Citrus Sinensis ID: 017907

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGGWDNVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGQDSPAGGGQYSAGHHNSYGSSSWDDWDQKDKKEDTPKGTGSGNNDAWAGWDDAKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL
cHHHHHHHHHHccccccccccccccccccEEccccEEEEccccccccccccEEEEEEccccccccHHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHEcccccHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MAATRRlrdlqsqpgnkicvdcaqknpqwasVSYGVFMCLecsgkhrglgvHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLsqygipketdivTKYNTNAASIYRDRIQAIaegrpwrdppvvketlnagksssrpplaqsasvggvgrngnygnhggwdNVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKvreggydhkvnETVNVVTAktseigqrTWGIMKGVMAMASQKVEEYTKegwnndnwqrnesesngyyqefnhgnkgqdspagggqysaghhnsygssswddwdqkdkkedtpkgtgsgnndawagwddakddgydnfyqsasdkkalghngksdatwtgggfl
maatrrlrdlqsqpgnkICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIaegrpwrdppVVKETlnagksssrpplaqsasvGGVGRNGNYGNHGGWDNVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTskvreggydhkvnetvnvvtaktseigqrtwgIMKGVMAMASQKVEEYTKegwnndnwQRNESESNGYYQEFNHGNKGQDSPAGGGQYSAGHHNSYGSSSWDDWDQKDKKedtpkgtgsgnndawagWDDAKDDGYDNFYQSasdkkalghngksdatwtgggfl
MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVggvgrngnygnhggWDNVLSAVSQGFGRISLvaasaaqsaatvvqaGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGQDSPAGGGQYSAGHHNSYGssswddwdqkdkkedTPKGTGSgnndawagwddakddgydnFYQSASDKKALGHNGKSDATWTGGGFL
****************KICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW********************************NGNYGNHGGWDNVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYT***W***********************************************************************WAGW*************************************
***TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQ*************************************************************************************************************************************************************************************************************************AKDD************************WTGGGFL
**********QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKET*****************VGGVGRNGNYGNHGGWDNVLSAVSQGFGRISLV*************AGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGQDSPAGGGQYSAGHHNS************************GNNDAWAGWDDAKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL
*AATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAE***************************************************************************************************************RTWGIMKGVMAMASQKVEEYTKEGWNNDNWQ***SES*GYY****HGN*********************************************************DGY*****************************
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MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGGWDNVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGQDSPAGGGQYSAGHHNSYGSSSWDDWDQKDKKEDTPKGTGSGNNDAWAGWDDAKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query364 2.2.26 [Sep-21-2011]
O80925456 ADP-ribosylation factor G yes no 0.346 0.276 0.804 4e-70
Q9M354 459 Probable ADP-ribosylation no no 0.376 0.298 0.818 6e-69
Q8N6T3406 ADP-ribosylation factor G yes no 0.329 0.295 0.508 3e-33
Q9EPJ9414 ADP-ribosylation factor G yes no 0.645 0.567 0.334 7e-33
Q62848415 ADP-ribosylation factor G yes no 0.329 0.289 0.475 2e-32
Q17R07 517 ADP-ribosylation factor G no no 0.296 0.208 0.509 1e-29
Q4KLN7 525 ADP-ribosylation factor G no no 0.304 0.211 0.5 2e-29
Q9D8S3 523 ADP-ribosylation factor G no no 0.304 0.212 0.5 2e-29
Q4R4C9 516 ADP-ribosylation factor G N/A no 0.296 0.209 0.490 5e-29
Q5R787 516 ADP-ribosylation factor G no no 0.296 0.209 0.490 9e-29
>sp|O80925|AGD7_ARATH ADP-ribosylation factor GTPase-activating protein AGD7 OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1 Back     alignment and function desciption
 Score =  265 bits (677), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 115/143 (80%), Positives = 132/143 (92%)

Query: 1   MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60
           MAA RRLR LQSQP NK+CVDC+QKNPQWAS+SYG+FMCLECSGKHRGLGVHISFVRSVT
Sbjct: 1   MAAARRLRTLQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVT 60

Query: 61  MDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
           MDSWSEIQIKKM+AGGNERLN FL+QYGI KETDI++KYN+NAAS+YRDRIQA+AEGR W
Sbjct: 61  MDSWSEIQIKKMDAGGNERLNNFLAQYGISKETDIISKYNSNAASVYRDRIQALAEGRQW 120

