Citrus Sinensis ID: 017886

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVISSA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHcccEEEccccccccccccccccEEEEccccccHHHHHHHHcccccEEEccccccHHHHHHHHHHHHcccEEEEEcccccccEEEEccccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHcHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccccEEEEcccccccccccHHHHHccccHHHHHccccccccEEEEEccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEcHHHHHHHHHcccEEEEcccccEEccEcccccEEEEccccHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHccccEEEEEEccccccEEEEccccccEEEEEcHHHHHHHHHHHHcccccccccccEEEEccHHHHHHccccccccHHHEEEEEccccccccHHHHHHHHHHHcHHHcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHccccEEEEccHHHcccccEEEEccccccEEEEccccccccEEEEEEccccccHHHHHcc
Coil and Loop (DISEMBL)
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITneiihnptvNKRLEEMavqnipveegkkqfdvvnkgdvvvLPAFGAAVEEMVTLNnknvqivdttcpwvSKVWTSVekhkkgdytsiihgkysheetvataSFAGKYIIVKNMKEAEYVCDYIlggelngssstKEAFLEKFKKAVskgfdpdvdlVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVggwnssntsHLQEIaedrgipsywidsekrigpgnkIAYKLMHGElvekenwlpkgqitigitsgastpdkvissa
Flexible Loop (DISEMBL)
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPveegkkqfdvvNKGDVVVLPAFGAAVEEMVTLnnknvqivdttcPWVSKVWTsvekhkkgdytsiihgkysheeTVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAvskgfdpdvdlVKVGianqttmlkgeteeIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQeiaedrgipsywidsekriGPGNKIAYKLMHGELVEKENWLPKGQItigitsgastpdkvissa
Low Complexity Region (SEG)
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVISSA
Disordered region (IsUnstruct)
********IIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNG*****EAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILV*******************GIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGIT*************
Disordered Region (DISOPRED)
****YTS**IKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVISSA
Disordered Region (DISEMBL)
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAS*********
Disordered Region (DISPRO)
**QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTP*****S*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVISSA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
Q6AVG6	459	4-hydroxy-3-methylbut-2-e	yes	no	1.0	0.793	0.854	0.0
Q94B35	466	4-hydroxy-3-methylbut-2-e	yes	no	1.0	0.781	0.818	0.0
B8HWD3	405	4-hydroxy-3-methylbut-2-e	yes	no	0.969	0.871	0.652	1e-143
Q5N249	398	4-hydroxy-3-methylbut-2-e	yes	no	0.975	0.891	0.620	1e-142
Q31S64	398	4-hydroxy-3-methylbut-2-e	yes	no	0.975	0.891	0.620	1e-142
B0C4N8	415	4-hydroxy-3-methylbut-2-e	yes	no	0.994	0.872	0.621	1e-140
Q3M8X6	402	4-hydroxy-3-methylbut-2-e	yes	no	0.975	0.883	0.626	1e-139
P58674	402	4-hydroxy-3-methylbut-2-e	yes	no	0.975	0.883	0.626	1e-139
B1WTZ2	402	4-hydroxy-3-methylbut-2-e	yes	no	0.980	0.888	0.661	1e-138
B0JVA7	402	4-hydroxy-3-methylbut-2-e	yes	no	0.975	0.883	0.631	1e-138

>sp|Q6AVG6|ISPH_ORYSJ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPH PE=2 SV=1

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/364 (85%), Positives = 337/364 (92%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           M+QEYTSD+IK LKENG ++TWG V VKLAE+YGFCWGVERAVQIAYEARKQFP+++IW+
Sbjct: 80  MSQEYTSDVIKTLKENGNQHTWGPVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDRIWL 139

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLE+M VQNIPV+ G K FDVV +GDVVVLPAFGAAVEEM TLN K V
Sbjct: 140 TNEIIHNPTVNKRLEDMGVQNIPVDAGIKDFDVVEQGDVVVLPAFGAAVEEMYTLNEKKV 199

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW  VEKHKKGDYTSIIHGKYSHEETVATASFAG YIIVKN+ EA YV
Sbjct: 200 QIVDTTCPWVSKVWNMVEKHKKGDYTSIIHGKYSHEETVATASFAGTYIIVKNIAEASYV 259

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGG+L+GSSSTKE FLEKFK AVS GFDPDVDLVKVGIANQTTMLKGETEEIGKLV
Sbjct: 260 CDYILGGQLDGSSSTKEEFLEKFKNAVSPGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 319

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           EKTMMR+FGVENVN+HFI+FNTICDATQERQDAMY++V+EKVDLILVVGGWNSSNTSHLQ
Sbjct: 320 EKTMMRRFGVENVNDHFIAFNTICDATQERQDAMYQLVKEKVDLILVVGGWNSSNTSHLQ 379

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EI E  GIPSYWIDSE+RIGPGNKI+YKL HGELVEKENWLP+G ITIG+TSGASTPDKV
Sbjct: 380 EIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEKENWLPEGPITIGVTSGASTPDKV 439

Query: 361 ISSA 364
           +  A
Sbjct: 440 VEDA 443

Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 7EC: .EC: 1EC: .EC: 2

>sp|Q94B35|ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/364 (81%), Positives = 338/364 (92%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDI++ LK NG+ Y+WG+V VKLA++YGFCWGVERAVQIAYEARKQFPEE++WI
Sbjct: 87  MNREYTSDILETLKTNGYTYSWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPEERLWI 146

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLE+M V+ IPVE+ KKQFDVV K DVV+LPAFGA V+EM  LN+K V
Sbjct: 147 TNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPAFGAGVDEMYVLNDKKV 206

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWV+KVW +VEKHKKG+YTS+IHGKY+HEET+ATASFAGKYIIVKNMKEA YV
Sbjct: 207 QIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASFAGKYIIVKNMKEANYV 266

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGG+ +GSSSTKE F+EKFK A+SKGFDPD DLVKVGIANQTTMLKGETEEIG+L+
Sbjct: 267 CDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIGRLL 326

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E TMMRK+GVENV+ HFISFNTICDATQERQDA+Y++VEEK+DL+LVVGGWNSSNTSHLQ
Sbjct: 327 ETTMMRKYGVENVSGHFISFNTICDATQERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQ 386

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EI+E RGIPSYWIDSEKRIGPGNKIAYKL +GELVEKEN+LPKG ITIG+TSGASTPDKV
Sbjct: 387 EISEARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEKENFLPKGPITIGVTSGASTPDKV 446

Query: 361 ISSA 364
           +  A
Sbjct: 447 VEDA 450

Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|B8HWD3|ISPH_CYAP4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1

 Score =  508 bits (1309), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 235/360 (65%), Positives = 294/360 (81%), Gaps = 7/360 (1%)

Query: 4   EYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNE 63
           EY S +I++++ENG  +  G V ++LAE++GFCWGVERAV +AYE R+ FP E+IWITNE
Sbjct: 34  EYQSSLIQQIRENGNRFQRGEVTIQLAEAFGFCWGVERAVALAYETRQHFPTERIWITNE 93

Query: 64  IIHNPTVNKRLEEMAVQNIPV-EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI 122
           IIHNP+VN+ L EM V+ IPV E+G+K F VV   DVV+LPAFGA+V+EM  LN+K  +I
Sbjct: 94  IIHNPSVNQNLREMQVEFIPVDEQGQKDFSVVAGEDVVILPAFGASVQEMQLLNDKGCKI 153

Query: 123 VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCD 182
           +DTTCPWVSKVW SVEKHKKG YTSIIHGKY HEET+AT+S+A  Y+IV ++KEAEYVC+
Sbjct: 154 MDTTCPWVSKVWNSVEKHKKGSYTSIIHGKYQHEETIATSSYAATYLIVLDLKEAEYVCN 213

Query: 183 YILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242
           YIL G        +E FL KF+ A S  FDPD DLV+VGIANQTTMLKGETE+IGKL E+
Sbjct: 214 YILNG------GDREEFLHKFRHAYSPDFDPDRDLVRVGIANQTTMLKGETEQIGKLFER 267

Query: 243 TMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEI 302
           T+MRK+G + +N+HF+SFNTICDATQERQDAM+K+VE  +DL++V+GG+NSSNT+HLQEI
Sbjct: 268 TLMRKYGPDQINQHFLSFNTICDATQERQDAMFKLVEYPLDLMVVIGGFNSSNTTHLQEI 327

Query: 303 AEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVIS 362
           + +R IPSY IDS  RIGPGN++ +K +H  L  KENWLP+G I +GITSGASTPDKV+S
Sbjct: 328 SIEREIPSYHIDSADRIGPGNRVEHKPLHRPLEIKENWLPEGPIVVGITSGASTPDKVVS 387

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|Q5N249|ISPH_SYNP6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1

 Score =  506 bits (1302), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 224/361 (62%), Positives = 294/361 (81%), Gaps = 6/361 (1%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +   Y SD+I+ L++NG+    G + ++LAE++GFCWGVERAV IAYE R+ FP+E+IWI
Sbjct: 31  LESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+ L EM+V+ IP E G+K F VV++GDVV+LPAFGA+V+EM  L+ K  
Sbjct: 91  TNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFGASVQEMQLLDEKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWVSKVW +VEKHK+G +TSIIHGKY+HEETVAT+SFA  Y++V N+++A+YV
Sbjct: 151 HIVDTTCPWVSKVWNTVEKHKRGAHTSIIHGKYNHEETVATSSFAETYLVVLNLEQAQYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYIL G        ++ F+ +F KA S GFDPD DL ++GIANQTTMLK ETE IGKL 
Sbjct: 211 CDYILNG------GDRDEFMTRFGKACSAGFDPDRDLERIGIANQTTMLKSETEAIGKLF 264

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+T+++K+G + +N+HF++FNTICDATQERQDAM+++VEE +DLI+V+GG+NSSNT+HLQ
Sbjct: 265 ERTLLKKYGPQALNDHFLAFNTICDATQERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQ 324

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIA +R IPS+ ID+ +RIGPGN+I +K +H +L   E WLP G +TIGITSGASTPDKV
Sbjct: 325 EIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDLTTTEPWLPAGPLTIGITSGASTPDKV 384

Query: 361 I 361
           +
Sbjct: 385 V 385

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|Q31S64|ISPH_SYNE7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1

 Score =  506 bits (1302), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 224/361 (62%), Positives = 294/361 (81%), Gaps = 6/361 (1%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +   Y SD+I+ L++NG+    G + ++LAE++GFCWGVERAV IAYE R+ FP+E+IWI
Sbjct: 31  LESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+ L EM+V+ IP E G+K F VV++GDVV+LPAFGA+V+EM  L+ K  
Sbjct: 91  TNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFGASVQEMQLLDEKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWVSKVW +VEKHK+G +TSIIHGKY+HEETVAT+SFA  Y++V N+++A+YV
Sbjct: 151 HIVDTTCPWVSKVWNTVEKHKRGAHTSIIHGKYNHEETVATSSFAETYLVVLNLEQAQYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYIL G        ++ F+ +F KA S GFDPD DL ++GIANQTTMLK ETE IGKL 
Sbjct: 211 CDYILNG------GDRDEFMTRFGKACSAGFDPDRDLERIGIANQTTMLKSETEAIGKLF 264

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+T+++K+G + +N+HF++FNTICDATQERQDAM+++VEE +DLI+V+GG+NSSNT+HLQ
Sbjct: 265 ERTLLKKYGPQALNDHFLAFNTICDATQERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQ 324

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIA +R IPS+ ID+ +RIGPGN+I +K +H +L   E WLP G +TIGITSGASTPDKV
Sbjct: 325 EIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDLTTTEPWLPAGPLTIGITSGASTPDKV 384

Query: 361 I 361
           +
Sbjct: 385 V 385

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|B0C4N8|ISPH_ACAM1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1

 Score =  499 bits (1285), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 227/365 (62%), Positives = 296/365 (81%), Gaps = 3/365 (0%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +  EY S +I++++ NG+    G+V + LAE++GFCWGVERA+ +AYE R+QFP+E+IWI
Sbjct: 31  LQSEYNSKLIQQIRNNGYRLQQGDVTIHLAEAFGFCWGVERAIALAYETRRQFPQERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVE-EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKN 119
           TNEIIHNP+VNK L +M V+ IPV+ +G+K F VV + DVV+LPAFGA+V+EM  L++K 
Sbjct: 91  TNEIIHNPSVNKNLRDMKVEFIPVQPDGQKDFTVVGQNDVVILPAFGASVQEMQLLHDKG 150

Query: 120 VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEY 179
             I+DTTCPWVSKVWTSVEKHKKG YTSIIHGKY HEET+AT+SFAG Y+++ N++EAEY
Sbjct: 151 CTIMDTTCPWVSKVWTSVEKHKKGSYTSIIHGKYKHEETIATSSFAGTYLVLLNLEEAEY 210

Query: 180 VCDYILG-GELNGSSSTKEA-FLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIG 237
           V DYIL  G+       + A F+ KF  A S GFDP+ DL +VGIANQTTMLKGETE+IG
Sbjct: 211 VADYILNPGDTPSEREQRRADFMAKFANAHSPGFDPETDLERVGIANQTTMLKGETEQIG 270

Query: 238 KLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297
           KL E+T+MRK+G   VNEHF+SFNTICDATQERQDA++++V+E +DL++V+GG+NSSNT+
Sbjct: 271 KLFERTVMRKYGPAQVNEHFLSFNTICDATQERQDAIFQLVDEPLDLMVVIGGFNSSNTT 330

Query: 298 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTP 357
           HLQEI+ D+ IPSY IDS  RIGPGN++ +K ++ +L   +NWLP G + IG+TSGASTP
Sbjct: 331 HLQEISIDKNIPSYHIDSVDRIGPGNRVEHKPLNADLTVTDNWLPNGPLAIGVTSGASTP 390

Query: 358 DKVIS 362
           DKV+S
Sbjct: 391 DKVVS 395

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|Q3M8X6|ISPH_ANAVT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1

 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 226/361 (62%), Positives = 290/361 (80%), Gaps = 6/361 (1%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWI
Sbjct: 31  LQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+R++EM V  IPVE G K F VV   DVV+LPAFGA+V+EM  L+ K  
Sbjct: 91  TNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           +IVDTTCPWVSKVW +VEKHKKGD+TSIIHGKY HEET+AT+SFAGKY+IV N+KEA+YV
Sbjct: 151 KIVDTTCPWVSKVWNTVEKHKKGDHTSIIHGKYKHEETIATSSFAGKYLIVLNLKEAQYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
            DYIL G        +E FL+KF KA S GFDPD DL +VGIANQTTMLKGETE+IGKL 
Sbjct: 211 ADYILHGR------NREEFLQKFAKACSAGFDPDKDLERVGIANQTTMLKGETEQIGKLF 264

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E TM++K+G   +N+HF SFNTICDATQERQDAM ++V+E +DL++V+GG+NSSNT+ LQ
Sbjct: 265 EHTMLQKYGPVELNQHFQSFNTICDATQERQDAMLELVQENLDLMIVIGGFNSSNTTQLQ 324

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           +I+++RG+PSY ID  +RI   N I ++ ++GELV  ENWLP G+I +G+TSGASTPDKV
Sbjct: 325 QISQERGLPSYHIDVVERIKSVNSIEHRQLNGELVTTENWLPAGKIVVGVTSGASTPDKV 384

Query: 361 I 361
           +
Sbjct: 385 V 385

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|P58674|ISPH_NOSS1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ispH PE=3 SV=1

 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 226/361 (62%), Positives = 290/361 (80%), Gaps = 6/361 (1%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWI
Sbjct: 31  LQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+R++EM V  IPVE G K F VV   DVV+LPAFGA+V+EM  L+ K  
Sbjct: 91  TNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           +IVDTTCPWVSKVW +VEKHKKGD+TSIIHGKY HEET+AT+SFAGKY+IV N+KEA+YV
Sbjct: 151 KIVDTTCPWVSKVWNTVEKHKKGDHTSIIHGKYKHEETIATSSFAGKYLIVLNLKEAQYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
            DYIL G        +E FL+KF KA S GFDPD DL +VGIANQTTMLKGETE+IGKL 
Sbjct: 211 ADYILHG------GNREEFLQKFAKACSAGFDPDRDLERVGIANQTTMLKGETEQIGKLF 264

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E TM++K+G   +N+HF SFNTICDATQERQDAM ++V+E +DL++V+GG+NSSNT+ LQ
Sbjct: 265 EHTMLQKYGPVELNQHFQSFNTICDATQERQDAMLELVQENLDLMIVIGGFNSSNTTQLQ 324

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           +I+++RG+PSY ID  +RI   N I ++ ++GELV  ENWLP G+I +G+TSGASTPDKV
Sbjct: 325 QISQERGLPSYHIDVVERIKSINSIEHRQLNGELVTTENWLPAGKIVVGVTSGASTPDKV 384

Query: 361 I 361
           +
Sbjct: 385 V 385

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|B1WTZ2|ISPH_CYAA5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1

 Score =  493 bits (1268), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/363 (66%), Positives = 296/363 (81%), Gaps = 6/363 (1%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN EY S +I+K++EN +++  G+V +KLAE++GFCWGVERAV +AYE R+ FP+EKIWI
Sbjct: 31  MNTEYQSSLIQKIRENNYQWQEGDVTIKLAEAFGFCWGVERAVAMAYETRQHFPQEKIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+RL EM V  I V  G K F VV  GDVV+LPAFGA+V EM  LN+K  
Sbjct: 91  TNEIIHNPSVNQRLLEMNVGFIEVINGSKDFSVVEAGDVVILPAFGASVTEMQLLNDKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWVSKVW SVEKHKK DYTSIIHGKY HEETVAT+SFAG Y++V N+KEA+YV
Sbjct: 151 TIVDTTCPWVSKVWNSVEKHKKKDYTSIIHGKYKHEETVATSSFAGTYLVVLNLKEAQYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYIL G        K+ FLEKFK A S+GFDPD DL+++GIANQTTMLK ETE+IGKL 
Sbjct: 211 CDYILNG------GNKDEFLEKFKNAHSEGFDPDKDLIRLGIANQTTMLKSETEQIGKLF 264

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E TM++K+G   +NEHF+SFNTICDATQERQDAM  +VEE+VD+++V+GG+NSSNT+HLQ
Sbjct: 265 ETTMLKKYGPTELNEHFMSFNTICDATQERQDAMLNLVEEEVDVMVVIGGFNSSNTTHLQ 324

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EI+ ++GI SY IDS+KRI PGNKI +K +  ++  KENWLP G+I +G+TSGASTPDKV
Sbjct: 325 EISIEKGIDSYHIDSDKRILPGNKIEHKPLEKDIETKENWLPDGKIIVGVTSGASTPDKV 384

Query: 361 ISS 363
           + +
Sbjct: 385 VEA 387

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

>sp|B0JVA7|ISPH_MICAN 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1

 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/361 (63%), Positives = 288/361 (79%), Gaps = 6/361 (1%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           M  EY SD+I++++EN +    G+V + LA+++GFCWGVERAV +AYE R+ FP+E+IWI
Sbjct: 31  MTNEYQSDLIQEIRENNYRLQRGDVTIYLAQAFGFCWGVERAVAMAYETRQHFPQERIWI 90

