Citrus Sinensis ID: 017895

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MKRSTMDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDITMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGVMLNFGAELRVKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNYFSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNFQFDDLDCF
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccEEEcccccccccccccHHHcccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccHHHccccccccccccccEEEEccccccccccEEEEEEccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkrstmdrdqNILITELAQGKELAKRLRnhlnpssspetREFLVQEILSSYEKALSMLNYshslqsnklditmvesprsfpntatsprsdasdqdyCKDVVSKkrktmpqwtEQVKVTsgtalegtlddgycwrkygqkdilgrnfprgyyrcthrhargclatkqvqrsdddpsmfevtyrgrhkcsqnshlalastsstkqvsidqknpccnqqkeseekpkeangvmlnfgaelrvksedldaaesifspfsfphesigqeninvednlfldgmidnnfmggfsptfispatsesnyfsmspchmtnfglgydvqtpesdlkaeiistptsvinspfgdfdfsltkedldpnfqfddldcf
Flexible Loop (DISEMBL)
mkrstmdrdqniLITELAQGKELAKRLRNhlnpssspetrEFLVQEILSSYEKALSMLNYSHSLQSNKLDITMVESPRSFPntatsprsdasdqdYCKDVVSkkrktmpqwteqvkvtsgtalegtlddgycWRKYGQKDILGRNFPRGYYRCTHRHARgclatkqvqrsdddPSMFEVTYRgrhkcsqnshlalastsstkqvsidqKNPCCNQqkeseekpkeangVMLNFGAELRVKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNYFSMSPCHMTNFGLGYDVQTPESDLKAEIIStptsvinspFGDFDFSLTKEDLDPNFQFDDLDCF
Low Complexity Region (SEG)
MKRSTMDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDITMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGVMLNFGAELRVKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNYFSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNFQFDDLDCF
Disordered region (IsUnstruct)
*****************************************FLVQEILSSYEKALSMLNY**************************************************WTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATK*****************************************************************LNFGAEL***********SIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNYFSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLT****************
Disordered Region (DISOPRED)
*************ITELAQGKELAK********************EILSSYEK**********************************************************************EGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCS**********************************************************************************************************************************************TPTSVINSPFGDFDFSLTKEDLDPNFQFD*LDCF
Disordered Region (DISEMBL)
********DQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDITMVESP*******************CKDVVSKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLAT*********PSMFEVTYRGRHKCSQNSHLAL******************************ANGVMLNFGAELRVKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNYFSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNFQFDDLDCF
Disordered Region (DISPRO)
*****MDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSML*****************************************************TEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHK***************************************************************************************************************SNYFSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNFQFDDLDCF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRSTMDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDITMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGVMLNFGAELRVKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNYFSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNFQFDDLDCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
Q9SKD9	295	Probable WRKY transcripti	yes	no	0.747	0.922	0.340	5e-40
Q9SUP6	324	Probable WRKY transcripti	no	no	0.719	0.808	0.361	1e-39
Q9FL62	303	Probable WRKY transcripti	no	no	0.445	0.534	0.445	5e-39
Q8H0Y8	313	Probable WRKY transcripti	no	no	0.708	0.824	0.364	1e-38
Q9LY00	294	Probable WRKY transcripti	no	no	0.571	0.707	0.310	1e-20
Q9SHB5	292	WRKY transcription factor	no	no	0.214	0.267	0.556	2e-19
Q93WU8	346	Probable WRKY transcripti	no	no	0.456	0.479	0.306	1e-18
Q9FH83	1288	Probable WRKY transcripti	no	no	0.225	0.063	0.522	2e-16
O04609	298	WRKY transcription factor	no	no	0.381	0.466	0.393	1e-15
Q9ZUU0	429	WRKY transcription factor	no	no	0.252	0.214	0.45	1e-15

>sp|Q9SKD9|WRK46_ARATH Probable WRKY transcription factor 46 OS=Arabidopsis thaliana GN=WRKY46 PE=2 SV=1

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 176/349 (50%), Gaps = 77/349 (22%)

Query: 6   MDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSH--S 63
           M  ++ ++I EL  GKELA RL N+L  +SS ++ + L+ +IL  Y+ A+ ML+++   +
Sbjct: 1   MMMEEKLVINELELGKELANRLMNNLKHTSSVDSNKTLISDILRIYQNAIFMLSFNQDKN 60

Query: 64  LQSNKLDITMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTAL 123
           +    L+I   +S   F                      KKRK   + TE+VKV   T  
Sbjct: 61  ILKRSLEIDGKDSKNVF----------------------KKRKVSEKNTEKVKVFVATEQ 98

Query: 124 E-GTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYR 182
           E G++DDG+CWRKYGQK+I G   PR YYRCTHR  + CLA KQVQ+SD DPS+FEV Y 
Sbjct: 99  ENGSIDDGHCWRKYGQKEIHGSKNPRAYYRCTHRFTQDCLAVKQVQKSDTDPSLFEVKYL 158

Query: 183 GRHKCSQNSHLALASTSSTKQVSIDQKNPC----CNQQKESEE-KPKEANGVMLNFGAEL 237
           G H C   +++    T++   VS+   N       +  ++SE+ KP ++  VM++     
Sbjct: 159 GNHTC---NNITSPKTTTNFSVSLTNTNIFEGNRVHVTEQSEDMKPTKSEEVMISL---- 211

Query: 238 RVKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSE 297
               EDL+  ++IF  FSF +  I  EN   + NLFL   +++          +SPATS 
Sbjct: 212 ----EDLENKKNIFRTFSFSNHEI--ENGVWKSNLFLGNFVED----------LSPATS- 254

Query: 298 SNYFSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFS 346
                                   S + +E++S P +V NS   D  FS
Sbjct: 255 -----------------------GSAITSEVLSAPAAVENSETADSYFS 280

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUP6|WRK53_ARATH Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 170/307 (55%), Gaps = 45/307 (14%)

Query: 3   RSTMDRDQNILITELAQGKELAKRLRNHLN------------PSSSPETREFLVQEILSS 50
           R  +  +Q  L++EL  G + AK+L+  L              ++  ET E LV++I+SS
Sbjct: 4   RDMLSWEQKTLLSELINGFDAAKKLQARLREAPSPSSSFSSPATAVAETNEILVKQIVSS 63

Query: 51  YEKALSMLNYSHS----LQSNKLDITMVESPRSFPNTATS----PRSD-------ASDQD 95
           YE++L +LN+S S    L    + +  V +P S P +  S    PRS+       +S+  
Sbjct: 64  YERSLLLLNWSSSPSVQLIPTPVTVVPVANPGSVPESPASINGSPRSEEFADGGGSSESH 123

Query: 96  YCKDVV--SKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRC 153
           + +D +  SKKRK +P+W+E+V+++    LEG  DD + WRKYGQKDILG  FPR YYRC
Sbjct: 124 HRQDYIFNSKKRKMLPKWSEKVRISPERGLEGPQDDVFSWRKYGQKDILGAKFPRSYYRC 183

Query: 154 THRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCC 213
           THR  + C ATKQVQRSD D ++FEVTYRG H CSQ       + + T  ++  +K    
Sbjct: 184 THRSTQNCWATKQVQRSDGDATVFEVTYRGTHTCSQ-------AITRTPPLASPEKRQDT 236

Query: 214 NQQKESEEKPKEANGVMLNFGAELRVKSEDLDAAESIFS-----PFSFPHESIGQENINV 268
             +    +KPK+   ++ +  + L V+++ LD  + +FS     PF + + +I  E  +V
Sbjct: 237 RVKPAITQKPKD---ILESLKSNLTVRTDGLDDGKDVFSFPDTPPF-YNYGTINGEFGHV 292

Query: 269 EDNLFLD 275
           E +   D
Sbjct: 293 ESSPIFD 299

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May regulate the early events of leaf senescence. Negatively regulates the expression of ESR/ESP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL62|WRK30_ARATH Probable WRKY transcription factor 30 OS=Arabidopsis thaliana GN=WRKY30 PE=2 SV=1

 Score =  162 bits (409), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 116/182 (63%), Gaps = 20/182 (10%)