Query: 121 RDPPVVKETLNAGKSSSRPPLAQ 143
           RDPP+VKE++  G  + +PPL+Q
Sbjct: 121 RDPPIVKESVGGGLMNKKPPLSQ 143
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Involved in protein trafficking by controlling ARF1 activity; may participate in COPI vesicle formation at the Golgi complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M354|AGD6_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1 Back     alignment and function description
>sp|Q8N6T3|ARFG1_HUMAN ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9EPJ9|ARFG1_MOUSE ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2 Back     alignment and function description
>sp|Q62848|ARFG1_RAT ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1 Back     alignment and function description
>sp|Q17R07|ARFG3_BOVIN ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q4KLN7|ARFG3_RAT ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus norvegicus GN=Arfgap3 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2 Back     alignment and function description
>sp|Q4R4C9|ARFG3_MACFA ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q5R787|ARFG3_PONAB ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
296083475396 unnamed protein product [Vitis vinifera] 0.848 0.780 0.458 8e-76
255573655457 arf gtpase-activating protein, putative 0.417 0.332 0.815 2e-75
224090669 471 predicted protein [Populus trichocarpa] 0.439 0.339 0.798 4e-74
224138766 472 predicted protein [Populus trichocarpa] 0.442 0.341 0.795 5e-74
449520305 471 PREDICTED: probable ADP-ribosylation fac 0.428 0.331 0.822 4e-73
225440296 465 PREDICTED: probable ADP-ribosylation fac 0.392 0.307 0.882 4e-73
449439984457 PREDICTED: LOW QUALITY PROTEIN: ADP-ribo 0.392 0.312 0.875 2e-71
452090864145 aspartate aminotransferase, partial [Pru 0.387 0.972 0.888 4e-71
356572329 489 PREDICTED: ADP-ribosylation factor GTPas 0.420 0.312 0.759 1e-70
356505112 486 PREDICTED: ADP-ribosylation factor GTPas 0.260 0.195 0.838 1e-70
>gi|296083475|emb|CBI23433.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  290 bits (742), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 178/388 (45%), Positives = 221/388 (56%), Gaps = 79/388 (20%)

Query: 10  LQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQI 69
           LQS   NK CVDC QKNPQWASVSYG+FMCL+CSGKHRGLGVH+SFVRSVTMDSW +  +
Sbjct: 19  LQSLSSNKTCVDCHQKNPQWASVSYGIFMCLDCSGKHRGLGVHLSFVRSVTMDSWPDSHL 78

Query: 70  KKMEA--GGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVK 127
           KKMEA  GGN+ LN FLS  GIPK+TDI  KYNTNAA++YR+++QAIAE R W +PPVVK
Sbjct: 79  KKMEANSGGNDALNAFLSARGIPKDTDIPLKYNTNAAALYREKVQAIAENRRWTEPPVVK 138

Query: 128 ETLNAGKS----------------------------SSRP---PLAQSASVGGVGRNGN- 155
           E++   +S                            ++RP   P +Q     G G  G  
Sbjct: 139 ESVIKPRSVNSSSEMKKVQASMDGKAEFFERKVSQNATRPEGLPPSQGGKYVGFGSTGTR 198

Query: 156 -YGNHGGWDNVLS-AVSQGFGRISLVAASAAQSAATVVQAGTREFTSKVREGGYDHKVNE 213
                    +V+S AVS GFG +S+VA+SA QSAA  VQA T+E TSKVR+ GYD K   
Sbjct: 199 PISRSSSQSDVISDAVSAGFGLVSMVASSAVQSAANAVQASTKELTSKVRDAGYDEK--- 255

Query: 214 TVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEG---------------------W 252
            V+VV +KT+E+GQRTWGI+K VMA+A+ KVEEYT +G                     W
Sbjct: 256 -VSVVASKTTELGQRTWGIVKDVMALATLKVEEYTGDGVESKSGQENNDSFGQSPGESKW 314

Query: 253 NNDNWQRNESESNGYYQEFNHGNKGQ---------DSPAGGGQYSAGHHNSYGSSSWDDW 303
           N+DN    E +  G    +N GN GQ         ++   G   +    N      WDDW
Sbjct: 315 NSDNANAGE-DPKGSQWNWNDGNFGQYHAESKWNSNNANAGDCPTQNKWNGSPHKGWDDW 373