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+RL  MAV  IPVE G+K F VV  GDVV+LPAFGA+V EM  LN+K  
Sbjct: 91  TNEIIHNPSVNQRLRSMAVGFIPVENGQKDFTVVESGDVVILPAFGASVSEMQILNDKGC 150

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWVSKVW SVEKHKK D+TSIIHGKY+HEET+AT+SFAG Y+IV N+ +A YV
Sbjct: 151 MIVDTTCPWVSKVWNSVEKHKKSDHTSIIHGKYNHEETIATSSFAGTYLIVLNLDQANYV 210

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
            +YIL G        K  FLEKFK A S+GFDPD DL  +GIANQTTMLK ETEEIGKL 
Sbjct: 211 ANYILHG------GDKNEFLEKFKNAHSQGFDPDRDLDYIGIANQTTMLKSETEEIGKLF 264

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E TM+RK+G  +  +HF+SFNTICDATQERQDA++++V+E + L++V+GG+NSSNT+HLQ
Sbjct: 265 EHTMLRKYGPIDFKDHFMSFNTICDATQERQDAIFELVKEPLSLMVVIGGYNSSNTTHLQ 324

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIA +R IPSY IDS +RI PGN+I +K +  +L+  +NWL +G+I +G+TSGASTPDKV
Sbjct: 325 EIAIERAIPSYHIDSAERILPGNRIEHKPLGDDLIITDNWLNEGKIVVGVTSGASTPDKV 384

Query: 361 I 361
           +
Sbjct: 385 V 385

Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
224105455	460	predicted protein [Populus trichocarpa]	1.0	0.791	0.881	0.0
189017050	426	putative chloroplast 4-hydroxy-3-methylb	1.0	0.854	0.879	0.0
405789874	371	putative 4-hydroxy-3-methylbut-2-enyl di	0.991	0.973	0.878	0.0
356545301	380	PREDICTED: 4-hydroxy-3-methylbut-2-enyl	1.0	0.957	0.873	0.0
356538819	462	PREDICTED: 4-hydroxy-3-methylbut-2-enyl	1.0	0.787	0.870	0.0
255556135	466	4-hydroxy-3-methylbut-2-enyl diphosphate	1.0	0.781	0.873	0.0
164605002	462	4-hydroxy-3-methylbut-2-enyl diphosphate	0.991	0.781	0.891	0.0
255641515	380	unknown [Glycine max]	1.0	0.957	0.870	0.0
195928050	462	4-hydroxy-3-methylbut-2-enyl diphosphate	0.991	0.781	0.886	0.0
449506403	468	PREDICTED: 4-hydroxy-3-methylbut-2-enyl	1.0	0.777	0.865	0.0

>gi|224105455|ref|XP_002313816.1| predicted protein [Populus trichocarpa] gi|222850224|gb|EEE87771.1| predicted protein [Populus trichocarpa]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/364 (88%), Positives = 350/364 (96%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIKKLKENG+EYTWGNV VKLAE+YGFCWGVERAVQIAYEARKQFP++KIWI
Sbjct: 81  MNREYTSDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDKIWI 140

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM V+N+PVEEGKKQF+VVN GDVV+LPAFGAAV+EM+TL++KNV
Sbjct: 141 TNEIIHNPTVNKRLEEMEVENVPVEEGKKQFEVVNGGDVVILPAFGAAVDEMLTLSSKNV 200

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVWT+VEKHKKGDYTSIIHGKY+HEETVATASFAGKYIIVK+MKEA YV
Sbjct: 201 QIVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKDMKEAMYV 260

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGGELNGSSST+E FLEKFK AVSKGFDPD DLVK+GIANQTTMLKGETE+IGKLV
Sbjct: 261 CDYILGGELNGSSSTREEFLEKFKNAVSKGFDPDSDLVKLGIANQTTMLKGETEDIGKLV 320

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+ MMRK+GVENVN+HFISFNTICDATQERQDAMYK+VEEK+DL+LVVGGWNSSNTSHLQ
Sbjct: 321 ERIMMRKYGVENVNDHFISFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQ 380

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIAE  GIPSYWIDSE+RIGPGNKIAYKL HGELVEKENWLP+G ITIG+TSGASTPDKV
Sbjct: 381 EIAEHHGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPQGPITIGVTSGASTPDKV 440

Query: 361 ISSA 364
           +  A
Sbjct: 441 VEDA 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|189017050|gb|ACD70402.1| putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [Populus trichocarpa]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/364 (87%), Positives = 349/364 (95%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIKKLKENG+EY WGNV VKLAE+YGFCWGVERAVQIAYEARKQFP++KIWI
Sbjct: 47  MNREYTSDIIKKLKENGYEYAWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDKIWI 106

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM V+N+PVEEGKKQF+VVN GDVV+LPAFGAAV+EM+TL++KNV
Sbjct: 107 TNEIIHNPTVNKRLEEMEVENVPVEEGKKQFEVVNGGDVVILPAFGAAVDEMLTLSSKNV 166

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVWT+VEKHKKGDYTSIIHGKY+HEETVATASFAGKYIIVK+MKEA YV
Sbjct: 167 QIVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKDMKEAMYV 226

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGGELNGSSST+E FLEKFK AVSKGFDPD DLVK+GIANQTTMLKGETE+IGKLV
Sbjct: 227 CDYILGGELNGSSSTREEFLEKFKNAVSKGFDPDSDLVKLGIANQTTMLKGETEDIGKLV 286

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+ MMRK+GVENVN+HFISFNTICDATQERQDAMYK+VEEK+DL+LVVGGWNSSNTSHLQ
Sbjct: 287 ERIMMRKYGVENVNDHFISFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQ 346

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIAE  GIPSYWIDSE+RIGPGNKIAYKL HGELVEKENWLP+G ITIG+TSGASTPDKV
Sbjct: 347 EIAEHHGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPQGPITIGVTSGASTPDKV 406

Query: 361 ISSA 364
           +  A
Sbjct: 407 VEDA 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|405789874|gb|AFS28680.1| putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, partial [Olea europaea]

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/361 (87%), Positives = 349/361 (96%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIKKLKENG+EYTWGNV VKLAE+YGFCWGVERAVQIAYEARKQFP EKIWI
Sbjct: 8   MNREYTSDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPTEKIWI 67

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVN+RL+EM V+N+PV++GKK FDVVNKGDVVVLPAFGAAV+EM+ LN+KNV
Sbjct: 68  TNEIIHNPTVNQRLDEMEVKNLPVKDGKKFFDVVNKGDVVVLPAFGAAVDEMLVLNDKNV 127

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVWT+VEKHKKG+Y SIIHGKYSHEETVATASFAGKYIIVKNM EA YV
Sbjct: 128 QIVDTTCPWVSKVWTTVEKHKKGEYASIIHGKYSHEETVATASFAGKYIIVKNMAEATYV 187

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGGEL+GSSSTKEAFLEKFK AVS+GFDPD DLVKVGIANQTTMLKGETEEIGKLV
Sbjct: 188 CDYILGGELDGSSSTKEAFLEKFKYAVSEGFDPDTDLVKVGIANQTTMLKGETEEIGKLV 247

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+++MRK+GVEN+N HFISFNTICDATQERQDAMYK+V+E++DL+LVVGGWNSSNTSHLQ
Sbjct: 248 ERSLMRKYGVENINNHFISFNTICDATQERQDAMYKLVDEQMDLMLVVGGWNSSNTSHLQ 307

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIAEDRGIPSYWIDSEKRIGPGN+I+YKLMHGELVEKENWLP+G +TIG+TSGASTPDKV
Sbjct: 308 EIAEDRGIPSYWIDSEKRIGPGNRISYKLMHGELVEKENWLPEGPVTIGVTSGASTPDKV 367

Query: 361 I 361
           +
Sbjct: 368 V 368

Source: Olea europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545301|ref|XP_003541082.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/364 (87%), Positives = 345/364 (94%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIK LKENG+EYTWG V VKLAE+YGFCWGVERAVQIAYEARKQFP E IW+
Sbjct: 1   MNREYTSDIIKTLKENGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWL 60

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIP+EEG KQFDVVNKGDVV+LPAFGAAVEEM+TL+ KNV
Sbjct: 61  TNEIIHNPTVNKRLEEMNVQNIPLEEGGKQFDVVNKGDVVILPAFGAAVEEMLTLSEKNV 120

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWV+KVW SVEKHK+ DYTS+IHGKY+HEETVATASFAGKYIIVKNM EAEYV
Sbjct: 121 QIVDTTCPWVAKVWNSVEKHKQRDYTSVIHGKYAHEETVATASFAGKYIIVKNMAEAEYV 180

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGGELNGSSSTKEAFLEKFK AVS+GFDPD DL+K GIANQTTMLKGETEEIGKL+
Sbjct: 181 CDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKAGIANQTTMLKGETEEIGKLL 240

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+TMMRK+GVEN+NEHF+SFNTICDATQERQDAMYK+VEE +DL+LVVGGWNSSNTSHLQ
Sbjct: 241 ERTMMRKYGVENINEHFMSFNTICDATQERQDAMYKLVEEDLDLMLVVGGWNSSNTSHLQ 300

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIAE+RGIPSYWIDSE+RIGPGNKIAYKL HGELVEKENWLP+G ITIG+TSGASTPDKV
Sbjct: 301 EIAEERGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPEGPITIGVTSGASTPDKV 360

Query: 361 ISSA 364
           +  A
Sbjct: 361 VEDA 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538819|ref|XP_003537898.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/364 (87%), Positives = 345/364 (94%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIK LK+NG+EYTWG V VKLAE+YGFCWGVERAVQIAYEARKQFP E IWI
Sbjct: 83  MNREYTSDIIKTLKDNGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWI 142

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIP+EE  KQFDVVNKGDVV+LPAFGAAVEEM+TL+ KNV
Sbjct: 143 TNEIIHNPTVNKRLEEMNVQNIPLEESGKQFDVVNKGDVVILPAFGAAVEEMLTLSEKNV 202

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWV+KVW SVEKHK+GDYTS+IHGKY+HEETVATASFAGKYIIVKNMKEAEYV
Sbjct: 203 QIVDTTCPWVAKVWNSVEKHKQGDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEAEYV 262

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGGELNGSSSTKEAFLEKFK AVS+GFDPD DL+K GIANQTTMLKGETE+IGKL+
Sbjct: 263 CDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKAGIANQTTMLKGETEDIGKLL 322

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+TMM K+GVEN+NEHF+SFNTICDATQERQDAMYK+VEE +DL+LVVGGWNSSNTSHLQ
Sbjct: 323 ERTMMHKYGVENINEHFMSFNTICDATQERQDAMYKLVEEDLDLMLVVGGWNSSNTSHLQ 382

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIAE+RGIPSYWIDSE+RIGPGNKIAYKL HGELVEKENWLP+G ITIG+TSGASTPDKV
Sbjct: 383 EIAEERGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPEGPITIGVTSGASTPDKV 442

Query: 361 ISSA 364
           +  A
Sbjct: 443 VEDA 446

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556135|ref|XP_002519102.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis] gi|223541765|gb|EEF43313.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/364 (87%), Positives = 348/364 (95%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           M+QEYTSDIIK LKENG EYTWGNV VKLAE+YGFCWGVERAVQIAYEARKQFP+EKIWI
Sbjct: 87  MSQEYTSDIIKTLKENGNEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWI 146

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM V+NIP+EEG+KQF+VVN GDVV+LPAFGAAV+EM+TL+NKNV
Sbjct: 147 TNEIIHNPTVNKRLEEMNVENIPLEEGRKQFEVVNNGDVVILPAFGAAVDEMLTLSNKNV 206

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW +VEKHKKGDYTSIIHGKYSHEET+ATASFAG YIIVKNMKEA YV
Sbjct: 207 QIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYSHEETIATASFAGTYIIVKNMKEAMYV 266

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGG+LNGSSSTKE FL+KFK AVSKGFDPDVDLVKVGIANQTTMLKGETE+IGKLV
Sbjct: 267 CDYILGGQLNGSSSTKEEFLKKFKNAVSKGFDPDVDLVKVGIANQTTMLKGETEDIGKLV 326

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           EKTMM+++GVENVN+HFISFNTICDATQERQDAM+ +VEEK+DLILV+GGWNSSNTSHLQ
Sbjct: 327 EKTMMQRYGVENVNDHFISFNTICDATQERQDAMFNLVEEKLDLILVIGGWNSSNTSHLQ 386

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIAE RGIPSYWIDSE+RIGPGN+IAYKL HGELVEKEN+LP+G ITIG+TSGASTPDKV
Sbjct: 387 EIAELRGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENFLPEGPITIGVTSGASTPDKV 446

Query: 361 ISSA 364
           +  A
Sbjct: 447 VEDA 450

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164605002|dbj|BAF98297.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/361 (89%), Positives = 346/361 (95%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MNQEYTSDIIK LKENG +Y WGNV +KLAE+YGFCWGVERAVQIAYEARKQFP+EKIWI
Sbjct: 83  MNQEYTSDIIKTLKENGNQYKWGNVTIKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWI 142

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIPV EGKK F+VV+ GDVV+LPAFGAAVEEM+TL+NKNV
Sbjct: 143 TNEIIHNPTVNKRLEEMNVQNIPVGEGKKHFEVVDSGDVVILPAFGAAVEEMLTLSNKNV 202

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW +VEKHKKG+YTSIIHGKYSHEET+ATASFAGK+IIVKNM+EA YV
Sbjct: 203 QIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYSHEETIATASFAGKHIIVKNMEEAMYV 262

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGG+LNGSSSTKEAFLEKFK AVSKGFDPDVDL KVGIANQTTMLKGETEEIGKLV
Sbjct: 263 CDYILGGQLNGSSSTKEAFLEKFKYAVSKGFDPDVDLDKVGIANQTTMLKGETEEIGKLV 322

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           EKTMMRK+GVENVN+HFISFNTICDATQERQDAM+K+VEEK+DLILVVGGWNSSNTSHLQ
Sbjct: 323 EKTMMRKYGVENVNDHFISFNTICDATQERQDAMFKLVEEKLDLILVVGGWNSSNTSHLQ 382

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIAE RGIPSYWIDSE+RIGPGNKIAYKL HGELVEKEN+LP+G ITIGITSGASTPDKV
Sbjct: 383 EIAELRGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENFLPEGPITIGITSGASTPDKV 442

Query: 361 I 361
           +
Sbjct: 443 V 443

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641515|gb|ACU21031.1| unknown [Glycine max]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/364 (87%), Positives = 344/364 (94%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIK LKENG+EYTWG V VKLAE+YGFCWGVERAVQIAYEARKQFP E IW+
Sbjct: 1   MNREYTSDIIKTLKENGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWL 60

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIP+EEG KQFDVVNKGDVV+LPA GAAVEEM+TL+ KNV
Sbjct: 61  TNEIIHNPTVNKRLEEMNVQNIPLEEGGKQFDVVNKGDVVILPALGAAVEEMLTLSEKNV 120

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWV+KVW SVEKHK+ DYTS+IHGKY+HEETVATASFAGKYIIVKNM EAEYV
Sbjct: 121 QIVDTTCPWVAKVWNSVEKHKQRDYTSVIHGKYAHEETVATASFAGKYIIVKNMAEAEYV 180

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGGELNGSSSTKEAFLEKFK AVS+GFDPD DL+K GIANQTTMLKGETEEIGKL+
Sbjct: 181 CDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKAGIANQTTMLKGETEEIGKLL 240

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+TMMRK+GVEN+NEHF+SFNTICDATQERQDAMYK+VEE +DL+LVVGGWNSSNTSHLQ
Sbjct: 241 ERTMMRKYGVENINEHFMSFNTICDATQERQDAMYKLVEEDLDLMLVVGGWNSSNTSHLQ 300

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIAE+RGIPSYWIDSE+RIGPGNKIAYKL HGELVEKENWLP+G ITIG+TSGASTPDKV
Sbjct: 301 EIAEERGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPEGPITIGVTSGASTPDKV 360

Query: 361 ISSA 364
           +  A
Sbjct: 361 VEDA 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195928050|gb|ACG55683.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/361 (88%), Positives = 346/361 (95%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MNQEYTSDIIK LKENG +YTWG+V +KLAE+YGFCWGVERAVQIAYEARKQFP+EKIWI
Sbjct: 83  MNQEYTSDIIKTLKENGNQYTWGDVTIKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWI 142

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIPV EGKK F+VV+ GDVV+LPAFGAAVEEM+TL+NKNV
Sbjct: 143 TNEIIHNPTVNKRLEEMNVQNIPVGEGKKHFEVVDSGDVVILPAFGAAVEEMLTLSNKNV 202

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW +VEKHKKG+YTSIIHGKYSHEET+ATASFAGK+IIVKNM+EA YV
Sbjct: 203 QIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYSHEETIATASFAGKHIIVKNMEEAMYV 262

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGG+LNGSSSTKEAFLEKFK AVSKGFDPDVDL K G+ANQTTMLKGETEEIGKLV
Sbjct: 263 CDYILGGQLNGSSSTKEAFLEKFKYAVSKGFDPDVDLDKAGVANQTTMLKGETEEIGKLV 322

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           EKTMMRK+GVENVN+HFISFNTICDATQERQDAM+K+VEEK+DLILVVGGWNSSNTSHLQ
Sbjct: 323 EKTMMRKYGVENVNDHFISFNTICDATQERQDAMFKLVEEKLDLILVVGGWNSSNTSHLQ 382

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIAE RGIPSYWIDSE+RIGPGNKIAYKL HGELVEKEN+LP+G ITIGITSGASTPDKV
Sbjct: 383 EIAELRGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENFLPEGPITIGITSGASTPDKV 442

Query: 361 I 361
           +
Sbjct: 443 V 443

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506403|ref|XP_004162740.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [Cucumis sativus]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/364 (86%), Positives = 346/364 (95%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIK LKENGFEYTWG+V VKLAE+YGFCWGVERAVQIAYEARKQFP+EKIW+
Sbjct: 89  MNREYTSDIIKTLKENGFEYTWGDVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWL 148

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM VQNIP+E+G+KQF+VV+KGDVV+LPAFGAAV+EM+TL+ K V
Sbjct: 149 TNEIIHNPTVNKRLEEMEVQNIPLEDGRKQFEVVDKGDVVILPAFGAAVDEMLTLSEKKV 208

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW  V+KHKKGDYTSIIHGKY+HEETVATASFAG +IIVKNM EA YV
Sbjct: 209 QIVDTTCPWVSKVWNVVDKHKKGDYTSIIHGKYAHEETVATASFAGTFIIVKNMAEAIYV 268

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGGEL+GSSSTKE F++KFK AVSKGFDPDVDL+KVGIANQTTMLKGETEEIGKLV
Sbjct: 269 CDYILGGELDGSSSTKEEFMKKFKNAVSKGFDPDVDLLKVGIANQTTMLKGETEEIGKLV 328

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+TMMRK GVENVNEHF+SFNTICDATQERQDAMYK+VE K+DL+LVVGGWNSSNTSHLQ
Sbjct: 329 ERTMMRKHGVENVNEHFLSFNTICDATQERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQ 388

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIAE+RGIPSYWIDSE+RIGPGN+IAYKL HGELVEKENWLPKG ITIG+TSGASTPDKV
Sbjct: 389 EIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGHITIGVTSGASTPDKV 448

Query: 361 ISSA 364
           +  A
Sbjct: 449 VEDA 452

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:2116164	466	HDR "4-hydroxy-3-methylbut-2-e	1.0	0.781	0.818	2e-166
TIGR_CMR|VC_0685	316	VC_0685 "hydroxymethylbutenyl	0.387	0.446	0.267	2.9e-20
TIGR_CMR|NSE_0438	303	NSE_0438 "4-hydroxy-3-methylbu	0.335	0.402	0.320	4.1e-20
TIGR_CMR|CPS_1211	309	CPS_1211 "4-hydroxy-3-methylbu	0.153	0.181	0.526	4.6e-18
UNIPROTKB|Q8EBI7	318	ispH "4-hydroxy-3-methylbut-2-	0.376	0.430	0.284	8.8e-18
TIGR_CMR|SO_3529	318	SO_3529 "penicillin tolerance	0.376	0.430	0.284	8.8e-18
TIGR_CMR|CJE_0973	277	CJE_0973 "4-hydroxy-3-methylbu	0.392	0.516	0.258	1.8e-17
UNIPROTKB|Q749Y8	282	ispH "4-hydroxy-3-methylbut-2-	0.634	0.819	0.259	4e-17
TIGR_CMR|GSU_2604	282	GSU_2604 "penicillin tolerance	0.634	0.819	0.259	4e-17
UNIPROTKB|P62623	316	ispH "1-hydroxy-2-methyl-2-(E)	0.357	0.411	0.284	2.5e-16

TAIR|locus:2116164 HDR "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1619 (575.0 bits), Expect = 2.0e-166, P = 2.0e-166
 Identities = 298/364 (81%), Positives = 338/364 (92%)

Query:     1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
             MN+EYTSDI++ LK NG+ Y+WG+V VKLA++YGFCWGVERAVQIAYEARKQFPEE++WI
Sbjct:    87 MNREYTSDILETLKTNGYTYSWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPEERLWI 146

Query:    61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
             TNEIIHNPTVNKRLE+M V+ IPVE+ KKQFDVV K DVV+LPAFGA V+EM  LN+K V
Sbjct:   147 TNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPAFGAGVDEMYVLNDKKV 206

Query:   121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
             QIVDTTCPWV+KVW +VEKHKKG+YTS+IHGKY+HEET+ATASFAGKYIIVKNMKEA YV
Sbjct:   207 QIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASFAGKYIIVKNMKEANYV 266

Query:   181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
             CDYILGG+ +GSSSTKE F+EKFK A+SKGFDPD DLVKVGIANQTTMLKGETEEIG+L+
Sbjct:   267 CDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIGRLL 326

Query:   241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
             E TMMRK+GVENV+ HFISFNTICDATQERQDA+Y++VEEK+DL+LVVGGWNSSNTSHLQ
Sbjct:   327 ETTMMRKYGVENVSGHFISFNTICDATQERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQ 386

Query:   301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
             EI+E RGIPSYWIDSEKRIGPGNKIAYKL +GELVEKEN+LPKG ITIG+TSGASTPDKV
Sbjct:   387 EISEARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEKENFLPKGPITIGVTSGASTPDKV 446

Query:   361 ISSA 364
             +  A
Sbjct:   447 VEDA 450

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=IEA;IGI;IEP;ISS

GO:0046677 "response to antibiotic" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

TIGR_CMR|VC_0685 VC_0685 "hydroxymethylbutenyl pyrophosphate reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 144 (55.7 bits), Expect = 2.9e-20, Sum P(3) = 2.9e-20
 Identities = 41/153 (26%), Positives = 74/153 (48%)

Query:    25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
             +K+ LA   GFC GV+RA+ I   A + + +  I++ +E++HN  V + L++   +   V
Sbjct:     1 MKILLANPRGFCAGVDRAISIVERALELY-QPPIYVRHEVVHNRFVVEGLKQRGARF--V 57

Query:    85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
             EE     + V   ++V+  A G +         +++ + D TCP V+KV   V +  +  
Sbjct:    58 EE----LNEVPDDNIVIFSAHGVSQAVRQEAKERSLTVFDATCPLVTKVHMEVARASRKH 113

Query:   145 YTSIIHGKYSHEETVAT-ASFA----GKYIIVK 172
                ++ G   H E   T   +A    G Y++ K
Sbjct:   114 MEVVLIGHAGHPEVEGTMGQYASDTGGMYLVEK 146

GO:0015968 "stringent response" evidence=ISS

GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|NSE_0438 NSE_0438 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 174 (66.3 bits), Expect = 4.1e-20, Sum P(3) = 4.1e-20
 Identities = 41/128 (32%), Positives = 71/128 (55%)

Query:    34 GFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV 93
             GFC GVERA++    A +++PE+KI++ +EI+HN  V +  +   V  I  E+  K    
Sbjct:    10 GFCAGVERAIETVEIAIRRYPEKKIFVYHEIVHNSRVIQDFKARGVDFI--EDITK---- 63

Query:    94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153
             V    V++  A G + E    + + ++ +VD TCP VSK+   V++ +K  +  ++ G  
Sbjct:    64 VEPKSVLIFSAHGVSEEIEKYVKSLDLVLVDATCPLVSKIHREVQRFEKEGFIILVIGNR 123

Query:   154 SHEETVAT 161
             +H E + T
Sbjct:   124 NHAEIIGT 131

GO:0009240 "isopentenyl diphosphate biosynthetic process" evidence=ISS

GO:0015968 "stringent response" evidence=ISS

GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|CPS_1211 CPS_1211 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 143 (55.4 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
 Identities = 30/57 (52%), Positives = 42/57 (73%)

Query:   263 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 319
             IC ATQ RQDA+ + + +KVDL+LVVG  NSSN++ L+E+A   G+ SY ID+ + I
Sbjct:   196 ICYATQNRQDAV-REIADKVDLMLVVGAKNSSNSNRLKELASKMGVTSYLIDTAENI 251

GO:0046677 "response to antibiotic" evidence=ISS

UNIPROTKB|Q8EBI7 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 156 (60.0 bits), Expect = 8.8e-18, Sum P(3) = 8.8e-18
 Identities = 41/144 (28%), Positives = 69/144 (47%)

Query:    18 FEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM 77
             F+ T  ++ + LA   GFC GV+RA+ I   A + F    I++ +E++HN  V + L++ 
Sbjct:     3 FDPTSPSLNIMLANPRGFCAGVDRAISIVERALELF-SPPIYVRHEVVHNRYVVQNLKDR 61

Query:    78 AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137
                 + VEE     D V   ++V+  A G +         + +++ D TCP V+KV   V
Sbjct:    62 GA--VFVEE----LDQVPDNNIVIFSAHGVSQAVRAEAKARGLRVFDATCPLVTKVHLQV 115

Query:   138 EKHKKGDYTSIIHGKYSHEETVAT 161
              +  +     I+ G   H E   T
Sbjct:   116 TRASRKGIECILIGHAGHPEVEGT 139

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SO_3529 SO_3529 "penicillin tolerance protein LytB" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 156 (60.0 bits), Expect = 8.8e-18, Sum P(3) = 8.8e-18
 Identities = 41/144 (28%), Positives = 69/144 (47%)

Query:    18 FEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM 77
             F+ T  ++ + LA   GFC GV+RA+ I   A + F    I++ +E++HN  V + L++ 
Sbjct:     3 FDPTSPSLNIMLANPRGFCAGVDRAISIVERALELF-SPPIYVRHEVVHNRYVVQNLKDR 61

Query:    78 AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137
                 + VEE     D V   ++V+  A G +         + +++ D TCP V+KV   V
Sbjct:    62 GA--VFVEE----LDQVPDNNIVIFSAHGVSQAVRAEAKARGLRVFDATCPLVTKVHLQV 115

Query:   138 EKHKKGDYTSIIHGKYSHEETVAT 161
              +  +     I+ G   H E   T
Sbjct:   116 TRASRKGIECILIGHAGHPEVEGT 139

GO:0003674 "molecular_function" evidence=ND

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|CJE_0973 CJE_0973 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 150 (57.9 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 40/155 (25%), Positives = 74/155 (47%)

Query:    27 VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE 86
             ++LA++YGFC+GV+RA++ A + +       +   NE I    + K      ++NI    
Sbjct:     3 IELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISR--LQKNFNVKTLENIQALS 60

Query:    87 GKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146
              +K+          ++   G   +++  L  K+++I D TCP+V+K     E+  K  Y 
Sbjct:    61 NEKK---------AIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQICEQMSKEGYE 111

Query:   147 SIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYV 180
              +I G  +H E     S+   K  +V + KE + +
Sbjct:   112 VVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNI 146

GO:0015968 "stringent response" evidence=ISS

GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

UNIPROTKB|Q749Y8 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 201 (75.8 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
 Identities = 64/247 (25%), Positives = 121/247 (48%)

Query:    25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
             +++ LA+  GFC+GV+RA Q+A+EA ++  E + +    IIH+P V +RLE M V+ +  
Sbjct:     1 MEIVLAKRAGFCFGVKRATQMAFEAAEK--EGETFTLGPIIHSPQVVQRLEGMGVKVLSD 58

Query:    85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
              EG      +  G V++  + G    E+     + +++VD TCP+V K    V++     
Sbjct:    59 LEG------IGNGTVIIR-SHGVTSAELEDAVRRQLEVVDATCPFVKKAQEHVKRLSHDG 111

Query:   145 YTSIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203
             YT ++ G   H E     S+A G   +V + +EA  + +    G +  ++ + E      
Sbjct:   112 YTVVVVGDADHPEVQGIVSYAEGPVHVVGSGEEAARLPNMKKVGVVAQTTQSFETLKNVV 171

Query:   204 KKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263
             K+ + KG   ++ +    I + T + + E + + + V+  M+   G  + N   ++   +
Sbjct:   172 KECLLKG--GEIRVFNT-ICDATAVRQDEAKALAREVD-CMIVIGGFNSANTKRLA--EV 225

Query:   264 CDATQER 270
             C   Q R
Sbjct:   226 CSELQPR 232

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|GSU_2604 GSU_2604 "penicillin tolerance protein LytB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 201 (75.8 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
 Identities = 64/247 (25%), Positives = 121/247 (48%)

Query:    25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
             +++ LA+  GFC+GV+RA Q+A+EA ++  E + +    IIH+P V +RLE M V+ +  
Sbjct:     1 MEIVLAKRAGFCFGVKRATQMAFEAAEK--EGETFTLGPIIHSPQVVQRLEGMGVKVLSD 58

Query:    85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
              EG      +  G V++  + G    E+     + +++VD TCP+V K    V++     
Sbjct:    59 LEG------IGNGTVIIR-SHGVTSAELEDAVRRQLEVVDATCPFVKKAQEHVKRLSHDG 111

Query:   145 YTSIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203
             YT ++ G   H E     S+A G   +V + +EA  + +    G +  ++ + E      
Sbjct:   112 YTVVVVGDADHPEVQGIVSYAEGPVHVVGSGEEAARLPNMKKVGVVAQTTQSFETLKNVV 171

Query:   204 KKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263
             K+ + KG   ++ +    I + T + + E + + + V+  M+   G  + N   ++   +
Sbjct:   172 KECLLKG--GEIRVFNT-ICDATAVRQDEAKALAREVD-CMIVIGGFNSANTKRLA--EV 225

Query:   264 CDATQER 270
             C   Q R
Sbjct:   226 CSELQPR 232

GO:0003674 "molecular_function" evidence=ND

GO:0015968 "stringent response" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

UNIPROTKB|P62623 ispH "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase" [Escherichia coli K-12 (taxid:83333)]

 Score = 138 (53.6 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
 Identities = 39/137 (28%), Positives = 64/137 (46%)

Query:    25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
             +++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I +
Sbjct:     1 MQILLANPRGFCAGVDRAISIVENALAIYGAP-IYVRHEVVHNRYVVDSLRERGA--IFI 57

Query:    85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
             E    Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +  
Sbjct:    58 E----QISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRG 113

Query:   145 YTSIIHGKYSHEETVAT 161
               SI+ G   H E   T
Sbjct:   114 EESILIGHAGHPEVEGT 130

GO:0050992 "dimethylallyl diphosphate biosynthetic process" evidence=IEA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity" evidence=IEA

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IDA

GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity" evidence=IDA

GO:0006744 "ubiquinone biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55643	ISPH_SYNY3	1, ., 1, 7, ., 1, ., 2	0.6204	0.9752	0.9366	N/A	no
P58674	ISPH_NOSS1	1, ., 1, 7, ., 1, ., 2	0.6260	0.9752	0.8830	yes	no
B0JVA7	ISPH_MICAN	1, ., 1, 7, ., 1, ., 2	0.6315	0.9752	0.8830	yes	no
B7K4V8	ISPH_CYAP8	1, ., 1, 7, ., 1, ., 2	0.6170	0.9807	0.8858	yes	no
Q31CR8	ISPH_PROM9	1, ., 1, 7, ., 1, ., 2	0.5785	0.9780	0.8944	yes	no
B7KEG3	ISPH_CYAP7	1, ., 1, 7, ., 1, ., 2	0.6232	0.9752	0.8830	yes	no
B2IZV5	ISPH_NOSP7	1, ., 1, 7, ., 1, ., 2	0.6094	0.9752	0.8830	yes	no
B0C4N8	ISPH_ACAM1	1, ., 1, 7, ., 1, ., 2	0.6219	0.9945	0.8722	yes	no
B8HWD3	ISPH_CYAP4	1, ., 1, 7, ., 1, ., 2	0.6527	0.9697	0.8716	yes	no
Q10WA8	ISPH_TRIEI	1, ., 1, 7, ., 1, ., 2	0.5789	0.9752	0.8852	yes	no
Q7U9K4	ISPH_SYNPX	1, ., 1, 7, ., 1, ., 2	0.5828	0.9752	0.8897	yes	no
B1XPG7	ISPH_SYNP2	1, ., 1, 7, ., 1, ., 2	0.6232	0.9752	0.8808	yes	no
A2BP63	ISPH_PROMS	1, ., 1, 7, ., 1, ., 2	0.5840	0.9780	0.8944	yes	no
A5GIF7	ISPH_SYNPW	1, ., 1, 7, ., 1, ., 2	0.5955	0.9752	0.8897	yes	no
Q7V329	ISPH_PROMP	1, ., 1, 7, ., 1, ., 2	0.5757	0.9780	0.8944	yes	no
A5GWG3	ISPH_SYNR3	1, ., 1, 7, ., 1, ., 2	0.6066	0.9752	0.8743	yes	no
Q3M8X6	ISPH_ANAVT	1, ., 1, 7, ., 1, ., 2	0.6260	0.9752	0.8830	yes	no
B1WTZ2	ISPH_CYAA5	1, ., 1, 7, ., 1, ., 2	0.6611	0.9807	0.8880	yes	no
A2CCK3	ISPH_PROM3	1, ., 1, 7, ., 1, ., 2	0.5706	0.9752	0.8919	yes	no
Q3B080	ISPH_SYNS9	1, ., 1, 7, ., 1, ., 2	0.5741	0.9807	0.8947	yes	no
Q7VDS2	ISPH_PROMA	1, ., 1, 7, ., 1, ., 2	0.5718	0.9752	0.8765	yes	no
A2BUP5	ISPH_PROM5	1, ., 1, 7, ., 1, ., 2	0.5757	0.9780	0.8944	yes	no
A9BDN6	ISPH_PROM4	1, ., 1, 7, ., 1, ., 2	0.5773	0.9752	0.8787	yes	no
A2C096	ISPH_PROM1	1, ., 1, 7, ., 1, ., 2	0.5895	0.9752	0.8852	yes	no
Q7V4T7	ISPH_PROMM	1, ., 1, 7, ., 1, ., 2	0.5734	0.9752	0.8919	yes	no
Q31S64	ISPH_SYNE7	1, ., 1, 7, ., 1, ., 2	0.6204	0.9752	0.8919	yes	no
Q8DK29	ISPH_THEEB	1, ., 1, 7, ., 1, ., 2	0.6481	0.9752	0.8830	yes	no
Q94B35	ISPH_ARATH	1, ., 1, 7, ., 1, ., 2	0.8186	1.0	0.7811	yes	no
Q0IDE5	ISPH_SYNS3	1, ., 1, 7, ., 1, ., 2	0.6011	0.9752	0.8919	yes	no
Q6AVG6	ISPH_ORYSJ	1, ., 1, 7, ., 1, ., 2	0.8543	1.0	0.7930	yes	no
Q5N249	ISPH_SYNP6	1, ., 1, 7, ., 1, ., 2	0.6204	0.9752	0.8919	yes	no
Q7NG74	ISPH_GLOVI	1, ., 1, 7, ., 1, ., 2	0.5476	0.9780	0.8537	yes	no
Q3AN10	ISPH_SYNSC	1, ., 1, 7, ., 1, ., 2	0.5883	0.9752	0.8897	yes	no
A3PAY5	ISPH_PROM0	1, ., 1, 7, ., 1, ., 2	0.5840	0.9780	0.8944	yes	no
Q46HB0	ISPH_PROMT	1, ., 1, 7, ., 1, ., 2	0.5895	0.9752	0.8852	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.17.1.2	0.946
3rd Layer	1.17.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	364
PLN02821	460	PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-buten	0.0
PRK13371	387	PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl d	0.0
COG0761	294	COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphos	1e-93
pfam02401	280	pfam02401, LYTB, LytB protein	7e-92
TIGR00216	280	TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2	3e-85
PRK01045	298	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl dipho	7e-54
PRK00087	647	PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d	3e-46
PRK12360	281	PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl d	5e-44

>gnl|CDD|215440 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase

 Score =  749 bits (1936), Expect = 0.0
 Identities = 305/365 (83%), Positives = 336/365 (92%), Gaps = 1/365 (0%)

Query: 1   MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIW 59
           M  EY TSD++K LKENG  YTWG+V VKLA++YGFCWGVERAVQIAYEARKQFP+EK+W
Sbjct: 81  MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLW 140

Query: 60  ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKN 119
           ITNEIIHNPTVNKRLEEM VQ I VEEG K F VV +GDVV+LPAFGA+VEEM TLN+KN
Sbjct: 141 ITNEIIHNPTVNKRLEEMNVQFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKN 200

Query: 120 VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEY 179
           VQIVDTTCPWVSKVW +VEKHKK DYTS+IHGKY+HEETVATASFAGKYIIVKNMKEA Y
Sbjct: 201 VQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEATY 260

Query: 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL 239
           VCDYILGG+L+GSS TKE FLEKFK AVSKGFDPD DLVKVGIANQTTMLKGETEEIGKL
Sbjct: 261 VCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL 320

Query: 240 VEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299
           +EKTMM+K+GVENVN+HF+SFNTICDATQERQDAMYK+VEEK+DL+LVVGGWNSSNTSHL
Sbjct: 321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHL 380

Query: 300 QEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDK 359
           QEIAE +GIPSYWIDSE+RIGPGN IA+KL HGELVEKENWLP+G +TIG+TSGASTPDK
Sbjct: 381 QEIAEHKGIPSYWIDSEERIGPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSGASTPDK 440

Query: 360 VISSA 364
           V+   
Sbjct: 441 VVEDV 445

Length = 460

>gnl|CDD|237367 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional

 Score =  648 bits (1675), Expect = 0.0
 Identities = 236/361 (65%), Positives = 291/361 (80%), Gaps = 6/361 (1%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           +   Y S +I+ ++ENG+   +G+V +KLA ++GFCWGVERAV +AYE R+ FP+E+IWI
Sbjct: 14  LETAYQSSLIQSIRENGYVLQFGDVTIKLARAFGFCWGVERAVAMAYETRRHFPDERIWI 73

