.++++.+.| ++.-+..+|.+|.+.|++++|...++..++..|+.
T Consensus       528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            78999999999999999999 68899999999999999999999999999998875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=89.81  E-value=0.59  Score=45.09  Aligned_cols=52  Identities=10%  Similarity=-0.012  Sum_probs=22.4

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      .|+++.|+.+.++++.+.| ++..+.-+|.++.+.|++++|...++..++..|
T Consensus       357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence            3444444444444444444 233344444444444444444444444444333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=89.67  E-value=0.52  Score=46.49  Aligned_cols=55  Identities=5%  Similarity=0.001  Sum_probs=50.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-C---------------hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-D---------------AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-d---------------p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| +               ...+..+|.+|+++|+|.+|+.+++..++..|+.
T Consensus       280 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~  350 (457)
T 1kt0_A          280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN  350 (457)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence            57899999999999999999 4               3578899999999999999999999999998875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=89.05  E-value=0.76  Score=47.81  Aligned_cols=56  Identities=9%  Similarity=-0.183  Sum_probs=51.2

Q ss_pred             cCcCCHHHHHHHHHHHh--------ccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLI--------LLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLl--------lL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +..|+++.|+.+.++.+        .++| ++..+..+|.++++.|+|++|+..++..++..|+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  466 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR  466 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence            67899999999999999        8999 57789999999999999999999999999998875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=88.40  E-value=0.57  Score=44.21  Aligned_cols=56  Identities=11%  Similarity=0.020  Sum_probs=49.9

Q ss_pred             cCcCCHHHHHHHHHHHhccCCC-h-----------------HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLILLESD-A-----------------KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~Pd-p-----------------~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ...|+++.|+.+.++.+.+.|+ +                 ..+..+|.+|.++|+|.+|+.+++..++..|+.
T Consensus       190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~  263 (338)
T 2if4_A          190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN  263 (338)
T ss_dssp             CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC
T ss_pred             HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4678999999999999999995 4                 267889999999999999999999999988864

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=87.87  E-value=0.34  Score=46.69  Aligned_cols=55  Identities=4%  Similarity=-0.078  Sum_probs=49.0

Q ss_pred             CcCCHHHHHHHHHHHhc----------------cCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLIL----------------LES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLll----------------L~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.                +.| ++..+..+|.+|+++|+|++|+.+++.-++..|+.
T Consensus       235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~  306 (370)
T 1ihg_A          235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN  306 (370)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh
Confidence            56799999999999998                677 46788999999999999999999999999887764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=86.89  E-value=0.78  Score=45.09  Aligned_cols=52  Identities=15%  Similarity=0.016  Sum_probs=24.1

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      .|+++.|+...++++.+.| ++..+.-+|.+|.+.|++++|...++..++..|
T Consensus       420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  472 (597)
T 2xpi_A          420 EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ  472 (597)
T ss_dssp             HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4444444444444444444 333444444444444444444444444444433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=86.76  E-value=0.98  Score=34.21  Aligned_cols=38  Identities=5%  Similarity=-0.122  Sum_probs=33.0

Q ss_pred             CC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          325 ES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       325 ~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +| ++..+-.+|.++++.|+|++|+..++..++..|+..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   41 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV   41 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            57 577899999999999999999999999999988753

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=86.40  E-value=1  Score=40.91  Aligned_cols=54  Identities=15%  Similarity=-0.051  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHHhccCC-C--h----HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          309 GDMRCALAACERLILLES-D--A----KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       309 ~d~~~AL~a~ErLllL~P-d--p----~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      |+++.|+.+.++.+.+.| +  +    .-+...|.++.++|+|++|+..++.-++..|+..
T Consensus       132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence            799999999999999988 3  2    2467889999999999999999999999887653

