Citrus Sinensis ID: 017877

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAWHHYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKLPSVVPPPPSGDYGESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDEDYCRRPHDRDVGECSSSMSGYQHHFHHHQN
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccccccccccccccEEEEccccccccccHHHHccccccccccccccccccccccccHHHHHHHcccEEcccccccccEEEccccEEEEcccccccHHHHHHcccccccccHHHHHHHHccccEEEEEEEcccEEEEccccHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccccccEEEEcccEEEEEcccccccccHHHHHHcccccccHHHHHHHHcccEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccHHHcHHHHHHcHEcccccccHcccccccccccccccccccHHHHHcccccc
Coil and Loop (DISEMBL)
MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRilprnypppkwdgqgaydrsrgnrrnwILVWEDGFCNFAAStaaeinsgdcpsssvygncefqhyqglqpeLFFKMSHEIYNYGEGLIGKVaadhshkwiykepndqeiNFLSAWhnaadshprtwEAQFQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFsyiesipgvllphpsssaypfkidgyhapaeawhhyqiqnplaaalpldhhhhqyydhfnqpssamkitpSMSSLEALLSklpsvvppppsgdygesqpplmspfvsaahqrpmEFIQAEKvakedtdedycrrphdrdvgecsssmsgyqhhfhhhqn
Flexible Loop (DISEMBL)
MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLgavnkvvedLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAWHHYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKLPSVVPPPPSGDYGESQPPLMSPFVSAAHQRPMEFIQAekvakedtdedycRRPHDRDVGECSssmsgyqhhFHHHQN
Low Complexity Region (SEG)
MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAWHHYQIQNplaaalpldhhhhQYYDHFNQPSSAMKITPSMSSLEALLSKLpsvvppppsGDYGESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDEDYCRRPHDRDVGECSSSMSGYQHHFHHHQN
Disordered region (IsUnstruct)
*******LAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAWHHYQIQNPLA********************************************************************************************************************
Disordered Region (DISOPRED)
************LLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDR*RGNRRNWILVWEDGFCNFA***************************GLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIES****************************************************************************************************************************DYCRR*************************
Disordered Region (DISEMBL)
MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAWHHYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKLPSVVP*********SQPPLMSPFVSAAHQRPMEFIQAEK************RPHDRDVGECSSSMSGYQHHFHHHQN
Disordered Region (DISPRO)
***HLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAA********************YQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLL*****************************************************A*KI*PSMSSLEALLSKLPSVVPPPP*********PLMSPFVSAAHQRPMEFIQAEKVAKEDT********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAWHHYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKLPSVVPPPPSGDYGESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDEDYCRRPHDRDVGECSSSMSGYQHHFHHHQN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
P0C7P8	734	Transcription factor EMB1	no	no	0.387	0.192	0.303	1e-15
Q58G01	720	Transcription factor bHLH	no	no	0.384	0.194	0.307	2e-13
Q9XIN0	650	Transcription factor LHW	no	no	0.456	0.255	0.278	3e-11
O23090	423	Transcription factor bHLH	no	no	0.423	0.364	0.256	6e-05

>sp|P0C7P8|LHWL1_ARATH Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 92/211 (43%), Gaps = 70/211 (33%)

Query: 10  MTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWED 69
           M + LQ  LRS+C   N+ W YAVFW++   N+  P                  +L  ED
Sbjct: 1   MGYTLQQILRSIC--SNTDWNYAVFWKL---NHHSP-----------------MVLTLED 38

Query: 70  GFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELF--------------FKMSHE 115
            +C                           H +GL PE                 KMS+ 
Sbjct: 39  VYC-------------------------VNHERGLMPESLHGGRHAHDPLGLAVAKMSYH 73

Query: 116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIAL 175
           +++ GEG++G+VA    H+WI+ E       +L+  H+    H   WE+Q  +GIKTI +
Sbjct: 74  VHSLGEGIVGQVAISGQHQWIFSE-------YLNDSHSTLQVH-NGWESQISAGIKTILI 125

Query: 176 IAVRE-GVVQLGAVNKVVEDLNYVVLLRKKF 205
           +AV   GVVQLG++ KV ED   V  +R  F
Sbjct: 126 VAVGSCGVVQLGSLCKVEEDPALVTHIRHLF 156

Transcription factor that may regulate root development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155 OS=Arabidopsis thaliana GN=BHLH155 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 55/195 (28%)

Query: 15  QHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNF 74
           Q  L+S C   N+ W YAVFW++                   RG+R   +L  ED + + 
Sbjct: 6   QEILKSFCF--NTDWDYAVFWQL-----------------NHRGSR--MVLTLEDAYYDH 44

Query: 75  AASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFF---KMSHEIYNYGEGLIGKVAADH 131
             +                      +  G    L     KMS+ +Y+ GEG++G+VA   
Sbjct: 45  HGT----------------------NMHGAHDPLGLAVAKMSYHVYSLGEGIVGQVAVSG 82

Query: 132 SHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE-GVVQLGAVNK 190
            H+W++ E N    N    +HN        WE+Q  +GIKTI ++AV   GVVQLG++ K
Sbjct: 83  EHQWVFPE-NYNNCNSAFEFHNV-------WESQISAGIKTILVVAVGPCGVVQLGSLCK 134

Query: 191 VVEDLNYVVLLRKKF 205
           V ED+N+V  +R  F
Sbjct: 135 VNEDVNFVNHIRHLF 149

Transcription factor that may regulate root development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIN0|LHW_ARATH Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 46/212 (21%)

Query: 10  MTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWED 69
           M  LL+  LRS+C+  N+QW YAVFW+I                    G + + +L+WE+
Sbjct: 1   MGVLLREALRSMCV--NNQWSYAVFWKI--------------------GCQNSSLLIWEE 38

Query: 70  GFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAA 129
            +    +S+      G        GN   +  Q L   +   +++ I   GEGL+G+ A 
Sbjct: 39  CYNETESSSNPRRLCG--LGVDTQGN---EKVQLLTNRMM--LNNRIILVGEGLVGRAAF 91

Query: 130 DHSHKWIYKEPNDQEINFLSAWHNAADSHP----RTWEAQFQSGIKTIALI-AVREGVVQ 184
              H+WI     ++            D HP         QF +GI+T+A+   V  GVVQ
Sbjct: 92  TGHHQWILANSFNR------------DVHPPEVINEMLLQFSAGIQTVAVFPVVPHGVVQ 139

Query: 185 LGAVNKVVEDLNYVVLLRKKFSYIESIPGVLL 216
           LG+   ++E+L +V  ++     +  +PG LL
Sbjct: 140 LGSSLPIMENLGFVNDVKGLILQLGCVPGALL 171

Transcription activator that regulates root development; promotes the production of stele cells in roots. Coordinately controls the number of all vascular cell types by regulating the size of the pool of cells from which they arise.

Arabidopsis thaliana (taxid: 3702)

>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 41/195 (21%)

Query: 13  LLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDG-F 71
           +LQ  LR +      +W Y +FW+ +        +D Q   DRS        LVW DG F
Sbjct: 34  VLQQKLRFVVETSPDRWAYVIFWQKM--------FDDQS--DRS-------YLVWVDGHF 76

Query: 72  CNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLI-GKVAAD 130
           C    + + E    +  ++S+   CE     G   ELF+  S     YGE     K  +D
Sbjct: 77  CGNKNNNSQE----NYTTNSI--ECELMMDGGDDLELFYAASF----YGEDRSPRKEVSD 126

Query: 131 HSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLGAVNK 190
            S  W+       E+ F         ++ R  EA F  G+ T+  I +  G+++LG+   
Sbjct: 127 ESLVWL---TGPDELRF--------SNYERAKEAGFH-GVHTLVSIPINNGIIELGSSES 174

Query: 191 VVEDLNYVVLLRKKF 205
           ++++ N++  ++  F
Sbjct: 175 IIQNRNFINRVKSIF 189

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
255560027	366	conserved hypothetical protein [Ricinus	0.953	0.948	0.773	1e-156
224108141	366	predicted protein [Populus trichocarpa]	0.914	0.909	0.775	1e-150
388491326	366	unknown [Lotus japonicus]	0.923	0.918	0.764	1e-147
356497894	376	PREDICTED: uncharacterized protein LOC10	0.945	0.914	0.750	1e-146
225424721	346	PREDICTED: uncharacterized protein LOC10	0.914	0.962	0.757	1e-145
357485981	362	Basic helix-loop-helix protein, putative	0.939	0.944	0.745	1e-144
255637625	385	unknown [Glycine max]	0.903	0.854	0.713	1e-141
356501548	385	PREDICTED: uncharacterized protein LOC10	0.909	0.859	0.720	1e-141
147780838	346	hypothetical protein VITISV_035287 [Viti	0.876	0.921	0.699	1e-130
18406603	386	serine/threonine-protein kinase WNK (Wit	0.796	0.751	0.767	1e-127

>gi|255560027|ref|XP_002521032.1| conserved hypothetical protein [Ricinus communis] gi|223539869|gb|EEF41449.1| conserved hypothetical protein [Ricinus communis]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 284/367 (77%), Positives = 309/367 (84%), Gaps = 20/367 (5%)

Query: 1   MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60
           MEEHL+PLA+THLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR
Sbjct: 1   MEEHLSPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60

Query: 61  RNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYG 120
           RNWILVWEDGFCNF+AS AAEINSGDCPSSS YGNCEFQ YQGLQPELFFKMSHEIYNYG
Sbjct: 61  RNWILVWEDGFCNFSAS-AAEINSGDCPSSSAYGNCEFQPYQGLQPELFFKMSHEIYNYG 119

Query: 121 EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE 180
           EGLIGKVAADHSHKWIYKEPNDQEINFLS+WHN+ADSHPRTWEAQFQSGIKTIALIAVRE
Sbjct: 120 EGLIGKVAADHSHKWIYKEPNDQEINFLSSWHNSADSHPRTWEAQFQSGIKTIALIAVRE 179