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNP+VN+ L EM V+ IPVE+G K F VV  GDVV+LPAFGA V+EM  LN K  
Sbjct: 74  TNEIIHNPSVNQHLREMGVRFIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGC 133

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
            IVDTTCPWVSKVW +VEKHKK D+TSIIHGKY HEET AT+SFAG Y++V +++EA+YV
Sbjct: 134 HIVDTTCPWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRATSSFAGTYLVVLDLEEAQYV 193

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
            DYILGG        +E FLE+F KA S GFDPD DL +VG+ANQTTMLK ETEEIGKL 
Sbjct: 194 ADYILGG------GDREEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIGKLF 247

Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQ 300
           E+TM+RK+G  N+NEHF+SFNTICDATQERQDAM+ +VEE +DL++V+GG+NSSNT+HLQ
Sbjct: 248 ERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQ 307

Query: 301 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKV 360
           EIA +RGIPSY IDS +RI  GN I +K +  ELV  ENWLP+G +T+GITSGASTPDKV
Sbjct: 308 EIAIERGIPSYHIDSPERILSGNSIEHKPLGKELVVTENWLPEGPVTVGITSGASTPDKV 367

Query: 361 I 361
           +
Sbjct: 368 V 368

Length = 387

>gnl|CDD|223832 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]

 Score =  281 bits (720), Expect = 1e-93
 Identities = 104/337 (30%), Positives = 155/337 (45%), Gaps = 64/337 (18%)

Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           +K+ LA+  GFC GV+RA+QI   A +++    I++ +EI+HN  V  RL E     I V
Sbjct: 2   MKILLAKPRGFCAGVDRAIQIVERALEEYGA-PIYVRHEIVHNRYVVDRLREKGA--IFV 58

Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
           EE  +    V  G  V+  A G +         + ++++D TCP V+KV   VE++ +  
Sbjct: 59  EELDE----VPDGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREG 114

Query: 145 YTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204
           Y  I+ G   H E + T                +Y    +L  E           +E   
Sbjct: 115 YEIILIGHKGHPEVIGTMG--------------QYPEGGVLLVE----------SVEDVA 150

Query: 205 KAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC 264
               +   PD    K+    QTT+   +T EI   +++                 FN IC
Sbjct: 151 NLKVQ--LPD----KLAFVTQTTLSVDDTAEIVAALKERFP--------KIEVPPFNDIC 196

Query: 265 DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNK 324
            ATQ RQDA+ ++  E VDL++VVG  NSSN++ L EIA+  G P+Y ID  + I     
Sbjct: 197 YATQNRQDAVKELAPE-VDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEI----- 250

Query: 325 IAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
                          WL KG  T+G+T+GASTPD ++
Sbjct: 251 ------------DPEWL-KGVKTVGVTAGASTPDWLV 274

Length = 294

>gnl|CDD|217018 pfam02401, LYTB, LytB protein

 Score =  276 bits (707), Expect = 7e-92
 Identities = 109/336 (32%), Positives = 161/336 (47%), Gaps = 67/336 (19%)

Query: 27  VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE 86
           + LAE  GFC GV+RA+QIA  A ++     +++  EI+HN  V  RL E     I VEE
Sbjct: 1   IILAEPRGFCAGVKRAIQIAERALQKSGG-PVYVRGEIVHNRHVVNRLRERGA--IFVEE 57

Query: 87  GKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146
            K+    V +G  V+  A G + E       + +Q++D TCP V+KV  +VE+  K  Y 
Sbjct: 58  LKE----VPEGATVIFSAHGVSPEVREEAKERGLQVIDATCPLVTKVHNAVERMAKKGYH 113

Query: 147 SIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKK 205
            I+ G  +H E   T  +A  +  +V+N ++                             
Sbjct: 114 VILIGHKNHPEVEGTVGYAPEQVFVVENAEDV---------------------------- 145

Query: 206 AVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICD 265
                  P     K+ +  QTT+   +T EI   + +      G          FNTIC 
Sbjct: 146 ----AALPLQADTKLAVVTQTTLSLDDTAEIVAALRERYPEVRG--------PPFNTICY 193

Query: 266 ATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKI 325
           ATQ RQ+A+ ++  E VD++LVVGG NSSN++ L EIA++ G+P+Y ID  + I      
Sbjct: 194 ATQNRQEAVRELAPE-VDVVLVVGGKNSSNSNRLAEIAKEHGVPAYLIDDPEEI------ 246

Query: 326 AYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
                      +  WL KG  T+GIT+GASTPD ++
Sbjct: 247 -----------QPEWL-KGVKTVGITAGASTPDWIV 270

The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria, plants, and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway. Length = 280

>gnl|CDD|232878 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)

 Score =  259 bits (664), Expect = 3e-85
 Identities = 110/337 (32%), Positives = 171/337 (50%), Gaps = 68/337 (20%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
            + LA+  GFC+GV+RA+Q+A EA K+  +  ++    I+HNP V +RL E  V      
Sbjct: 1   DIILAKPRGFCFGVKRAIQMAEEALKESGK-PVYTLGPIVHNPQVVERLRERGVFFF--- 56

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
              +  D V  GD V++ A G   E    L  K ++++D TCP V+KV  +V+K+ K  Y
Sbjct: 57  --LEDLDEVAAGDTVIIRAHGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKEGY 114

Query: 146 TSIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204
             I+ GK +H E + T  +A  K I+V+ +++ E                       K +
Sbjct: 115 HVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENF---------------------KVE 153

Query: 205 KAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC 264
                          +G+ +QTT+ + +T+EI   ++  + +K            FNTIC
Sbjct: 154 D-------------LLGVVSQTTLSQEDTKEIVAELKARVPQKEVP--------VFNTIC 192

Query: 265 DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNK 324
            ATQ RQDA+ ++  E VDL++V+GG NSSNT+ L EIAE+ G PSY I++ + +     
Sbjct: 193 YATQNRQDAVKELAPE-VDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPEE-- 249

Query: 325 IAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
                          WL   ++ +GIT+GASTPD +I
Sbjct: 250 ---------------WLKGVKV-VGITAGASTPDWII 270

The IspH protein (previously designated LytB) has now been recognized as the last enzyme in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 280

>gnl|CDD|234893 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed

 Score =  179 bits (456), Expect = 7e-54
 Identities = 99/347 (28%), Positives = 156/347 (44%), Gaps = 81/347 (23%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
           K+ LA   GFC GV+RA++I   A +++    I++ +EI+HN  V +RLE+     I VE
Sbjct: 2   KILLANPRGFCAGVDRAIEIVERALEKY-GAPIYVRHEIVHNRYVVERLEKKGA--IFVE 58

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           E     D V  G +V+  A G +         + + ++D TCP V+KV   V +  +  Y
Sbjct: 59  E----LDEVPDGAIVIFSAHGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGY 114

Query: 146 TSIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204
             I+ G   H E   T   A G   +V++ ++   +                        
Sbjct: 115 EIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKL------------------------ 150

Query: 205 KAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHF-----IS 259
               +  DPD    K+ +  QTT+   +T EI             +  + E F       
Sbjct: 151 ----EVKDPD----KLALVTQTTLSVDDTAEI-------------IAALKERFPEIQGPP 189

Query: 260 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 319
            + IC ATQ RQ+A+ ++  +  DL++VVG  NSSN++ L+E+AE+ G P+Y ID    I
Sbjct: 190 KDDICYATQNRQEAVKELAPQ-ADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEI 248

Query: 320 GPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPD----KVIS 362
                               W  KG  T+G+T+GAS P+    +VI+
Sbjct: 249 -----------------DPEWF-KGVKTVGVTAGASAPEWLVQEVIA 277

Length = 298

>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed

 Score =  166 bits (423), Expect = 3e-46
 Identities = 95/338 (28%), Positives = 163/338 (48%), Gaps = 73/338 (21%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
           ++ LA+  GFC+GV+RAV  A +  ++    KI+    +IHN  V ++L++  +   P+E
Sbjct: 2   EIILAKKAGFCFGVKRAVDTAIKTAEELKG-KIYTLGPLIHNNQVVEKLKKKGI--KPIE 58

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           +     D +N+GD +++ + G   E +  L +K ++++D TCP+V  +    +K+ +  Y
Sbjct: 59  D----IDELNEGDTIIIRSHGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGY 114

Query: 146 TSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204
             +I G  +H E +    +     IIV++ +EAE +                        
Sbjct: 115 QIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAEKL------------------------ 150

Query: 205 KAVSKGFDPDVDLVKVGIANQTTMLKGETEE-IGKLVEKTMMRKFGVENVNEHFISFNTI 263
                 FD      K+ + +QTT  +   E+ + +L +K            +    FNTI
Sbjct: 151 -----PFDK-----KICVVSQTTEKQENFEKVLKELKKKG-----------KEVKVFNTI 189

Query: 264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGN 323
           C+AT+ RQ+A  K + +KVD+++VVGG NSSNT+ L EI +     +  I++   +    
Sbjct: 190 CNATEVRQEAAEK-LAKKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGEL---- 244

Query: 324 KIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
                         E W  KG   IG+T+GASTPD +I
Sbjct: 245 -------------PEEW-FKGVKIIGVTAGASTPDWII 268

Length = 647

>gnl|CDD|237075 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional

 Score =  152 bits (387), Expect = 5e-44
 Identities = 93/337 (27%), Positives = 161/337 (47%), Gaps = 68/337 (20%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
           K+ +A++ GFC+GV+RA+  AY+  ++   +KI+    +IHN  V   LEE  V+ I   
Sbjct: 2   KILIAKNAGFCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEES 61

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           E     D + +GDVV++ + G + +    L +K ++I+D TCP+V K+   VE++    Y
Sbjct: 62  E----IDSLKEGDVVIIRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGY 117

Query: 146 TSIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204
           + II G  +H E +    +      IV +++E E                     +    
Sbjct: 118 SIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVEN--------------------IPFLD 157

Query: 205 KAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC 264
           KA               +  QTT++    E+I  +++             E  + FNTIC
Sbjct: 158 KAC--------------VVAQTTIIPELWEDILNVIKLK---------SKE-LVFFNTIC 193

Query: 265 DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNK 324
            AT++RQ++  K + ++VD+++V+GG +SSNT  L +I E     ++ I++   +     
Sbjct: 194 SATKKRQESA-KELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDL--- 249

Query: 325 IAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
                   E+++           IGIT+GASTPD +I
Sbjct: 250 --------EMLKDYK-------IIGITAGASTPDWII 271

Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
PLN02821	460	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate red	100.0
PRK13371	387	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	100.0
PRK12360	281	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	100.0
TIGR00216	280	ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph	100.0
PRK01045	298	ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu	100.0
COG0761	294	lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate redu	100.0
PF02401	281	LYTB: LytB protein; InterPro: IPR003451 Terpenes a	100.0
PRK00087	647	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	100.0
PF02401	281	LYTB: LytB protein; InterPro: IPR003451 Terpenes a	96.53
PRK01045	298	ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu	94.29
TIGR00216	280	ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph	92.85
PRK12360	281	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	92.07
cd01537	264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	91.5
COG1587	248	HemD Uroporphyrinogen-III synthase [Coenzyme metab	87.78
PRK13371	387	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	85.79
PRK00087	647	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	84.98
PF02602	231	HEM4: Uroporphyrinogen-III synthase HemD; InterPro	84.74
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	82.1
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	80.84
cd01391	269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	80.67

>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase

Probab=100.00  E-value=2.3e-116  Score=884.17  Aligned_cols=364  Identities=84%  Similarity=1.311  Sum_probs=350.3

Q ss_pred             CCccc-cchHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCc
Q 017886            1 MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV   79 (364)
Q Consensus         1 ~~~~y-~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv   79 (364)
                      |.++| +|+||+.||++|+.+.||+|+|+||+++||||||+|||++|+++++.+++++||+||||||||+|+++|+++||
T Consensus        81 ~~~~y~~s~li~~~r~~~~~~~~g~m~I~LA~~~GFC~GVeRAV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV  160 (460)
T PLN02821         81 MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNV  160 (460)
T ss_pred             hhhhhhccHHHHHHHhCCCeEEecceEEEEeCCCCCCccHHHHHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCC
Confidence            56789 99999999999999999999999999999999999999999999887777899999999999999999999999


Q ss_pred             EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceee
Q 017886           80 QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV  159 (364)
Q Consensus        80 ~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~  159 (364)
                      .+|++.++..+++++++|++|||||||+||++++.|+++|++|||||||||+|+|+.|+++.++||++||+|+++||||+
T Consensus       161 ~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~  240 (460)
T PLN02821        161 QFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETV  240 (460)
T ss_pred             EEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence            99997666667899998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCCcEEEEcChhhHHHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHH
Q 017886          160 ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL  239 (364)
Q Consensus       160 gi~g~~~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~  239 (364)
                      |+.||+++++||++++|++++++||.++.|||++.+++.|+++|+++.+++|||+.+++|+++++||||+.++|++|++.
T Consensus       241 gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~  320 (460)
T PLN02821        241 ATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL  320 (460)
T ss_pred             ecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHH
Confidence            99999988999999999999999999999999999999999999999999999877778999999999999999999999


Q ss_pred             HHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCcc
Q 017886          240 VEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI  319 (364)
Q Consensus       240 l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL  319 (364)
                      |+++|+++++|++.+.|+.+|||||+||++||+|+++|+.+++|+||||||+|||||+||+|||++.|+|+||||+++||
T Consensus       321 l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI  400 (460)
T PLN02821        321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERI  400 (460)
T ss_pred             HHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHc
Confidence            99999999999888899999999999999999999999636899999999999999999999999999999999999999


Q ss_pred             CCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCCCCHHHHhcC
Q 017886          320 GPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVISSA  364 (364)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~e~  364 (364)
                      ++.+.|.|++.||++.++++||+.++.+||||||||||||+|++|
T Consensus       401 ~~~~~i~h~~~~~e~~~~~~wl~~~~~~VGITAGASTPd~lIeeV  445 (460)
T PLN02821        401 GPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSGASTPDKVVEDV  445 (460)
T ss_pred             CcccccccccccchhhhhHHHhccCCCEEEEecCCCCCHHHHHHH
Confidence            999999999999999999999977789999999999999999986

>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional

Probab=100.00  E-value=5.9e-111  Score=834.73  Aligned_cols=358  Identities=66%  Similarity=1.110  Sum_probs=331.2

Q ss_pred             CCccccchHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcE
Q 017886            1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQ   80 (364)
Q Consensus         1 ~~~~y~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~   80 (364)
                      +..+|+|+||++||++|+.+.+|+|+|++|+++||||||+|||++|+++++.+++++||+||||||||+|+++|+++||.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~m~I~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~vytlG~IIHNp~Vv~~L~~~Gv~   93 (387)
T PRK13371         14 LETAYQSSLIQSIRENGYVLQFGDVTIKLARAFGFCWGVERAVAMAYETRRHFPDERIWITNEIIHNPSVNQHLREMGVR   93 (387)
T ss_pred             HHHHHhHHHHHHHHhCCCeeeeCCeEEEEeCCCCCCccHHHHHHHHHHHHhhcCCCCeEEecCCcCCHHHHHHHHhCCCE
Confidence            35789999999999999999999999999999999999999999999988766567999999999999999999999999


Q ss_pred             EecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeee
Q 017886           81 NIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA  160 (364)
Q Consensus        81 ~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~g  160 (364)
                      ++++.++.++++++++|++|||||||+||+++++|+++|++|||||||+|+|+|++|++++++||+|||+|+++||||+|
T Consensus        94 ~v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~~~~Gy~iIIiG~~~HpEV~G  173 (387)
T PRK13371         94 FIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRA  173 (387)
T ss_pred             EEcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHHHhCCCEEEEEcCCCCcceee
Confidence            99864444568899889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCcEEEEcChhhHHHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHH
Q 017886          161 TASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV  240 (364)
Q Consensus       161 i~g~~~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l  240 (364)
                      +.||++.++||++++|++++++++..+      .+...|+++|..+.+.+++|.+..+|+++++||||+.++|++|++.|
T Consensus       174 i~g~a~~~~VV~~~~e~~~l~~~~~~~------~~~~~~~~~f~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~iv~~l  247 (387)
T PRK13371        174 TSSFAGTYLVVLDLEEAQYVADYILGG------GDREEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIGKLF  247 (387)
T ss_pred             eccccCceEEECCHHHHHHHhhhhccc------cchhhhhhhhhhcccccCCccCCCccEEEEECCCCcHHHHHHHHHHH
Confidence            999997789999999999998877665      35577899999999999887656689999999999999999999999


Q ss_pred             HHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccC
Q 017886          241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG  320 (364)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~  320 (364)
                      +++|+.++++.+.+.+++++||||+||++||+|+++||.+++|+||||||+|||||+||++||++.|+++||||+++||+
T Consensus       248 ~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~  327 (387)
T PRK13371        248 ERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERIL  327 (387)
T ss_pred             HHhhhhhcCCccccccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcC
Confidence            99999998876667799999999999999999999998347999999999999999999999999999999999999999


Q ss_pred             CCCcchhhhccchhhhhcccCCCCCCEEEEEeCCCCCHHHHhcC
Q 017886          321 PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVISSA  364 (364)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~e~  364 (364)
                      +++.|.|+....+..++++||+++..+||||||||||+|+|++|
T Consensus       328 ~~~~i~h~~~~~~~~~t~~wl~~~~~~VGITAGASTP~~lI~eV  371 (387)
T PRK13371        328 SGNSIEHKPLGKELVVTENWLPEGPVTVGITSGASTPDKVVEDV  371 (387)
T ss_pred             CccccccccccchhhhhhhhhccCCCEEEEecCCCCCHHHHHHH
Confidence            98889999665666788999955688999999999999999986

>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional

Probab=100.00  E-value=5.5e-100  Score=733.13  Aligned_cols=273  Identities=33%  Similarity=0.557  Sum_probs=254.3

Q ss_pred             eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 017886           25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA  104 (364)
Q Consensus        25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrA  104 (364)
                      |+|++|+++||||||+|||++|+++++.+++++||+||||||||+|+++|+++||.++++    ++++++++|++|||||
T Consensus         1 M~I~lA~~~GFC~GV~rAi~~a~~~~~~~~~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~----~~~~~v~~~~~ViirA   76 (281)
T PRK12360          1 MKILIAKNAGFCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEE----SEIDSLKEGDVVIIRS   76 (281)
T ss_pred             CEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEecCCcCCHHHHHHHHHCcCEEECc----CchhhCCCCCEEEEeC
Confidence            899999999999999999999999876654578999999999999999999999999932    1478888899999999


Q ss_pred             CCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhHHHhhhh
Q 017886          105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY  183 (364)
Q Consensus       105 HGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~  183 (364)
                      ||+||+++++|+++|+.|||||||||+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.  
T Consensus        77 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~--  154 (281)
T PRK12360         77 HGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVENIP--  154 (281)
T ss_pred             CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhhCc--
Confidence            99999999999999999999999999999999999999999999999999999999999997 578999999987641  