>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}

Probab=86.37  E-value=0.85  Score=43.33  Aligned_cols=72  Identities=13%  Similarity=0.142  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCccCCCCCCcCCcccccHHHHHhhccCChHHHHHHHHHHHHHh
Q 017874          119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML  198 (364)
Q Consensus       119 ~Ld~La~ev~~~l~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylevArRL  198 (364)
                      +|.++|.++..     ...++.+++++|++++.++..|.....  .    ...--..+|+.|+|.+--.+.+++.++|.+
T Consensus       127 ~i~~~A~~~~~-----~~~~~~~~~~ai~~~v~~~~~Y~~~~~--~----~~~~a~~~l~~~~G~C~d~A~l~val~Ra~  195 (293)
T 3isr_A          127 KLQKLAYKEFG-----KIENVYSKVLAITDWIYNNVEYISGST--N----SQTSAFDTITERAGVCRDFAHLGIALCRAL  195 (293)
T ss_dssp             GSHHHHHHHHT-----TCCSHHHHHHHHHHHHHHHSEECTTSC--C----TTCCHHHHHHHCEECHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhhcEEeccCC--C----CCCCHHHhhcCCcEehHHHHHHHHHHHHHC
Confidence            45666666532     234667999999999999888775433  1    112346799999999999999999999999


Q ss_pred             CCc
Q 017874          199 RIW  201 (364)
Q Consensus       199 glp  201 (364)
                      |||
T Consensus       196 GIP  198 (293)
T 3isr_A          196 SIP  198 (293)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            999

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=86.15  E-value=1.2  Score=42.31  Aligned_cols=52  Identities=12%  Similarity=-0.204  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcC--ChHHHHHHHHHHHHHhcCc
Q 017874          310 DMRCALAACERLILLESD-AKELRDYSILLYHCG--LYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       310 d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg--~~~~A~~dL~~fl~~~~~~  361 (364)
                      .-++||.+++.+|.++|+ ...|--||.++.++|  .+++|+..++..+...|.+
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~  102 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN  102 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc
Confidence            457899999999999995 558899999999999  9999999999999988875

>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}

Probab=85.91  E-value=1.4  Score=44.82  Aligned_cols=76  Identities=8%  Similarity=0.054  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCccCCCCCCcCCcccccHHHHHhhccCChHHHHHHHHHHHHHh
Q 017874          119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML  198 (364)
Q Consensus       119 ~Ld~La~ev~~~l~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~Y~dp~Ns~L~~VLe~R~GiPIsL~iIylevArRL  198 (364)
                      .+.+++.++.     ....++.+++++|-++.-+...|.+...  .+......-...||++|.|.+...+.+++.++|.+
T Consensus       229 ~i~~~a~~l~-----~~~~~~~ek~~~iy~~V~~~i~y~~~~~--~~~g~~~~~a~~vl~~~~G~C~d~a~Ll~AllRa~  301 (506)
T 3kd4_A          229 ESKTFAQFLT-----DKSGNEQEKVNIIRDHILNNLSTCPIPM--AMTGYTVRDIDTVLRSAYGTPLEIAQLLNVMLNAA  301 (506)
T ss_dssp             HHHHHHHHHH-----SSCSSHHHHHHHHHHHHHHHCEECCCCG--GGGTTCCCCHHHHHHHTEECHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-----hcCCCHHHHHHHHHHHHHhccEecceec--ccCCCCCCCHHHHHHhCCcchHHHHHHHHHHHHHC
Confidence            4455555543     2346788999999999888887765332  22221233488999999999999999999999999


Q ss_pred             CCc
Q 017874          199 RIW  201 (364)
Q Consensus       199 glp  201 (364)
                      |||
T Consensus       302 GIp  304 (506)
T 3kd4_A          302 GIP  304 (506)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            999

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=85.73  E-value=1.5  Score=34.02  Aligned_cols=54  Identities=17%  Similarity=0.124  Sum_probs=37.7

Q ss_pred             CcCCHHHHHHHHHHHhccCCChHH-------HHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLESDAKE-------LRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pdp~e-------~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+...+..+.+.+....       ....|.++...|++++|...++..++....
T Consensus        61 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  121 (164)
T 3ro3_A           61 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  121 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            567888888888877776654452       345677777778888888877777766543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=84.68  E-value=0.79  Score=41.71  Aligned_cols=55  Identities=13%  Similarity=-0.107  Sum_probs=44.8