Query: 181 GVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAWHH 240
           GVVQLGAV+KV+EDL+YVVLLRKKFSYIESIPGVLLPHPSSSA+P+K+DGY  P ++WH+
Sbjct: 180 GVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAFPYKVDGYGTP-DSWHY 238

Query: 241 YQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKLPSVVPPPPSGDYG 300
                P     P +++H    DHFNQ     KITPSMSSLEALLSKLPSVVPP P   Y 
Sbjct: 239 QGTIAP-----PTEYYH----DHFNQ--VPFKITPSMSSLEALLSKLPSVVPPQPGSGYC 287

Query: 301 ESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDEDYCRRPHDRDVGECSSSMSGY---QH 357
            ++    S ++S   QRP  F+  EKVAKE+ DEDY R  H  D+GE SSSMS Y   Q 
Sbjct: 288 TTESQPQSQYLST--QRPAAFMGMEKVAKEEIDEDYNRTEH--DMGETSSSMSAYRRQQF 343

Query: 358 HFHHHQN 364
           H HH Q+
Sbjct: 344 HQHHGQD 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108141|ref|XP_002314734.1| predicted protein [Populus trichocarpa] gi|222863774|gb|EEF00905.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/361 (77%), Positives = 301/361 (83%), Gaps = 28/361 (7%)

Query: 1   MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60
           MEEHL+PLA+THLLQHTLRSLC+HENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR
Sbjct: 1   MEEHLSPLAVTHLLQHTLRSLCVHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60

Query: 61  RNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYG 120
           RNWILVWEDGFCNFAASTA EINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYG
Sbjct: 61  RNWILVWEDGFCNFAASTA-EINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYG 119

Query: 121 EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE 180
           EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHN ADS PRTWEAQFQSGIKTIALIAVRE
Sbjct: 120 EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNTADSQPRTWEAQFQSGIKTIALIAVRE 179

Query: 181 GVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAWHH 240
           GVVQLGAV+KV+EDL+YVVLLRKKFSYIESIPGVLLPHPSSSAYP+K+DGY   ++ W H
Sbjct: 180 GVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYKVDGYGTVSDTW-H 238

Query: 241 YQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKLPSVV-------PP 293
           YQ  N +A   P +     +YDHFNQ     KITPSMSSLEALLSKLPSVV         
Sbjct: 239 YQGSN-IAPQSPTE-----FYDHFNQ--VPFKITPSMSSLEALLSKLPSVVPPPQPAAAH 290

Query: 294 PPSGDYGESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDEDYCRRPHDRDVGECSSSMS 353
             +  Y +SQ    S +VS+  QR M     EKVAKE+ DE+Y  R   +DVGE SSS+S
Sbjct: 291 HQAAGYCDSQ----SHYVSSI-QRGM-----EKVAKEEIDEEYT-RADQQDVGESSSSLS 339

Query: 354 G 354
            
Sbjct: 340 A 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491326|gb|AFK33729.1| unknown [Lotus japonicus]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 272/356 (76%), Positives = 297/356 (83%), Gaps = 20/356 (5%)

Query: 1   MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60
           MEEHL PLA+THLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKW+GQGAYDRSRGNR
Sbjct: 1   MEEHLTPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWEGQGAYDRSRGNR 60

Query: 61  RNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYG 120
           RNWILVWEDGFCNFAAS A E+NSGDCP+SSVYGNCEFQ YQGLQPELFFKMSHEIYNYG
Sbjct: 61  RNWILVWEDGFCNFAASAAPEVNSGDCPTSSVYGNCEFQPYQGLQPELFFKMSHEIYNYG 120

Query: 121 EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE 180
           EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHN+ADSHPRTWEAQF SGIKTIALIAVRE
Sbjct: 121 EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNSADSHPRTWEAQFLSGIKTIALIAVRE 180

Query: 181 GVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAWHH 240
           GVVQLGAV+KV+EDL+YVVLLRKKFSYIESIPGVLLPHPSSSAYP+K++GY  P E WH 
Sbjct: 181 GVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYKVEGY-GPPEQWH- 238

Query: 241 YQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKLPSVVPPPPSGDYG 300
              Q  LA    L      Y +H+N P   +KITPSMSSLEALLSKLPSV+PP       
Sbjct: 239 --FQGNLAPPAEL------YNEHYNLP---LKITPSMSSLEALLSKLPSVIPPHLPPPTQ 287

Query: 301 ESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDEDYCRRPHDRDVGECSSSM-SGY 355
             Q       V  + QRP+EF+  +KVAKE+ DE+   RP + ++GE SSSM +GY
Sbjct: 288 PPQ-----SHVLPSQQRPLEFMGMQKVAKEELDEEEVYRP-ELEIGESSSSMPAGY 337

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497894|ref|XP_003517791.1| PREDICTED: uncharacterized protein LOC100816910 [Glycine max]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/357 (75%), Positives = 295/357 (82%), Gaps = 13/357 (3%)

Query: 1   MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60
           MEEHL PLA+THLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKW+GQGAYDRSRGNR
Sbjct: 1   MEEHLTPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWEGQGAYDRSRGNR 60

Query: 61  RNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYG 120
           RNWILVWEDGFCNFAAS A E+NSGDC +  VYGNCEFQ YQGLQPELFFKMSHEIYNYG
Sbjct: 61  RNWILVWEDGFCNFAASAAPEVNSGDCSTPPVYGNCEFQPYQGLQPELFFKMSHEIYNYG 120

Query: 121 EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE 180
           EGLIGKVAADHSHKWI KEPNDQEINFLSAWHN+ADSHPRTWEAQF SGIKTIALIAVRE
Sbjct: 121 EGLIGKVAADHSHKWINKEPNDQEINFLSAWHNSADSHPRTWEAQFLSGIKTIALIAVRE 180

Query: 181 GVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKID--GYHAPAEAW 238
           GVVQLGAV+KV+EDL+YVVLLRKKFSYIESIPGVLLPHPSSSAYP+KI+  GY AP E W
Sbjct: 181 GVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYKIEGGGYGAP-EQW 239

Query: 239 HHYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKLPSVVPPPPSGD 298
           H+    N    A P     + ++ HFN P   +KITPSMSSLEALLSKLPSVVPP  +  
Sbjct: 240 HYQGGNNHHHLASPQQTELYDHHGHFNLP---LKITPSMSSLEALLSKLPSVVPPTTT-- 294

Query: 299 YGESQPPLMSPFVSAAHQRPMEFIQA-EKVAKEDTDEDYCRRPHDRDVGECSSSMSG 354
               Q PL+        +RP+EFI   +KVAKE+ +++   RP + D+GE SSS+ G
Sbjct: 295 ---QQQPLLPSNSQQQQRRPLEFIMGMQKVAKEELEQEEVYRP-ELDIGESSSSLPG 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424721|ref|XP_002265760.1| PREDICTED: uncharacterized protein LOC100258629 [Vitis vinifera]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 272/359 (75%), Positives = 298/359 (83%), Gaps = 26/359 (7%)

Query: 1   MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQ-GAYDRSRGN 59
           MEEHL PLA+THLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQ GAYDRSRGN
Sbjct: 1   MEEHLGPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQAGAYDRSRGN 60

Query: 60  RRNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNY 119
           RRNWILVWEDGFCNFAASTA EINS DC  SSVYGNCEFQH+QGLQPELFFKMSHEIYNY
Sbjct: 61  RRNWILVWEDGFCNFAASTA-EINSSDCVGSSVYGNCEFQHFQGLQPELFFKMSHEIYNY 119

Query: 120 GEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR 179
           GEGLIGKVAAD SHKW+YKEPN+QEINFLSAWHN+ADS+PRTWEAQFQSG+KTIALIAVR
Sbjct: 120 GEGLIGKVAADQSHKWVYKEPNEQEINFLSAWHNSADSYPRTWEAQFQSGVKTIALIAVR 179

Query: 180 EGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAWH 239
           EGV+QLGAV+KV+EDL+YVVLLRKKF YIESIPGVLLPHPS S +PFK+DGY AP +AWH
Sbjct: 180 EGVIQLGAVHKVIEDLSYVVLLRKKFGYIESIPGVLLPHPSPSPFPFKVDGYGAP-DAWH 238

Query: 240 HYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKLPSVVP--PPPSG 297
                 P            ++YDHFNQP   MKITPSMSSLEALLSKLPSVVP    P+ 
Sbjct: 239 FQGTPAPAP----------EFYDHFNQP---MKITPSMSSLEALLSKLPSVVPVSSQPTS 285

Query: 298 DYGESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDEDYCRRPHDRDVGECSSSMSGYQ 356
            Y ESQP  +S       QRP+E +  EKV KE+ D+   R  H++DVGE SSS+S Y+
Sbjct: 286 GYCESQPQFLS------SQRPLELLGMEKVTKEEIDDQEYR--HEKDVGESSSSISAYR 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485981|ref|XP_003613278.1| Basic helix-loop-helix protein, putative [Medicago truncatula] gi|355514613|gb|AES96236.1| Basic helix-loop-helix protein, putative [Medicago truncatula]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/366 (74%), Positives = 294/366 (80%), Gaps = 24/366 (6%)

Query: 1   MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60
           MEEHL PLA+THLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKW+GQGAYDRSRGNR
Sbjct: 1   MEEHLTPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWEGQGAYDRSRGNR 60

Query: 61  RNWILVWEDGFCNFAASTAAEINSGDCPSSS-VYGNCEF-QHYQGLQPELFFKMSHEIYN 118
           RNWILVWEDGFCNFAAS A EIN+GDCPSSS VYGNCE  Q YQGLQPELFFKMSHEIYN
Sbjct: 61  RNWILVWEDGFCNFAASAAPEINTGDCPSSSSVYGNCELIQPYQGLQPELFFKMSHEIYN 120

Query: 119 YGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAV 178
           YGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHN+ADSHPRTWEAQF SGIKTIALIAV
Sbjct: 121 YGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNSADSHPRTWEAQFLSGIKTIALIAV 180

Query: 179 REGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEAW 238
           REGVVQLGAV+KV+EDL+YVVLLRKKFSYIESIPGVLLPHPSSSAYP     Y  PAE W
Sbjct: 181 REGVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYP-----YGNPAEQW 235

Query: 239 HHYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKLPSVVPPPPSGD 298
           H++Q      +  P   +   Y++HFN     MK+TPSMSSLEALLSKLPSVV       
Sbjct: 236 HNFQ-----GSIAPQHQNDQLYHEHFNN-IMPMKVTPSMSSLEALLSKLPSVV------- 282

Query: 299 YGESQPPLMSPFVSAAHQRPMEFI-QAEKVAKE--DTDEDYCRRPHDRDVGECSSSMSGY 355
             +         ++   QR +EF  + +KVAKE  D +ED   RP   DVGE SSSM GY
Sbjct: 283 PPQQIQTQTQHVLAPQQQRALEFTGRMQKVAKEELDNEEDEVYRPEQLDVGESSSSMPGY 342

Query: 356 -QHHFH 360
            QHHFH
Sbjct: 343 HQHHFH 348

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637625|gb|ACU19137.1| unknown [Glycine max]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/367 (71%), Positives = 287/367 (78%), Gaps = 38/367 (10%)

Query: 1   MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60
           MEEHL PLA+THLLQHTLRSLC HENSQWVYAVFWRILPRNYPPPKW+GQGAYDRSRGNR
Sbjct: 1   MEEHLTPLAVTHLLQHTLRSLCSHENSQWVYAVFWRILPRNYPPPKWEGQGAYDRSRGNR 60

Query: 61  RNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYG 120
           RNWILVWEDGFCNFAAS A EINSGDC +   YGNCEFQ YQGLQPELFFKMSHEIYNYG
Sbjct: 61  RNWILVWEDGFCNFAASAAPEINSGDCSTPPAYGNCEFQPYQGLQPELFFKMSHEIYNYG 120

Query: 121 EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE 180
           EGLIGKVAADHSHKWIYKEPNDQEINFL+AWHN+ADSHPRTWEAQF SGIKTIALIAVRE
Sbjct: 121 EGLIGKVAADHSHKWIYKEPNDQEINFLTAWHNSADSHPRTWEAQFLSGIKTIALIAVRE 180

Query: 181 GVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKID--GYHAPAEAW 238
           GVVQLGAV+ V+EDL+YVVLLRKKFSYIESIPGVLLPHPSSSAYP+K++  G +   E W
Sbjct: 181 GVVQLGAVHNVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYKVEGGGGYGALEQW 240

Query: 239 HHYQIQNPLAAALPLDHHHH---------QYYD----HFNQPSSAMKITPSMSSLEALLS 285
            H+         +  +HHHH         + YD    HFN P   +KITPSMSSLEALLS
Sbjct: 241 QHFH-------GISNNHHHHRLSSSPQQAELYDHHAGHFNLP---LKITPSMSSLEALLS 290

Query: 286 KLPSVVPPPPSGDYGESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDEDYCRRPHDRDV 345
           KLPSVVP           P           QRP+EF+  +KVAKE+ +E+  R   + D+
Sbjct: 291 KLPSVVP-----------PSTQQQQSLLPSQRPLEFMGMQKVAKEELEEEVYRP--ELDI 337

Query: 346 GECSSSM 352
           GE SSSM
Sbjct: 338 GESSSSM 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501548|ref|XP_003519586.1| PREDICTED: uncharacterized protein LOC100799671 [Glycine max]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/365 (72%), Positives = 286/365 (78%), Gaps = 34/365 (9%)

Query: 1   MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60
           MEEHL PLA+THLLQHTLRSLC HENSQWVYAVFWRILPRNYPPPKW+GQGAYDRSRGNR
Sbjct: 1   MEEHLTPLAVTHLLQHTLRSLCSHENSQWVYAVFWRILPRNYPPPKWEGQGAYDRSRGNR 60

Query: 61  RNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYG 120
           RNWILVWEDGFCNFAAS A EINSGDC +   YGNCEFQ YQGLQPELFFKMSHEIYNYG
Sbjct: 61  RNWILVWEDGFCNFAASAAPEINSGDCSTPPAYGNCEFQPYQGLQPELFFKMSHEIYNYG 120

Query: 121 EGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE 180
           EGLIGKVAADHSHKWIYKEPNDQEINFL+AWHN+ADSHPRTWEAQF SGIKTIALIAVRE
Sbjct: 121 EGLIGKVAADHSHKWIYKEPNDQEINFLTAWHNSADSHPRTWEAQFLSGIKTIALIAVRE 180

Query: 181 GVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKID--GYHAPAEAW 238
           GVVQLGAV+KV+EDL+YVVLLRKKFSYIESIPGVLLPHPSSSAYP+K++  G +   E W
Sbjct: 181 GVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYKVEGGGGYGALEQW 240

Query: 239 HHY-----------QIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLSKL 287
            H+              +P  A L  DHH      HFN P   +KITPSMSSLEALLSKL
Sbjct: 241 QHFHGISNNHHHHHLSSSPQQAEL-YDHHA----GHFNLP---LKITPSMSSLEALLSKL 292

Query: 288 PSVVPPPPSGDYGESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDEDYCRRPHDRDVGE 347
           PSVVP           P           QRP+EF+  +KVAKE+ +E+  R   + D+GE
Sbjct: 293 PSVVP-----------PSTQQQQSLLPSQRPLEFMGMQKVAKEELEEEVYRP--ELDIGE 339

Query: 348 CSSSM 352
            SSSM
Sbjct: 340 SSSSM 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780838|emb|CAN65927.1| hypothetical protein VITISV_035287 [Vitis vinifera]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 261/373 (69%), Positives = 284/373 (76%), Gaps = 54/373 (14%)

Query: 1   MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQ-GAYDRSRGN 59
           MEEHL PLA+THLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQ GAYDRSRGN
Sbjct: 1   MEEHLGPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQAGAYDRSRGN 60

Query: 60  RRNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNY 119
           RRNWILVWEDGFCNFAAST AEINS DC  SSVYGNCEFQH+QGLQPELFFKMSHEIYNY
Sbjct: 61  RRNWILVWEDGFCNFAAST-AEINSSDCVGSSVYGNCEFQHFQGLQPELFFKMSHEIYNY 119

Query: 120 GEG--------------LIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQ 165
           GEG              LIGKVAAD SHKW+YKEPN+QEINFLSAWHN+ADS        
Sbjct: 120 GEGDFTSNRRRFNPVNSLIGKVAADQSHKWVYKEPNEQEINFLSAWHNSADS-------- 171

Query: 166 FQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYP 225
                 TIALIAVREGV+QLGAV+KV+EDL+YVVLLRKKF YIESIPGVLLPHPS S +P
Sbjct: 172 ------TIALIAVREGVIQLGAVHKVIEDLSYVVLLRKKFGYIESIPGVLLPHPSPSPFP 225

Query: 226 FKIDGYHAPAEAWHHYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEALLS 285
           FK+DGY AP +AWH    Q   A       H  ++YDHFNQP   MKITPSMSSLEALLS
Sbjct: 226 FKVDGYGAP-DAWH---FQGTPA-------HAPEFYDHFNQP---MKITPSMSSLEALLS 271

Query: 286 KLPSVVP--PPPSGDYGESQPPLMSPFVSAAHQRPMEFIQAEKVAKEDTDEDYCRRPHDR 343
           KLPSVVP    P+  Y ESQP  +S       QRP+E +  EKV KE+ D+   R  H++
Sbjct: 272 KLPSVVPVSSQPTSGYCESQPQFLSS------QRPLELLGMEKVTKEEIDDQEYR--HEK 323

Query: 344 DVGECSSSMSGYQ 356
           DVGE S S S Y+
Sbjct: 324 DVGESSXSXSAYR 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406603|ref|NP_564753.1| serine/threonine-protein kinase WNK (With No lysine)-related protein [Arabidopsis thaliana] gi|4249385|gb|AAD14482.1|AAD14482 T2K10.11 [Arabidopsis thaliana] gi|21537011|gb|AAM61352.1| unknown [Arabidopsis thaliana] gi|225898034|dbj|BAH30349.1| hypothetical protein [Arabidopsis thaliana] gi|332195533|gb|AEE33654.1| serine/threonine-protein kinase WNK (With No lysine)-related protein [Arabidopsis thaliana]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/310 (76%), Positives = 257/310 (82%), Gaps = 20/310 (6%)

Query: 1   MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60
           MEEHLNPLA+THLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR
Sbjct: 1   MEEHLNPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60

Query: 61  RNWILVWEDGFCNFAASTA---AEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIY 117
           RNWILVWEDGFCNFAAS A   +   SG    S+ YGN +FQ YQGLQPELFFKMSHEIY
Sbjct: 61  RNWILVWEDGFCNFAASAAEMSSGEGSGGGGGSAAYGNSDFQQYQGLQPELFFKMSHEIY 120

Query: 118 NYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIA 177
           NYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHN+ADS+PRTWEAQFQSGIKTIALI+
Sbjct: 121 NYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNSADSYPRTWEAQFQSGIKTIALIS 180

Query: 178 VREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAEA 237
           VREGVVQLGAV+KV+EDL+YVV+LRKK SYIESIPGVLLPHPSSS YPF I+   +P++ 
Sbjct: 181 VREGVVQLGAVHKVIEDLSYVVMLRKKLSYIESIPGVLLPHPSSSGYPF-INA--SPSDT 237

Query: 238 WHHYQI----QNPLAAALPLDHHHHQYYDHFNQPSS----------AMKITPSMSSLEAL 283
           WH   +    Q P       DH+H     H NQP +          +MKITPSMSSLEAL
Sbjct: 238 WHFPGVAPPHQQPEHQFYHSDHNHRFLIGHHNQPQAVGGAAPPLPLSMKITPSMSSLEAL 297