Query: 304 DQKDKKEDTP---KGTGSGNNDAWAGWD 328
                  D+P   K   S + + W GWD
Sbjct: 374 G-----PDSPVAAKPNKSKSEEVWVGWD 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573655|ref|XP_002527750.1| arf gtpase-activating protein, putative [Ricinus communis] gi|223532891|gb|EEF34663.1| arf gtpase-activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224090669|ref|XP_002309050.1| predicted protein [Populus trichocarpa] gi|222855026|gb|EEE92573.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224138766|ref|XP_002322896.1| predicted protein [Populus trichocarpa] gi|222867526|gb|EEF04657.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449520305|ref|XP_004167174.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225440296|ref|XP_002262606.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439984|ref|XP_004137765.1| PREDICTED: LOW QUALITY PROTEIN: ADP-ribosylation factor GTPase-activating protein AGD7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|452090864|gb|AGF95103.1| aspartate aminotransferase, partial [Prunus persica] Back     alignment and taxonomy information
>gi|356572329|ref|XP_003554321.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD7-like [Glycine max] Back     alignment and taxonomy information
>gi|356505112|ref|XP_003521336.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD7-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
TAIR|locus:2040691456 AGD7 "AT2G37550" [Arabidopsis 0.392 0.313 0.804 3.9e-108
TAIR|locus:2084360 459 AGD6 "AT3G53710" [Arabidopsis 0.376 0.298 0.818 2.1e-61
UNIPROTKB|F1N8K3419 ARFGAP1 "Uncharacterized prote 0.392 0.341 0.461 2.8e-38
FB|FBgn0020655468 ArfGAP1 "ADP-ribosylation fact 0.321 0.25 0.521 7.3e-38
UNIPROTKB|E2RHR0417 ARFGAP1 "Uncharacterized prote 0.392 0.342 0.451 1e-36
DICTYBASE|DDB_G0281627 608 DDB_G0281627 "Arf GTPase activ 0.357 0.213 0.466 4.6e-36
UNIPROTKB|F1MI54417 ARFGAP1 "Uncharacterized prote 0.321 0.280 0.521 5.7e-36
UNIPROTKB|Q8N6T3406 ARFGAP1 "ADP-ribosylation fact 0.321 0.288 0.521 7.2e-36
MGI|MGI:2183559414 Arfgap1 "ADP-ribosylation fact 0.321 0.282 0.487 7.2e-36
RGD|708452415 Arfgap1 "ADP-ribosylation fact 0.321 0.281 0.487 1.2e-35
TAIR|locus:2040691 AGD7 "AT2G37550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 647 (232.8 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
 Identities = 115/143 (80%), Positives = 132/143 (92%)

Query:     1 MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60
             MAA RRLR LQSQP NK+CVDC+QKNPQWAS+SYG+FMCLECSGKHRGLGVHISFVRSVT
Sbjct:     1 MAAARRLRTLQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVT 60

Query:    61 MDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
             MDSWSEIQIKKM+AGGNERLN FL+QYGI KETDI++KYN+NAAS+YRDRIQA+AEGR W
Sbjct:    61 MDSWSEIQIKKMDAGGNERLNNFLAQYGISKETDIISKYNSNAASVYRDRIQALAEGRQW 120

Query:   121 RDPPVVKETLNAGKSSSRPPLAQ 143
             RDPP+VKE++  G  + +PPL+Q
Sbjct:   121 RDPPIVKESVGGGLMNKKPPLSQ 143
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISS;IDA
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
TAIR|locus:2084360 AGD6 "AT3G53710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8K3 ARFGAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0020655 ArfGAP1 "ADP-ribosylation factor GTPase activating protein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHR0 ARFGAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281627 DDB_G0281627 "Arf GTPase activating protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MI54 ARFGAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N6T3 ARFGAP1 "ADP-ribosylation factor GTPase-activating protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2183559 Arfgap1 "ADP-ribosylation factor GTPase activating protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|708452 Arfgap1 "ADP-ribosylation factor GTPase activating protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_VI1742
hypothetical protein (471 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 2e-47
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 3e-42
COG5347319 COG5347, COG5347, GTPase-activating protein that r 2e-38
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 8e-29
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 5e-07
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 7e-07
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  156 bits (397), Expect = 2e-47
 Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 4/110 (3%)