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hH-------HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESD-AK-------ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~-------e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.+.|+ +.       .+.-.|+++..+|++.+|...++.+++..|+.
T Consensus       170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            568999999999999999984 32       35678999999999999999999998877764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=84.41  E-value=1.8  Score=37.19  Aligned_cols=54  Identities=13%  Similarity=0.096  Sum_probs=45.6

Q ss_pred             CcCCHHHHHHHHHHHhcc--------CCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILL--------ESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL--------~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.+        .|+ ...+...|.++.+.|++++|...++..++..++
T Consensus       139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            346999999999999988        442 457889999999999999999999999887543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=84.24  E-value=1  Score=38.93  Aligned_cols=54  Identities=17%  Similarity=0.146  Sum_probs=46.5

Q ss_pred             cCCHHHHHHHHHHHhccC-C-C-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          308 FGDMRCALAACERLILLE-S-D-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~-P-d-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .++.++++...|.++..+ | + ..-+--.|+.+|++|+|..|+.+++..++.-|+.
T Consensus        48 ~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           48 NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            348899999999999988 6 3 3456678999999999999999999999999864

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=83.78  E-value=1.5  Score=39.91  Aligned_cols=56  Identities=9%  Similarity=0.023  Sum_probs=44.5

Q ss_pred             CcCCHHHHHHHHHHHhcc---CCC--hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILL---ESD--AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL---~Pd--p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +.|++++|+.+.++.+..   .|+  ...+..++.++.+.|+++.|...++..++.+|++.
T Consensus       215 ~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence            668889999999988885   442  33677778888888999999888888888888743

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=83.48  E-value=1.3  Score=42.05  Aligned_cols=56  Identities=11%  Similarity=-0.067  Sum_probs=47.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..++++.|..+.+..+.+.| ++..+..+|.+|.+.|.+..|+..++..++..|+.+
T Consensus       225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  281 (472)
T 4g1t_A          225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA  281 (472)
T ss_dssp             -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence            35688899999999999999 577899999999999999999999999999988864

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=83.44  E-value=1.6  Score=43.07  Aligned_cols=53  Identities=11%  Similarity=0.029  Sum_probs=47.3

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      .|++++|..+.|+++...| ++..|..+|-++.+.|.++.|..-++..++..|+
T Consensus        25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~   78 (530)
T 2ooe_A           25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH   78 (530)
T ss_dssp             SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred             hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999 5778999999999999999999999999888874

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=83.09  E-value=2.8  Score=38.30  Aligned_cols=55  Identities=11%  Similarity=-0.008  Sum_probs=46.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChH------HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAK------ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~------e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++.+.+.| .+.      ...-.|+++..+|++.+|+..++.++ ..|+..
T Consensus       167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            67899999999999999999 432      45667888889999999999999999 777653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=83.07  E-value=2.5  Score=32.56  Aligned_cols=54  Identities=7%  Similarity=-0.020  Sum_probs=46.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-C--h----HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-D--A----KELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-d--p----~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+...++.+.+.+ .  +    ....-.|.++.+.|.+.+|...++..++....
T Consensus       101 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            67899999999999999987 3  1    24778899999999999999999999887654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=82.42  E-value=2.5  Score=39.22  Aligned_cols=52  Identities=21%  Similarity=0.228  Sum_probs=43.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-Ch----HHHHHHhHHHHHcCChHHHHHHHHHHHHHh
Q 017874          307 RFGDMRCALAACERLILLES-DA----KELRDYSILLYHCGLYEQSLQYLKFYQAQW  358 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp----~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~  358 (364)
                      ..|+++.|+...++.+.+.| ++    ..+..+|.++++.|++++|...++..++..
T Consensus        60 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (411)
T 4a1s_A           60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA  116 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            46799999999999999998 55    357889999999999999999888877653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=81.89  E-value=3.8  Score=40.46  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=42.1