Query: 14  ITELA-QGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDIT 72
           I EL  +G++ A +       +SS ETRE L ++IL SY K+L+++NYS  L        
Sbjct: 17  INELMIEGRDYAHQF----GSASSQETREHLAKKILQSYHKSLTIMNYSGELDQ------ 66

Query: 73  MVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGTLDDGYC 132
                        SP+SD SDQ+    V+   +K+MP+W+ +V++  G  ++ TLDDG+ 
Sbjct: 67  -------VSQGGGSPKSDDSDQEPL--VIKSSKKSMPRWSSKVRIAPGAGVDRTLDDGFS 117

Query: 133 WRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQNSH 192
           WRKYGQKDILG  FPRGYYRCT+R ++GC ATKQVQRSD++  + E++YRG H CSQ ++
Sbjct: 118 WRKYGQKDILGAKFPRGYYRCTYRKSQGCEATKQVQRSDENQMLLEISYRGIHSCSQAAN 177

Query: 193 LA 194
           + 
Sbjct: 178 VG 179

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H0Y8|WRK41_ARATH Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 157/313 (50%), Gaps = 55/313 (17%)

Query: 6   MDRDQNILITELAQGKELAKRLRNHLNPSS-------SPETREFLVQEILSSYEKALSML 58
           M+ ++  L+ EL  G + AK+L+   +PS        + E +E L+  I+SS++KA+ ML
Sbjct: 4   MNWERRSLLNELIHGLKAAKQLQGSSSPSLSASSSYLTTEIKENLLHNIVSSFKKAILML 63

Query: 59  NYSHSLQSNKLDITM--VESPRSFPNTATS----PRSDASDQDYCKD--VVSKKRKTMPQ 110
           N S +  +  +++    +  P   P +  S    PRS+       K+  + SKKRK +P+
Sbjct: 64  NGSTTQHNPTIELAPDPLAHPGKVPGSPASITGNPRSEEFFNVRSKEFNLSSKKRKMLPK 123

Query: 111 WTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRS 170
           WTEQV+++    LEG  DD + WRKYGQKDILG  FPR YYRCT R+ + C ATKQVQRS
Sbjct: 124 WTEQVRISPERGLEGPHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWATKQVQRS 183

Query: 171 DDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGV- 229
           D DP++FEVTYRG H CSQ   L                       ++ E KPK    V 
Sbjct: 184 DGDPTIFEVTYRGTHTCSQGIPLP----------------------EKRETKPKHTVAVN 221

Query: 230 MLNFGAELRVKSEDLDAAESIFSPFSFPHES--IGQENINVEDNLF----------LDGM 277
             N  A L V++  L +       FSFP  S     E+IN     +            G+
Sbjct: 222 YQNLRASLTVRTGGLGSEA-----FSFPVTSPLYTYESINGGGTFYHHVGSSGPSDFTGL 276

Query: 278 IDNNFMGGFSPTF 290
           I  N   G SP F
Sbjct: 277 ISTNTSTGSSPIF 289

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY00|WRK70_ARATH Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 14/222 (6%)

Query: 13  LITELAQGKELAKRLRNHLN-PSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDI 71
           ++ +L +G +L  +L+  L+ P S  E    LV +IL  +   +S+L+    + S+   +
Sbjct: 11  VMNQLVEGHDLTTQLQQLLSQPGSGLED---LVAKILVCFNNTISVLDTFEPISSSS-SL 66

Query: 72  TMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGT-LDDG 130
             VE  ++          D+ D       V  KR       ++ K +    +E T L+D 
Sbjct: 67  AAVEGSQNASCDNDGKFEDSGDSRKRLGPVKGKRGCY----KRKKRSETCTIESTILEDA 122

Query: 131 YCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQN 190
           + WRKYGQK+IL   FPR Y+RCTH++ +GC ATKQVQ+ + +P MF +TY G H C+ N
Sbjct: 123 FSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSITYIGNHTCNTN 182

Query: 191 SHLALASTSSTKQV----SIDQKNPCCNQQKESEEKPKEANG 228
           +    + T          S D K+P  +   + E+ P   +G
Sbjct: 183 AETPKSKTCDHHDEIFMDSEDHKSPSLSTSMKEEDNPHRHHG 224

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHB5|WRK55_ARATH WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 128 DDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKC 187
           DD + WRKYGQK+ILG  FPR YYRCTH+    C A KQVQR +DDP  F VTYRG H C
Sbjct: 173 DDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSHTC 232

Query: 188 SQNSHLALASTSSTKQVSI 206
             NS    AS+++   + I
Sbjct: 233 -YNSTAPTASSATPSTIPI 250

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU8|WRK54_ARATH Probable WRKY transcription factor 54 OS=Arabidopsis thaliana GN=WRKY54 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 98/212 (46%), Gaps = 46/212 (21%)

Query: 13  LITELAQGKELAKRLR-----NHLNPSSSPETR---------------EFLVQEILSSYE 52
           ++ +L +G E A +L+      H N     ETR               + L+ +IL S+ 
Sbjct: 15  VVDQLVEGYEFATQLQLLLSHQHSNQYHIDETRLVSGSGSVSGGPDPVDELMSKILGSFH 74

Query: 53  KALSMLNYSHSLQSNKLDITMVESPRSFP---------NTATSPRSDASDQDYCKDVVSK 103
           K +S+L+          D   V  P +           ++AT    +  D    K    K
Sbjct: 75  KTISVLD--------SFDPVAVSVPIAVEGSWNASCGDDSATPVSCNGGDSGESK----K 122

Query: 104 KRKTMPQ-----WTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHA 158
           KR  + +     +T + +  +      + +D Y WRKYGQK+IL   FPR Y+RCTH+  
Sbjct: 123 KRLGVGKGKRGCYTRKTRSHTRIVEAKSSEDRYAWRKYGQKEILNTTFPRSYFRCTHKPT 182

Query: 159 RGCLATKQVQRSDDDPSMFEVTYRGRHKCSQN 190
           +GC ATKQVQ+ D D  MF++TY G H C+ N
Sbjct: 183 QGCKATKQVQKQDQDSEMFQITYIGYHTCTAN 214

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 55/88 (62%), Gaps = 6/88 (6%)

Query: 99   DVVSKKRKTMPQWTEQVKVTSGTAL-EGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRH 157
            DV  KK+K      +  KV S  A+ EG   D + WRKYGQKDILG  FPRGYYRC ++ 
Sbjct: 1183 DVPKKKKKHSESRVK--KVVSIPAIDEG---DLWTWRKYGQKDILGSRFPRGYYRCAYKF 1237

Query: 158  ARGCLATKQVQRSDDDPSMFEVTYRGRH 185
              GC ATKQVQRS+ D +M  +TY   H
Sbjct: 1238 THGCKATKQVQRSETDSNMLAITYLSEH 1265

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|O04609|WRK22_ARATH WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 76/155 (49%), Gaps = 16/155 (10%)

Query: 102 SKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGC 161
           SK+RK       Q K     A E    D + WRKYGQK I G  +PRGYYRC+   ++GC
Sbjct: 108 SKRRKI------QHKKVCHVAAEALNSDVWAWRKYGQKPIKGSPYPRGYYRCS--TSKGC 159

Query: 162 LATKQVQRSDDDPSMFEVTYRGRHKCSQNSHL-ALASTSSTKQVSIDQ---KNPCCNQQK 217
           LA KQV+R+  DP MF VTY   H     +H  +LA   ST+Q   DQ   K+P      
Sbjct: 160 LARKQVERNRSDPKMFIVTYTAEHNHPAPTHRNSLA--GSTRQKPSDQQTSKSPTTTIAT 217

Query: 218 ESEEKPKEANGVMLNFGAELRVKSEDLDAAESIFS 252
            S      A+  +L     L V   DLD  E + S
Sbjct: 218 YSSSPVTSADEFVLPVEDHLAVG--DLDGEEDLLS 250

Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU0|WRK44_ARATH WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 8/100 (8%)

Query: 102 SKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGC 161
           SK+RK   Q +E   V+ G+    +L+DG+ WRKYGQK + G  +PR YYRCT   +  C
Sbjct: 324 SKRRKNEKQSSE-AGVSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRCT---SANC 379