Query: 5   RRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSW 64
           R LR+L+  PGNK+C DC   NP WAS++ G+F+C+ CSG HR LGVHIS VRS+T+D W
Sbjct: 2   RLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKW 61

Query: 65  SEIQIKKMEAGGNERLNTFLSQYGIPKE----TDIVTKYNTNAASIYRDR 110
           +  Q++ M+AGGN+R N F      P +    +    K  +   + Y ++
Sbjct: 62  TPEQLEFMKAGGNKRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEK 111

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 364
KOG0704386 consensus ADP-ribosylation factor GTPase activator 100.0
KOG0706454 consensus Predicted GTPase-activating protein [Sig 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 100.0
PLN03114395 ADP-ribosylation factor GTPase-activating protein 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 99.98
PLN03131 705 hypothetical protein; Provisional 99.95
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 99.95
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.84
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.77
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.6
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.55
KOG0702 524 consensus Predicted GTPase-activating protein [Sig 99.4
KOG0521785 consensus Putative GTPase activating proteins (GAP 89.2
PRK00085247 recO DNA repair protein RecO; Reviewed 82.94
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-77  Score=579.18  Aligned_cols=330  Identities=48%  Similarity=0.827  Sum_probs=271.5

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907            3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT   82 (364)
Q Consensus         3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~   82 (364)
                      ++|+|.+|+...+|++||||+++|||||||+||||||++|+|+||+||||||||||||||+|+++||++|++|||.++++
T Consensus         6 trr~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kMeaGGN~~~~e   85 (386)
T KOG0704|consen    6 TRRVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKMEAGGNERFRE   85 (386)
T ss_pred             HHHHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHHHhccchhHHH
Confidence            67777777777799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCC-CccccccchhHHHHHHHHHHHHcCCCCCCCCcchhcccCCCCCCCC-C-CCCC-----------C---
Q 017907           83 FLSQYGIPKET-DIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRP-P-LAQS-----------A---  145 (364)
Q Consensus        83 f~e~~~~~~e~-~I~~KY~s~aa~~yreki~a~~egr~w~~pp~~kE~~~~~~~~~~p-~-~~~~-----------~---  145 (364)
                      ||+.+.+.++. +|++||++++|++||+||++++|||+|.+||+++|..++  ...+| + +...           .   
T Consensus        86 FL~s~~~~~e~~~i~eKYns~aAa~yRdki~~laegr~w~d~~~~k~~~p~--~syt~a~~~~~~ss~~~~~~sq~~~~~  163 (386)
T KOG0704|consen   86 FLSSQGIYKETWPIREKYNSRAAALYRDKIAALAEGREWNDPPYLKEDNPA--QSYTSAAQLGSKSSETIYTISQLSNSA  163 (386)
T ss_pred             HHhhCccccccccHHHhhccHHHHHHHHHHHHHhcCCcccccccccccCcc--cccccCCCcCCCcCCcccccccchhhh
Confidence            99998866665 999999999999999999999999999999999999863  22333 1 1100           0   


Q ss_pred             ----------------CCCC--CCCCCCCCCCCC----------cccchhhhhccchhhHHHHHHHHHHHHHHHhhhhhh
Q 017907          146 ----------------SVGG--VGRNGNYGNHGG----------WDNVLSAVSQGFGRISLVAASAAQSAATVVQAGTRE  197 (364)
Q Consensus       146 ----------------~~~g--~~~ng~y~sqgg----------~~d~~ssLssG~g~fS~~A~~~A~~A~~~~~~~~k~  197 (364)
                                      ++.+  +.|.|+|.++|.          ++|+||.|++||++||++|+.+|+    |++++++.
T Consensus       164 ~~ke~~fa~~~~~n~srpd~lppsQggkY~GFGst~~~ppqs~~~~~~~s~ls~Gws~~s~~as~~a~----~~~~~~~~  239 (386)
T KOG0704|consen  164 AGKESYFAKRLSENQSRPDGLPPSQGGKYQGFGSTNAPPPQSNSQDDAMSVLSSGWSRLSTGASSAAS----VGQTATQK  239 (386)
T ss_pred             cchhHHHHHhcccccCCCCCCCcccCCcccccCCCCCCCCccccccchhhhhccccccccchhhhhhh----hhhhhhhh
Confidence                            1111  222355655544          778999999999999999988766    66677666