Q ss_pred             CcCCHHHHHHHHHHHhcc-----CC-ChH---HHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILL-----ES-DAK---ELRDYSILLYHCGLYEQSLQYLKFYQAQ  357 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL-----~P-dp~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~  357 (364)
                      ..|+|+.|+...++.|.+     .| ||.   ..-..|.+|.+.|+|++|...++.-++.
T Consensus       341 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          341 NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            468999999999988843     45 664   6889999999999999999888776654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=81.55  E-value=2.5  Score=38.49  Aligned_cols=55  Identities=11%  Similarity=0.002  Sum_probs=43.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChH-HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAK-ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~-e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|..+.++.+.+.| ++. .+-.+|.++.+.|.+++|...++.-++..|+.
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence            56788888888888888888 565 68888888888888888888888877766653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=81.38  E-value=0.1  Score=39.20  Aligned_cols=46  Identities=13%  Similarity=0.185  Sum_probs=38.0

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-------hHHHHHHhHHHHHcCChHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLESD-------AKELRDYSILLYHCGLYEQSLQYLK  352 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-------p~e~RDrGlLl~~lg~~~~A~~dL~  352 (364)
                      ..|+++.|+.++++.+.++|+       +.....+|.++..+|.+++|+.+++
T Consensus        50 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           50 KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            678999999999999999994       4467778888888888887766544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=81.24  E-value=3.1  Score=35.59  Aligned_cols=51  Identities=24%  Similarity=0.330  Sum_probs=43.6

Q ss_pred             CcCCHHHHHHHHHHHhccC--------CC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLE--------SD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQ  357 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~--------Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~  357 (364)
                      ..|+++.|+...++.+.+.        |+ ...+...|.+++..|++++|...++..++.
T Consensus        97 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3569999999999999883        42 457899999999999999999999998877

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=81.11  E-value=3.5  Score=36.00  Aligned_cols=51  Identities=16%  Similarity=0.212  Sum_probs=32.2

Q ss_pred             CcCCHHHHHHHHHHHhccCC-Ch----HHHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLILLES-DA----KELRDYSILLYHCGLYEQSLQYLKFYQAQ  357 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp----~e~RDrGlLl~~lg~~~~A~~dL~~fl~~  357 (364)
                      ..|+++.|+...++.+.+.| ++    ..+..+|.++++.|.+++|...++..++.
T Consensus        17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A           17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34567777777777776666 33    24556677777777777776666655544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=81.01  E-value=3.2  Score=36.24  Aligned_cols=54  Identities=13%  Similarity=0.067  Sum_probs=45.3

Q ss_pred             CcCCHHHHHHHHHHHhcc--------CC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILL--------ES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL--------~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.+        .| ....+...|.++.+.|++++|...++..++..++
T Consensus       165 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            356999999999999988        44 2457888999999999999999999999886543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=80.88  E-value=4.8  Score=39.95  Aligned_cols=51  Identities=16%  Similarity=-0.023  Sum_probs=41.7

Q ss_pred             CcCCHHHHHHHHHHHhc-----cCC-ChH---HHHHHhHHHHHcCChHHHHHHHHHHHHH
Q 017874          307 RFGDMRCALAACERLIL-----LES-DAK---ELRDYSILLYHCGLYEQSLQYLKFYQAQ  357 (364)
Q Consensus       307 r~~d~~~AL~a~ErLll-----L~P-dp~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~  357 (364)
                      ..|+|+.|+...++.|.     +-| +|.   ..-..|.+|.+.|.|++|...++.-++.
T Consensus       352 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          352 YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            46899999999998874     345 564   6889999999999999999888776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	364
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.95
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.87
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.77
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.67
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.59
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.56
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.56
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.39
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.28
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.18
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.09
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.02
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	95.96
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	95.76
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.64
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.53
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.34
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.09
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.01
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.79
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	94.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.26
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	93.07
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	91.77
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	91.34
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	90.13
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	88.47
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	88.23
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	86.92
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	86.71
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	86.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	86.21
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	86.09
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	84.92
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	84.75
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	83.26