Query: 162 LATKQVQRSDDDPSMFEVTYRGRHKCSQNSHLALASTSST 201
            A K V+R+ DDP  F  TY G+H    N HL L+  SS+
Sbjct: 380 RARKHVERASDDPRAFITTYEGKH----NHHLLLSPPSSS 415

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
409923413	352	WRKY transcription factor 6-1 [Dimocarpu	0.953	0.985	0.603	1e-113
224130498	365	predicted protein [Populus trichocarpa]	0.956	0.953	0.597	1e-111
259121377	369	WRKY transcription factor 6 [(Populus to	0.956	0.943	0.591	1e-111
40846374	349	putative WRKY transcription factor 30 [V	0.914	0.954	0.560	1e-103
225454483	349	PREDICTED: probable WRKY transcription f	0.914	0.954	0.560	1e-102
224067962	363	predicted protein [Populus trichocarpa]	0.967	0.969	0.569	1e-102
297745413	360	unnamed protein product [Vitis vinifera]	0.807	0.816	0.562	1e-97
302399119	353	WRKY domain class transcription factor [	0.934	0.963	0.519	7e-90
255541688	333	WRKY transcription factor, putative [Ric	0.892	0.975	0.537	3e-89
356573221	362	PREDICTED: probable WRKY transcription f	0.964	0.969	0.509	3e-86

>gi|409923413|gb|AEO31476.2| WRKY transcription factor 6-1 [Dimocarpus longan]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/363 (60%), Positives = 266/363 (73%), Gaps = 16/363 (4%)

Query: 6   MDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQ 65
           MDR+  +L  EL QGKELAK+LRNHLNPSSS +TR++L+Q+IL SYEKALS+LN   S+ 
Sbjct: 1   MDRELMVLEKELTQGKELAKQLRNHLNPSSSNQTRDYLIQKILGSYEKALSVLNCGASVV 60

Query: 66  SNKLDITMVESPRSFPNTATSPRSDASD---QDYCKDVVSKKRKTMPQWTEQVKVTSGTA 122
             K++I+M+E+P SF N   SPR +AS+   +D C   V KKRKTMP+WTEQVK  +GT 
Sbjct: 61  EPKINISMLETPSSFANI--SPRCEASNLDCEDQCHRDVFKKRKTMPRWTEQVKACAGTG 118

Query: 123 LEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYR 182
           LEG  DDGYCWRKYGQKDILG NFPRGYYRCTHRHA+GCLATKQVQRSD DPS+ EVTYR
Sbjct: 119 LEGHPDDGYCWRKYGQKDILGANFPRGYYRCTHRHAQGCLATKQVQRSDGDPSIVEVTYR 178

Query: 183 GRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGVMLNFGAELRVKSE 242
           GRH C+QNS+ A  ++ S  +V   +KN    +Q E ++ PK+   VM  FGA  +VK+E
Sbjct: 179 GRHTCNQNSNPATVASPSVSKV---EKNHYLRKQ-EHDQNPKQEE-VMFKFGAGCKVKTE 233

Query: 243 DLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNYFS 302
            LD +E+IF  F FP  SI  E   V +N+F + M++NN MG FS  FISP TSESNYF 
Sbjct: 234 GLDNSENIFPSFPFPPTSIEAE--YVAENIFQEAMLENNIMGSFSQAFISPTTSESNYFP 291

Query: 303 MSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGD-FDFSLTKEDLDPNFQFDDL 361
           +SP HM NFGLG+ VQT +SDL  EIIS PTSV NSP G+ FDF   K D DPNF FD+L
Sbjct: 292 VSPSHMNNFGLGHGVQTSDSDL-TEIISAPTSVTNSPIGEAFDF--IKVDFDPNFPFDNL 348

Query: 362 DCF 364
           + F
Sbjct: 349 EFF 351

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130498|ref|XP_002320852.1| predicted protein [Populus trichocarpa] gi|222861625|gb|EEE99167.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/373 (59%), Positives = 265/373 (71%), Gaps = 25/373 (6%)

Query: 5   TMDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNY-SHS 63
           +M+ +   LI+EL QGKELAK+L NHLNPSSS E R+FLV +ILSSYEKALSMLN+ + +
Sbjct: 4   SMEWEHKTLISELTQGKELAKQLSNHLNPSSSLEARQFLVDKILSSYEKALSMLNWGALA 63

Query: 64  LQSNKLDITMVESPRSFPNTATSPRSDASDQD---YCKDVVSKKRKTMPQWTEQVKVTSG 120
               K  I  VE   SF N+  SPRS+ SDQD    C   V KKRK  P+WTEQVK  SG
Sbjct: 64  ADQPKPTIGTVEPLHSFANS--SPRSEVSDQDCKEECNKDVYKKRKIQPRWTEQVKDCSG 121

Query: 121 TALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVT 180
           T LEG LDDGY WRKYGQKDILG NFPRGYYRCTHRH++GCLATKQVQRSD+D S+FEVT
Sbjct: 122 TGLEGPLDDGYSWRKYGQKDILGANFPRGYYRCTHRHSQGCLATKQVQRSDEDHSIFEVT 181

Query: 181 YRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQK-------ESEEKPKEANGVMLNF 233
           YRGRH C+Q S   +AS S         KN C  Q K       + +EKPK    + +NF
Sbjct: 182 YRGRHTCNQASPSPVASPSP--------KNDCSKQSKYHRKQQQQRQEKPKPTEEIFVNF 233

Query: 234 GAEL-RVKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFIS 292
           G+++ +VK+EDL + + IF  FSFP  S G E  N E+N+F + M++NNF+G FSPTFIS
Sbjct: 234 GSDIVQVKNEDLGSKDDIFPSFSFPCTSFGNE--NEENNIFTESMMENNFLGSFSPTFIS 291

Query: 293 PATSESNYFSMSPCHMTNFGLGY-DVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKED 351
           PATSESNYFSMSPCHM +FG+GY +VQTPES+L  EIIS PTSV NSP GDFD S+   D
Sbjct: 292 PATSESNYFSMSPCHMNSFGIGYQNVQTPESELTTEIISAPTSVTNSPIGDFDISIDNVD 351

Query: 352 LDPNFQFDDLDCF 364
            D  F FD+ D F
Sbjct: 352 FDTTFPFDNPDFF 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121377|gb|ACV92008.1| WRKY transcription factor 6 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/377 (59%), Positives = 266/377 (70%), Gaps = 29/377 (7%)

Query: 5   TMDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSL 64
           +M+ +   LI+EL+QGKELAK+L NHLNPSSS E R+FLV +ILSSYEKALS+LN+   +
Sbjct: 4   SMEWEHKTLISELSQGKELAKQLSNHLNPSSSLEARQFLVDKILSSYEKALSLLNWGALV 63

Query: 65  -QSNKLDITMVESPRSFPNTATSPRSDASDQD---YCKDVVSKKRKTMPQWTEQVKVTSG 120
            Q  K  I  VE   S  N+  SPRS+ SDQD    C   V KKRK  P+WTEQVKV SG
Sbjct: 64  DQQPKPTIGTVEPLHSLANS--SPRSEVSDQDCKEECNKDVYKKRKIQPRWTEQVKVCSG 121

Query: 121 TALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVT 180
           T LEG LDDGY WRKYGQKDILG NFPRGYYRCTHRH++GCLATKQVQRSD+D S+FEVT
Sbjct: 122 TGLEGPLDDGYSWRKYGQKDILGANFPRGYYRCTHRHSQGCLATKQVQRSDEDHSIFEVT 181

Query: 181 YRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQK-----------ESEEKPKEANGV 229
           Y+GRH C+Q S   LAS S         KN C  Q K             EEKPK    +
Sbjct: 182 YQGRHTCNQASPSPLASPSP--------KNDCSKQSKYHRKQQQQLQLLREEKPKPTEEI 233

Query: 230 MLNFGAE-LRVKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSP 288
            +NFG++ ++VK+EDL + + IF PFSFP  S+G E  N E+N+F + M++N+F+G FSP
Sbjct: 234 SVNFGSDFVQVKNEDLGSKDDIFPPFSFPCTSLGNE--NEENNIFTESMMENSFLGSFSP 291