Q ss_pred             hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccc
Q 017886          184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI  263 (364)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTI  263 (364)
                                                      ..+++++++||||+.++|++|++.|+++          .++++++|||
T Consensus       155 --------------------------------~~~kv~~vsQTT~~~~~~~~iv~~l~~~----------~~~~~v~~TI  192 (281)
T PRK12360        155 --------------------------------FLDKACVVAQTTIIPELWEDILNVIKLK----------SKELVFFNTI  192 (281)
T ss_pred             --------------------------------cccCEEEEECCCCcHHHHHHHHHHHHHh----------CcccccCCCc
Confidence                                            1268999999999999999999999873          2457889999


Q ss_pred             cHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCC
Q 017886          264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK  343 (364)
Q Consensus       264 C~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~  343 (364)
                      |+||++||+|+++|| +++|+||||||+|||||+||++||++.|+++||||+++||++                 +|| .
T Consensus       193 C~aT~~RQ~a~~~La-~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~-----------------~~~-~  253 (281)
T PRK12360        193 CSATKKRQESAKELS-KEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDL-----------------EML-K  253 (281)
T ss_pred             chhhhhHHHHHHHHH-HhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCH-----------------HHh-C
Confidence            999999999999999 789999999999999999999999999999999999999999                 999 6


Q ss_pred             CCCEEEEEeCCCCCHHHHhcC
Q 017886          344 GQITIGITSGASTPDKVISSA  364 (364)
Q Consensus       344 ~~~~VGITAGASTP~~lI~e~  364 (364)
                      ++.+||||||||||+|+|++|
T Consensus       254 ~~~~VGitaGASTP~~li~eV  274 (281)
T PRK12360        254 DYKIIGITAGASTPDWIIEEV  274 (281)
T ss_pred             CCCEEEEEccCCCCHHHHHHH
Confidence            899999999999999999985

>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)

Probab=100.00  E-value=1.7e-99  Score=729.33  Aligned_cols=271  Identities=40%  Similarity=0.635  Sum_probs=251.3

Q ss_pred             EEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCc-EEecCCccccccccccCCCEEEEcC
Q 017886           26 KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV-QNIPVEEGKKQFDVVNKGDVVVLPA  104 (364)
Q Consensus        26 kI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv-~~v~~~~~~~~~~~l~~g~~VIIrA  104 (364)
                      +|++|+++||||||+|||++|++++++. +++||+||||||||||+++|+++|| .+++      +++++++|++|||||
T Consensus         1 ~I~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~------~~~~v~~~~~ViirA   73 (280)
T TIGR00216         1 DIILAKPRGFCFGVKRAIQMAEEALKES-GKPVYTLGPIVHNPQVVERLRERGVFFFLE------DLDEVAAGDTVIIRA   73 (280)
T ss_pred             CEEEccCCCCCccHHHHHHHHHHHHhhc-CCCeEEecCCccCHHHHHHHHHCCCEEeec------CcccCCCCCEEEEeC
Confidence            5899999999999999999999988653 5789999999999999999999997 7776      468888899999999


Q ss_pred             CCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhHHHhhhh
Q 017886          105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY  183 (364)
Q Consensus       105 HGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~  183 (364)
                      ||+||+++++|+++|+.|||||||||+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.  
T Consensus        74 HGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~--  151 (280)
T TIGR00216        74 HGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENFK--  151 (280)
T ss_pred             CCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhCC--
Confidence            99999999999999999999999999999999999999999999999999999999999997 578999999987641  


Q ss_pred             hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccc
Q 017886          184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI  263 (364)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTI  263 (364)
                                                      ..+++++++||||+.++|++|+++|+++||.        .++.++|||
T Consensus       152 --------------------------------~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~--------~~~~~~nTI  191 (280)
T TIGR00216       152 --------------------------------VEDLLGVVSQTTLSQEDTKEIVAELKARVPQ--------KEVPVFNTI  191 (280)
T ss_pred             --------------------------------CCCcEEEEEcCCCcHHHHHHHHHHHHHhCCC--------cCCCCCCCc
Confidence                                            1258999999999999999999999885432        346789999


Q ss_pred             cHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCC
Q 017886          264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK  343 (364)
Q Consensus       264 C~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~  343 (364)
                      |+||++||+|+++|| +++|+||||||+|||||+||++||++.|+++||||+++||++                 +|| .
T Consensus       192 C~AT~~RQ~a~~~la-~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~-----------------~~l-~  252 (280)
T TIGR00216       192 CYATQNRQDAVKELA-PEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPE-----------------EWL-K  252 (280)
T ss_pred             ccccHHHHHHHHHHH-hhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCH-----------------HHh-C
Confidence            999999999999999 789999999999999999999999999999999999999999                 999 6


Q ss_pred             CCCEEEEEeCCCCCHHHHhcC
Q 017886          344 GQITIGITSGASTPDKVISSA  364 (364)
Q Consensus       344 ~~~~VGITAGASTP~~lI~e~  364 (364)
                      ++.+||||||||||+|+|++|
T Consensus       253 ~~~~VGiTAGASTP~~li~eV  273 (280)
T TIGR00216       253 GVKVVGITAGASTPDWIIEEV  273 (280)
T ss_pred             CCCEEEEEecCCCCHHHHHHH
Confidence            899999999999999999986

Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.

>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed

Probab=100.00  E-value=4e-99  Score=732.26  Aligned_cols=272  Identities=33%  Similarity=0.558  Sum_probs=252.9

Q ss_pred             eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 017886           25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA  104 (364)
Q Consensus        25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrA  104 (364)
                      |+|++|+++||||||+|||++|+++++++ +++|||||||||||||+++|+++||.++++      ++++++|++|||||
T Consensus         1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iytlG~iIHN~~vv~~L~~~GV~~v~~------~~~v~~~~~ViirA   73 (298)
T PRK01045          1 MKILLANPRGFCAGVDRAIEIVERALEKY-GAPIYVRHEIVHNRYVVERLEKKGAIFVEE------LDEVPDGAIVIFSA   73 (298)
T ss_pred             CEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCeEEEecCccCHHHHHHHHHCCCEEecC------cccCCCCCEEEEeC
Confidence            89999999999999999999999987654 478999999999999999999999999984      67888899999999


Q ss_pred             CCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhHHHhhhh
Q 017886          105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY  183 (364)
Q Consensus       105 HGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~  183 (364)
                      ||+||+++++|+++|+.|||||||||+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.  
T Consensus        74 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l~--  151 (298)
T PRK01045         74 HGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKLE--  151 (298)
T ss_pred             CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhcc--
Confidence            99999999999999999999999999999999999999999999999999999999999997 578999999987651  


Q ss_pred             hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc--cc
Q 017886          184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS--FN  261 (364)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v--~n  261 (364)
                                                   + ...++++++|||||+.++|++|+++|+++    +      +++++  +|
T Consensus       152 -----------------------------~-~~~~~v~vvsQTT~~~~~~~~i~~~l~~~----~------~~~~v~~~n  191 (298)
T PRK01045        152 -----------------------------V-KDPDKLALVTQTTLSVDDTAEIIAALKER----F------PEIQGPPKD  191 (298)
T ss_pred             -----------------------------c-CCCCcEEEEEcCCCcHHHHHHHHHHHHHh----C------cCcccCCCC
Confidence                                         0 12368999999999999999999999873    2      34556  99


Q ss_pred             cccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccC
Q 017886          262 TICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWL  341 (364)
Q Consensus       262 TIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl  341 (364)
                      |||+||++||+|+++|| +++|+||||||+|||||+||++||++.|+++||||+++||++                 +||
T Consensus       192 TIC~aT~~RQ~a~~~La-~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~~-----------------~~l  253 (298)
T PRK01045        192 DICYATQNRQEAVKELA-PQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEIDP-----------------EWF  253 (298)
T ss_pred             CcchhhHHHHHHHHHHH-hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCcH-----------------HHh
Confidence            99999999999999999 799999999999999999999999999999999999999999                 999


Q ss_pred             CCCCCEEEEEeCCCCCHHHHhcC
Q 017886          342 PKGQITIGITSGASTPDKVISSA  364 (364)
Q Consensus       342 ~~~~~~VGITAGASTP~~lI~e~  364 (364)
                       .++.+||||||||||+|+|++|
T Consensus       254 -~~~~~VGitaGASTP~~li~eV  275 (298)
T PRK01045        254 -KGVKTVGVTAGASAPEWLVQEV  275 (298)
T ss_pred             -cCCCEEEEEecCCCCHHHHHHH
Confidence             7999999999999999999985

>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]

Probab=100.00  E-value=5.7e-98  Score=712.90  Aligned_cols=275  Identities=35%  Similarity=0.583  Sum_probs=256.0

Q ss_pred             ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEc
Q 017886           24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP  103 (364)
Q Consensus        24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIr  103 (364)
                      .|+|+||+|+||||||+|||++|++++++++ +|||++||||||++|+++|+++|+.|++      +++++|+|++||||
T Consensus         1 ~~~I~lA~prGFCaGV~RAI~ive~al~~~g-~pIyv~~eIVHN~~Vv~~L~~~g~~fve------~l~e~p~~~~VIfs   73 (294)
T COG0761           1 MMKILLAKPRGFCAGVDRAIQIVERALEEYG-APIYVRHEIVHNRYVVDRLREKGAIFVE------ELDEVPDGATVIFS   73 (294)
T ss_pred             CceEEEecCCccchhHHHHHHHHHHHHHHcC-CCeEEEeccccCHHHHHHHHHcCCEecc------ccccCCCCCEEEEE
Confidence            4899999999999999999999999999984 7899999999999999999999999997      46889999999999


Q ss_pred             CCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecc-cCC-cEEEEcChhhHHHhh
Q 017886          104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS-FAG-KYIIVKNMKEAEYVC  181 (364)
Q Consensus       104 AHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g-~~~-~~~vv~~~~e~~~~~  181 (364)
                      ||||||++++.|++||++++|||||+|+|+|+.|++++++||+||+||+++||||+|+.| |++ ..+++++++|+..+.
T Consensus        74 AHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~  153 (294)
T COG0761          74 AHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLK  153 (294)
T ss_pred             CCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999 544 389999999997751


Q ss_pred             hhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccc
Q 017886          182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFN  261 (364)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~n  261 (364)
                                                   ..   ..+++++++|||+|.++|.+|+++|+.+||+.        ++.++|
T Consensus       154 -----------------------------~~---~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~--------~~~~~~  193 (294)
T COG0761         154 -----------------------------VQ---LPDKLAFVTQTTLSVDDTAEIVAALKERFPKI--------EVPPFN  193 (294)
T ss_pred             -----------------------------cC---CcccEEEEeeeecCHHHHHHHHHHHHHhCccc--------cCCccc
Confidence                                         11   12489999999999999999999999865543        466899


Q ss_pred             cccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccC
Q 017886          262 TICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWL  341 (364)
Q Consensus       262 TIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl  341 (364)
                      ||||||++||+|+++|| .+||+||||||+|||||+||+|||++.|.++|+|++++||++                 +||
T Consensus       194 ~ICyAT~nRQ~Avk~la-~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~-----------------~w~  255 (294)
T COG0761         194 DICYATQNRQDAVKELA-PEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDP-----------------EWL  255 (294)
T ss_pred             ccchhhhhHHHHHHHHh-hcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCH-----------------HHh
Confidence            99999999999999999 789999999999999999999999999999999999999999                 999


Q ss_pred             CCCCCEEEEEeCCCCCHHHHhcC
Q 017886          342 PKGQITIGITSGASTPDKVISSA  364 (364)
Q Consensus       342 ~~~~~~VGITAGASTP~~lI~e~  364 (364)
                       .+..+||||||||||||||++|
T Consensus       256 -~~~~~VGvTAGAStPd~lV~~V  277 (294)
T COG0761         256 -KGVKTVGVTAGASTPDWLVQEV  277 (294)
T ss_pred             -cCccEEEEecCCCCCHHHHHHH
Confidence             6899999999999999999875

>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids

Probab=100.00  E-value=4.9e-99  Score=727.04  Aligned_cols=272  Identities=39%  Similarity=0.627  Sum_probs=223.1

Q ss_pred             EEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCC
Q 017886           27 VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG  106 (364)
Q Consensus        27 I~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrAHG  106 (364)
                      |++|+++||||||+|||++|++++++++ ++||+||||||||+|+++|+++||.++++      ++++++|++|||||||
T Consensus         1 I~lA~~~GfC~GV~rAi~~a~~~~~~~~-~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~------~~~~~~g~~ViirAHG   73 (281)
T PF02401_consen    1 IILAKPAGFCFGVKRAIEIAEEALEEYP-GPVYTLGPIIHNPQVVERLEKRGVKVVDD------IDEVPEGDTVIIRAHG   73 (281)
T ss_dssp             EEE-TT-SS-HHHHHHHHHHHHHCCCHS-S-EEECS-SSS-HHHHHHHHHCTEEEESS------GCGS-TTEEEEE-TT-
T ss_pred             CEecCCCCcCccHHHHHHHHHHHHHhcC-CCEEEecCcccCHHHHHHHHHCCCEEecC------ccccCCCCEEEEeCCC
Confidence            6899999999999999999999998754 59999999999999999999999999985      5788899999999999


Q ss_pred             CCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC--cEEEEcChhhHHHhhhhh
Q 017886          107 AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG--KYIIVKNMKEAEYVCDYI  184 (364)
Q Consensus       107 v~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~--~~~vv~~~~e~~~~~~~~  184 (364)
                      +||+++++|+++|+.|||||||||+|+|++|++++++||+|||+|+++||||+|++||++  .+++|++++|++.+.   
T Consensus        74 v~~~~~~~l~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~~vv~~~~~~~~l~---  150 (281)
T PF02401_consen   74 VPPEVYEELKERGLEVIDATCPFVKKIHKIVRKYAKEGYQIVIIGDKNHPEVIGILGYAPEEKAIVVESPEDVEKLP---  150 (281)
T ss_dssp             --HHHHHHHHHTTEEEEE---HHHHHHHHHHHHHHHCT-EEEEES-TT-HHHHHHHCCHHTS-EEEESSHHHHHHGG---
T ss_pred             CCHHHHHHHHHcCCEEEECCChhHHHHHHHHHHHHhcCCEEEEECCCCCceEEEecccccCCceEEeCChhhhcccC---
Confidence            999999999999999999999999999999999999999999999999999999999997  689999999987651   


Q ss_pred             cCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccccccc
Q 017886          185 LGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC  264 (364)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC  264 (364)
                                                   ...++|+++||||||+.++|++|+++|+++++..        ...++||||
T Consensus       151 -----------------------------~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~--------~~~~~nTIC  193 (281)
T PF02401_consen  151 -----------------------------ISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPEL--------EGPVFNTIC  193 (281)
T ss_dssp             -----------------------------GSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCE--------E-SCC-S--
T ss_pred             -----------------------------CCCCCeEEEEEeecccHHHHHHHHHHHHHhCccc--------cCCCCCCCC
Confidence                                         1123699999999999999999999998843332        124899999


Q ss_pred             HHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCCC
Q 017886          265 DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKG  344 (364)
Q Consensus       265 ~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~~  344 (364)
                      +||++||+|+++|| ++||+||||||+|||||+||||+|++.|+++||||+++||++                 +|| ++
T Consensus       194 ~aT~~RQ~a~~~La-~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el~~-----------------~~l-~~  254 (281)
T PF02401_consen  194 YATQNRQEAARELA-KEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADELDP-----------------EWL-KG  254 (281)
T ss_dssp             CHHHHHHHHHHHHH-CCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG--H-----------------HHH-TT
T ss_pred             HhHHHHHHHHHHHH-hhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccccCH-----------------hHh-CC
Confidence            99999999999999 799999999999999999999999999999999999999998                 999 78


Q ss_pred             CCEEEEEeCCCCCHHHHhcC
Q 017886          345 QITIGITSGASTPDKVISSA  364 (364)
Q Consensus       345 ~~~VGITAGASTP~~lI~e~  364 (364)
                      +++||||||||||+|+|++|
T Consensus       255 ~~~VGItaGASTP~~ii~eV  274 (281)
T PF02401_consen  255 VKKVGITAGASTPDWIIEEV  274 (281)
T ss_dssp             -SEEEEEE-TTS-HHHHHHH
T ss_pred             CCEEEEEccCCCCHHHHHHH
Confidence            99999999999999999985

The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....

>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed

Probab=100.00  E-value=6.2e-91  Score=735.73  Aligned_cols=270  Identities=34%  Similarity=0.562  Sum_probs=253.4

Q ss_pred             eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 017886           25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA  104 (364)
Q Consensus        25 mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIrA  104 (364)
                      |+|++|+++||||||+|||++|+++++++ +++|||||||||||||+++|+++||.++++      ++++++|++|||||
T Consensus         1 m~i~~a~~~GfC~GV~rAi~~~~~~~~~~-~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~------~~~~~~~~~vii~a   73 (647)
T PRK00087          1 MEIILAKKAGFCFGVKRAVDTAIKTAEEL-KGKIYTLGPLIHNNQVVEKLKKKGIKPIED------IDELNEGDTIIIRS   73 (647)
T ss_pred             CEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCcCCHHHHHHHHHCCCEEeCC------HhhCCCCCEEEEeC
Confidence            89999999999999999999999987755 478999999999999999999999999974      68888899999999


Q ss_pred             CCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhHHHhhhh
Q 017886          105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY  183 (364)
Q Consensus       105 HGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~  183 (364)
                      ||+||+++++|+++|+.|||||||+|+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.  
T Consensus        74 HG~~~~~~~~~~~~~~~viDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~g~~~~~~~vv~~~~~~~~~~--  151 (647)
T PRK00087         74 HGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAEKLP--  151 (647)
T ss_pred             CCCCHHHHHHHHHCCCeEEECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccccCCCEEEECCHHHHhhCC--
Confidence            99999999999999999999999999999999999999999999999999999999999997 578999999987641  


Q ss_pred             hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccc
Q 017886          184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI  263 (364)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTI  263 (364)
                                                      ..+++++++||||+.++|++|++.|++    +      .++++++|||
T Consensus       152 --------------------------------~~~~~~~~~QTT~~~~~~~~~~~~l~~----~------~~~~~~~~ti  189 (647)
T PRK00087        152 --------------------------------FDKKICVVSQTTEKQENFEKVLKELKK----K------GKEVKVFNTI  189 (647)
T ss_pred             --------------------------------CCCCEEEEEcCCCcHHHHHHHHHHHHH----h------CCCcccCCCc
Confidence                                            125899999999999999999999987    3      2457889999


Q ss_pred             cHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcccCCC
Q 017886          264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK  343 (364)
Q Consensus       264 C~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~wl~~  343 (364)
                      |+||++||+|+++|| +++|+||||||+|||||+||++||++.|+||||||+++||++                 +|| .
T Consensus       190 C~at~~Rq~a~~~la-~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~-----------------~~~-~  250 (647)
T PRK00087        190 CNATEVRQEAAEKLA-KKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPE-----------------EWF-K  250 (647)
T ss_pred             chhhhhHHHHHHHHH-hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCH-----------------HHh-C
Confidence            999999999999999 799999999999999999999999999999999999999999                 999 6