Query: 284 LSKLPSVVPP 293
           LSKLPSVVPP
Sbjct: 298 LSKLPSVVPP 307

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:2202735	386	AT1G60060 "AT1G60060" [Arabido	0.777	0.733	0.754	1.3e-118
TAIR|locus:2154719	377	AT5G53900 "AT5G53900" [Arabido	0.497	0.480	0.390	1.3e-31
TAIR|locus:2087070	362	AT3G15240 "AT3G15240" [Arabido	0.450	0.453	0.373	3.6e-25
TAIR|locus:2042551	720	CPUORF7 "conserved peptide ups	0.239	0.120	0.427	7.5e-14
UNIPROTKB|Q2QXE3	881	LOC_Os12g06330 "Expressed prot	0.329	0.136	0.338	2.7e-09
TAIR|locus:2039580	650	LHW "AT2G27230" [Arabidopsis t	0.266	0.149	0.283	2.1e-07
UNIPROTKB|Q5N9E6	904	P0505D12.13 "BHLH transcriptio	0.521	0.210	0.272	1.3e-05

TAIR|locus:2202735 AT1G60060 "AT1G60060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 230/305 (75%), Positives = 250/305 (81%)

Query:     1 MEEHLNPLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60
             MEEHLNPLA+THLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR
Sbjct:     1 MEEHLNPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 60

Query:    61 RNWILVWEDGFCNFAASTAAEINSGDCPS----SSVYGNCEFQHYQGLQPELFFKMSHEI 116
             RNWILVWEDGFCNFAAS AAE++SG+       S+ YGN +FQ YQGLQPELFFKMSHEI
Sbjct:    61 RNWILVWEDGFCNFAAS-AAEMSSGEGSGGGGGSAAYGNSDFQQYQGLQPELFFKMSHEI 119

Query:   117 YNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALI 176
             YNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHN+ADS+PRTWEAQFQSGIKTIALI
Sbjct:   120 YNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNSADSYPRTWEAQFQSGIKTIALI 179

Query:   177 AVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPFKIDGYHAPAE 236
             +VREGVVQLGAV+KV+EDL+YVV+LRKK SYIESIPGVLLPHPSSS YPF I+   +P++
Sbjct:   180 SVREGVVQLGAVHKVIEDLSYVVMLRKKLSYIESIPGVLLPHPSSSGYPF-INA--SPSD 236

Query:   237 AWHHYQI----QNXXXXXXXXXXXXXQYYDHFNQPSS----------AMKITPSMSSLEA 282
              WH   +    Q                  H NQP +          +MKITPSMSSLEA
Sbjct:   237 TWHFPGVAPPHQQPEHQFYHSDHNHRFLIGHHNQPQAVGGAAPPLPLSMKITPSMSSLEA 296

Query:   283 LLSKL 287
             LLSKL
Sbjct:   297 LLSKL 301

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2154719 AT5G53900 "AT5G53900" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 77/197 (39%), Positives = 111/197 (56%)

Query:    26 NSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSG 85
             NS W+Y+VFW I PR   P    G G   +      + +L+WEDGFC    S        
Sbjct:    31 NSDWIYSVFWTIRPR---PRVRGGNGC--KIGDESGSLMLMWEDGFCGGGRSEDL----- 80

Query:    86 DCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEI 145
              C  + + G     H + L  + F KMS ++YNYGEGL+GKVA+D  HKW++KEP++ E 
Sbjct:    81 -CLETDIEG-----HEEDLVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPSESEP 134

Query:   146 NFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKF 205
             N  + W ++ D+ P  W  QF+SGI+TIA+I    G++QLG+   + EDL++V+ +R+ F
Sbjct:   135 NLANYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRQMF 194

Query:   206 SYIESIPGVLLPHPSSS 222
               I    G  L    SS
Sbjct:   195 ESIGYRSGFYLSQLFSS 211

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2087070 AT3G15240 "AT3G15240" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 68/182 (37%), Positives = 99/182 (54%)

Query:    43 PPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQ 102
             P P+  G G   +   +  + +L+WEDG+C     T        C     YG+ E     
Sbjct:    57 PRPRVRGGGNGCKVGDDNGSLMLMWEDGYCRGRGGTEG------C-----YGDME----- 100

Query:   103 GLQP--ELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPR 160
             G  P  + F KMS ++YNYGEGL+GKVA+D  HKW++KE  + E N  S W ++ D+ P 
Sbjct:   101 GEDPVRKSFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEQTESESNASSYWQSSFDAIPS 160

Query:   161 TWEAQFQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPS 220
              W  QF+SGI+TIA+I    G++QLG+   + EDL++V+ +R  F  +    G  L    
Sbjct:   161 EWNDQFESGIRTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLF 220

Query:   221 SS 222
             SS
Sbjct:   221 SS 222

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2042551 CPUORF7 "conserved peptide upstream open reading frame 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 7.5e-14, Sum P(3) = 7.5e-14
 Identities = 41/96 (42%), Positives = 60/96 (62%)

Query:   111 KMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGI 170
             KMS+ +Y+ GEG++G+VA    H+W++ E N    N    +HN        WE+Q  +GI
Sbjct:    62 KMSYHVYSLGEGIVGQVAVSGEHQWVFPE-NYNNCNSAFEFHNV-------WESQISAGI 113

Query:   171 KTIALIAVRE-GVVQLGAVNKVVEDLNYVVLLRKKF 205
             KTI ++AV   GVVQLG++ KV ED+N+V  +R  F
Sbjct:   114 KTILVVAVGPCGVVQLGSLCKVNEDVNFVNHIRHLF 149

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q2QXE3 LOC_Os12g06330 "Expressed protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 152 (58.6 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
 Identities = 48/142 (33%), Positives = 76/142 (53%)

Query:    65 LVWEDGFCNFAASTA-AEINSGDCPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGL 123
             LVWEDGFC  A+ +A +E +   C S      C       L  ++   M+ +++  GEG 
Sbjct:    33 LVWEDGFCGHASCSAGSEASEAGCESGGAV--CT------LVRKI---MASQVHVVGEGT 81

Query:   124 IGKVAADHSHKWIYKEP-NDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-EG 181
             IG+ A   +H+WI  E  ND  +        AA+ +      QF++GIKTIA+I V   G
Sbjct:    82 IGRAAFTGNHQWIVHETANDHGLRSEVV---AAEMNN-----QFRAGIKTIAIIPVLPRG 133

Query:   182 VVQLGAVNKVVEDLNYVVLLRK 203
             V+QLG+ + ++E+++ V   +K
Sbjct:   134 VLQLGSTSVILENISSVQQYKK 155

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2039580 LHW "AT2G27230" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 30/106 (28%), Positives = 55/106 (51%)

Query:   112 MSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIK 171
             +++ I   GEGL+G+ A    H+WI     +++++     +            QF +GI+
Sbjct:    74 LNNRIILVGEGLVGRAAFTGHHQWILANSFNRDVHPPEVINEML--------LQFSAGIQ 125

Query:   172 TIALI-AVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLL 216
             T+A+   V  GVVQLG+   ++E+L +V  ++     +  +PG LL
Sbjct:   126 TVAVFPVVPHGVVQLGSSLPIMENLGFVNDVKGLILQLGCVPGALL 171

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0010078 "maintenance of root meristem identity" evidence=IMP

GO:0010479 "stele development" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0016569 "covalent chromatin modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

UNIPROTKB|Q5N9E6 P0505D12.13 "BHLH transcription factor-like protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 135 (52.6 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 57/209 (27%), Positives = 89/209 (42%)

Query:    14 LQHTLRSLCIHENSQWVYAVFWRILPRNYPPPK----WDGQGAYDRSRGNRR-NWILVWE 68
             L+ +LR LC      W YAVFWR   R     +    W G G Y+R+ G    +     +
Sbjct:     7 LRDSLRRLCTDVG--WSYAVFWRAT-RAADSQRLKLVW-GDGHYERAAGAPSISGFEAMD 62

Query:    69 DGFCNFAASTAAEINSGDCPSSSVYGNCEFQHYQGLQPELFFK-MSHEIYNYGEGLIGKV 127
                   AA+  +    G         +    H       L  K M+ +++  GEG+IG+ 
Sbjct:    63 LLLKEKAAALRSGTGRGGGGGEGHAADGAAGHSHDRVDALVHKAMAQQVHVVGEGVIGQA 122

Query:   128 AADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-EGVVQLG 186
             A    H+WI  +  D+            D      + QF +GI+TIA+I V   GV+QLG
Sbjct:   123 ALTGLHRWIVHDIVDE--------CEEEDEVLLEMKGQFCAGIQTIAVIPVLPRGVIQLG 174

Query:   187 AVNKVVEDLNYVVLLRKKFSYIESIPGVL 215
             +   V+E+  ++  +R  F  + S   V+
Sbjct:   175 STKMVMEEAAFIDHVRSLFQQLGSSTAVV 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      364       342   0.00096  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  298 KB (2152 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.37u 0.08s 26.45t   Elapsed:  00:00:02
  Total cpu time:  26.37u 0.08s 26.45t   Elapsed:  00:00:02
  Start:  Fri May 10 03:14:05 2013   End:  Fri May 10 03:14:07 2013

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	364
pfam14215	171	pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans	1e-53

>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal

 Score =  174 bits (443), Expect = 1e-53
 Identities = 54/207 (26%), Positives = 76/207 (36%), Gaps = 51/207 (24%)

Query: 14  LQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCN 73
           LQ  L++L   E+ QW YA+FW++ P                      + +L W DG+ N
Sbjct: 1   LQQRLQALV--ESEQWSYAIFWQLSPDQ--------------------SGVLGWGDGYYN 38

Query: 74  FAASTAAEINSGDCPSSSVYGNCEFQ--------HYQGLQPELFFK-------MSHEIYN 118
               T   +              E                 +L          M+   + 
Sbjct: 39  GEIKTRKTVAEELGLQRK-KVLRELYSLLSGSRDAAALSPEDLTDTEWFYLVSMTF-SFP 96