Query: 289 TFISPATSESNYFSMSPCHMTNFGLGY-DVQTPESDLKAEIISTPTSVINSPFGDFDFSL 347
            FISPATSESNYFSMSPCHM +FG+GY +VQTPES+L  EIIS PTSV NSP GDFD S+
Sbjct: 292 AFISPATSESNYFSMSPCHMNSFGIGYPNVQTPESELTTEIISAPTSVTNSPIGDFDISI 351

Query: 348 TKEDLDPNFQFDDLDCF 364
              D D  F FD+ D F
Sbjct: 352 DNVDFDTTFPFDNPDFF 368

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40846374|gb|AAR92477.1| putative WRKY transcription factor 30 [Vitis aestivalis]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/364 (56%), Positives = 255/364 (70%), Gaps = 31/364 (8%)

Query: 9   DQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNK 68
           + N LI EL QG+E+A +L+NHL PSSS ETREFLV++ILSSYEKALSML         K
Sbjct: 8   EHNTLINELTQGREMANQLKNHLTPSSSRETREFLVEKILSSYEKALSML---------K 58

Query: 69  LDITMVESPRSFPNTATSPRSDASDQDY----CKDVVSKKRKTMPQWTEQVKVTSGTALE 124
               + E P S P +  SPRS+ S+QD+     KDV  KKRKTMP+WTEQV+VT GT  E
Sbjct: 59  CGGFVSELPHSLPES--SPRSEGSNQDFKDQAGKDVF-KKRKTMPRWTEQVRVTIGTVPE 115

Query: 125 GTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGR 184
           G LDDGY WRKYGQKDILG +FPRGY+RCTHRHA+GCLATKQVQRSD+DPS++EVTYRGR
Sbjct: 116 GPLDDGYSWRKYGQKDILGASFPRGYFRCTHRHAQGCLATKQVQRSDEDPSIYEVTYRGR 175

Query: 185 HKCSQNSHLALASTSSTKQVSIDQKNPCCNQ----QKESEEKPKEANGVMLNFGAELRVK 240
           H C Q S +A AS      V +D++ P   +     ++ +++P+EA  ++  FG  L+VK
Sbjct: 176 HTCIQGSRVAPASV-----VLVDKEEPIEKKVSYEPEQQQQQPQEAEKIVSGFGTGLKVK 230

Query: 241 SEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNY 300
           +EDLD+ E IF  FSFP       +    D +F + MI+N+ MGGFSP+F+SPATSESNY
Sbjct: 231 TEDLDSREKIFPSFSFP-----LSDSETVDKIFAESMIENSLMGGFSPSFLSPATSESNY 285

Query: 301 FSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNFQFDD 360
           F +SPC M +FG+G+ V T ESDL  E IS PTSV NSP GD+ F L   D DP+F FD+
Sbjct: 286 FPVSPCQMNSFGMGHSVYTTESDL-TENISAPTSVTNSPIGDYSFPLDPVDFDPDFPFDN 344

Query: 361 LDCF 364
            + F
Sbjct: 345 PEFF 348

Source: Vitis aestivalis

Species: Vitis aestivalis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454483|ref|XP_002281031.1| PREDICTED: probable WRKY transcription factor 46 [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/364 (56%), Positives = 255/364 (70%), Gaps = 31/364 (8%)

Query: 9   DQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNK 68
           + N LI EL QG+E+A +L+NHL PSSS ETREFLV++ILSSYEKALSML         K
Sbjct: 8   EHNTLINELTQGREMANQLKNHLTPSSSRETREFLVEKILSSYEKALSML---------K 58

Query: 69  LDITMVESPRSFPNTATSPRSDASDQDY----CKDVVSKKRKTMPQWTEQVKVTSGTALE 124
               + E P S P   +SPRS+ S+QD+     KDV  KKRKT+P+WTEQV+VT GT  E
Sbjct: 59  CGGFVSELPHSLP--GSSPRSEGSNQDFKDQAGKDVF-KKRKTLPRWTEQVRVTIGTVPE 115

Query: 125 GTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGR 184
           G LDDGY WRKYGQKDILG NFPRGY+RCTHRHA+GCLATKQVQRSD+DPS++EVTYRGR
Sbjct: 116 GPLDDGYSWRKYGQKDILGANFPRGYFRCTHRHAQGCLATKQVQRSDEDPSIYEVTYRGR 175

Query: 185 HKCSQNSHLALASTSSTKQVSIDQKNPCCNQ----QKESEEKPKEANGVMLNFGAELRVK 240
           H C Q S +A AS      V +D++ P   +     ++ +++P+EA  ++  FG  L+VK
Sbjct: 176 HTCIQGSRVAPASV-----VLVDKEEPIEKKVSYEPEQQQQQPQEAEQIVSGFGTGLKVK 230

Query: 241 SEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNY 300
           +EDLD+ E IF  FSFP       +    D +F + MI+N+ MGGFSP+F+SPATSESNY
Sbjct: 231 TEDLDSREKIFPSFSFP-----LSDSETVDKIFAESMIENSLMGGFSPSFLSPATSESNY 285

Query: 301 FSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNFQFDD 360
           F +SPC M +FG+G+ V T ESDL  E IS PTSV NSP GD+ F L   D DP+F FD+
Sbjct: 286 FPVSPCQMNSFGMGHSVYTTESDL-TENISAPTSVTNSPIGDYSFPLDPVDFDPDFPFDN 344

Query: 361 LDCF 364
            + F
Sbjct: 345 PEFF 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067962|ref|XP_002302620.1| predicted protein [Populus trichocarpa] gi|222844346|gb|EEE81893.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/367 (56%), Positives = 259/367 (70%), Gaps = 15/367 (4%)

Query: 5   TMDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSL 64
           +M+ +Q  L++ELAQGKELAK+LRNHLNPSSS E R+ LV++ILSSYEKALS+LN    +
Sbjct: 4   SMEWEQKTLVSELAQGKELAKQLRNHLNPSSSLEARQSLVEKILSSYEKALSVLNRGALV 63

Query: 65  QSN-KLDITMVESPRSFPNTATSPRSDASDQDYCKDV----VSKKRKTMPQWTEQVKVTS 119
               K  I ++ESP SF N+  SP S+ SDQD CK+     V+KKRKT P+ TEQVKV  
Sbjct: 64  ADQPKPTIGIMESPHSFSNS--SPWSEVSDQD-CKEEWNKDVNKKRKTQPRRTEQVKVCP 120

Query: 120 GTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEV 179
           GT LEG LDDG+ WRKYGQKDILG NFPRGYYRCTHRH++GCLATKQVQRSD++ S+FEV
Sbjct: 121 GTGLEGPLDDGHSWRKYGQKDILGANFPRGYYRCTHRHSQGCLATKQVQRSDENHSIFEV 180

Query: 180 TYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGVMLNFGAEL-R 238
           TYRGRH C Q S   +AS S     S   K    + Q++ EEKPK +  +  +FG +  +
Sbjct: 181 TYRGRHTCKQASTPPVASPSLENDFSKQSK---YHSQQQHEEKPKPSKEISRHFGFDCNQ 237

Query: 239 VKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSES 298
           VK+EDL + + IF  FSFP  S G E  N E+N+F + MI+N+F+G FSPTFIS  TSES
Sbjct: 238 VKNEDLGSKDGIFPFFSFPCTSSGNE--NEENNIFTESMIENSFLGNFSPTFISSTTSES 295

Query: 299 NYFSMSPCHMTNFGLG-YDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNFQ 357
           NYFS+SPCHM +FG+G  +VQT   +L  E IS PTSV NSP  D D S+   D D  F 
Sbjct: 296 NYFSVSPCHMNSFGIGSQNVQTQGCELTTEKISAPTSVTNSPIRDLDISIDYVDFDTTFP 355

Query: 358 FDDLDCF 364
           FD+ + F
Sbjct: 356 FDNPEFF 362

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745413|emb|CBI40493.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 193/343 (56%), Positives = 231/343 (67%), Gaps = 49/343 (14%)

Query: 9   DQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNK 68
           + N LI EL QG+E+A +L+NHL PSSS ETREFLV++ILSSYEKALSML         K
Sbjct: 8   EHNTLINELTQGREMANQLKNHLTPSSSRETREFLVEKILSSYEKALSML---------K 58