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0015  Score=54.23  Aligned_cols=54  Identities=15%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .|+++.|+..+++.|.++| ++..+.-+|.+|+++|.|.+|+.+++..++.-|+.
T Consensus        75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            4599999999999999999 67789999999999999999999999999998864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.87  E-value=0.0023  Score=52.60  Aligned_cols=55  Identities=20%  Similarity=0.163  Sum_probs=50.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+..+++.|.++| ++.-+--+|.+|+++|.|++|+.+++..++.-|+.
T Consensus        89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1          89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            45699999999999999999 67788889999999999999999999999998874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.77  E-value=0.0022  Score=52.28  Aligned_cols=55  Identities=15%  Similarity=0.109  Sum_probs=50.7

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      .|+++.|+..++..|.++| +..-+.-+|.+|+.+|.|.+|+.+|+..++..|+.+
T Consensus        80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            4599999999999999999 567899999999999999999999999999999753

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.67  E-value=0.003  Score=52.04  Aligned_cols=55  Identities=13%  Similarity=0.085  Sum_probs=50.5

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      .|++..|+..++..+.++| ++.-+--+|.+|.++|.|++|..+++..++.-|+..
T Consensus        77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~  132 (168)
T d1kt1a1          77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  132 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            4599999999999999999 577889999999999999999999999999988764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.63  E-value=0.002  Score=49.72  Aligned_cols=55  Identities=11%  Similarity=-0.019  Sum_probs=47.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.|+++.|+.+.+..+.++| ++..+.-+|.++.+.|++.+|+..++..++..|+.
T Consensus        28 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          28 KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            56789999999999999999 57788889999999999999999999988888764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.002  Score=52.32  Aligned_cols=55  Identities=15%  Similarity=0.012  Sum_probs=32.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.|+++.|+.+.+..+.++| ++.-+..+|.++.++|++..|+++++..++..|++
T Consensus        22 ~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_          22 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc
Confidence            44566666666666666666 34555666666666666666666666666555543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0019  Score=50.27  Aligned_cols=55  Identities=15%  Similarity=0.006  Sum_probs=49.6

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+..+++.+.++| ++..+.-+|.++..+|.|++|+..++..++..|+.
T Consensus        49 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          49 KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             ccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            46799999999999999999 67888999999999999999999999999888875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0025  Score=49.52  Aligned_cols=55  Identities=15%  Similarity=0.044  Sum_probs=51.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.+..+.++| ++..+..+|.+|.++|.+.+|+.+++..++.-|+.
T Consensus        15 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   70 (117)
T d1elwa_          15 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW   70 (117)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch
Confidence            46799999999999999999 68899999999999999999999999999998875

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0025  Score=50.32  Aligned_cols=55  Identities=11%  Similarity=0.106  Sum_probs=50.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.|+|+.|+.+.++.+.++| ++..+.-+|.+|+++|.|++|+.+++.-++..|+.
T Consensus        16 ~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_          16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence            46799999999999999999 57788999999999999999999999999887765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.0025  Score=52.35  Aligned_cols=55  Identities=16%  Similarity=0.142  Sum_probs=46.4

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .-|+++.|+.++++.+.++|+ +.-+--+|.+|+++|+|++|+.+++..++..|+.
T Consensus        50 ~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          50 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            788899999999999999984 6667778999999999999999998888877754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0069  Score=49.49  Aligned_cols=55  Identities=15%  Similarity=-0.126  Sum_probs=50.7

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.++| ++..+.-+|.+|.++|.|+.|+.+++..++.-|+.
T Consensus        16 ~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~   71 (201)
T d2c2la1          16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc
Confidence            35699999999999999999 68899999999999999999999999999888874

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.09  E-value=0.005  Score=55.34  Aligned_cols=57  Identities=19%  Similarity=0.099  Sum_probs=53.7

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ++.|+++.|+.+.+..+..+| |+..+..+|.+|...|++++|+..|+..++..|+..
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            578999999999999999999 688999999999999999999999999999998764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0058  Score=51.84  Aligned_cols=54  Identities=19%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.++..+|++.+|...++..++..|+
T Consensus        83 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_          83 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence            56677777777777777777 4566667777777777777777777777766665