Query: 119 YGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAV 178
            GEGL GK  A  SH W+         N             R+W AQ  +GI+TI  I V
Sbjct: 97  PGEGLPGKAFASGSHIWLSGANELDSSNC-----------SRSWLAQS-AGIQTIVCIPV 144

Query: 179 REGVVQLGAVNKVVEDLNYVVLLRKKF 205
             GVV+LG+  K+ EDLN V  ++  F
Sbjct: 145 PGGVVELGSTEKIPEDLNLVQHVKSLF 171

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
PF14215	163	bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa	100.0

>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal

Probab=100.00  E-value=7.3e-50  Score=356.34  Aligned_cols=155  Identities=39%  Similarity=0.632  Sum_probs=129.6

Q ss_pred             HHHHHHHhccCCCCCceEEEEeeecCCCCCCCCCCCCCccccCCCCCCceeEEecCccccCCccchhhcC------CCC-
Q 017877           14 LQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEIN------SGD-   86 (364)
Q Consensus        14 LQ~~LrsLc~~~~~~WtYAVFWqisprn~ppP~w~~~g~~D~S~~~sg~~iLvWgDGycng~~~~~~E~~------~~~-   86 (364)
                      |||+||+||+  +++|+||||||+++++                     ++|+||||||++++++++..+      +.. 
T Consensus         1 Lq~~Lr~lv~--~~~W~YaVFWk~~~~~---------------------~~L~W~DG~~~g~~~~~~~~~~~~~~~~~~l   57 (163)
T PF14215_consen    1 LQQRLRSLVE--NSQWTYAVFWKLSPDN---------------------SVLVWGDGYCNGPKETRKNGEEEQEQRSKVL   57 (163)
T ss_pred             ChHHHHHHhC--CCCCcEEEEeEEcCCC---------------------CeeeEcceeecCCcccccchhhccchhhhHH
Confidence            7999999999  8899999999999775                     499999999999876543210      000 


Q ss_pred             CCCCCCCCCccccccCCcchHHHHhhccc-cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhh
Q 017877           87 CPSSSVYGNCEFQHYQGLQPELFFKMSHE-IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQ  165 (364)
Q Consensus        87 ~~~ss~~g~~~~~~~~~~d~EwFflMSm~-sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQ  165 (364)
                      ....+.++++...+.+++++||||++||+ +|  |+|+|||||++|+|+||++++..           ..+.|+|+|+||
T Consensus        58 ~~l~~~~~~~~~~~~~v~~~e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~-----------~~~~~~r~~~aq  124 (163)
T PF14215_consen   58 RELHSSFSSYALSPEEVTDTEWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANEL-----------DSSYCERAWLAQ  124 (163)
T ss_pred             HHHhhhccccccccchhHHHHHHhhceeeEEe--cCCccEEEeecCccEEEeCCCcc-----------ccccchhhhhhc
Confidence            01122223445678899999999999994 66  99999999999999999999742           345789999999


Q ss_pred             hccCcceEEEeEeCCceEeecccccccCChHHHHHHHHHh
Q 017877          166 FQSGIKTIALIAVREGVVQLGAVNKVVEDLNYVVLLRKKF  205 (364)
Q Consensus       166 FsaGIQTIVcIPV~~GVVELGSte~I~Ed~~lV~~IK~lF  205 (364)
                       .+||||||||||++||||||||++|+||.+||++||++|
T Consensus       125 -~~~~~Tiv~IPv~~GVvELGSt~~I~Ed~~~v~~vk~~F  163 (163)
T PF14215_consen  125 -FAGIQTIVCIPVPNGVVELGSTEKIPEDSNLVQRVKSLF  163 (163)
T ss_pred             -ccccceEEEEEecCCEEEeeeeeeeccCHHHHHHHHhhC
Confidence             688889999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	364
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 51/350 (14%), Positives = 89/350 (25%), Gaps = 98/350 (28%)

Query: 75  AASTAAEINSGDCPSSSVY----GNCEFQHYQGLQPELFFKMSHEIY-----NYGEGLIG 125
           A                ++     NC         PE   +M  ++      N+      
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCN-------SPETVLEMLQKLLYQIDPNWTSR--- 216

Query: 126 KVAADHSHKWIYK-EPNDQEINFLSAWHNAADS--------HPRTWEAQFQSGIKTI--- 173
              +DHS     +      E+  L       +         + + W A F    K +   
Sbjct: 217 ---SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTT 272

Query: 174 -------ALIAVREGVVQLGAVNKVVEDLNYVVLLRKKFSYIESIPGVLLPHPSSSAYPF 226
                   L A     + L   +  +       LL K   Y++  P   LP    +  P 
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQ-DLPREVLTTNPR 328

Query: 227 KIDGYHAPAEAWHHYQIQNPLAAALPLDHHHHQYYDHFNQPSSAMKITPSMSSLEAL--- 283
           ++                  +A ++         + H N       I  S++ LE     
Sbjct: 329 RLSI----------------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 284 -----LSKLPSVVPPPPS--------GDYGESQPPLMSPFV--SAAHQRPMEF------I 322
                LS  P     P              +    +++     S   ++P E       I
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-VVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 323 QAEKVAKEDTD--------EDYCRRPHDRDVGECS-SSMSGY-QHHFHHH 362
             E   K + +        + Y   P   D  +     +  Y   H  HH
Sbjct: 432 YLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
1f5m_A	180	GAF; CGMP binding, signaling protein; 1.90A {Sacch	94.87
3dba_A	180	CONE CGMP-specific 3',5'-cyclic phosphodiesterase	94.79
3trc_A	171	Phosphoenolpyruvate-protein phosphotransferase; si	94.54
3e0y_A	181	Conserved domain protein; APC87688.2, geobacter su	93.67
1vhm_A	195	Protein YEBR; structural genomics, unknown functio	93.25
3ci6_A	171	Phosphoenolpyruvate-protein phosphotransferase; PE	92.98
2w3g_A	153	DOSS, two component sensor histidine kinase DEVS (	92.51
3k2n_A	177	Sigma-54-dependent transcriptional regulator; PSI-	92.32
3mmh_A	167	FRMSR, methionine-R-sulfoxide reductase; oxidoredu	91.74
2e4s_A	189	CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod	90.83
3rfb_A	171	Putative uncharacterized protein; FRMSR, GAF, oxid	90.06
2vjw_A	149	GAF-B, GAF family protein; histidine kinase, hypox	89.78
3ksh_A	160	Putative uncharacterized protein; FRMSR, free-Met-	89.65
3oov_A	169	Methyl-accepting chemotaxis protein, putative; str	86.97
2zmf_A	189	CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho	85.16
3hcy_A	151	Putative two-component sensor histidine kinase PR;	84.6
3ibj_A	691	CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE	80.13

>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*

Probab=94.87  E-value=0.011  Score=51.72  Aligned_cols=72  Identities=17%  Similarity=0.301  Sum_probs=52.4

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeCC------ceEeecccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVRE------GVVQLGAVN  189 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~~------GVVELGSte  189 (364)
                      .|..|+|+.|+|+.+++.+.|.+....                +| |.+. ..+++.++|||+..      |||++.+.+
T Consensus        93 ~i~~g~Gi~G~aa~~g~~v~v~Dv~~d----------------p~-~~~~-~~~~~S~l~vPi~~~~g~viGVL~l~s~~  154 (180)
T 1f5m_A           93 MIQFGKGVCGTAASTKETQIVPDVNKY----------------PG-HIAC-DGETKSEIVVPIISNDGKTLGVIDIDCLD  154 (180)
T ss_dssp             EEETTSHHHHHHHHHTSCEEESCGGGS----------------TT-CCCS-STTCCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred             eecCCCcchhhhhhcCCEEEeCCcccC----------------cc-cccc-CcccceEEEEEEEcCCCeEEEEEEeccCC
Confidence            688899999999999999999765421                11 1222 46889999999865      999999876


Q ss_pred             cc---cCChHHHHHHHHHh
Q 017877          190 KV---VEDLNYVVLLRKKF  205 (364)
Q Consensus       190 ~I---~Ed~~lV~~IK~lF  205 (364)
                      .-   .+|..+++.+-...
T Consensus       155 ~~~F~~~d~~~L~~la~~~  173 (180)
T 1f5m_A          155 YEGFDHVDKEFLEKLAKLI  173 (180)
T ss_dssp             TTCCCHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            42   34556666655443

>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}

Probab=94.79  E-value=0.01  Score=50.36  Aligned_cols=78  Identities=14%  Similarity=0.033  Sum_probs=52.4

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~  190 (364)
                      .++.|+|+.|+|+.+|+++.|.+...+  .           .+.+.........++.++|||+.     -|||+|.+...
T Consensus        82 ~~~~~~gi~g~v~~tg~~v~i~d~~~d--~-----------~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~  148 (180)
T 3dba_A           82 VFPLDIGIAGWVAHTKKFFNIPDVKKN--N-----------HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLN  148 (180)
T ss_dssp             EECTTSSHHHHHHHHTCCEEESCGGGC--T-----------TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESS
T ss_pred             eeeCCCCHHHHHHHhCCEEEecCCCCC--c-----------ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCC
Confidence            578899999999999999999865421  1           12222211112357899999984     39999988754


Q ss_pred             c----cCChHHHHHHHHHhh
Q 017877          191 V----VEDLNYVVLLRKKFS  206 (364)
Q Consensus       191 I----~Ed~~lV~~IK~lF~  206 (364)
                      -    .+|..+++.+-....
T Consensus       149 ~~~Ft~~d~~lL~~lA~~aa  168 (180)
T 3dba_A          149 ASEFSKEDEEVFKKYLNFIS  168 (180)
T ss_dssp             SSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            2    356667666655443