Query: 69  LDITMVESPRSFPNTATSPRSDASDQDY----CKDVVSKKRKTMPQWTEQVKVTSGTALE 124
               + E P S P   +SPRS+ S+QD+     KDV  KKRKT+P+WTEQV+VT GT  E
Sbjct: 59  CGGFVSELPHSLP--GSSPRSEGSNQDFKDQAGKDVF-KKRKTLPRWTEQVRVTIGTVPE 115

Query: 125 GTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGR 184
           G LDDGY WRKYGQKDILG NFPRGY+RCTHRHA+GCLATKQVQRSD+DPS++EVTYRGR
Sbjct: 116 GPLDDGYSWRKYGQKDILGANFPRGYFRCTHRHAQGCLATKQVQRSDEDPSIYEVTYRGR 175

Query: 185 HKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGVMLNFGAELRVKSEDL 244
           H C Q S +A AS                           EA  ++  FG  L+VK+EDL
Sbjct: 176 HTCIQGSRVAPAS---------------------------EAEQIVSGFGTGLKVKTEDL 208

Query: 245 DAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNYFSMS 304
           D+ E IF  FSFP       +    D +F + MI+N+ MGGFSP+F+SPATSESNYF +S
Sbjct: 209 DSREKIFPSFSFP-----LSDSETVDKIFAESMIENSLMGGFSPSFLSPATSESNYFPVS 263

Query: 305 PCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSL 347
           PC M +FG+G+ V T ESDL  E IS PTSV NSP GD+ F L
Sbjct: 264 PCQMNSFGMGHSVYTTESDL-TENISAPTSVTNSPIGDYSFPL 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399119|gb|ADL36854.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  337 bits (863), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 188/362 (51%), Positives = 241/362 (66%), Gaps = 22/362 (6%)

Query: 2   KRSTMDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYS 61
           KR +M+R+Q  L +EL QGKELA++L +HL+ SSS E R+FL+ +IL SYEKALS+L  S
Sbjct: 3   KRKSMEREQESLTSELTQGKELAEQLMSHLHHSSSEEKRDFLISKILFSYEKALSLLTGS 62

Query: 62  H-----SLQSNKLDITMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVK 116
                   +      TM+ESP SF N+  SP S+ SDQD  +  V KK KTMP WTE+VK
Sbjct: 63  GDGSDGESKHTTARETMLESPTSFGNS--SPLSEISDQDCKRKNVFKKTKTMPSWTEEVK 120

Query: 117 VTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSM 176
           V+SGT L+G LDDGY WRKYGQK+ILG N PRGYYRCTHR  +GC+ATKQVQ+SD DP+ 
Sbjct: 121 VSSGTGLDGGLDDGYSWRKYGQKNILGANHPRGYYRCTHRGTQGCVATKQVQKSDADPTT 180

Query: 177 FEVTYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGVMLNFG-A 235
           F +TYRG H C++ S LA       K+     +N     +K  +  P+    +  +FG A
Sbjct: 181 FVLTYRGVHTCNKASQLA-----RVKEGLKGNQNTTLEVKKAKQFAPE----MSFSFGRA 231

Query: 236 ELRVKSEDLDAAES-IFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFIS-P 293
            LRVK+E LDA E  IFSPFSFP   I  E +   +++F   M+ NN +  ++P F S P
Sbjct: 232 GLRVKTEHLDAREKDIFSPFSFPSTPIESEKVG--EHIFCSTMMANNLVDSYAPIFESPP 289

Query: 294 ATSESNYFSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLD 353
           A  ES+Y ++SPCHM++FGL +DVQT ESDL  EIIS PTSV NSP GDFDFS+   +  
Sbjct: 290 AIFESDYLAVSPCHMSSFGLAHDVQTSESDL-TEIISAPTSVTNSPIGDFDFSIDDFEFP 348

Query: 354 PN 355
           P+
Sbjct: 349 PD 350

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541688|ref|XP_002511908.1| WRKY transcription factor, putative [Ricinus communis] gi|223549088|gb|EEF50577.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 194/361 (53%), Positives = 242/361 (67%), Gaps = 36/361 (9%)

Query: 6   MDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQ 65
           M+R+Q IL+ EL QGKELA++LRNHLN  SS E R+ LV++ILSSYEKALSMLN+  S  
Sbjct: 1   MEREQKILVNELTQGKELAEQLRNHLNNISSFEMRQGLVEQILSSYEKALSMLNWDASAI 60

Query: 66  SNKLDITMVESPRS-FPNTATSPRSDASDQDYCKDV----VSKKRKTMPQWTEQVKVTSG 120
             K  IT +ESP S +   + SPRS+ SDQD CKD     V KKRKT P+WT  ++V S 
Sbjct: 61  ETKPIITTLESPHSNYAKRSPSPRSEVSDQD-CKDQCHGGVYKKRKTQPRWT--LRVCSE 117

Query: 121 TALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVT 180
           + +EG  DDGY WRKYGQKDILG NFPR YYRCTHRH++GCLATKQVQRSD DP++FEV 
Sbjct: 118 SGMEGPPDDGYNWRKYGQKDILGANFPRSYYRCTHRHSQGCLATKQVQRSDQDPTIFEVN 177

Query: 181 YRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGVMLNFGAELRVK 240
           Y G+HKC  +S LA +S S     S  ++N    Q ++ E+KPK  N +  N+   L  K
Sbjct: 178 YSGKHKCLHSSRLATSSPSPINDKS--EQNKDNFQLQQLEDKPKPLNELSFNYKDGL--K 233

Query: 241 SEDLDAAESIFSPFSFPHES-IGQENINVEDNLFLDGMIDNNFMGGF-SPTFISPATSES 298
           SEDLD    IF  FSFP  S +G EN     +++ + +I+NN +G   SP FISPATSES
Sbjct: 234 SEDLD----IFPSFSFPDASYMGNEN-----DIYRESLIENNLLGSLSSPAFISPATSES 284

Query: 299 NYFSMSPCHMTNFGLGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNFQF 358
           NYFS+SPCH       Y V+TPESD      S PTSV+NSP G +D S+   + D +F F
Sbjct: 285 NYFSVSPCH-------YSVRTPESD------SLPTSVVNSPIGIWDISIDNVEFDASFPF 331

Query: 359 D 359
           +
Sbjct: 332 E 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573221|ref|XP_003554762.1| PREDICTED: probable WRKY transcription factor 41-like [Glycine max]

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/363 (50%), Positives = 234/363 (64%), Gaps = 12/363 (3%)

Query: 1   MKRSTMDRDQNILITELAQGKELAKRLRNHLNPSS--SPETREFLVQEILSSYEKALSML 58
           M+ ST  R    LI EL QGKEL K+L NHL  SS  S +T E  V++IL SYEKAL+ML
Sbjct: 1   MEEST-KRKHTSLIHELIQGKELTKQLSNHLVSSSPMSHQTNELFVEKILLSYEKALTML 59

Query: 59  NYSHSL-QSNKLDITMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKV 117
           N+   + ++      +++S  SF N   SPRS+  D++       KKRKTMP+WTEQVK+
Sbjct: 60  NWGSIMGEAKTTSGNIMDSHCSFTNGG-SPRSEVVDRELEHKAALKKRKTMPRWTEQVKI 118

Query: 118 TSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMF 177
            S   LEG+LDDGY WRKYGQKDIL   FPRGYYRCTHR+ +GCLATKQVQRSD+DP+  
Sbjct: 119 CSRRGLEGSLDDGYSWRKYGQKDILRAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTI 178

Query: 178 EVTYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGVMLNFGAEL 237
           EVTYRGRH C+Q  HL  A  S+ K  +   +N     Q   E+  ++   V+  F  EL
Sbjct: 179 EVTYRGRHTCTQAKHLNKAFPSNIK--ACLGENQFQKNQPLLEKIQQQTPEVIFTFETEL 236

Query: 238 RVKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSE 297
           +VK+E+L+  E IF  FSFP  SIG EN   EDN+  + M +N+FM  FSP F+SPATSE
Sbjct: 237 KVKTEELETKEDIFPWFSFPSPSIGSEN---EDNMLPETMFENHFMESFSPVFLSPATSE 293

Query: 298 SNYFSMSPCHMTNFG-LGYDVQTPESDLKAEIISTPTSVINSPFGDFDFSLTKEDLDPNF 356
           SN F +S  H+ + G L  ++QT ESD+  EI+S PTSV  SP  D D  L K D D +F
Sbjct: 294 SNPFCLSAYHLDSTGLLCQNIQTSESDI-TEIVSAPTSVTKSPILDLDILLDKGDFDTDF 352

Query: 357 QFD 359
            F+
Sbjct: 353 PFN 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:2039119	295	WRKY46 "WRKY DNA-binding prote	0.505	0.623	0.422	2.5e-45
TAIR|locus:2136093	313	WRKY41 [Arabidopsis thaliana (	0.563	0.654	0.420	5.8e-40
TAIR|locus:2167428	303	WRKY30 "WRKY DNA-binding prote	0.469	0.564	0.435	6.3e-37
TAIR|locus:2128514	324	WRKY53 [Arabidopsis thaliana (	0.535	0.601	0.389	6.7e-33
TAIR|locus:2102539	294	WRKY70 "WRKY DNA-binding prote	0.571	0.707	0.310	3.3e-24
TAIR|locus:2064816	292	WRKY55 "WRKY DNA-binding prote	0.324	0.404	0.433	7.1e-20
TAIR|locus:2064806	346	WRKY54 "WRKY DNA-binding prote	0.475	0.5	0.314	2.1e-19
TAIR|locus:2195165	241	ABO3 "ABA overly sensitive mut	0.373	0.564	0.308	8e-17
TAIR|locus:2125043	298	WRKY22 [Arabidopsis thaliana (	0.554	0.677	0.328	8.2e-16
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.343	0.291	0.368	9.1e-16

TAIR|locus:2039119 WRKY46 "WRKY DNA-binding protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
 Identities = 84/199 (42%), Positives = 111/199 (55%)

Query:   101 VSKKRKTMPQWTEQVKVTSGTALE-GTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHAR 159
             V KKRK   + TE+VKV   T  E G++DDG+CWRKYGQK+I G   PR YYRCTHR  +
Sbjct:    76 VFKKRKVSEKNTEKVKVFVATEQENGSIDDGHCWRKYGQKEIHGSKNPRAYYRCTHRFTQ 135

Query:   160 GCLATKQVQRSDDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKES 219
              CLA KQVQ+SD DPS+FEV Y G H C+   ++    T++   VS+   N     +   
Sbjct:   136 DCLAVKQVQKSDTDPSLFEVKYLGNHTCN---NITSPKTTTNFSVSLTNTNIFEGNRVHV 192

Query:   220 EEKPKEANGVMLNFGAELRVKSEDLDAAESIFSPFSFPHESIGQENINVEDNLFLDGMID 279
              E+ ++          E+ +  EDL+  ++IF  FSF +  I  EN   + NLFL     
Sbjct:   193 TEQSEDMKPTK---SEEVMISLEDLENKKNIFRTFSFSNHEI--ENGVWKSNLFL----- 242

Query:   280 NNFMGGFSP-TFISPATSE 297
              NF+   SP T  S  TSE
Sbjct:   243 GNFVEDLSPATSGSAITSE 261

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2136093 WRKY41 [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 93/221 (42%), Positives = 132/221 (59%)

Query:     6 MDRDQNILITELAQGKELAKRLRNHLNPSSSP-------ETREFLVQEILSSYEKALSML 58
             M+ ++  L+ EL  G + AK+L+   +PS S        E +E L+  I+SS++KA+ ML
Sbjct:     4 MNWERRSLLNELIHGLKAAKQLQGSSSPSLSASSSYLTTEIKENLLHNIVSSFKKAILML 63

Query:    59 NYSHSLQSNKLDITM--VESPRSFPNTATS----PRSDASDQDYCKD--VVSKKRKTMPQ 110
             N S +  +  +++    +  P   P +  S    PRS+       K+  + SKKRK +P+
Sbjct:    64 NGSTTQHNPTIELAPDPLAHPGKVPGSPASITGNPRSEEFFNVRSKEFNLSSKKRKMLPK 123

Query:   111 WTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRS 170
             WTEQV+++    LEG  DD + WRKYGQKDILG  FPR YYRCT R+ + C ATKQVQRS
Sbjct:   124 WTEQVRISPERGLEGPHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWATKQVQRS 183

Query:   171 DDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQ-VSIDQKN 210
             D DP++FEVTYRG H CSQ   L     +  K  V+++ +N
Sbjct:   184 DGDPTIFEVTYRGTHTCSQGIPLPEKRETKPKHTVAVNYQN 224

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2167428 WRKY30 "WRKY DNA-binding protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 81/186 (43%), Positives = 118/186 (63%)

Query:    34 SSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDITMVESPRSFPNTATSPRSDASD 93
             +SS ETRE L ++IL SY K+L+++NYS      +LD               SP+SD SD
Sbjct:    34 ASSQETREHLAKKILQSYHKSLTIMNYS-----GELD--------QVSQGGGSPKSDDSD 80

Query:    94 QDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRC 153
             Q+    V+   +K+MP+W+ +V++  G  ++ TLDDG+ WRKYGQKDILG  FPRGYYRC
Sbjct:    81 QEPL--VIKSSKKSMPRWSSKVRIAPGAGVDRTLDDGFSWRKYGQKDILGAKFPRGYYRC 138

Query:   154 THRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCC 213
             T+R ++GC ATKQVQRSD++  + E++YRG H CSQ +++         + +  Q++   
Sbjct:   139 TYRKSQGCEATKQVQRSDENQMLLEISYRGIHSCSQAANVGTTMPIQNLEPNQTQEHGNL 198

Query:   214 NQQKES 219
             +  KES
Sbjct:   199 DMVKES 204

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

TAIR|locus:2128514 WRKY53 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 86/221 (38%), Positives = 127/221 (57%)

Query:    61 SHSLQSNKLDITMVE--SPRSFPNTATS----PRSD-------ASDQDYCKDVV--SKKR 105
             S S+Q     +T+V   +P S P +  S    PRS+       +S+  + +D +  SKKR
Sbjct:    76 SPSVQLIPTPVTVVPVANPGSVPESPASINGSPRSEEFADGGGSSESHHRQDYIFNSKKR 135

Query:   106 KTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATK 165
             K +P+W+E+V+++    LEG  DD + WRKYGQKDILG  FPR YYRCTHR  + C ATK
Sbjct:   136 KMLPKWSEKVRISPERGLEGPQDDVFSWRKYGQKDILGAKFPRSYYRCTHRSTQNCWATK 195

Query:   166 QVQRSDDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKE 225
             QVQRSD D ++FEVTYRG H CSQ       + + T  ++  +K      +    +KPK+
Sbjct:   196 QVQRSDGDATVFEVTYRGTHTCSQ-------AITRTPPLASPEKRQDTRVKPAITQKPKD 248

Query:   226 ANGVMLNFGAELRVKSEDLDAAESIFS-PFSFPHESIGQEN 265
                ++ +  + L V+++ LD  + +FS P + P  + G  N
Sbjct:   249 ---ILESLKSNLTVRTDGLDDGKDVFSFPDTPPFYNYGTIN 286

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010150 "leaf senescence" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2102539 WRKY70 "WRKY DNA-binding protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 69/222 (31%), Positives = 111/222 (50%)

Query:    13 LITELAQGKELAKRLRNHLN-PSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDI 71
             ++ +L +G +L  +L+  L+ P S  E    LV +IL  +   +S+L+    + S+   +
Sbjct:    11 VMNQLVEGHDLTTQLQQLLSQPGSGLED---LVAKILVCFNNTISVLDTFEPISSSS-SL 66

Query:    72 TMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGT-LDDG 130
               VE  ++          D+ D       V  KR       ++ K +    +E T L+D 
Sbjct:    67 AAVEGSQNASCDNDGKFEDSGDSRKRLGPVKGKRGCY----KRKKRSETCTIESTILEDA 122

Query:   131 YCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQN 190
             + WRKYGQK+IL   FPR Y+RCTH++ +GC ATKQVQ+ + +P MF +TY G H C+ N
Sbjct:   123 FSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSITYIGNHTCNTN 182