Q ss_pred             hhcccccccccchhchhhhhhhhhccccccchhhhhhhHHHHhhhhhhhhhhcCCCCccccccCCCCCccccccCCCCCC
Q 017907          198 FTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKG  277 (364)
Q Consensus       198 ~~~kvkeg~l~~~v~~~v~~va~Kv~e~g~~gw~~~~gv~~~~s~kvE~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~  277 (364)
                      ++ ||||| |++.|+..|++||.||+|||+|||++|+   .+++|++|+.          |+++...+.+||.+.++|..
T Consensus       240 ~s-kvkeg-l~~~~s~~v~~va~k~t~vG~r~W~~ls---~~~sq~~e~f----------q~~~s~g~~~~qn~~~~n~~  304 (386)
T KOG0704|consen  240 AS-KVKEG-LDDFVSDPVGTVASKVTEVGTRGWGLLS---AAVSQSVEDF----------QDSESVGGPYYQNSGQGNFS  304 (386)
T ss_pred             hh-hhhhh-hhhhcccchhhhhhhcccccccchhhhH---Hhhccccccc----------cccCccCCcccccccccccc
Confidence            65 99999 9999999999999999999999998888   8899999977          78888999999999998876


Q ss_pred             CCCCCCCCC-CCCCCCCCC-CCCCCCcCCCCCCC--CCCCCCCCCCCCCCCcCcc--CCCCCCccccccccccccccCCC
Q 017907          278 QDSPAGGGQ-YSAGHHNSY-GSSSWDDWDQKDKK--EDTPKGTGSGNNDAWAGWD--DAKDDGYDNFYQSASDKKALGHN  351 (364)
Q Consensus       278 ~~~~~~~~~-~~~~~~~~~-~~~~w~~w~~~~~~--~~~~~~~~~~~~~~w~g~~--~~~~~~~~~~~~~~~~~~~~~~~  351 (364)
                      =|++.++.+ ++-+|.+++ ++++|+.|...+..  +........+++.+|+|||  +++++  +.+|+.++++   .|+
T Consensus       305 sn~~~g~~q~~~~~~~~s~~~s~s~s~~~~n~~~~~s~~~gta~~~~ds~~~g~e~~~~k~~--~~~~~~a~dk---s~~  379 (386)
T KOG0704|consen  305 SNSKRGGWQFSSKGHEKSSLPSNSFSCFTENDQNSSSDSKGTASADDDSGWSGFEASDAKDD--ETSYQNAPDK---SHD  379 (386)
T ss_pred             ccccccccccccccccccCCCCccccccccCcccCcccccCccccCCCCcccccccCCCCcc--cccccccccc---ccC
Confidence            566666555 335555544 89999999987533  3333333445566899999  67777  4588888877   399


Q ss_pred             CCCCCcc
Q 017907          352 GKSDATW  358 (364)
Q Consensus       352 ~~~~~~~  358 (364)
                      |++|.+|
T Consensus       380 g~~d~aw  386 (386)
T KOG0704|consen  380 GWDDDAW  386 (386)
T ss_pred             CccccCC
Confidence            9999998

>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00085 recO DNA repair protein RecO; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 1e-33
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 1e-33
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-29
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 1e-27
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 1e-23
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 9e-20
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 3e-17
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 3e-16
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 3e-16
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 3e-16
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 7e-16
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 6e-15
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-14
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 6e-12
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 6e-12
3lvq_E 497 The Crystal Structure Of Asap3 In Complex With Arf6 8e-12
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 8e-10
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 1e-09
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 7   LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
           L++++ Q  N +C +C   NPQW SV+YG+++CLECSG+HRGLGVH+SFVRSVTMD W +
Sbjct: 28  LKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKD 87
Query: 67  IQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
           I+++KM+AGGN +   FL SQ        +  KYN+ AA+++RD++ A+AEGR W
Sbjct: 88  IELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREW 142
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
3o47_A329 ADP-ribosylation factor GTPase-activating protein 2e-62
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 7e-59
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 4e-58
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 8e-53
2owa_A138 Arfgap-like finger domain containing protein; zinc 8e-52
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 1e-51
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 4e-42
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 2e-40
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 3e-40
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 4e-40
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 7e-40
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 9e-40
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 6e-38
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 7e-29
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
 Score =  201 bits (513), Expect = 2e-62
 Identities = 63/133 (47%), Positives = 91/133 (68%), Gaps = 4/133 (3%)