>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}

Probab=94.54  E-value=0.088  Score=41.80  Aligned_cols=74  Identities=19%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~  190 (364)
                      .+..++|+.|+++.+++++++.+....  ..           +....... ..|++.++|||+.     -|||.+++.+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~-----------~~~~~~~~-~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~  137 (171)
T 3trc_A           72 RLKFGEGLIGLVGEREEPINLADAPLH--PA-----------YKHRPELG-EEDYHGFLGIPIIEQGELLGILVIQQLES  137 (171)
T ss_dssp             EEETTCHHHHHHHHHTSCEEESCGGGS--TT-----------CCCCGGGC-CCCCCEEEEEEEEETTEEEEEEEEEESSS
T ss_pred             eecCCCChhhHHHhcCCeEEeCCCCCC--Cc-----------ccccccCC-cccccEEEEEeEEECCEEEEEEEEeecCC
Confidence            567788999999999999999654321  11           11111112 4789999999984     49999999764


Q ss_pred             cc---CChHHHHHHHH
Q 017877          191 VV---EDLNYVVLLRK  203 (364)
Q Consensus       191 I~---Ed~~lV~~IK~  203 (364)
                      -.   +|.++++.+-.
T Consensus       138 ~~f~~~d~~~l~~la~  153 (171)
T 3trc_A          138 HHFAEEEEAFCVTLAI  153 (171)
T ss_dssp             CCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            32   34445544443

>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}

Probab=93.67  E-value=0.14  Score=40.85  Aligned_cols=76  Identities=17%  Similarity=0.264  Sum_probs=47.9

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~  190 (364)
                      .+..|+|+.|+++.+++++++.+.....             .+....... ..|++.++|||+.     -|||.+.+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~-------------~~~~~~~~~-~~~~~s~l~vPl~~~~~~iGvl~~~~~~~  142 (181)
T 3e0y_A           77 RIKIGDGITGSVARDGQYISLSRASQDP-------------RYRYFPELQ-EEKYNSMLSFPIGDKKEVYGVINLNTTSI  142 (181)
T ss_dssp             EEETTTSSHHHHHHHCCCEEEEEECCCC-------------CC----------CEEEEEEEEEECSSCEEEEEEEEESSC
T ss_pred             cccCCCCeeeehhhcCCeEEecCcccCc-------------ccccccccc-ccCcceEEEEEEEeCCeEEEEEEEeeCCC
Confidence            5677899999999999999997653210             011111112 4689999999984     48999998864


Q ss_pred             c---cCChHHHHHHHHHh
Q 017877          191 V---VEDLNYVVLLRKKF  205 (364)
Q Consensus       191 I---~Ed~~lV~~IK~lF  205 (364)
                      -   .+|.++++.+-...
T Consensus       143 ~~f~~~~~~~l~~la~~~  160 (181)
T 3e0y_A          143 RSFHEDEIYFVSIIANLI  160 (181)
T ss_dssp             CCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            3   34455555554433

>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1

Probab=93.25  E-value=0.04  Score=49.34  Aligned_cols=73  Identities=15%  Similarity=0.078  Sum_probs=52.7

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~  190 (364)
                      .|..|+|+.|+|+.+++.+.|.+....                +| +.+. ..+.+.++|||+.     -|||++.|.+.
T Consensus        88 ~i~~GeGi~G~aa~tg~~i~V~Dv~~~----------------p~-~~~~-~~~~~S~l~VPI~~~g~viGVL~i~s~~~  149 (195)
T 1vhm_A           88 RIPVGRGVCGTAVARNQVQRIEDVHVF----------------DG-HIAC-DAASNSEIVLPLVVKNQIIGVLDIDSTVF  149 (195)
T ss_dssp             EEETTSHHHHHHHHHTSCEEESCTTTC----------------TT-CCCS-CCCCSEEEEEEEEETTEEEEEEEEEESST
T ss_pred             EecCCCChHHHHHhcCCEEEECCcccC----------------cc-hhhc-CCCccEEEEEeEeECCEEEEEEEecCCCC
Confidence            678899999999999999999876421                11 1111 4578999999984     39999999765


Q ss_pred             c---cCChHHHHHHHHHhh
Q 017877          191 V---VEDLNYVVLLRKKFS  206 (364)
Q Consensus       191 I---~Ed~~lV~~IK~lF~  206 (364)
                      -   .+|..+++.+-....
T Consensus       150 ~~F~e~d~~~L~~lA~~ia  168 (195)
T 1vhm_A          150 GRFTDEDEQGLRQLVAQLE  168 (195)
T ss_dssp             TCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            3   346666666655544

>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}

Probab=92.98  E-value=0.17  Score=39.46  Aligned_cols=74  Identities=15%  Similarity=0.108  Sum_probs=45.3

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~  190 (364)
                      .+..++|+.|+++.+++++.+.+....  ..           +....... ..|+++++|||+.     -|||.+++.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~-----------~~~~~~~~-~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~  139 (171)
T 3ci6_A           74 SLQLSEGLVGLVGQREEIVNLENASKH--ER-----------FAYLPETG-EEIYNSFLGVPVMYRRKVMGVLVVQNKQP  139 (171)
T ss_dssp             EEETTSHHHHHHHHHTSCEEESSGGGS--TT-----------C----------CCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             eeeccCCeehhhhccCceEEecCCCcC--cc-----------hhcccccc-ccccceEEEEeEEECCEEEEEEEEecCCC
Confidence            456678999999999999999754311  00           11011112 4689999999984     48999999865


Q ss_pred             cc---CChHHHHHHHH
Q 017877          191 VV---EDLNYVVLLRK  203 (364)
Q Consensus       191 I~---Ed~~lV~~IK~  203 (364)
                      -.   +|..+++.+-.
T Consensus       140 ~~f~~~~~~~l~~la~  155 (171)
T 3ci6_A          140 QDFSEAAESFLVTLCA  155 (171)
T ss_dssp             CCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            32   34444444433

>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*

Probab=92.51  E-value=0.51  Score=36.45  Aligned_cols=74  Identities=18%  Similarity=0.141  Sum_probs=49.0

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~  190 (364)
                      .+..++|+.|+++.+++++.+.+....  ..           +. .+... ..|+++++|||+.     -|||.+++.+.
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~-----------~~-~~~~~-~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~  120 (153)
T 2w3g_A           56 HLPKGLGVIGLLIEDPKPLRLDDVSAH--PA-----------SI-GFPPY-HPPMRTFLGVPVRVRDESFGTLYLTDKTN  120 (153)
T ss_dssp             SCCCSCTHHHHHHHSCSCEEESSGGGS--TT-----------CC-CCCTT-CCCCCCEEEEEEEETTEEEEEEEEEEETT
T ss_pred             cCCCCCCHHHHHHhcCCcEEecCcccC--ch-----------hc-CCCCc-CCCCCeEEEeeEEECCEEEEEEEEeeCCC
Confidence            466689999999999999999764321  11           10 11112 4689999999984     49999998765


Q ss_pred             ----ccCChHHHHHHHHH
Q 017877          191 ----VVEDLNYVVLLRKK  204 (364)
Q Consensus       191 ----I~Ed~~lV~~IK~l  204 (364)
                          -.+|.++++.+-..
T Consensus       121 ~~~f~~~~~~~l~~la~~  138 (153)
T 2w3g_A          121 GQPFSDDDEVLVQALAAA  138 (153)
T ss_dssp             SCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence                23444555554433

>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}

Probab=92.32  E-value=1.7  Score=34.82  Aligned_cols=131  Identities=11%  Similarity=0.041  Sum_probs=78.3

Q ss_pred             chhHHHHHHHHHHHhccCCCCCceEEEEeeecCCCCCCCCCCCCCccccCCCCCCceeEEecCccccCCccchhhcCCCC
Q 017877            7 PLAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSGD   86 (364)
Q Consensus         7 p~~l~~~LQ~~LrsLc~~~~~~WtYAVFWqisprn~ppP~w~~~g~~D~S~~~sg~~iLvWgDGycng~~~~~~E~~~~~   86 (364)
                      -..+.++|+..++.+++  -.+.+++.++-+.++.                    ..+..|..+|......         
T Consensus        18 ~~d~~~~l~~i~~~~~~--~~~~~~~~i~l~d~~~--------------------~~l~~~~~~~~~~~~~---------   66 (177)
T 3k2n_A           18 IRDPQELFRTVTDKLRL--LFAFDSAVIITIDRER--------------------REASVFFEMLRFELPE---------   66 (177)
T ss_dssp             CCSHHHHHHHHHHHHTT--TCCCSEEEEEEEETTT--------------------TEEEEEEEECSSCCCS---------
T ss_pred             ccCHHHHHHHHHHHHHH--hcCCCeEEEEEEcCCC--------------------CeEEeEEecccCCCCc---------
Confidence            45678889999999887  6678888888886432                    2344453333221100         


Q ss_pred             CCCCCCCCCccccccCCcchHHHHhhccccccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCC-chh-hh
Q 017877           87 CPSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHP-RTW-EA  164 (364)
Q Consensus        87 ~~~ss~~g~~~~~~~~~~d~EwFflMSm~sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~-Ra~-~A  164 (364)
                                          +    .....+..+.|+.|+|+.+++++.+ +..... ..         ...+ +.. ..
T Consensus        67 --------------------~----~~~~~~~~~~~~~~~v~~~~~~~~~-d~~~~~-~~---------~~~~~~~~~~~  111 (177)
T 3k2n_A           67 --------------------Q----LRHQTRSIAGTWLEGHLDDRTVTVA-SIARDI-PS---------FGADGAPLLWT  111 (177)
T ss_dssp             --------------------T----TCCSEEECTTSGGGGGTTCCSCEEE-ETTTTC-TT---------TTTTTCHHHHH
T ss_pred             --------------------h----hhcccCCccccHHHHHhccCCceEe-chhhcc-cc---------cCCcchhHHHH
Confidence                                0    0011456788999999999999988 432211 00         1122 111 11


Q ss_pred             hhccCcceEEEeEeC-----CceEeeccccccc---CChHHHHHHHH
Q 017877          165 QFQSGIKTIALIAVR-----EGVVQLGAVNKVV---EDLNYVVLLRK  203 (364)
Q Consensus       165 QFsaGIQTIVcIPV~-----~GVVELGSte~I~---Ed~~lV~~IK~  203 (364)
                      -...|++.++|||+.     -|||.+++.+.-.   +|..+++.+-.
T Consensus       112 ~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~~f~~~d~~ll~~lA~  158 (177)
T 3k2n_A          112 LHELGMRQIVLSPLRSGGRVIGFLSFVSAEEKLWSDGDKSLLSGVSS  158 (177)
T ss_dssp             HHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred             HHHcCceEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
Confidence            125799999999984     5999999866533   34445544433