Query:   191 SHLALASTSSTKQV----SIDQKNPCCNQQKESEEKPKEANG 228
             +    + T          S D K+P  +   + E+ P   +G
Sbjct:   183 AETPKSKTCDHHDEIFMDSEDHKSPSLSTSMKEEDNPHRHHG 224

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;RCA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2064816 WRKY55 "WRKY DNA-binding protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 7.1e-20, P = 7.1e-20
 Identities = 55/127 (43%), Positives = 70/127 (55%)

Query:    83 TATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGT-L--DDGYCWRKYGQK 139
             TA   RS AS          ++R+   +  EQ  + +      T L  DD + WRKYGQK
Sbjct:   130 TAAVERSGASGSS-----TPRQRRRKDEGEEQTVLVAALRTGNTDLPPDDNHTWRKYGQK 184

Query:   140 DILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKC-SQNSHLALAST 198
             +ILG  FPR YYRCTH+    C A KQVQR +DDP  F VTYRG H C +  +  A ++T
Sbjct:   185 EILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSHTCYNSTAPTASSAT 244

Query:   199 SSTKQVS 205
              ST  +S
Sbjct:   245 PSTIPIS 251

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2064806 WRKY54 "WRKY DNA-binding protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 57/181 (31%), Positives = 94/181 (51%)

Query:    34 SSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDITMVESPRSF--PNTATSPRSDA 91
             S  P+  + L+ +IL S+ K +S+L+ S    +  + I +  S  +    ++AT    + 
Sbjct:    56 SGGPDPVDELMSKILGSFHKTISVLD-SFDPVAVSVPIAVEGSWNASCGDDSATPVSCNG 114

Query:    92 SDQDYCKDV---VSKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPR 148
              D    K     V K ++    +T + +  +      + +D Y WRKYGQK+IL   FPR
Sbjct:   115 GDSGESKKKRLGVGKGKRGC--YTRKTRSHTRIVEAKSSEDRYAWRKYGQKEILNTTFPR 172

Query:   149 GYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQVSIDQ 208
              Y+RCTH+  +GC ATKQVQ+ D D  MF++TY G H C+ N      +    +++ +D 
Sbjct:   173 SYFRCTHKPTQGCKATKQVQKQDQDSEMFQITYIGYHTCTANDQTHAKTEPFDQEIIMDS 232

Query:   209 K 209
             +
Sbjct:   233 E 233

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2195165 ABO3 "ABA overly sensitive mutant 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
 Identities = 45/146 (30%), Positives = 69/146 (47%)

Query:    64 LQSNKLDITMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTAL 123
             L S  L ++ V SP         P  ++S +D    V  +  K      + +++    + 
Sbjct:    45 LDSFSLALSSVNSPNR------QPHHESSSRDMAGLVPQRSSKKKICGVKGLEIYRDDSP 98

Query:   124 EGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRG 183
                LDDG+ WRKYGQK I    + R YYRC +   + C ATK+VQ   D P ++  TY G
Sbjct:    99 NPRLDDGFTWRKYGQKTIKTSLYQRCYYRCAYAKDQNCYATKRVQMIQDSPPVYRTTYLG 158

Query:   184 RHKCSQ-NSHLALASTSSTKQVSIDQ 208
             +H C     H    +T  ++ ++ DQ
Sbjct:   159 QHTCKAFGVH---DNTYGSEMINFDQ 181

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2125043 WRKY22 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 8.2e-16, P = 8.2e-16
 Identities = 74/225 (32%), Positives = 99/225 (44%)

Query:    32 NPSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDITMVESPRSFPNTATSPRSDA 91
             N  S  E R+        S   + S +NY    +  +      + P S   ++ S  S  
Sbjct:    45 NAVSFGEIRDLYTPFTQESVVSSFSCINYPEEPRKPQNQ----KRPLSLSASSGSVTSKP 100

Query:    92 SDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYY 151
             S  +  +   SK+RK       Q K     A E    D + WRKYGQK I G  +PRGYY
Sbjct:   101 SGSNTSR---SKRRKI------QHKKVCHVAAEALNSDVWAWRKYGQKPIKGSPYPRGYY 151

Query:   152 RCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQNSHL-ALASTSSTKQVSIDQ-- 208
             RC+   ++GCLA KQV+R+  DP MF VTY   H     +H  +LA   ST+Q   DQ  
Sbjct:   152 RCST--SKGCLARKQVERNRSDPKMFIVTYTAEHNHPAPTHRNSLAG--STRQKPSDQQT 207

Query:   209 -KNPCCNQQKESEEKPKEANGVMLNFGAELRVKSEDLDAAESIFS 252
              K+P       S      A+  +L     L V   DLD  E + S
Sbjct:   208 SKSPTTTIATYSSSPVTSADEFVLPVEDHLAVG--DLDGEEDLLS 250

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010150 "leaf senescence" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 9.1e-16, P = 9.1e-16
 Identities = 49/133 (36%), Positives = 71/133 (53%)

Query:    70 DITMVESPRSFPNTATSP-RSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGTLD 128
             +  +  S  S P T+ S  +S   D+    D    KR+   + + +  V+ G+    +L+
Sbjct:   290 EFAVPRSTNSNPGTSDSGCKSSQCDEGELDDPSRSKRRKNEKQSSEAGVSQGSVESDSLE 349

Query:   129 DGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCS 188
             DG+ WRKYGQK + G  +PR YYRCT   +  C A K V+R+ DDP  F  TY G+H   
Sbjct:   350 DGFRWRKYGQKVVGGNAYPRSYYRCT---SANCRARKHVERASDDPRAFITTYEGKH--- 403

Query:   189 QNSHLALASTSST 201
              N HL L+  SS+
Sbjct:   404 -NHHLLLSPPSSS 415

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XIV0172 hypothetical protein (365 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	364
smart00774	59	smart00774, WRKY, DNA binding domain	8e-36
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	1e-31

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  124 bits (313), Expect = 8e-36
 Identities = 41/61 (67%), Positives = 45/61 (73%), Gaps = 2/61 (3%)

Query: 127 LDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHK 186
           LDDGY WRKYGQK I G  +PR YYRCT  + +GC A KQVQRSDDDPS+ EVTY G H 
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCT--YTQGCPAKKQVQRSDDDPSVVEVTYEGEHT 58

Query: 187 C 187
            
Sbjct: 59  H 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  113 bits (284), Expect = 1e-31
 Identities = 36/63 (57%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 127 LDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHK 186
           LDDGY WRKYGQK + G  FPR YYRCT     GC   KQV+RS DDP + E+TY G H 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTS---PGCPVKKQVERSSDDPQIVEITYEGEHN 57

Query: 187 CSQ 189
             +
Sbjct: 58  HPK 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	93.37

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=1.3e-30  Score=199.20  Aligned_cols=59  Identities=71%  Similarity=1.236  Sum_probs=57.1

Q ss_pred             cCCCccccccCccccCCCCCCccceeeccCCCCCCcccccccccCCCCCeEEEEeeccCCC
Q 017895          127 LDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKC  187 (364)
Q Consensus       127 ~dDGy~WRKYGQK~I~gs~~PRsYYRCt~~~~~gC~A~KqVQr~~~dp~~~~vtY~G~Htc  187 (364)
                      ++|||.|||||||.|+|+++||+|||||+  ++||+|+|+|||+++||.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~--~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTY--SQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccc--cCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999  689999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=1.6e-30  Score=199.04  Aligned_cols=59  Identities=66%  Similarity=1.222  Sum_probs=52.1

Q ss_pred             cCCCccccccCccccCCCCCCccceeeccCCCCCCcccccccccCCCCCeEEEEeeccCCCC
Q 017895          127 LDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCS  188 (364)
Q Consensus       127 ~dDGy~WRKYGQK~I~gs~~PRsYYRCt~~~~~gC~A~KqVQr~~~dp~~~~vtY~G~Htc~  188 (364)
                      ++|||.|||||||.|+|++|||+|||||+.   +|+|+|+|||+.+|+.+++|||+|+|||.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~---~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP---GCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT---TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc---ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            589999999999999999999999999994   99999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.37  E-value=0.051  Score=39.66  Aligned_cols=52  Identities=25%  Similarity=0.470  Sum_probs=28.8