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0097  Score=50.10  Aligned_cols=54  Identities=22%  Similarity=0.142  Sum_probs=48.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|+++.|+.+.++.+.++| ++..+--+|++++++|+|++|+.+++.-++..+.
T Consensus        48 ~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          48 ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            46699999999999999999 6888999999999999999999999988776543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0087  Score=52.21  Aligned_cols=54  Identities=20%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .|+++.|+.+++.++..+| ++..+..+|.++++.|+|++|+..++..++..|++
T Consensus        12 ~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   66 (388)
T d1w3ba_          12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL   66 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            3455666666666555555 34455555666666666666666655555555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.012  Score=47.41  Aligned_cols=55  Identities=16%  Similarity=0.013  Sum_probs=50.8

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+.+.++.+.++| ++.-+--+|.++..+|+|.+|+.+++..+..-|+.
T Consensus        56 ~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          56 RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  111 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            56899999999999999999 67788999999999999999999999999988764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.53  E-value=0.02  Score=47.99  Aligned_cols=53  Identities=11%  Similarity=0.066  Sum_probs=48.4

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      ..|+++.|+.++++++.++| +...++.++.+|+++|++.+|++.++.+.+.++
T Consensus        79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            46799999999999999999 678999999999999999999999999876653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.015  Score=49.12  Aligned_cols=56  Identities=9%  Similarity=0.056  Sum_probs=51.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +.|+++.|+...++.+.++| ++.-+.-+|.++.++|.+++|+..++..++..|+.+
T Consensus        49 ~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  105 (259)
T d1xnfa_          49 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  105 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh
Confidence            56799999999999999999 578889999999999999999999999999998764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.017  Score=50.45  Aligned_cols=56  Identities=13%  Similarity=0.009  Sum_probs=51.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+.+.++.+.++| ++.-+..+|.+|.+.|++++|+..++..++..|++.
T Consensus       218 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         218 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence            67899999999999999999 577899999999999999999999999999988764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.013  Score=46.15  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=48.5

Q ss_pred             CcCCHHHHHHHHHHHhccCCCh---HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLESDA---KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pdp---~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.+|+++|+...+.++..+|.|   .-+--.|++|+++|+|++|+..++..++.-|+.
T Consensus        48 ~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          48 YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             chHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC
Confidence            3568889999999999999843   256789999999999999999999999999975

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.01  E-value=0.013  Score=44.92  Aligned_cols=50  Identities=12%  Similarity=0.029  Sum_probs=46.4

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHH
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ  355 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl  355 (364)
                      .+.|+++.|+.+.++.+.++| ++..+-.+|.+|...|.+.+|++.|+.|+
T Consensus        61 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          61 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            367799999999999999999 57889999999999999999999999986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.027  Score=49.15  Aligned_cols=52  Identities=15%  Similarity=0.094  Sum_probs=24.7

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      .|+++.|+.+.++.+.++| ++..+..+|.++...|.+.+|...++..+...|
T Consensus        66 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  118 (323)
T d1fcha_          66 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP  118 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred             cCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhcc
Confidence            4444455555554444444 234444444444445555554444444444433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.025  Score=49.08  Aligned_cols=55  Identities=13%  Similarity=0.039  Sum_probs=50.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...++.+.++| ++..+..+|.+|.+.|++++|+..++..++..|+.
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            67899999999999999999 57788899999999999999999999999988875

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.064  Score=39.69  Aligned_cols=56  Identities=14%  Similarity=-0.029  Sum_probs=47.9

Q ss_pred             CcCCHHHHHHHHHHHhccCC-Ch-------HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DA-------KELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp-------~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +.||++.|+...+..+.+.| ++       .-..-.|..++++|.|++|+..++..++..|++.
T Consensus        17 ~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_          17 TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            57799999999999988876 22       2356689999999999999999999999999874

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.077  Score=47.58  Aligned_cols=54  Identities=11%  Similarity=-0.012  Sum_probs=43.8