>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0

Probab=91.74  E-value=0.058  Score=46.98  Aligned_cols=72  Identities=17%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~  190 (364)
                      .|..|+|+.|+|+.+|+.+-|.+....  ..|               .+. ..+++..+|||+.     =|||++.|.+.
T Consensus        77 ~i~~geGi~G~v~~~g~~~~v~Dv~~~--p~~---------------~~~-~~~~~S~i~vPi~~~g~viGVL~i~s~~~  138 (167)
T 3mmh_A           77 RIPFGRGVCGQAWAKGGTVVVGDVDAH--PDH---------------IAC-SSLSRSEIVVPLFSDGRCIGVLDADSEHL  138 (167)
T ss_dssp             EEETTSHHHHHHHHHTSCEEESCGGGS--TTC---------------CCS-STTCCEEEEEEEEETTEEEEEEEEEESST
T ss_pred             EeccCCChHHHHHhCCcEEEECCcccC--cch---------------hhc-CccCCeEEEEEeccCCEEEEEEEEecCCC
Confidence            788999999999999999999876421  111               111 3578899999984     49999998654


Q ss_pred             c---cCChHHHHHHHHHh
Q 017877          191 V---VEDLNYVVLLRKKF  205 (364)
Q Consensus       191 I---~Ed~~lV~~IK~lF  205 (364)
                      -   .+|..+++.+-...
T Consensus       139 ~~F~~~d~~~L~~lA~~l  156 (167)
T 3mmh_A          139 AQFDETDALYLGELAKIL  156 (167)
T ss_dssp             TCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            3   35566666665544

>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}

Probab=90.06  E-value=0.18  Score=44.61  Aligned_cols=74  Identities=16%  Similarity=0.190  Sum_probs=53.3

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~  190 (364)
                      .+..|+|+.|+|+.+++.+=|.+....  ..|+               +. ..+.+..+|||+.     =|||.+.|.+.
T Consensus        77 ri~~GeGv~G~va~tg~~i~V~Dv~~~--p~~i---------------~~-~~~~~Sei~VPI~~~g~viGVL~i~s~~~  138 (171)
T 3rfb_A           77 RIALGKGVCGEAAHFQETVIVGDVTTY--LNYI---------------SC-DSLAKSEIVVPMMKNGQLLGVLDLDSSEI  138 (171)
T ss_dssp             EEETTSHHHHHHHHTTSCEEESCTTSC--SSCC---------------CS-CTTCCEEEEEEEEETTEEEEEEEEEESST
T ss_pred             EeeCCcCHHHHHHhhCCEEEECCcccC--cccc---------------cc-CcccCceEEEEEEECCEEEEEEEEecCCC
Confidence            789999999999999999999876531  1111               11 3457899999983     49999999654


Q ss_pred             c---cCChHHHHHHHHHhhc
Q 017877          191 V---VEDLNYVVLLRKKFSY  207 (364)
Q Consensus       191 I---~Ed~~lV~~IK~lF~~  207 (364)
                      -   .+|..+++.+-.....
T Consensus       139 ~~F~e~D~~~L~~lA~~la~  158 (171)
T 3rfb_A          139 EDYDAMDRDYLEQFVAILLE  158 (171)
T ss_dssp             TCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            3   4666677776665543

>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A

Probab=89.78  E-value=0.2  Score=41.60  Aligned_cols=48  Identities=13%  Similarity=0.070  Sum_probs=39.5

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAV  188 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSt  188 (364)
                      .|..|+|+.|+|+.+|+++++.+...              +.           |++.++|||+.     -|||.|.+.
T Consensus        55 ~~~~~~g~~g~v~~~g~~v~v~d~~~--------------d~-----------~~~s~l~vPL~~~~~~~GvL~l~~~  107 (149)
T 2vjw_A           55 AIPVQDNAIGQAFRDRAPRRLDVLDG--------------PG-----------LGGPALVLPLRATDTVAGVLVAVQG  107 (149)
T ss_dssp             EEESSSSHHHHHHHHCCCEEESCCCT--------------TS-----------CEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccCCCCCHHHHHhhcCceEEecCccc--------------CC-----------CCCeEEEEEEccCCeEEEEEEEeeC
Confidence            57779999999999999999976531              11           78999999984     399999887

>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*

Probab=89.65  E-value=0.14  Score=44.76  Aligned_cols=72  Identities=14%  Similarity=0.141  Sum_probs=51.3

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~  190 (364)
                      .+..|+|+.|+|+.+++.+-|.+...                ++| +.+. ..+.+..+|||+.     =|||.+.|.+.
T Consensus        76 ri~~GeGv~G~aa~~~~~i~V~Dv~~----------------~p~-~i~~-~~~~~Sei~VPI~~~g~viGVL~i~s~~~  137 (160)
T 3ksh_A           76 HIPIGKGVCGTAVSERRTQVVADVHQ----------------FKG-HIAC-DANSKSEIVVPIFKDDKIIGVLDIDAPIT  137 (160)
T ss_dssp             EEETTSHHHHHHHHHTSCEEESCGGG----------------STT-CCGG-GTTCSEEEEEEEEETTEEEEEEEEEESSS
T ss_pred             EeeCCCCHHHHHHhhCCEEEECCccc----------------Ccc-cccc-CcccCceEEEEEEECCEEEEEEEEecCCC
Confidence            78999999999999999999987642                111 1122 3567899999983     49999999654


Q ss_pred             c---cCChHHHHHHHHHh
Q 017877          191 V---VEDLNYVVLLRKKF  205 (364)
Q Consensus       191 I---~Ed~~lV~~IK~lF  205 (364)
                      -   .+|..+++.+-...
T Consensus       138 ~~F~e~D~~~L~~lA~~l  155 (160)
T 3ksh_A          138 DRFDDNDKEHLEAIVKII  155 (160)
T ss_dssp             SCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            3   35566666665443

>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}

Probab=86.97  E-value=1.8  Score=33.97  Aligned_cols=75  Identities=15%  Similarity=0.117  Sum_probs=46.7

Q ss_pred             CCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc----
Q 017877          120 GEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK----  190 (364)
Q Consensus       120 GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~----  190 (364)
                      |.|+.|+++.+++++++.+....  ..+.     ... .+.... . ..|++.++|||+.     -|||.+++.+.    
T Consensus        72 ~~~~~~~~~~~~~~~~i~d~~~~--~~~~-----~~~-~~~~~~-~-~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~f  141 (169)
T 3oov_A           72 RGGVITKCFTDRQVYMIDDVSAY--PTDF-----RLQ-SPYDAI-R-ALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSL  141 (169)
T ss_dssp             GGHHHHHHHHHTCCEEESCGGGS--CGGG-----SCC-TTGGGC-G-GGCCSSEEEEEEEETTEEEEEEEEECTTSSSCC
T ss_pred             ccchHHHHHhcCCCEEeccccch--hhhh-----hcc-ccHHHH-H-hcCcCcEEEEEEEeCCcEEEEEEEEccccCCCC
Confidence            68999999999999999755321  1110     000 001111 2 4689999999984     49999998643    


Q ss_pred             ccCChHHHHHHHHH
Q 017877          191 VVEDLNYVVLLRKK  204 (364)
Q Consensus       191 I~Ed~~lV~~IK~l  204 (364)
                      -.+|.++++.+-..
T Consensus       142 ~~~d~~~l~~~a~~  155 (169)
T 3oov_A          142 NDTDVDTIKLFADQ  155 (169)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            23455565555443

>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}

Probab=85.16  E-value=0.21  Score=40.28  Aligned_cols=76  Identities=18%  Similarity=0.124  Sum_probs=49.3

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-----CceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-----EGVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-----~GVVELGSte~  190 (364)
                      .++.++|+.|+|+.+++++.+.+....             ..+.+........+++.++|||+.     -|||.+.....
T Consensus        85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~-------------~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~  151 (189)
T 2zmf_A           85 RFSIEKGIAGQVARTGEVLNIPDAYAD-------------PRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKIS  151 (189)
T ss_dssp             EEETTSHHHHHHHHHCCCEEESCGGGS-------------TTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETT
T ss_pred             ccCCCccHHHHHHHhCCeEEEeccccc-------------ccccccchhhcccccceEEEeeecccCceeeEEEEEEcCC
Confidence            577889999999999999999765321             112222222225689999999973     37888864433


Q ss_pred             ----ccCChHHHHHHHHH
Q 017877          191 ----VVEDLNYVVLLRKK  204 (364)
Q Consensus       191 ----I~Ed~~lV~~IK~l  204 (364)
                          -.+|.++++.+-..
T Consensus       152 ~~~f~~~d~~ll~~lA~q  169 (189)
T 2zmf_A          152 GSAFSKTDENNFKMFAVF  169 (189)
T ss_dssp             SSSCCHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence                23456666655433

>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}

Probab=84.60  E-value=1.2  Score=34.98  Aligned_cols=71  Identities=7%  Similarity=-0.000  Sum_probs=42.5

Q ss_pred             cCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchh-hhhhccCcceEEEeEeC-----CceEeecccccc
Q 017877          118 NYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTW-EAQFQSGIKTIALIAVR-----EGVVQLGAVNKV  191 (364)
Q Consensus       118 ~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~-~AQFsaGIQTIVcIPV~-----~GVVELGSte~I  191 (364)
                      ..|+|+.|+++.++++++|.+....             ..+.... .+. ..||+.++|||+.     -|||.+.+.+.-
T Consensus        51 ~~~~~~~~~~~~~~~~~~i~d~~~~-------------~~~~~~~~~~~-~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~  116 (151)
T 3hcy_A           51 VDGHSPWITGANEPEPIFVENVDDA-------------EFSRELKESIV-GEGIAALGFFPLVTEGRLIGKFMTYYDRPH  116 (151)
T ss_dssp             TCBCCSCC---CCCCCEEESCGGGS-------------CCCHHHHHHHH-HHTCCEEEEEEEESSSSEEEEEEEEESSCC
T ss_pred             ccCCCchhhhhhcCCcEEEeChhhC-------------cccchhHHHHH-hcCchheEEeceEECCEEEEEEEEecCCCC
Confidence            3578999999999999999765321             0111110 122 4799999999984     488999876543


Q ss_pred             c---CChHHHHHHH
Q 017877          192 V---EDLNYVVLLR  202 (364)
Q Consensus       192 ~---Ed~~lV~~IK  202 (364)
                      .   +|..+++.+-
T Consensus       117 ~f~~~~~~ll~~~a  130 (151)
T 3hcy_A          117 RFADSEIGMALTIA  130 (151)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            3   3344444443

>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}

Probab=80.13  E-value=0.93  Score=46.62  Aligned_cols=77  Identities=16%  Similarity=0.053  Sum_probs=49.5

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC-C-----ceEeecccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR-E-----GVVQLGAVN  189 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~-~-----GVVELGSte  189 (364)
                      .++.|+|+.|+|+.+|+++.|.+....             ..+.+........+++.++|||+. +     |||.+.+..
T Consensus       245 ~~~~~~gi~g~v~~~g~~v~i~d~~~d-------------~~~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~  311 (691)
T 3ibj_A          245 RIPADQGIAGHVATTGQILNIPDAYAH-------------PLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKI  311 (691)
T ss_dssp             EEETTSHHHHHHHHHCSCEEESCSTTS-------------TTC------CCSCCCCCEEEEECCCSSSCCCEEEEEEEES
T ss_pred             eccCCCCHHHHHHHhCCEEEecCcccC-------------ccccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECC
Confidence            456788999999999999999765422             112222222212458999999973 2     899998765


Q ss_pred             cc----cCChHHHHHHHHHh
Q 017877          190 KV----VEDLNYVVLLRKKF  205 (364)
Q Consensus       190 ~I----~Ed~~lV~~IK~lF  205 (364)
                      .-    .+|..+++.+-...
T Consensus       312 ~~~~f~~~d~~ll~~lA~~~  331 (691)
T 3ibj_A          312 NGPWFSKFDEDLATAFSIYC  331 (691)
T ss_dssp             SSSSCCTTTTHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            43    56777776654443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	364
d1vhma_	159	Hypothetical protein YebR {Escherichia coli [TaxId	93.83
d1f5ma_	176	Hypothetical protein ykl069wp {Baker's yeast (Sacc	93.26
d1mc0a1	187	3',5'-cyclic nucleotide phosphodiesterase 2A, GAF	87.57

>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: Hypothetical protein YebR
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.018  Score=46.92  Aligned_cols=70  Identities=14%  Similarity=0.087  Sum_probs=50.4

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEeC--C---ceEeeccccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAVR--E---GVVQLGAVNK  190 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV~--~---GVVELGSte~  190 (364)
                      .++.|+|+.|+|+.+|+++.+.+....                +|..  .+..+++.++|||+.  +   |||.++|.+.
T Consensus        67 ~i~~g~g~~g~v~~~~~~~~v~d~~~d----------------~~~~--~~~~~~~S~l~vPl~~~~~viGvl~v~s~~~  128 (159)
T d1vhma_          67 RIPVGRGVCGTAVARNQVQRIEDVHVF----------------DGHI--ACDAASNSEIVLPLVVKNQIIGVLDIDSTVF  128 (159)
T ss_dssp             EEETTSHHHHHHHHHTSCEEESCTTTC----------------TTCC--CSCCCCSEEEEEEEEETTEEEEEEEEEESST
T ss_pred             EEecCCChHHHHHHcCCcEEecChHHh----------------hhhh--hcccccceeEEeCEEECCEEEEEEEecCCCC
Confidence            367899999999999999999876421                2221  125788999999983  2   9999999765


Q ss_pred             cc---CChHHHHHHHH
Q 017877          191 VV---EDLNYVVLLRK  203 (364)
Q Consensus       191 I~---Ed~~lV~~IK~  203 (364)
                      =.   +|..+++.|-.
T Consensus       129 ~~F~~~d~~ll~~la~  144 (159)
T d1vhma_         129 GRFTDEDEQGLRQLVA  144 (159)
T ss_dssp             TCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            44   34555555443

>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: Hypothetical protein ykl069wp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.26  E-value=0.019  Score=47.78  Aligned_cols=68  Identities=15%  Similarity=0.275  Sum_probs=47.8

Q ss_pred             cccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhccCcceEEEeEe--CC----ceEeecccc
Q 017877          116 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQSGIKTIALIAV--RE----GVVQLGAVN  189 (364)
Q Consensus       116 sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFsaGIQTIVcIPV--~~----GVVELGSte  189 (364)
                      ..+.|+|+.|+|+.+|+.+.|.+...                .+|..  ....++++.+|||+  .+    |||.+.|.+
T Consensus        90 ~i~~g~Gi~G~v~~~g~~i~v~D~~~----------------dpr~~--~~~~~~~S~l~vPl~~~~g~~~GVl~v~s~~  151 (176)
T d1f5ma_          90 MIQFGKGVCGTAASTKETQIVPDVNK----------------YPGHI--ACDGETKSEIVVPIISNDGKTLGVIDIDCLD  151 (176)
T ss_dssp             EEETTSHHHHHHHHHTSCEEESCGGG----------------STTCC--CSSTTCCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred             eecCCCcHHHHHHHhCCeEEecCccc----------------Ccchh--hccccccceEEecccccCCcEEEEEEeccCC
Confidence            46789999999999999999986532                12221  12457889999998  34    799999987


Q ss_pred             cccCChHHHHHH
Q 017877          190 KVVEDLNYVVLL  201 (364)
Q Consensus       190 ~I~Ed~~lV~~I  201 (364)
                      .-.=+.+=+..+
T Consensus       152 ~~~F~~~d~~~l  163 (176)
T d1f5ma_         152 YEGFDHVDKEFL  163 (176)
T ss_dssp             TTCCCHHHHHHH
T ss_pred             CCCcCHHHHHHH
Confidence            644444433333

>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.57  E-value=0.07  Score=43.19  Aligned_cols=125  Identities=13%  Similarity=0.020  Sum_probs=80.3

Q ss_pred             hhHHHHHHHHHHHhccCCCCCceEEEEeeecCCCCCCCCCCCCCccccCCCCCCceeEEecCccccCCccchhhcCCCCC
Q 017877            8 LAMTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNRRNWILVWEDGFCNFAASTAAEINSGDC   87 (364)
Q Consensus         8 ~~l~~~LQ~~LrsLc~~~~~~WtYAVFWqisprn~ppP~w~~~g~~D~S~~~sg~~iLvWgDGycng~~~~~~E~~~~~~   87 (364)
                      +.+..+|++.|+.+.+  -.+...|.+|-+.+++                     ..|. -..+.+...           
T Consensus        18 ld~~~l~~~il~~~~~--~~~ad~~~i~L~d~~~---------------------~~l~-~~~~~~~~~-----------   62 (187)
T d1mc0a1          18 LDATSLQLKVLQYLQQ--ETQATHCCLLLVSEDN---------------------LQLS-CKVIGDKVL-----------   62 (187)
T ss_dssp             SSHHHHHHHHHHHHHH--HSCEEEEEEEEECSSS---------------------CEEE-EEEETTEEE-----------
T ss_pred             CCHHHHHHHHHHHHHH--HhCCCEEEEEEEECCC---------------------ceEE-EEEeccCCc-----------
Confidence            5677888888888877  6789999999997543                     1221 111111000           


Q ss_pred             CCCCCCCCccccccCCcchHHHHhhccccccCCCCeeeeEeeCCCeeeeeCCCCchhhhhhhhcccCCCCCCchhhhhhc
Q 017877           88 PSSSVYGNCEFQHYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNAADSHPRTWEAQFQ  167 (364)
Q Consensus        88 ~~ss~~g~~~~~~~~~~d~EwFflMSm~sF~~GeGLpGKaaasg~h~WI~~~~~~~e~~f~s~w~~s~d~~~Ra~~AQFs  167 (364)
                             .      .    +       ..|+.|+|+.|+|+.+++++++.+...  +..+.             ......
T Consensus        63 -------~------~----~-------~~~~~~~g~~~~v~~~~~~~~i~d~~~--d~~~~-------------~~~~~~  103 (187)
T d1mc0a1          63 -------G------E----E-------VSFPLTMGRLGQVVEDKQCIQLKDLTS--DDVQQ-------------LQNMLG  103 (187)
T ss_dssp             -------E------E----E-------EEEESSSSSHHHHHHHCCCEEGGGSCH--HHHHH-------------HHHHHC
T ss_pred             -------c------c----c-------eeecCCccHHHHHHHhhhhhhhhcccc--ccccc-------------cchhhh
Confidence                   0      0    0       157889999999999999999987642  22111             112224


Q ss_pred             cCcceEEEeEeC-------CceEeeccccc----ccCChHHHHHHHHHhh
Q 017877          168 SGIKTIALIAVR-------EGVVQLGAVNK----VVEDLNYVVLLRKKFS  206 (364)
Q Consensus       168 aGIQTIVcIPV~-------~GVVELGSte~----I~Ed~~lV~~IK~lF~  206 (364)
                      .++++++|+|+.       -|||.+.....    -.+|..+++.+-....
T Consensus       104 ~~~~s~l~vPl~~~~~~~~iGvl~~~~~~~~~~fs~~d~~~l~~~a~~~a  153 (187)
T d1mc0a1         104 CELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDEHVIQHCFHYTG  153 (187)
T ss_dssp             SCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhhhhhccccccceEEEEEEcccccchhhhHHHHHHHHHHHHHH
Confidence            678999999983       47898875433    3556778777755543