Q ss_pred             ccCCCccccccCccccCCCCCCccceeeccCCCCCCcccccccccCCCCCeEEEEeeccCCC
Q 017895          126 TLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKC  187 (364)
Q Consensus       126 ~~dDGy~WRKYGQK~I~gs~~PRsYYRCt~~~~~gC~A~KqVQr~~~dp~~~~vtY~G~Htc  187 (364)
                      .+-|||.-+++...      ..+.|+||+.+...+|.|+=.+.  + +...+ +...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~-~~~~~-~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--A-GDGRV-VRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE-----TTEE-EE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--C-CCCEE-EECCCccCC
Confidence            46789877765554      35789999999888999998887  2 23344 333489987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	364
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		3e-11
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-10

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 127 LDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRH 185
           LDDGY WRKYGQK + G  +PR YY+CT     GC   K V+R+  DP     TY G+H
Sbjct: 17  LDDGYRWRKYGQKVVKGNPYPRSYYKCT---TPGCGVRKHVERAATDPKAVVTTYEGKH 72

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 127 LDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRH 185
           ++DGY WRKYGQK + G  +PR YYRC+   + GC   K V+RS  D  +   TY G+H
Sbjct: 14  VNDGYRWRKYGQKSVKGSPYPRSYYRCS---SPGCPVKKHVERSSHDTKLLITTYEGKH 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	364
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	2e-27
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	6e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  102 bits (255), Expect = 2e-27
 Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 125 GTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGR 184
             LDDGY WRKYGQK + G  +PR YY+CT     GC   K V+R+  DP     TY G+
Sbjct: 15  DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGK 71

Query: 185 H 185
           H
Sbjct: 72  H 72

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  100 bits (252), Expect = 6e-27
 Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 125 GTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGR 184
             ++DGY WRKYGQK + G  +PR YYRC+     GC   K V+RS  D  +   TY G+
Sbjct: 12  DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGK 68

Query: 185 HKC 187
           H  
Sbjct: 69  HDH 71

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 55/327 (16%), Positives = 103/327 (31%), Gaps = 87/327 (26%)

Query: 8   RDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQ-----------EILSSYEKALS 56
           R + +    L+        L +H    +  E +  L++           E+L++  + LS
Sbjct: 273 RFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 57  ML------------NYSHSLQSNKLDITM-----VESP---RS-------FPNTATSPR- 88
           ++            N+ H +  +KL   +     V  P   R        FP +A  P  
Sbjct: 332 IIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 89  ------SDASDQDYCKDVVSK--KRKTMPQWTE-------------QVKVTSGTALEGTL 127
                  D    D    VV+K  K   + +  +             +VK+ +  AL  ++
Sbjct: 391 LLSLIWFDVIKSD-VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 128 DDGYCWRKYGQKDILGRNFPRGYYRCTH--RHARGCLATKQVQRSDDDPSMFEVTY---- 181
            D Y   K    D L   +   Y+  +H   H +            +  ++F + +    
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNI-------EHPERMTLFRMVFLDFR 501

Query: 182 ----RGRHKCSQNSHLALASTSSTKQVSIDQKNPCCNQQKESEEKPKEANGVMLNFGAEL 237
               + RH  +  +  A  S  +T Q     K   C+   + E         +      L
Sbjct: 502 FLEQKIRHDST--AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559

Query: 238 RVKSEDLDAAESIFSPFSFPHESIGQE 264
            + S+  D             E+I +E
Sbjct: 560 -ICSKYTDLLRIALMA---EDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 46/310 (14%), Positives = 94/310 (30%), Gaps = 81/310 (26%)

Query: 93  DQDYCKDVVSKKRKTMPQWTEQVK--VTSGTALEGTLDDGYCWRKYGQK-------DILG 143
           + D CKDV    +  +    E++   + S  A+ GTL   +      ++       ++L 
Sbjct: 32  NFD-CKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 144 RNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQNSHLALASTSSTKQ 203
            N+               L +  ++     PSM    Y  +     N +       +   
Sbjct: 89  INYK-------------FLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVF----AKYN 130

Query: 204 VSIDQKNPCCNQQKESEEKPKEANGV----MLNFGAELRVKSEDLDAAESIFSP---FSF 256
           VS  Q      + +++  + + A  V    +L  G     K+  + A +   S       
Sbjct: 131 VSRLQP---YLKLRQALLELRPAKNVLIDGVLGSG-----KTW-V-ALDVCLSYKVQCKM 180

Query: 257 PHE----SIGQENINVEDNLFLDGMIDNNFMGGFSPTFISPATSESNYFSMSPCHMTNFG 312
             +    ++   N        L+ +     +    P + S +   SN       H     
Sbjct: 181 DFKIFWLNLKNCN---SPETVLEML--QKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAE 233

Query: 313 L-------GY--------DVQTPES----DLKAEIISTPT---SVINSPFGDFDFSLTKE 350
           L        Y        +VQ  ++    +L  +I+ T T    V +         ++ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLD 292

Query: 351 DLDPNFQFDD 360
                   D+
Sbjct: 293 HHSMTLTPDE 302

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.97
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.96

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.97  E-value=2.6e-31  Score=211.03  Aligned_cols=64  Identities=44%  Similarity=0.937  Sum_probs=60.8

Q ss_pred             ccccCCCccccccCccccCCCCCCccceeeccCCCCCCcccccccccCCCCCeEEEEeeccCCCCCC
Q 017895          124 EGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQN  190 (364)
Q Consensus       124 ~~~~dDGy~WRKYGQK~I~gs~~PRsYYRCt~~~~~gC~A~KqVQr~~~dp~~~~vtY~G~Htc~~~  190 (364)
                      ..+++|||.|||||||.|+|++|||+|||||+   +||+|+|+|||+++||.+++|||+|+|||..+
T Consensus        11 ~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           11 FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             SSCCCCSSCEEEEEEECCTTCSSCEEEEEECS---TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             CCcCCCCchhhhCcccccCCCCCceeEeEcCC---CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            46799999999999999999999999999997   79999999999999999999999999999764

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.96  E-value=6.3e-31  Score=209.70  Aligned_cols=64  Identities=47%  Similarity=0.936  Sum_probs=60.7

Q ss_pred             ccccCCCccccccCccccCCCCCCccceeeccCCCCCCcccccccccCCCCCeEEEEeeccCCCCCC
Q 017895          124 EGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQN  190 (364)
Q Consensus       124 ~~~~dDGy~WRKYGQK~I~gs~~PRsYYRCt~~~~~gC~A~KqVQr~~~dp~~~~vtY~G~Htc~~~  190 (364)
                      ..+++|||.|||||||.|+|++|||+|||||+   +||+|+|+|||+++||.+++|||+|+|||..+
T Consensus        14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CCcCCCCchhhhCcccccCCCcCeeEEeecCc---CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            36799999999999999999999999999998   79999999999999999999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	364
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-26

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.0 bits (244), Expect = 2e-26
 Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 125 GTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGR 184
             LDDGY WRKYGQK + G  +PR YY+CT     GC   K V+R+  DP     TY G+
Sbjct: 8   DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGK 64

Query: 185 HKCSQNS 191
           H     +
Sbjct: 65  HNHDLPA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	364
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.97

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=5.2e-32  Score=210.50  Aligned_cols=63  Identities=48%  Similarity=0.961  Sum_probs=60.3

Q ss_pred             cccCCCccccccCccccCCCCCCccceeeccCCCCCCcccccccccCCCCCeEEEEeeccCCCCCC
Q 017895          125 GTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRHARGCLATKQVQRSDDDPSMFEVTYRGRHKCSQN  190 (364)
Q Consensus       125 ~~~dDGy~WRKYGQK~I~gs~~PRsYYRCt~~~~~gC~A~KqVQr~~~dp~~~~vtY~G~Htc~~~  190 (364)
                      ..++|||.|||||||.|+|++|||+|||||+   +||+|+|+|||+++||.+++|||+|+|||..+
T Consensus         8 ~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~---~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           8 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ccCCCCcEecccCceeccCCCCceEEEEccc---cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            5799999999999999999999999999998   79999999999999999999999999999765