Q ss_pred             CCCEEEEEeCCCCCHHHHhcC
Q 017886          344 GQITIGITSGASTPDKVISSA  364 (364)
Q Consensus       344 ~~~~VGITAGASTP~~lI~e~  364 (364)
                      ++.+||||||||||+|+|++|
T Consensus       251 ~~~~vgitagaStP~~~i~~v  271 (647)
T PRK00087        251 GVKIIGVTAGASTPDWIIEEV  271 (647)
T ss_pred             CCCEEEEEeccCCCHHHHHHH
Confidence            899999999999999999985

>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids

Probab=96.53  E-value=0.049  Score=53.57  Aligned_cols=170  Identities=19%  Similarity=0.147  Sum_probs=113.4

Q ss_pred             CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHH---cCcEEecCCccccccccccC---CCEEEEcCCCCC
Q 017886           35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE---MAVQNIPVEEGKKQFDVVNK---GDVVVLPAFGAA  108 (364)
Q Consensus        35 FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~---~Gv~~v~~~~~~~~~~~l~~---g~~VIIrAHGv~  108 (364)
                      =|.=|+++-+.+.+..++  +-.|.+.|+-=| |+|..-+..   ....++++.++   ++.++.   ....++.=--.+
T Consensus        93 TCP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~~vv~~~~~---~~~l~~~~~~kv~vvsQTT~~  166 (281)
T PF02401_consen   93 TCPFVKKIHKIVRKYAKE--GYQIVIIGDKNH-PEVIGILGYAPEEKAIVVESPED---VEKLPISDPKKVAVVSQTTQS  166 (281)
T ss_dssp             --HHHHHHHHHHHHHHHC--T-EEEEES-TT--HHHHHHHCCHHTS-EEEESSHHH---HHHGGGSSTTCEEEEE-TTS-
T ss_pred             CChhHHHHHHHHHHHHhc--CCEEEEECCCCC-ceEEEecccccCCceEEeCChhh---hcccCCCCCCeEEEEEeeccc
Confidence            377788888888887765  357999999666 555554421   34566665432   333332   346677777777


Q ss_pred             H----HHHHHHHhcCCcEE----eccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhh
Q 017886          109 V----EEMVTLNNKNVQIV----DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKE  176 (364)
Q Consensus       109 ~----~v~~~l~~~g~~ii----DaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e  176 (364)
                      .    ++.+.|+++.-.+.    |+-|+--..=|..+++++++-.-+|++|.++-.-+.=+...|    ..++.|++.+|
T Consensus       167 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~e  246 (281)
T PF02401_consen  167 VEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADE  246 (281)
T ss_dssp             HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG
T ss_pred             HHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccc
Confidence            6    46677888887776    999999999999999999999999999999999888876544    46899999999


Q ss_pred             HHHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886          177 AEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK  242 (364)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~  242 (364)
                      +..-                     .|+           ..++||+.+=+.=+.+..++++++|++
T Consensus       247 l~~~---------------------~l~-----------~~~~VGItaGASTP~~ii~eVi~~l~~  280 (281)
T PF02401_consen  247 LDPE---------------------WLK-----------GVKKVGITAGASTPDWIIEEVIDRLEE  280 (281)
T ss_dssp             --HH---------------------HHT-----------T-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred             cCHh---------------------HhC-----------CCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence            8531                     111           125999999999999999999988864

The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....

>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed

Probab=94.29  E-value=0.55  Score=46.66  Aligned_cols=170  Identities=13%  Similarity=0.164  Sum_probs=118.9

Q ss_pred             CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc--CcEEecCCccccccccc--cC-CCEEEEcCCCCCH
Q 017886           35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVV--NK-GDVVVLPAFGAAV  109 (364)
Q Consensus        35 FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~l--~~-g~~VIIrAHGv~~  109 (364)
                      =|.=|+++=+.+.+..++  +-.|.++|+==| |+|..-+..-  ...++++.+   +++.+  +. ....++.=--.+.
T Consensus        95 TCP~V~k~~~~v~~~~~~--Gy~vvi~G~~~H-pEv~gi~g~~~~~~~vv~~~~---e~~~l~~~~~~~v~vvsQTT~~~  168 (298)
T PRK01045         95 TCPLVTKVHKEVARMSRE--GYEIILIGHKGH-PEVEGTMGQAPGGVYLVESPE---DVAKLEVKDPDKLALVTQTTLSV  168 (298)
T ss_pred             CCccchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEEcCHH---HHhhcccCCCCcEEEEEcCCCcH
Confidence            377777777777777665  346888888655 3343333221  134454432   23333  22 3345555555555


Q ss_pred             H----HHHHHHhcC--CcE--EeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhH
Q 017886          110 E----EMVTLNNKN--VQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEA  177 (364)
Q Consensus       110 ~----v~~~l~~~g--~~i--iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~  177 (364)
                      +    +.+.|+++.  +.+  .|+-|.-...=|+.+++++++=.-+|++|.++-.-+.=+...|    ..++.|++.+|+
T Consensus       169 ~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el  248 (298)
T PRK01045        169 DDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEI  248 (298)
T ss_pred             HHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHC
Confidence            5    455566555  777  9999999999999999999999999999999999888776544    368899999997


Q ss_pred             HHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886          178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK  242 (364)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~  242 (364)
                      +.-                  +   |        .   ..++||+.+=+.=+.+..++++.+|+.
T Consensus       249 ~~~------------------~---l--------~---~~~~VGitaGASTP~~li~eV~~~l~~  281 (298)
T PRK01045        249 DPE------------------W---F--------K---GVKTVGVTAGASAPEWLVQEVIARLKE  281 (298)
T ss_pred             cHH------------------H---h--------c---CCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence            520                  1   1        1   126899999999999999999999876

>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)

Probab=92.85  E-value=1.1  Score=44.20  Aligned_cols=169  Identities=15%  Similarity=0.106  Sum_probs=115.4

Q ss_pred             cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHH--cCcEEecCCccccccccccC-CCEEEEcCCCCCHH--
Q 017886           36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE--  110 (364)
Q Consensus        36 C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~--~Gv~~v~~~~~~~~~~~l~~-g~~VIIrAHGv~~~--  110 (364)
                      |.=|+++-..+.+..++  +-.|.+.|+==| |+|..-+..  ....++++.+   +++.++. ....++.=--.+.+  
T Consensus        96 CP~V~kv~~~v~~~~~~--Gy~iiiiG~~~H-pEv~gi~g~~~~~~~vv~~~~---d~~~l~~~~~v~vvsQTT~~~~~~  169 (280)
T TIGR00216        96 CPLVTKVHNAVKKYAKE--GYHVILIGKKNH-PEVIGTRGYAPDKAIVVETLE---DLENFKVEDLLGVVSQTTLSQEDT  169 (280)
T ss_pred             CcccHHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEECCHH---HHHhCCCCCcEEEEEcCCCcHHHH
Confidence            66677777777666664  346777777555 333332221  1244455432   3344432 23445554445544  


Q ss_pred             --HHHHHHhcC----CcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHHh
Q 017886          111 --EMVTLNNKN----VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYV  180 (364)
Q Consensus       111 --v~~~l~~~g----~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~  180 (364)
                        +.+.|+++.    +.+.|+-|.-...=|+.+++++++=.-+|++|.++-.-+.=+...|    ..++.|++.+|++. 
T Consensus       170 ~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~-  248 (280)
T TIGR00216       170 KEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPE-  248 (280)
T ss_pred             HHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCH-
Confidence              445566666    7889999999999999999999999999999999999888776444    35889999999752 


Q ss_pred             hhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886          181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK  242 (364)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~  242 (364)
                                          +.|        +   ..++||+.+=+.=+.+..++++++|++
T Consensus       249 --------------------~~l--------~---~~~~VGiTAGASTP~~li~eVi~~l~~  279 (280)
T TIGR00216       249 --------------------EWL--------K---GVKVVGITAGASTPDWIIEEVIRKIKE  279 (280)
T ss_pred             --------------------HHh--------C---CCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence                                111        1   125899999999999999999888753

Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.

>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional

Probab=92.07  E-value=1.4  Score=43.46  Aligned_cols=170  Identities=17%  Similarity=0.130  Sum_probs=114.2

Q ss_pred             CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc--CcEEecCCccccccccccC-CCEEEEcCCCCCHHH
Q 017886           35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVEE  111 (364)
Q Consensus        35 FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~l~~-g~~VIIrAHGv~~~v  111 (364)
                      =|.=|+++-..+.+..++  +-.|...|+==| |+|..-+..-  ...++++.+   +++.++. ....++.=--.+.+.
T Consensus        98 TCP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~vv~~~~---d~~~l~~~~kv~~vsQTT~~~~~  171 (281)
T PRK12360         98 TCPFVKKIQNIVEEYYNK--GYSIIIVGDKNH-PEVIGINGWCDNSAYIVNSIE---EVENIPFLDKACVVAQTTIIPEL  171 (281)
T ss_pred             CCccchHHHHHHHHHHhC--CCEEEEEcCCCC-ceeeEeccCcCCCeEEECCHH---HHhhCccccCEEEEECCCCcHHH
Confidence            366677777777776664  346777787544 3333322211  234455432   2333332 234455544555544


Q ss_pred             ----HHHHHhc--CCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHHhh
Q 017886          112 ----MVTLNNK--NVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVC  181 (364)
Q Consensus       112 ----~~~l~~~--g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~  181 (364)
                          .+.|+++  .+.+.|+-|.-...=|+.+++++++=..+|++|.++-.-+.=+...|    ..++.|++.+|++.  
T Consensus       172 ~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~--  249 (281)
T PRK12360        172 WEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDL--  249 (281)
T ss_pred             HHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCH--
Confidence                3445544  46679999999999999999999999999999999999888776444    35889999999742  


Q ss_pred             hhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886          182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK  242 (364)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~  242 (364)
                                         +.|        .   ..++||+.+=+.=+.+..++++++|++
T Consensus       250 -------------------~~~--------~---~~~~VGitaGASTP~~li~eV~~~l~~  280 (281)
T PRK12360        250 -------------------EML--------K---DYKIIGITAGASTPDWIIEEVIKKIKN  280 (281)
T ss_pred             -------------------HHh--------C---CCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence                               011        1   126899999999999999999888753

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems

Probab=91.50  E-value=1.9  Score=38.65  Aligned_cols=90  Identities=17%  Similarity=0.216  Sum_probs=58.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886          219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH  298 (364)
Q Consensus       219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~r  298 (364)
                      +++++.+.+ ...-+..+.+-+++...+.      +-++.+.++-... ...++.++++.+..+|++|+.+...++- . 
T Consensus         1 ~ig~v~~~~-~~~~~~~~~~g~~~~~~~~------g~~l~~~~~~~~~-~~~~~~~~~~~~~~~d~ii~~~~~~~~~-~-   70 (264)
T cd01537           1 TIGVLVPDL-DNPFFAQVLKGIEEAAKAA------GYQVLLANSQNDA-EKQLSALENLIARGVDGIIIAPSDLTAP-T-   70 (264)
T ss_pred             CeEEEEcCC-CChHHHHHHHHHHHHHHHc------CCeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEecCCCcch-h-
Confidence            467888776 4455677777777643332      2345566665543 3345566666656899999877665543 3 


Q ss_pred             HHHHHHhhCCCeEEeCCCCc
Q 017886          299 LQEIAEDRGIPSYWIDSEKR  318 (364)
Q Consensus       299 L~eia~~~~~~t~~Ie~~~e  318 (364)
                      +++.+.+.+.|.+.+.+..+
T Consensus        71 ~~~~l~~~~ip~v~~~~~~~   90 (264)
T cd01537          71 IVKLARKAGIPVVLVDRDIP   90 (264)
T ss_pred             HHHHhhhcCCCEEEeccCCC
Confidence            67888888999988876643

Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem

>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]

Probab=87.78  E-value=6.3  Score=37.39  Aligned_cols=152  Identities=18%  Similarity=0.222  Sum_probs=89.5

Q ss_pred             ccchHHHHHHHcCCccc-ccceEE--------EEeCCCCCcccH---HHHHHHHHHHHhhCC-----CCceEEecccccC
Q 017886            5 YTSDIIKKLKENGFEYT-WGNVKV--------KLAESYGFCWGV---ERAVQIAYEARKQFP-----EEKIWITNEIIHN   67 (364)
Q Consensus         5 y~~~~~~~~~~~~~~~~-~~~mkI--------~lA~~~GFC~GV---~RAi~~a~~~~~~~~-----~~~vy~lG~iIHN   67 (364)
                      .-.++.+.|+..|+... +-.+++        .+..-.+|++=|   .+|++...+.+....     ..++|+.|+    
T Consensus        12 ~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~----   87 (248)
T COG1587          12 QAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGE----   87 (248)
T ss_pred             hhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhhcccccccCeEEEEcH----
Confidence            44678888888887332 222222        222222334311   455555555444322     258999995    


Q ss_pred             HHHHHHHHHcCcEEecCCccc---cccccc---cC-C-CEEEEcCCCCCHHHHHHHHhcCCcEEe-----ccCchhHHHH
Q 017886           68 PTVNKRLEEMAVQNIPVEEGK---KQFDVV---NK-G-DVVVLPAFGAAVEEMVTLNNKNVQIVD-----TTCPWVSKVW  134 (364)
Q Consensus        68 ~~Vv~~L~~~Gv~~v~~~~~~---~~~~~l---~~-g-~~VIIrAHGv~~~v~~~l~~~g~~iiD-----aTCP~V~kv~  134 (364)
                       ..-+.|++.|+...--+++.   ..++.+   .. | .++++|++|..+...+.|.++|..+..     ..+|... .+
T Consensus        88 -~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~-~~  165 (248)
T COG1587          88 -KTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLD-EA  165 (248)
T ss_pred             -HHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCcc-HH
Confidence             67799999998765433211   112222   22 2 456888888888999999999998844     3334444 44


Q ss_pred             HHHHHHhhCCCeEEEEecCCCceeeeecccCCcEEEEcChhhHHHhhhh
Q 017886          135 TSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDY  183 (364)
Q Consensus       135 ~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~~~~  183 (364)
                      .....+..+++                     +++++.|...++.+...
T Consensus       166 ~~~~~~~~~~~---------------------d~v~ftS~~~v~~~~~~  193 (248)
T COG1587         166 TLIELLKLGEV---------------------DAVVFTSSSAVRALLAL  193 (248)
T ss_pred             HHHHHHHhCCC---------------------CEEEEeCHHHHHHHHHH
Confidence            44555544443                     35667777777766443

>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional

Probab=85.79  E-value=7.8  Score=40.03  Aligned_cols=110  Identities=13%  Similarity=0.067  Sum_probs=75.4

Q ss_pred             CCcEEeccCchhHHHHHHHHHHhh-CCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHHhhhhhcCCCCCCCC
Q 017886          119 NVQIVDTTCPWVSKVWTSVEKHKK-GDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSS  193 (364)
Q Consensus       119 g~~iiDaTCP~V~kv~~~v~~~~~-~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~~~~~~~~~~~~~  193 (364)
                      .+.+.|+-|.-...=|+.++++++ +-.-+|+||.++-.-+.=+.-.|    ..++.|++.+|+..- +-|     .|.+
T Consensus       263 ~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~~~-~~i-----~h~~  336 (387)
T PRK13371        263 HFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERILSG-NSI-----EHKP  336 (387)
T ss_pred             cccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcCCc-ccc-----cccc
Confidence            678899999999999999999986 68899999999888777665333    357899999987531 000     0000


Q ss_pred             ChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886          194 STKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK  242 (364)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~  242 (364)
                      -..+ ..+ -.+|+    +.  ..++||+.+=+.-+....++++++|+.
T Consensus       337 ~~~~-~~~-t~~wl----~~--~~~~VGITAGASTP~~lI~eVi~~l~~  377 (387)
T PRK13371        337 LGKE-LVV-TENWL----PE--GPVTVGITSGASTPDKVVEDVIEKIFA  377 (387)
T ss_pred             ccch-hhh-hhhhh----cc--CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence            0000 000 00011    10  125899999999999999999999876

>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed

Probab=84.98  E-value=6.2  Score=43.02  Aligned_cols=170  Identities=18%  Similarity=0.130  Sum_probs=118.4

Q ss_pred             CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc--CcEEecCCccccccccccC-CCEEEEcCCCCCHH-
Q 017886           35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE-  110 (364)
Q Consensus        35 FC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~l~~-g~~VIIrAHGv~~~-  110 (364)
                      =|.=|+++=+.|.+..++  +-.|...|+==| |+|..-+-.-  ...++++.+   +++.++. ....++.=--.+.+ 
T Consensus        95 TCP~V~k~~~~~~~~~~~--g~~ivi~G~~~H-pEv~g~~g~~~~~~~vv~~~~---~~~~~~~~~~~~~~~QTT~~~~~  168 (647)
T PRK00087         95 TCPFVKNIQKLAKKYYEE--GYQIVIVGDKNH-PEVIGINGWCNNSAIIVEDGE---EAEKLPFDKKICVVSQTTEKQEN  168 (647)
T ss_pred             CCcCchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccccCCCEEEECCHH---HHhhCCCCCCEEEEEcCCCcHHH
Confidence            477788888888777765  346888888655 3343332221  134555432   3333332 23445555555555 


Q ss_pred             ---HHHHHHhcC--CcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHHhh
Q 017886          111 ---EMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVC  181 (364)
Q Consensus       111 ---v~~~l~~~g--~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~  181 (364)
                         +.+.|+++.  +.+.|+-|.-...=|+.+++++++=..+|++|.++-.-+.=+...|    ..++.|++++|+..- 
T Consensus       169 ~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~~-  247 (647)
T PRK00087        169 FEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPEE-  247 (647)
T ss_pred             HHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCHH-
Confidence               455566544  6779999999999999999999999999999999999888776544    368899999997530 


Q ss_pred             hhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886          182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK  242 (364)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~  242 (364)
                                          .|        .   ..++||+.+=+.=+.+..++++.+|++
T Consensus       248 --------------------~~--------~---~~~~vgitagaStP~~~i~~v~~~l~~  277 (647)
T PRK00087        248 --------------------WF--------K---GVKIIGVTAGASTPDWIIEEVIKKMSE  277 (647)
T ss_pred             --------------------Hh--------C---CCCEEEEEeccCCCHHHHHHHHHHHHH
Confidence                                01        1   125899999999999999999998875

>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []

Probab=84.74  E-value=15  Score=33.54  Aligned_cols=149  Identities=14%  Similarity=0.167  Sum_probs=86.1

Q ss_pred             chHHHHHHHcCCcccccc-eEEEE-----------e-----CCCCCcccHHHHHHHHHHHHh-------hCCCCceEEec
Q 017886            7 SDIIKKLKENGFEYTWGN-VKVKL-----------A-----ESYGFCWGVERAVQIAYEARK-------QFPEEKIWITN   62 (364)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~-mkI~l-----------A-----~~~GFC~GV~RAi~~a~~~~~-------~~~~~~vy~lG   62 (364)
                      +++.+.|++.|+...+-. +++.-           .     ...++.|==.+|++...+.+.       ...+.++|+.|
T Consensus         1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG   80 (231)
T PF02602_consen    1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG   80 (231)
T ss_dssp             -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred             CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence            467788888886665543 34433           0     344455544555555443332       11135799988


Q ss_pred             ccccCHHHHHHHHHcCcEE--ecC-Ccccccc----c-cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccC---chhH
Q 017886           63 EIIHNPTVNKRLEEMAVQN--IPV-EEGKKQF----D-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC---PWVS  131 (364)
Q Consensus        63 ~iIHN~~Vv~~L~~~Gv~~--v~~-~~~~~~~----~-~l~~g~~VIIrAHGv~~~v~~~l~~~g~~iiDaTC---P~V~  131 (364)
                      +     ..-+.|++.|+..  +.. ....+.|    . .+..+..+++|+.+..+...+.|++.|+.|.-..|   |-..
T Consensus        81 ~-----~Ta~~l~~~G~~~~~~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~  155 (231)
T PF02602_consen   81 P-----KTAEALREYGFQPDFVPSSEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEE  155 (231)
T ss_dssp             H-----HHHHHHHHTT-EECEE-TTSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHH
T ss_pred             H-----HHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeeccccc
Confidence            5     6678999999997  443 1111112    2 22333467899999999999999999988743322   3333


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCCceeeeecccCCcEEEEcChhhHHHhh
Q 017886          132 KVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVC  181 (364)
Q Consensus       132 kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~~  181 (364)
                      ......+.+....+                     +++++.|+.-++.+.
T Consensus       156 ~~~~~~~~l~~~~~---------------------~~v~ftS~~~~~~~~  184 (231)
T PF02602_consen  156 LSPELKEALDRGEI---------------------DAVVFTSPSAVRAFL  184 (231)
T ss_dssp             HHHHHHHHHHHTTT---------------------SEEEESSHHHHHHHH
T ss_pred             chHHHHHHHHcCCC---------------------CEEEECCHHHHHHHH
Confidence            44444444444443                     456677777776553

The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=82.10  E-value=11  Score=34.37  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=56.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCCEEEEEcCCCCchhHH
Q 017886          220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH  298 (364)
Q Consensus       220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGGknSSNT~r  298 (364)
                      |+|+.-++-+. -|..+.+-+++...+. +     -++.+. .-+..+.++| +.++.+.+..+|++|| ....++.+..
T Consensus         1 I~vi~~~~~~~-~~~~~~~g~~~~a~~~-g-----~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv-~~~~~~~~~~   71 (257)
T PF13407_consen    1 IGVIVPSMDNP-FWQQVIKGAKAAAKEL-G-----YEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIV-SPVDPDSLAP   71 (257)
T ss_dssp             EEEEESSSSSH-HHHHHHHHHHHHHHHH-T-----CEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEE-ESSSTTTTHH
T ss_pred             cEEEeCCCCCH-HHHHHHHHHHHHHHHc-C-----CEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEe-cCCCHHHHHH
Confidence            35555555555 6777777777643332 2     223332 2345555666 4555555578999885 4555566678


Q ss_pred             HHHHHHhhCCCeEEeCCC
Q 017886          299 LQEIAEDRGIPSYWIDSE  316 (364)
Q Consensus       299 L~eia~~~~~~t~~Ie~~  316 (364)
                      +++-|++.|.|.+.+.+.
T Consensus        72 ~l~~~~~~gIpvv~~d~~   89 (257)
T PF13407_consen   72 FLEKAKAAGIPVVTVDSD   89 (257)
T ss_dssp             HHHHHHHTTSEEEEESST
T ss_pred             HHHHHhhcCceEEEEecc
Confidence            888899999999999998

...

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=80.84  E-value=7.4  Score=37.55  Aligned_cols=107  Identities=14%  Similarity=0.148  Sum_probs=67.2

Q ss_pred             HHHHHHHHHcCc---EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeccCchhHHHHHHHHHHhhC
Q 017886           68 PTVNKRLEEMAV---QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG  143 (364)
Q Consensus        68 ~~Vv~~L~~~Gv---~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~  143 (364)
                      +.+.+.|.++|.   .++.+- +...+..-..+..|.+-..|=..+..+.++++|+.. ||||=||-..+++.+.+..++
T Consensus        13 r~la~~L~~~g~v~~sv~t~~-g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~   91 (249)
T PF02571_consen   13 RKLAERLAEAGYVIVSVATSY-GGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRE   91 (249)
T ss_pred             HHHHHHHHhcCCEEEEEEhhh-hHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhh
Confidence            456677777774   333321 111111111233577777877778889999999875 999999999999999998775


Q ss_pred             -CCeEEEEecCCCceeeeecccCCcEEEEcChhhHHHh
Q 017886          144 -DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV  180 (364)
Q Consensus       144 -Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~  180 (364)
                       |-..+=+-.+.=....     ....+.+.|.+|+...
T Consensus        92 ~~ipylR~eRp~~~~~~-----~~~~~~v~~~~eA~~~  124 (249)
T PF02571_consen   92 LGIPYLRFERPSWQPEP-----DDNWHYVDSYEEAAEL  124 (249)
T ss_pred             cCcceEEEEcCCcccCC-----CCeEEEeCCHHHHHHH
Confidence             5555545443211000     1235677888887654

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily

Probab=80.67  E-value=13  Score=32.63  Aligned_cols=93  Identities=17%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHH
Q 017886          220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL  299 (364)
Q Consensus       220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL  299 (364)
                      |+++.-.......+..+.+.++..+.+. +   ..-++.++++-|.... -.+.+++++...+|++|..+..  .+...+
T Consensus         2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~ii~~~~~--~~~~~~   74 (269)
T cd01391           2 IGVLLPLSGSAPFGAQLLAGIELAAEEI-G---RGLEVILADSQSDPER-ALEALRDLIQQGVDGIIGPPSS--SSALAV   74 (269)
T ss_pred             ceEEeecCCCcHHHHHHHHHHHHHHHHh-C---CceEEEEecCCCCHHH-HHHHHHHHHHcCCCEEEecCCC--HHHHHH
Confidence            4444433213445666666666543332 0   1345678888887733 3344555664568888776554  344448


Q ss_pred             HHHHHhhCCCeEEeCCCCcc
Q 017886          300 QEIAEDRGIPSYWIDSEKRI  319 (364)
Q Consensus       300 ~eia~~~~~~t~~Ie~~~eL  319 (364)
                      .+.+.+.+.|.+.+....+.
T Consensus        75 ~~~~~~~~ip~v~~~~~~~~   94 (269)
T cd01391          75 VELAAAAGIPVVSLDATAPD   94 (269)
T ss_pred             HHHHHHcCCcEEEecCCCCc
Confidence            88888999999888776543

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	364
3dnf_A	297	Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diph		1e-24
4eb3_A	327	Crystal Structure Of Isph In Complex With Iso-hmbpp		4e-19
3f7t_A	328	Structure Of Active Isph Shows A Novel Fold With A		5e-19
3urk_A	324	Isph In Complex With Propynyl Diphosphate (1061) Le		5e-19
4h4c_A	323	Isph In Complex With (e)-4-fluoro-3-methylbut-2-eny		5e-19
3szu_A	328	Isph:hmbpp Complex Structure Of E126q Mutant Length		1e-18
3t0f_A	328	Isph:hmbpp (Substrate) Structure Of The E126d Mutan		1e-18
3t0g_A	328	Isph:hmbpp (Substrate) Structure Of The T167c Mutan		2e-18
3ke8_A	326	Crystal Structure Of Isph:hmbpp-Complex Length = 32		3e-18
3zgl_A	332	Crystal Structures Of Escherichia Coli Isph In Comp		3e-18

>pdb|3DNF|A Chain A, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate Reductase, The Terminal Enzyme Of The Non-mevalonate Pathway Length = 297

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 162/341 (47%), Gaps = 75/341 (21%)
Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           V + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V     
Sbjct: 2   VDIIIAEHAGFCFGVKRAVKLAEESLKE-SQGKVYTLGPIIHNPQEVNRLKNLGVFPSQG 60
Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
           EE K+       GD V++ + G   E+   L  K ++++D TCP+V  V  +V +  +  
Sbjct: 61  EEFKE-------GDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREG 113
Query: 145 YTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL 200
           Y  ++ G+ +H E + T  +     GK I+V+ +++              G +   E   
Sbjct: 114 YFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDI-------------GEALKHE--- 157
Query: 201 EKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISF 260
                             +VGI  QTT    + EE  K V   +     V+ V       
Sbjct: 158 ------------------RVGIVAQTT----QNEEFFKEVVGEIA--LWVKEVK----VI 189
Query: 261 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320
           NTIC+AT  RQ+++ K+  E VD+++++GG NS NT  L  I+++    +Y I++ + + 
Sbjct: 190 NTICNATSLRQESVKKLAPE-VDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQ 248
Query: 321 PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
           P                  W  +G   +GI++GASTPD +I
Sbjct: 249 P-----------------EWF-RGVKRVGISAGASTPDWII 271

>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp Length = 327

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 150/347 (43%), Gaps = 78/347 (22%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI 69
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 70  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 123
Query: 143 GDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEK 202
               SI+ G   H E   T    G+Y    N +   Y+ +                    
Sbjct: 124 RGEESILIGHAGHPEVEGT---MGQY---SNPEGGMYLVE-------------------- 157
Query: 203 FKKAVSKGFDPDVDLVKVGIAN--------QTTMLKGETEEIGKLVEKTMMRKFGVENVN 254
                     PD D+ K+ + N        QTT+   +T ++   + K   +  G     
Sbjct: 158 ---------SPD-DVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK-- 205
Query: 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314
                 + IC AT  RQ+A+ + + E+ +++LVVG  NSSN++ L E+A+  G  ++ ID
Sbjct: 206 ------DDICYATTNRQEAV-RALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLID 258
Query: 315 SEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
             K I                 +E W+ + +  +G+T+GAS PD ++
Sbjct: 259 DAKDI-----------------QEEWVKEVK-CVGVTAGASAPDILV 287

>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A [3fe-4s] Cluster In The Catalytic Centre Length = 328

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 150/347 (43%), Gaps = 78/347 (22%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI 69
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 70  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 123
Query: 143 GDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEK 202
               SI+ G   H E   T    G+Y    N +   Y+ +                    
Sbjct: 124 RGEESILIGHAGHPEVEGT---MGQY---SNPEGGMYLVE-------------------- 157
Query: 203 FKKAVSKGFDPDVDLVKVGIAN--------QTTMLKGETEEIGKLVEKTMMRKFGVENVN 254
                     PD D+ K+ + N        QTT+   +T ++   + K   +  G     
Sbjct: 158 ---------SPD-DVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK-- 205
Query: 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314
                 + IC AT  RQ+A+ + + E+ +++LVVG  NSSN++ L E+A+  G  ++ ID
Sbjct: 206 ------DDICYATTNRQEAV-RALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLID 258
Query: 315 SEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
             K I                 +E W+ + +  +G+T+GAS PD ++
Sbjct: 259 DAKDI-----------------QEEWVKEVK-CVGVTAGASAPDILV 287

>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061) Length = 324

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 150/347 (43%), Gaps = 78/347 (22%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 7   GSMQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI 65
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 66  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 119
Query: 143 GDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEK 202
               SI+ G   H E   T    G+Y    N +   Y+ +                    
Sbjct: 120 RGEESILIGHAGHPEVEGT---MGQY---SNPEGGMYLVE-------------------- 153
Query: 203 FKKAVSKGFDPDVDLVKVGIAN--------QTTMLKGETEEIGKLVEKTMMRKFGVENVN 254
                     PD D+ K+ + N        QTT+   +T ++   + K   +  G     
Sbjct: 154 ---------SPD-DVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK-- 201
Query: 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314
                 + IC AT  RQ+A+ + + E+ +++LVVG  NSSN++ L E+A+  G  ++ ID
Sbjct: 202 ------DDICYATTNRQEAV-RALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLID 254
Query: 315 SEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
             K I                 +E W+ + +  +G+T+GAS PD ++
Sbjct: 255 DAKDI-----------------QEEWVKEVK-CVGVTAGASAPDILV 283

>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl Diphosphate Length = 323

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 150/347 (43%), Gaps = 78/347 (22%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 7   GSMQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI 65
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 66  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 119
Query: 143 GDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEK 202
               SI+ G   H E   T    G+Y    N +   Y+ +                    
Sbjct: 120 RGEESILIGHAGHPEVEGT---MGQY---SNPEGGMYLVE-------------------- 153
Query: 203 FKKAVSKGFDPDVDLVKVGIAN--------QTTMLKGETEEIGKLVEKTMMRKFGVENVN 254
                     PD D+ K+ + N        QTT+   +T ++   + K   +  G     
Sbjct: 154 ---------SPD-DVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK-- 201
Query: 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314
                 + IC AT  RQ+A+ + + E+ +++LVVG  NSSN++ L E+A+  G  ++ ID
Sbjct: 202 ------DDICYATTNRQEAV-RALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLID 254
Query: 315 SEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
             K I                 +E W+ + +  +G+T+GAS PD ++
Sbjct: 255 DAKDI-----------------QEEWVKEVK-CVGVTAGASAPDILV 283

>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant Length = 328

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 150/347 (43%), Gaps = 78/347 (22%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI 69
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 70  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 123
Query: 143 GDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEK 202
               SI+ G   H +   T    G+Y    N +   Y+ +                    
Sbjct: 124 RGEESILIGHAGHPQVEGT---MGQY---SNPEGGMYLVE-------------------- 157
Query: 203 FKKAVSKGFDPDVDLVKVGIAN--------QTTMLKGETEEIGKLVEKTMMRKFGVENVN 254
                     PD D+ K+ + N        QTT+   +T ++   + K   +  G     
Sbjct: 158 ---------SPD-DVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK-- 205
Query: 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314
                 + IC AT  RQ+A+ + + E+ +++LVVG  NSSN++ L E+A+  G  ++ ID
Sbjct: 206 ------DDICYATTNRQEAV-RALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLID 258
Query: 315 SEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
             K I                 +E W+ + +  +G+T+GAS PD ++
Sbjct: 259 DAKDI-----------------QEEWVKEVK-CVGVTAGASAPDILV 287

>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant Length = 328

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 150/347 (43%), Gaps = 78/347 (22%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI 69
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 70  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 123
Query: 143 GDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEK 202
               SI+ G   H +   T    G+Y    N +   Y+ +                    
Sbjct: 124 RGEESILIGHAGHPDVEGT---MGQY---SNPEGGMYLVE-------------------- 157
Query: 203 FKKAVSKGFDPDVDLVKVGIAN--------QTTMLKGETEEIGKLVEKTMMRKFGVENVN 254
                     PD D+ K+ + N        QTT+   +T ++   + K   +  G     
Sbjct: 158 ---------SPD-DVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK-- 205
Query: 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314
                 + IC AT  RQ+A+ + + E+ +++LVVG  NSSN++ L E+A+  G  ++ ID
Sbjct: 206 ------DDICYATTNRQEAV-RALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLID 258
Query: 315 SEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
             K I                 +E W+ + +  +G+T+GAS PD ++
Sbjct: 259 DAKDI-----------------QEEWVKEVK-CVGVTAGASAPDILV 287

>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant Length = 328

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 149/347 (42%), Gaps = 78/347 (22%)
Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI 69
Query: 83  PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
                 +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +
Sbjct: 70  ------EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASR 123
Query: 143 GDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEK 202
               SI+ G   H E   T    G+Y    N +   Y+ +                    
Sbjct: 124 RGEESILIGHAGHPEVEGT---MGQY---SNPEGGMYLVE-------------------- 157
Query: 203 FKKAVSKGFDPDVDLVKVGIAN--------QTTMLKGETEEIGKLVEKTMMRKFGVENVN 254
                     PD D+ K+ + N        Q T+   +T ++   + K   +  G     
Sbjct: 158 ---------SPD-DVWKLTVKNEEKLSFMTQCTLSVDDTSDVIDALRKRFPKIVGPRK-- 205
Query: 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314
                 + IC AT  RQ+A+ + + E+ +++LVVG  NSSN++ L E+A+  G  ++ ID
Sbjct: 206 ------DDICYATTNRQEAV-RALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLID 258
Query: 315 SEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
             K I                 +E W+ + +  +G+T+GAS PD ++
Sbjct: 259 DAKDI-----------------QEEWVKEVK-CVGVTAGASAPDILV 287

>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex Length = 326

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 148/345 (42%), Gaps = 78/345 (22%)
Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           +++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I  
Sbjct: 11  MQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI-- 67
Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
               +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +  
Sbjct: 68  ----EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRG 123
Query: 145 YTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204
             SI+ G   H E   T    G+Y    N +   Y+ +                      
Sbjct: 124 EESILIGHAGHPEVEGT---MGQY---SNPEGGMYLVE---------------------- 155
Query: 205 KAVSKGFDPDVDLVKVGIAN--------QTTMLKGETEEIGKLVEKTMMRKFGVENVNEH 256
                   PD D+ K+ + N        QTT+   +T ++   + K   +  G       
Sbjct: 156 -------SPD-DVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK---- 203
Query: 257 FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316
               + IC AT  RQ+A+ + + E+ +++LVVG  NSSN++ L E+A+  G  ++ ID  
Sbjct: 204 ----DDICYATTNRQEAV-RALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDA 258
Query: 317 KRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
           K I                 +E W+ + +  +G+T+GAS PD ++
Sbjct: 259 KDI-----------------QEEWVKEVK-CVGVTAGASAPDILV 285

>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex With Ambpp A Potent Inhibitor Of The Methylerythritol Phosphate Pathway Length = 332

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 148/345 (42%), Gaps = 78/345 (22%)
Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           +++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I  
Sbjct: 17  MQILLANPRGFCAGVDRAISIVENALAIYGA-PIYVRHEVVHNRYVVDSLRERGAIFI-- 73
Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
               +Q   V  G +++  A G +        ++++ + D TCP V+KV   V +  +  
Sbjct: 74  ----EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRG 129
Query: 145 YTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFK 204
             SI+ G   H E   T    G+Y    N +   Y+ +                      
Sbjct: 130 EESILIGHAGHPEVEGT---MGQY---SNPEGGMYLVE---------------------- 161
Query: 205 KAVSKGFDPDVDLVKVGIAN--------QTTMLKGETEEIGKLVEKTMMRKFGVENVNEH 256
                   PD D+ K+ + N        QTT+   +T ++   + K   +  G       
Sbjct: 162 -------SPD-DVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK---- 209
Query: 257 FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316
               + IC AT  RQ+A+ + + E+ +++LVVG  NSSN++ L E+A+  G  ++ ID  
Sbjct: 210 ----DDICYATTNRQEAV-RALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDA 264
Query: 317 KRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
           K I                 +E W+ + +  +G+T+GAS PD ++
Sbjct: 265 KDI-----------------QEEWVKEVK-CVGVTAGASAPDILV 291

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	364
3dnf_A	297	ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha	8e-59
3szu_A	328	ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red	1e-40
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Length = 297

 Score =  191 bits (487), Expect = 8e-59
 Identities = 87/340 (25%), Positives = 158/340 (46%), Gaps = 75/340 (22%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
            + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V      
Sbjct: 3   DIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVF---PS 58

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           +     +   +GD V++ + G   E+   L  K ++++D TCP+V  V  +V +  +  Y
Sbjct: 59  Q----GEEFKEGDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGY 114

Query: 146 TSIIHGKYSHEETVATA----SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLE 201
             ++ G+ +H E + T     +  GK I+V+ +++           E             
Sbjct: 115 FVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIG---------EAL----------- 154

Query: 202 KFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFN 261
                       +    +VGI  QTT  +   +E+   V + +          +     N
Sbjct: 155 ----------KHE----RVGIVAQTTQNEEFFKEV---VGE-IALWV------KEVKVIN 190

Query: 262 TICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321
           TIC+AT  RQ+++ K+  E VD+++++GG NS NT  L  I+++    +Y I++ + +  
Sbjct: 191 TICNATSLRQESVKKLAPE-VDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEEL-- 247

Query: 322 GNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
                          +  W  +G   +GI++GASTPD +I
Sbjct: 248 ---------------QPEWF-RGVKRVGISAGASTPDWII 271

>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Length = 328

 Score =  144 bits (366), Expect = 1e-40
 Identities = 84/350 (24%), Positives = 149/350 (42%), Gaps = 84/350 (24%)

Query: 23  GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82
           G++++ LA   GFC GV+RA+ I   A   +    I++ +E++HN  V   L E     I
Sbjct: 11  GSMQILLANPRGFCAGVDRAISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGA--I 67

Query: 83  PVEEGKKQFDVVNKGDVVVLPAFG--AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKH 140
            +E+       V  G +++  A G   AV       ++++ + D TCP V+KV   V + 
Sbjct: 68  FIEQ----ISEVPDGAILIFSAHGVSQAVRNEA--KSRDLTVFDATCPLVTKVHMEVARA 121

Query: 141 KKGDYTSIIHGKYSHEETVATA----SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTK 196
            +    SI+ G   H +   T     +  G   +V++  +           +L   +  K
Sbjct: 122 SRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDVW---------KLTVKNEEK 172

Query: 197 EAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEH 256
            +F+                        QTT+   +T ++             ++ + + 
Sbjct: 173 LSFM-----------------------TQTTLSVDDTSDV-------------IDALRKR 196

Query: 257 F-----ISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311
           F        + IC AT  RQ+A+  + E+  +++LVVG  NSSN++ L E+A+  G  ++
Sbjct: 197 FPKIVGPRKDDICYATTNRQEAVRALAEQ-AEVVLVVGSKNSSNSNRLAELAQRMGKRAF 255

Query: 312 WIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKVI 361
            ID  K I                 +E W+ K    +G+T+GAS PD ++
Sbjct: 256 LIDDAKDI-----------------QEEWV-KEVKCVGVTAGASAPDILV 287

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 44/355 (12%), Positives = 104/355 (29%), Gaps = 89/355 (25%)

Query: 46  AYEARKQFPEEKIWIT-------NEIIHN---------PTVNKRLEEMAVQNIPVEEGKK 89
           +Y+ + +   +  W+          ++           P    R +  +   + +   + 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 90  QF-----------------DVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSK 132
           +                  +V N        AF  + + ++T   K V   D      + 
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAK---AWNAFNLSCKILLTTRFKQV--TDFLSAATTT 287

Query: 133 VWTSVEKHKKG---DYTSIIHGKYSH-------EETVATASFAGKYIIVKNMKEAEYVCD 182
              S++ H      D    +  KY          E + T       II +++++     D
Sbjct: 288 H-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWD 345

Query: 183 YILGGELNGSSSTKEAFLEKFKKAVSKG-------FDPDVDLVKVGIANQT-TML--KGE 232
                  +  ++  E+ L   + A  +        F P        I     +++     
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVI 400

Query: 233 TEEIGKLVEKTMMRKFGVE-NVNEHFISFNTI-CDATQERQD--AMYKMVEEKVDLILVV 288
             ++  +V K + +   VE    E  IS  +I  +   + ++  A+++ + +  ++    
Sbjct: 401 KSDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 289 GGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK 343
                     L     D     Y+          + I + L + E  E+      
Sbjct: 460 DSD------DLIPPYLD----QYFY---------SHIGHHLKNIEHPERMTLFRM 495

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
3dnf_A	297	ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha	100.0
3szu_A	328	ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red	100.0
3szu_A	328	ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red	94.43
3dnf_A	297	ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha	94.39
2xdq_A	460	Light-independent protochlorophyllide reductase S;	82.64

>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}

Probab=100.00  E-value=6e-101  Score=741.80  Aligned_cols=270  Identities=31%  Similarity=0.543  Sum_probs=254.1

Q ss_pred             ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEc
Q 017886           24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP  103 (364)
Q Consensus        24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VIIr  103 (364)
                      .|+|+||+++||||||+|||++|+++++++ +++||++|||||||+|+++|+++|+.++++       +++|+|++||||
T Consensus         1 ~m~I~lA~~~GFC~GV~RAI~~a~~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIir   72 (297)
T 3dnf_A            1 MVDIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIR   72 (297)
T ss_dssp             CCEEEECTTCSSCHHHHHHHHHHHHHTTTC-CSCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEEC
T ss_pred             CeEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEE
Confidence            399999999999999999999999999876 478999999999999999999999999973       678889999999


Q ss_pred             CCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC---C-cEEEEcChhhHHH
Q 017886          104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA---G-KYIIVKNMKEAEY  179 (364)
Q Consensus       104 AHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~---~-~~~vv~~~~e~~~  179 (364)
                      |||+||+++++|++||++|||||||||+|+|++|++++++||+|||+|+++||||+|++||+   + .++||++++|++.
T Consensus        73 AHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~  152 (297)
T 3dnf_A           73 SHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGE  152 (297)
T ss_dssp             TTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGG
T ss_pred             CCCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999   4 6899999999876


Q ss_pred             hhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc
Q 017886          180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS  259 (364)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~v  259 (364)
                      +.                                  .++|+++++||||+.++|.+|++.|+++    |      +++.+
T Consensus       153 l~----------------------------------~~~kv~~vsQTT~s~~~~~~iv~~L~~r----~------p~~~~  188 (297)
T 3dnf_A          153 AL----------------------------------KHERVGIVAQTTQNEEFFKEVVGEIALW----V------KEVKV  188 (297)
T ss_dssp             GG----------------------------------GCSEEEEEECTTCCHHHHHHHHHHHHHH----S------SEEEE
T ss_pred             cC----------------------------------CCCcEEEEEecCCcHHHHHHHHHHHHHh----C------CCCCC
Confidence            51                                  1259999999999999999999999874    2      34778


Q ss_pred             cccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhhcc
Q 017886          260 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKEN  339 (364)
Q Consensus       260 ~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~  339 (364)
                      +||||+||++||+|+++|| +++|+||||||+|||||+||+|||++.|+|+||||+++||++                 +
T Consensus       189 ~~tIC~AT~~RQ~av~~la-~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~-----------------~  250 (297)
T 3dnf_A          189 INTICNATSLRQESVKKLA-PEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP-----------------E  250 (297)
T ss_dssp             ECCCCSHHHHHHHHHHHHG-GGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG-----------------G
T ss_pred             CCCccHHHHHHHHHHHHHH-hhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH-----------------H
Confidence            9999999999999999999 689999999999999999999999999999999999999999                 9


Q ss_pred             cCCCCCCEEEEEeCCCCCHHHHhcC
Q 017886          340 WLPKGQITIGITSGASTPDKVISSA  364 (364)
Q Consensus       340 wl~~~~~~VGITAGASTP~~lI~e~  364 (364)
                      || .++.+||||||||||+|||++|
T Consensus       251 wl-~~~~~VGITAGASTP~~li~eV  274 (297)
T 3dnf_A          251 WF-RGVKRVGISAGASTPDWIIEQV  274 (297)
T ss_dssp             GG-TTCSEEEEEECTTCCHHHHHHH
T ss_pred             Hh-CCCCEEEEeecCCCCHHHHHHH
Confidence            99 6999999999999999999985

>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*

Probab=100.00  E-value=2e-100  Score=746.23  Aligned_cols=277  Identities=28%  Similarity=0.449  Sum_probs=255.5

Q ss_pred             ccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEE
Q 017886           22 WGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV  101 (364)
Q Consensus        22 ~~~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~l~~g~~VI  101 (364)
                      -|.|.|++|+++||||||+|||++|++++++++ ++||++|||||||+|+++|+++|+.+++      +++++|+|++||
T Consensus        10 ~~~~~i~lA~~~GFC~GV~RAI~~ae~al~~~~-~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve------~l~ev~~g~~VI   82 (328)
T 3szu_A           10 HGSMQILLANPRGFCAGVDRAISIVENALAIYG-APIYVRHEVVHNRYVVDSLRERGAIFIE------QISEVPDGAILI   82 (328)
T ss_dssp             ---CEEEECSSCSCCHHHHHHHHHHHHHHHHHC-SCEEEESCSSSCHHHHHHHHHTTEEEES------SGGGSCTTCEEE
T ss_pred             CCceEEEEeCCCCcCccHHHHHHHHHHHHHhcC-CCEEEeCCCccCHHHHHHHHHCCCEEec------chhhCCCCCEEE
Confidence            478999999999999999999999999998763 5899999999999999999999999997      478999999999


Q ss_pred             EcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC--C--cEEEEcChhhH
Q 017886          102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--G--KYIIVKNMKEA  177 (364)
Q Consensus       102 IrAHGv~~~v~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~--~--~~~vv~~~~e~  177 (364)
                      |||||+||+++++|++||++|||||||||+|+|++|++++++||+|||||+++||||+|++||+  +  .++||++++|+
T Consensus        83 irAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~edv  162 (328)
T 3szu_A           83 FSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDV  162 (328)
T ss_dssp             ECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHHH
T ss_pred             EECCCCCHHHHHHHHHCCCEEEECCCcchHHHHHHHHHHHhCCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999  3  58999999999


Q ss_pred             HHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccc
Q 017886          178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHF  257 (364)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  257 (364)
                      +.+.                               + .+++|+++++||||+.++|.+|+++|+++|+...        +
T Consensus       163 ~~l~-------------------------------~-~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~--------~  202 (328)
T 3szu_A          163 WKLT-------------------------------V-KNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIV--------G  202 (328)
T ss_dssp             HHCC-------------------------------C-SCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCB--------C
T ss_pred             HhCC-------------------------------c-CCCCeEEEEEecCCcHHHHHHHHHHHHHhCcccc--------c
Confidence            7751                               1 1236899999999999999999999998655442        2


Q ss_pred             cccccccHHHHHHHHHHHHhhhhCCCEEEEEcCCCCchhHHHHHHHHhhCCCeEEeCCCCccCCCCcchhhhccchhhhh
Q 017886          258 ISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEK  337 (364)
Q Consensus       258 ~v~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGGknSSNT~rL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~  337 (364)
                      ..+||||+||++||+|+++|| +++|+||||||+|||||+||+|||++.|+++||||+++||++                
T Consensus       203 ~~~ntIC~AT~~RQ~av~~lA-~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~~----------------  265 (328)
T 3szu_A          203 PRKDDICYATTNRQEAVRALA-EQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQE----------------  265 (328)
T ss_dssp             CSSCSCCHHHHHHHHHHHHHH-HHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCCH----------------
T ss_pred             CCCCCcCHHHHHHHHHHHHHH-HhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCCH----------------
Confidence            348999999999999999999 689999999999999999999999999999999999999999                


Q ss_pred             cccCCCCCCEEEEEeCCCCCHHHHhcC
Q 017886          338 ENWLPKGQITIGITSGASTPDKVISSA  364 (364)
Q Consensus       338 ~~wl~~~~~~VGITAGASTP~~lI~e~  364 (364)
                       +|| .++.+||||||||||+|||++|
T Consensus       266 -~wl-~g~~~VGITAGASTP~~lieeV  290 (328)
T 3szu_A          266 -EWV-KEVKCVGVTAGASAPDILVQNV  290 (328)
T ss_dssp             -HHH-TTCSEEEEEECTTCCHHHHHHH
T ss_pred             -HHh-CCCCEEEEeecCCCCHHHHHHH
Confidence             999 7999999999999999999985

>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*

Probab=94.43  E-value=0.53  Score=45.99  Aligned_cols=172  Identities=13%  Similarity=0.178  Sum_probs=125.7

Q ss_pred             cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCCEEEEcCCCCCHH
Q 017886           36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE  110 (364)
Q Consensus        36 C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~~l~~g~~VIIrAHGv~~~  110 (364)
                      |.=|.++=+.+.+..++  +..|...|.==| |+|..-+-.-     ++.+|++.++.+.|+.-.+....++.=-=.+.+
T Consensus       108 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~G~~~~~~g~~~vV~~~edv~~l~~~~~~kv~~vsQTT~s~~  184 (328)
T 3szu_A          108 CPLVTKVHMEVARASRR--GEESILIGHAGH-PQVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVD  184 (328)
T ss_dssp             CHHHHHHHHHHHHHHHH--TCEEEEESCTTC-HHHHHHHTTCCCTTSCEEEECSHHHHHHCCCSCTTSEEEEECTTSCHH
T ss_pred             CcchHHHHHHHHHHHhC--CCEEEEEccCCC-ceEEeecccccCCCCcEEEECCHHHHHhCCcCCCCeEEEEEecCCcHH
Confidence            66677777777777766  457999999888 8888877544     477777654332232111134556666555554


Q ss_pred             ----HHHHHHhcCCcE----EeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHH
Q 017886          111 ----EMVTLNNKNVQI----VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE  178 (364)
Q Consensus       111 ----v~~~l~~~g~~i----iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~  178 (364)
                          +.+.|+++.-.+    .|+-|.-...=|..+++++++-.-+|++|.++-.-+.=+...|    ..++.|++.+|++
T Consensus       185 ~~~~iv~~L~~r~p~i~~~~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~  264 (328)
T 3szu_A          185 DTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ  264 (328)
T ss_dssp             HHHHHHHHHHHHCTTCBCCSSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCC
T ss_pred             HHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCC
Confidence                566778877655    4999999999999999999999999999999877776555433    3579999999875


Q ss_pred             HhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886          179 YVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK  242 (364)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~  242 (364)
                      .                  ++   |+           ..++||+.+=+.-+....++++++|+.
T Consensus       265 ~------------------~w---l~-----------g~~~VGITAGASTP~~lieeVi~~l~~  296 (328)
T 3szu_A          265 E------------------EW---VK-----------EVKCVGVTAGASAPDILVQNVVARLQQ  296 (328)
T ss_dssp             H------------------HH---HT-----------TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             H------------------HH---hC-----------CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence            3                  11   11           125899999999999999999999976

>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}

Probab=94.39  E-value=0.96  Score=43.60  Aligned_cols=169  Identities=16%  Similarity=0.106  Sum_probs=125.9

Q ss_pred             cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCC-EEEEcCCCCCH
Q 017886           36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGD-VVVLPAFGAAV  109 (364)
Q Consensus        36 C~GV~RAi~~a~~~~~~~~~~~vy~lG~iIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~~l~~g~-~VIIrAHGv~~  109 (364)
                      |.=|.+.=+.+.+..++  +..|...|.==| |+|..-+-.-     ++.+|++.++   ++.++..+ ..++.=--.+.
T Consensus        96 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~g~~~~~~~~~~vV~~~ed---~~~l~~~~kv~~vsQTT~s~  169 (297)
T 3dnf_A           96 CPYVKAVHEAVCQLTRE--GYFVVLVGEKNH-PEVIGTLGYLRACNGKGIVVETLED---IGEALKHERVGIVAQTTQNE  169 (297)
T ss_dssp             CHHHHHHHHHHHHHHHT--TCEEEEESCTTC-HHHHHHHHHHHHTTCCEEEESSGGG---GGGGGGCSEEEEEECTTCCH
T ss_pred             CcchHHHHHHHHHHHhC--CCEEEEEecCCC-ceEEeeccccccCCCcEEEEcCHHH---HHhcCCCCcEEEEEecCCcH
Confidence            67777777777777765  457999999888 8888776443     5777876543   34444333 44566555555


Q ss_pred             H----HHHHHHhcC--CcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHH
Q 017886          110 E----EMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY  179 (364)
Q Consensus       110 ~----v~~~l~~~g--~~iiDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~  179 (364)
                      +    +.+.|++|.  +.+.|+-|.-...=|..+++++++-.-+|++|.++-.-+.=+...|    ..++.|++.+|++.
T Consensus       170 ~~~~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~  249 (297)
T 3dnf_A          170 EFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP  249 (297)
T ss_dssp             HHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH
Confidence            4    456677764  5578999999999999999999999999999999887766665443    35899999998753


Q ss_pred             hhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 017886          180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK  242 (364)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~  242 (364)
                                               +|+    +   ..++||+.+=+.-+....++++++|+.
T Consensus       250 -------------------------~wl----~---~~~~VGITAGASTP~~li~eVi~~l~~  280 (297)
T 3dnf_A          250 -------------------------EWF----R---GVKRVGISAGASTPDWIIEQVKSRIQE  280 (297)
T ss_dssp             -------------------------GGG----T---TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             -------------------------HHh----C---CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence                                     111    1   125899999999999999999999875

>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}

Probab=82.64  E-value=20  Score=35.43  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             ceEEEEeCCCCCcccHHHHHHHHHHHHhhC-------------------------------------CCCceEEeccccc
Q 017886           24 NVKVKLAESYGFCWGVERAVQIAYEARKQF-------------------------------------PEEKIWITNEIIH   66 (364)
Q Consensus        24 ~mkI~lA~~~GFC~GV~RAi~~a~~~~~~~-------------------------------------~~~~vy~lG~iIH   66 (364)
                      +..|+.+...||..+...+.+.|.+++-++                                     ..+.|-.+|.+  
T Consensus       128 ~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnilG~~--  205 (460)
T 2xdq_A          128 GIPIVVARANGLDYAFTQGEDTVLAAMAARCPTSTAISDPEERNPIQRLLNFGKKKEEVQAQSSQYHPHPPLVLFGSL--  205 (460)
T ss_dssp             SSCEEEEECCTTTCCTTHHHHHHHHHHHTTCCCCC-----------------------------CCCSCCCEEEESCC--
T ss_pred             CCcEEEEecCCccccHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccCCCCcEEEEEec--
Confidence            357888899999866666666655544221                                     12368899987  


Q ss_pred             CHHH----HHHHHHcCcEEecC--CccccccccccCCCEEEEcCCCCCHHHHHHH-HhcCCcEEeccCchh
Q 017886           67 NPTV----NKRLEEMAVQNIPV--EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL-NNKNVQIVDTTCPWV  130 (364)
Q Consensus        67 N~~V----v~~L~~~Gv~~v~~--~~~~~~~~~l~~g~~VIIrAHGv~~~v~~~l-~~~g~~iiDaTCP~V  130 (364)
                      |+..    ..-|++.|+.++.-  ....+++..++.....+.-.+-.. ..-+.| ++.|+..+....|+-
T Consensus       206 ~~~~~~ei~~lL~~~Gi~v~~~~~~~~~~el~~~~~A~~ni~~~~~~~-~~A~~Le~~~giP~~~~~~P~G  275 (460)
T 2xdq_A          206 PDPVVTQLTLELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFLS-RTATTLIRRRKCQLITAPFPIG  275 (460)
T ss_dssp             CHHHHHHHHHHHGGGTCCEEEEESCSSGGGCCCCCTTCEEEESSTTCH-HHHHHHHHTTCCEEECCCCSBH
T ss_pred             CccHHHHHHHHHHHcCCeEEEEeCCCCHHHHHccccCcEEEEcCHhHH-HHHHHHHHHcCCCceecCcCcc
Confidence            7763    55678999987641  122234444444444444333333 445555 667899999988985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00