Q ss_pred             cCCHHHHHHHHHHHhccCCC-hHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          308 FGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .++++.|+..++..+.++|+ ...+..||.++.++|++.+|+..++..++.-|+.
T Consensus        91 ~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1          91 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             CcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc
Confidence            34788888888888888884 6678888888888888888888888888877764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.15  Score=42.41  Aligned_cols=54  Identities=7%  Similarity=-0.034  Sum_probs=46.8

Q ss_pred             CcCCHHHHHHHHHHHhccCCChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|||+.|+.+.+.+  .+|++.-+-.+|.+|+.+|.++.|+.+++.-++.-|+.+
T Consensus        17 ~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~   70 (192)
T d1hh8a_          17 DKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA   70 (192)
T ss_dssp             HTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh
Confidence            467999999998863  345777788999999999999999999999999988864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.12  Score=46.34  Aligned_cols=56  Identities=11%  Similarity=0.115  Sum_probs=50.4

Q ss_pred             cCcCCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .+.|+++.|+...+..+.++| +...+--+|.++.++|.+++|+++++..++.-|+.
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            367899999999999999999 56789999999999999999999999999988764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.13  E-value=0.21  Score=39.86  Aligned_cols=54  Identities=17%  Similarity=0.128  Sum_probs=47.1

Q ss_pred             cCCHHHHHHHHHHHhccCC-ChH-HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          308 FGDMRCALAACERLILLES-DAK-ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       308 ~~d~~~AL~a~ErLllL~P-dp~-e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      .+|+++++.+.+.++..+| +.. -+--.|+.||++|.|..|+..++..++.-|+.
T Consensus        51 ~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          51 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            3488999999999998887 443 45688999999999999999999999999975

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.47  E-value=0.33  Score=38.39  Aligned_cols=52  Identities=13%  Similarity=0.089  Sum_probs=37.8

Q ss_pred             CHHHHHHHHHHHhc-------cCCC--hH---HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          310 DMRCALAACERLIL-------LESD--AK---ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       310 d~~~AL~a~ErLll-------L~Pd--p~---e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +++.|+..++..+.       ..++  +.   -+.-+|.+|..+|++++|+.+++..++..|..
T Consensus        70 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          70 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            55555555555554       4442  11   34668999999999999999999999988754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=88.23  E-value=0.39  Score=40.31  Aligned_cols=54  Identities=11%  Similarity=-0.109  Sum_probs=45.7

Q ss_pred             CcCCHHHHHHHHHHHhccCCC-hH-----HHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          307 RFGDMRCALAACERLILLESD-AK-----ELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~Pd-p~-----e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ..|++++|+...+..+.+.|+ +.     .....|.+++..|++++|+..++..++..+.
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            578999999999999999993 32     4667899999999999999999988776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.92  E-value=0.21  Score=39.60  Aligned_cols=53  Identities=9%  Similarity=-0.041  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHc----------CChHHHHHHHHHHHHHhcCc
Q 017874          309 GDMRCALAACERLILLES-DAKELRDYSILLYHC----------GLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       309 ~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~l----------g~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.|+.|+.+.|..+.++| ++.-+--+|.+++.+          +++++|+..++.-++.-|+.
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~   74 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh
Confidence            479999999999999999 677889999999865          44577888888888887765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.71  E-value=0.3  Score=39.46  Aligned_cols=56  Identities=7%  Similarity=0.048  Sum_probs=46.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChH---------------HHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILLES-DAK---------------ELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~---------------e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      +.|+++.|+.+.+..+.+.| ++.               ..-.+|.+|+++|.|++|+.+++.-++.-|++.
T Consensus        25 ~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~   96 (170)
T d1p5qa1          25 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE   96 (170)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch
Confidence            46799999999999998877 321               123589999999999999999999999999763

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.41  E-value=0.3  Score=38.70  Aligned_cols=54  Identities=7%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHhccCC-ChHHHHHHhHHHHHcCC-----------hHHHHHHHHHHHHHhcCcC
Q 017874          309 GDMRCALAACERLILLES-DAKELRDYSILLYHCGL-----------YEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       309 ~d~~~AL~a~ErLllL~P-dp~e~RDrGlLl~~lg~-----------~~~A~~dL~~fl~~~~~~~  362 (364)
                      +.++.|+...++.+.++| ++.-+--+|.+|..+|.           |..|.+.++.-++.-|+..
T Consensus        55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~  120 (145)
T d1zu2a1          55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  120 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH
Confidence            477899999999999999 57778889999988764           6889999999999988764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=86.21  E-value=0.58  Score=36.90  Aligned_cols=55  Identities=13%  Similarity=0.094  Sum_probs=46.2

Q ss_pred             cCcCCHHHHHHHHHHHhccCCC-h------------HHHHHHhHHHHHcCChHHHHHHHHHHHHHhcC
Q 017874          306 VRFGDMRCALAACERLILLESD-A------------KELRDYSILLYHCGLYEQSLQYLKFYQAQWYN  360 (364)
Q Consensus       306 lr~~d~~~AL~a~ErLllL~Pd-p------------~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~  360 (364)
                      ++.|+++.|+...+..+.+.|+ |            .-+.-+|.+|..+|.|++|+.+++.-+...+.
T Consensus        20 ~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1          20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            4678999999999999999883 3            13557899999999999999999998877653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.09  E-value=0.3  Score=37.54  Aligned_cols=53  Identities=13%  Similarity=0.229  Sum_probs=42.5

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChHHH-------HHHhHHHHHcCChHHHHHHHHHHHHHhc
Q 017874          307 RFGDMRCALAACERLILLES-DAKEL-------RDYSILLYHCGLYEQSLQYLKFYQAQWY  359 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~e~-------RDrGlLl~~lg~~~~A~~dL~~fl~~~~  359 (364)
                      ..|+++.|+..+++.+.++| ++..+       -..|.++..++.+.+|+..++..+..-+
T Consensus        50 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          50 EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            56799999999999999998 54333       3466777888899999999988876544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.92  E-value=1.1  Score=35.19  Aligned_cols=55  Identities=5%  Similarity=-0.110  Sum_probs=45.0

Q ss_pred             CcCCHHHHHHHHHHHhccCC-Ch-----HH-----------HHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DA-----KE-----------LRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp-----~e-----------~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      ..|+++.|+...+..+.+.| ..     ..           .-.+|.+|+++|.|.+|+.+++.-++..|+.
T Consensus        29 ~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~  100 (153)
T d2fbna1          29 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN  100 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh
Confidence            56899999999998887666 21     11           1248999999999999999999999998875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=84.75  E-value=0.41  Score=38.36  Aligned_cols=55  Identities=5%  Similarity=-0.003  Sum_probs=44.3

Q ss_pred             CcCCHHHHHHHHHHHhccCC-ChH---H------------HHHHhHHHHHcCChHHHHHHHHHHHHHhcCc
Q 017874          307 RFGDMRCALAACERLILLES-DAK---E------------LRDYSILLYHCGLYEQSLQYLKFYQAQWYNI  361 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL~P-dp~---e------------~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~  361 (364)
                      +.|+|..|+...+..+.+.| .+.   +            .-.+|.+|+++|.|.+|+.+++..++..|+.
T Consensus        27 ~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~   97 (168)
T d1kt1a1          27 KGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN   97 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence            57799999999988876655 211   1            2248999999999999999999999998875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.26  E-value=0.51  Score=37.59  Aligned_cols=56  Identities=2%  Similarity=-0.091  Sum_probs=42.7

Q ss_pred             CcCCHHHHHHHHHHHhcc----------------CC-ChHHHHHHhHHHHHcCChHHHHHHHHHHHHHhcCcC
Q 017874          307 RFGDMRCALAACERLILL----------------ES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQWYNIS  362 (364)
Q Consensus       307 r~~d~~~AL~a~ErLllL----------------~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~fl~~~~~~~  362 (364)
                      ..|+++.|+...+..+.+                .| ....+..+|.++.++|.|++|+.+++..++.-|+.+
T Consensus        39 ~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  111 (169)
T d1ihga1          39 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT  111 (169)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh
Confidence            345777777777666543                34 233566789999999999999999999999888763