Query: 1   MAATRR---LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVR 57
           MA+ R    L++++ Q  N +C +C   NPQW SV+YG+++CLECSG+HRGLGVH+SFVR
Sbjct: 19  MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVR 78

Query: 58  SVTMDSWSEIQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAE 116
           SVTMD W +I+++KM+AGGN +   FL SQ        +  KYN+ AA+++RD++ A+AE
Sbjct: 79  SVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAE 138

Query: 117 GRPWRDPPVVKET 129
           GR W       + 
Sbjct: 139 GREWSLESSPAQN 151
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 100.0
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
3o47_A329 ADP-ribosylation factor GTPase-activating protein 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.96
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.96
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.95
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.94
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.94
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 82.92
1gnf_A46 Transcription factor GATA-1; zinc finger, transcri 82.7
2vut_I43 AREA, nitrogen regulatory protein AREA; transcript 82.3
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.3e-42  Score=302.96  Aligned_cols=120  Identities=48%  Similarity=0.994  Sum_probs=107.5

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907            3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT   82 (364)
Q Consensus         3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~   82 (364)
                      .+++|++|++.|+|++||||++++|+|||++||||||++|+||||.||+|||+||||+||.|+++||++|+.+||.++|+
T Consensus        25 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~  104 (147)
T 3dwd_A           25 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE  104 (147)
T ss_dssp             HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC-CCCCCCccccccchhHHHHHHHHHHHHcCCCCCC
Q 017907           83 FLSQYG-IPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRD  122 (364)
Q Consensus        83 f~e~~~-~~~e~~I~~KY~s~aa~~yreki~a~~egr~w~~  122 (364)
                      ||++++ .....+|++||++++|.+||++|++++|||+|+.
T Consensus       105 ~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~  145 (147)
T 3dwd_A          105 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL  145 (147)
T ss_dssp             HHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred             HHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence            999874 3456789999999999999999999999999975
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 364
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 3e-35
d1u5ka2157 g.45.1.2 (A:81-237) Recombinational repair protein 0.002
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (310), Expect = 3e-35
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 5   RRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSW 64
             + ++Q   GN +C DC   +P W S + G+  C+ECSG HR LGVH S ++S+T+D  
Sbjct: 4   EIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVL 63

Query: 65  SEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDR-IQAIAEGRPW 120
              ++   +  GN   N  +        ++   K N  +  I R   I A    R +
Sbjct: 64  GTSELLLAKNIGNAGFNEIMECCL---PSEDPVKPNPGSDMIARKDYITAKYMERRY 117
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Length = 157 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 89.13
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-36  Score=253.64  Aligned_cols=117  Identities=30%  Similarity=0.544  Sum_probs=102.2

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHhhccChHHHHH
Q 017907            3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT   82 (364)
Q Consensus         3 a~r~LreL~~~p~Nk~CaDCGa~nP~WaSvn~GIFIC~~CSGiHR~LG~hiS~VKSvtmD~Ws~~eL~~Mk~gGN~~an~   82 (364)
                      ++++|++|++.|+|++||||++++|+|||++||||||++|||+||.||+|||+||||+||.|++++|++|+.+||..+|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCccccccchhHHH-HHHHHHHHHcCCCCCC
Q 017907           83 FLSQYGIPKETDIVTKYNTNAASI-YRDRIQAIAEGRPWRD  122 (364)
Q Consensus        83 f~e~~~~~~e~~I~~KY~s~aa~~-yreki~a~~egr~w~~  122 (364)
                      +|++..++.+ +  .|+....... .+++|+++|+.+.|..
T Consensus        82 ~~ea~~~~~~-~--~kp~~~~~~~~r~~fI~~KY~~k~f~~  119 (122)
T d1dcqa2          82 IMECCLPSED-P--VKPNPGSDMIARKDYITAKYMERRYAR  119 (122)
T ss_dssp             HHTTTCCSSS-C--CSCCTTCCHHHHHHHHHHHHTTCTTSC
T ss_pred             HHHhhCCccc-C--cCCCCCccHHHHHHHHHHHHHhCcccc
Confidence            9997654322 2  2444333333 4567999999999964
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure