Citrus Sinensis ID: 017908

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKKNLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQMGLLTSESRRL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHccccccccEEEccccccEEEEccccHHHHHHHHccccccHHHHHHHHHcccccccccccEEEcccccccccHHHHHHHccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccHcccHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHcccccccccccccccccccccccccccHcHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mssssaangnslppflskiydmvedpstndivswsssnnsFIVWKVAEfsrdllpkyfkhsnfsSFVRQLNtygfrkvdpdryefaneGFLRGQKHLLKSIsrrkpaqvhgqqqpklqnssvgacvevgkygLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINLSTFLidnipsanalenghsssqisgvtlsevppnsgqsnmstesrfhvpssaiseiqcspcvsdsvkvnptqekknldptaldgtmsidadafspdhdvdvspdgihklpridDAFWEEfltasplpgdtdeinssplesgmtseleqqpeqangwdnfqHMDHLTEQMglltsesrrl
Flexible Loop (DISEMBL)
mssssaangnslppFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPaqvhgqqqpklqnssvgaCVEVGKYGLEEEVEILKRDKNVLMQELVRLRqqqqatdrqlHTVGQRVQVMEQRQQQMINLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDsvkvnptqekknldptalDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEqmglltsesrrl
Low Complexity Region (SEG)
MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGqrvqvmeqrqqqmINLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKKNLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQMGLLTSESRRL
Disordered region (IsUnstruct)
***************LSKIYDMVE***TNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHL************************VGACVEVGKYGLEEEVEILKRDKNVLMQELVRL**************************QMINLSTFLIDNI*************************************************************************************************IHKLPRIDDAFWEEFLT*********************************************************
Disordered Region (DISOPRED)
****************SKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLL*************************************************M**LVRLRQ**QA*DRQLHT*G**********************************************************************************************************************************AFWEEFLT*********************************WDNFQHMDHLTEQ***********
Disordered Region (DISEMBL)
*********NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSIS*****************SSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINLSTFLIDNIPSANALENGHSSSQISGVTLS**********************AISEIQCSPCVSDSVKVNPTQEKKNLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSP*************EQANGWDNFQHMDHLTEQMGLLTSESRRL
Disordered Region (DISPRO)
*********NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRR**************************YGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINLSTFLIDNIPSANALENGHSSSQ****************************************************************************************RIDDAFWEEFLTASPL***************************NGWDNFQHMDHLTEQMGLLT******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQATDRQLHTVGQRVQVMEQRQQQMINLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKKNLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQMGLLTSESRRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
Q9SCW5	468	Heat stress transcription	yes	no	0.535	0.416	0.722	2e-75
Q84T61	506	Heat stress transcription	yes	no	0.502	0.361	0.704	2e-75
Q9LQM7	485	Heat stress transcription	no	no	0.585	0.439	0.651	2e-75
Q40152	527	Heat shock factor protein	N/A	no	0.469	0.324	0.732	3e-73
O81821	481	Heat stress transcription	no	no	0.543	0.411	0.701	4e-73
P41151	495	Heat stress transcription	no	no	0.519	0.381	0.67	1e-71
P41153	527	Heat shock factor protein	N/A	no	0.469	0.324	0.715	2e-70
P41152	351	Heat shock factor protein	N/A	no	0.478	0.495	0.594	4e-60
O80982	345	Heat stress transcription	no	no	0.497	0.524	0.585	8e-58
Q6F388	357	Heat stress transcription	no	no	0.478	0.487	0.588	8e-58

>sp|Q9SCW5|HFA1E_ARATH Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2

 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/198 (72%), Positives = 165/198 (83%), Gaps = 3/198 (1%)

Query: 2   SSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHS 61
           + SS A  +S+PPFLSK YDMV+DP T+D+VSWSS NNSF+VW V EF++  LPKYFKH+
Sbjct: 11  AKSSTAVMSSIPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHN 70

Query: 62  NFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSS 121
           NFSSFVRQLNTYGFRKVDPDR+EFANEGFLRGQK +LKSI RRKPAQV   QQP++Q+SS
Sbjct: 71  NFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSS 130

Query: 122 VGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQ 181
           VGACVEVGK+GLEEEVE L+RDKNVLMQELVRLRQQQQ T+  L  VGQ+V VMEQRQQQ
Sbjct: 131 VGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQ 190

Query: 182 MINLSTFLIDNIPSANAL 199
           M+   +FL   + S   L
Sbjct: 191 MM---SFLAKAVQSPGFL 205

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/186 (70%), Positives = 157/186 (84%), Gaps = 3/186 (1%)

Query: 3   SSSAANG--NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKH 60
            ++ +NG   + PPFL K Y+MV+DP+T+ +VSW   NNSF+VW   EF+RDLLPKYFKH
Sbjct: 24  GAAVSNGVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKH 83

Query: 61  SNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ-QQPKLQN 119
           SNFSSFVRQLNTYGFRKVDPDR+EFANEGFLRGQKHLLK+I+RRKP   + Q QQP+L  
Sbjct: 84  SNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPA 143

Query: 120 SSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQ 179
           + V ACVEVGK+G+EEE+E+LKRDKNVLMQELVRLRQQQQ TD QL T+G+R+Q MEQRQ
Sbjct: 144 APVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQ 203

Query: 180 QQMINL 185
           QQM++ 
Sbjct: 204 QQMMSF 209

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2

 Score =  282 bits (722), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/227 (65%), Positives = 172/227 (75%), Gaps = 14/227 (6%)

Query: 10  NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQ 69
           N+ PPFLSK YDMV+D +T+ IVSWS++NNSFIVWK  EF+RDLLPK FKH+NFSSFVRQ
Sbjct: 33  NAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQ 92

Query: 70  LNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ-----QQPKLQNSSVGA 124
           LNTYGFRKVDPDR+EFANEGFLRGQKHLL+SI+RRKPA   GQ     Q    QNSSV A
Sbjct: 93  LNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSA 152

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMIN 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ+TD QL T+ QR+Q ME RQQQ++ 
Sbjct: 153 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLM- 211

Query: 185 LSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRF 231
             +FL      A A+++ H  SQ       +   N   S+ S + RF
Sbjct: 212 --SFL------AKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRF 250

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score =  275 bits (704), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/183 (73%), Positives = 149/183 (81%), Gaps = 12/183 (6%)

Query: 15  FLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYG 74
           FL K YDMV+DPST+ IVSWS +NNSF+VW   EF++DLLPKYFKH+NFSSFVRQLNTYG
Sbjct: 40  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 99

Query: 75  FRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHG------------QQQPKLQNSSV 122
           FRKVDPDR+EFANEGFLRGQKHLLKSISRRKPA  H             Q QP   ++SV
Sbjct: 100 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASV 159

Query: 123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182
           GACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQATD QL  + QR+Q ME RQQQM
Sbjct: 160 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQM 219

Query: 183 INL 185
           ++ 
Sbjct: 220 MSF 222

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum lycopersicum (taxid: 4081)

>sp|O81821|HFA1B_ARATH Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2

 Score =  275 bits (703), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/208 (70%), Positives = 167/208 (80%), Gaps = 10/208 (4%)

Query: 10  NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQ 69
           NS+PPFLSK YDMV+DP TN++VSWSS NNSF+VW   EFS+ LLPKYFKH+NFSSFVRQ
Sbjct: 23  NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query: 70  LNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQ-VHGQQQPKLQNSSVGACVEV 128
           LNTYGFRKVDPDR+EFANEGFLRG+K LLKSI RRKP+     QQQ ++Q+SSVGACVEV
Sbjct: 83  LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query: 129 GKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINLSTF 188
           GK+G+EEEVE LKRDKNVLMQELVRLRQQQQAT+ QL  VGQ+VQVMEQRQQQM+   +F
Sbjct: 143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMM---SF 199

Query: 189 LIDNIPSANAL------ENGHSSSQISG 210
           L   + S   L       N   + QI G
Sbjct: 200 LAKAVQSPGFLNQLVQQNNNDGNRQIPG 227

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score =  270 bits (690), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 156/200 (78%), Gaps = 11/200 (5%)

Query: 4   SSAANGNSLPP-FLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSN 62
           ++  N NSLPP FLSK YDMVEDP+T+ IVSWS +NNSFIVW   EFSRDLLPKYFKH+N
Sbjct: 41  ATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNN 100

Query: 63  FSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQN--- 119
           FSSFVRQLNTYGFRKVDPDR+EFANEGFLRGQKHLLK ISRRK  Q HG      Q+   
Sbjct: 101 FSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQL 160

Query: 120 -------SSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172
                  +++ +CVEVGK+GLEEEVE LKRDKNVLMQELV+LRQQQQ TD +L  + + +
Sbjct: 161 SQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHL 220

Query: 173 QVMEQRQQQMINLSTFLIDN 192
           QVMEQRQQQ+++     + N
Sbjct: 221 QVMEQRQQQIMSFLAKAVQN 240

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|P41153|HSF8_SOLPE Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1

 Score =  266 bits (680), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/183 (71%), Positives = 147/183 (80%), Gaps = 12/183 (6%)

Query: 15  FLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYG 74
           FL K YDMV+DPST+ IVSWS +NNSF+VW   EF++DLLPKYFKH+NFSSFVRQLNTYG
Sbjct: 42  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 101

Query: 75  FRKVDPDRYEFANEGFLRGQKHLLKSISRRKP------------AQVHGQQQPKLQNSSV 122
           FRKVDPDR+EFANEGFLRGQKHLLKSISRRKP                 Q QP   ++SV
Sbjct: 102 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASV 161

Query: 123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182
           GACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ+TD QL  + QR+Q ME RQQQM
Sbjct: 162 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQRLQGMELRQQQM 221

Query: 183 INL 185
           ++ 
Sbjct: 222 MSF 224

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1

 Score =  232 bits (591), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/180 (59%), Positives = 138/180 (76%), Gaps = 6/180 (3%)

Query: 13  PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
           PPFLSK Y+MVED ST+ ++SWS++ NSFIVW   +FS  LLP++FKHSNFSSF+RQLNT
Sbjct: 30  PPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNT 89

Query: 73  YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYG 132
           YGFRKVDPDR+EFANEGFL GQKHLLK+I RR+       QQ        GAC+E+G YG
Sbjct: 90  YGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMNQQ------GSGACIEIGYYG 143

Query: 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINLSTFLIDN 192
           +EEE+E LKRDKNVLM E+V+LRQQQQ+T  Q+  +G++++  E++Q QM++    +  N
Sbjct: 144 MEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMMSFLAKIFSN 203

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|O80982|HSFA2_ARATH Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1

 Score =  224 bits (571), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 141/188 (75%), Gaps = 7/188 (3%)

Query: 13  PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
           PPFL+K Y+MVEDP+T+ +VSWS+  NSF+VW   +FS  LLP+YFKHSNFSSF+RQLNT
Sbjct: 43  PPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNT 102

Query: 73  YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYG 132
           YGFRK+DPDR+EFANEGFL GQKHLLK+I RR+     G Q    Q S + +CVEVG+YG
Sbjct: 103 YGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNM---GLQNVNQQGSGM-SCVEVGQYG 158

Query: 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINLSTFLIDN 192
            + EVE LKRD  VL+ E+VRLRQQQ ++  Q+  + QR+ V E+RQQQM+   TFL   
Sbjct: 159 FDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMM---TFLAKA 215

Query: 193 IPSANALE 200
           + + N ++
Sbjct: 216 LNNPNFVQ 223

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress responses. Seems to be involved in other environmental stress responses. Activates ascorbate peroxidase 2 (APX2) in addition to several heat shock protein (HSPs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score =  224 bits (571), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 137/180 (76%), Gaps = 6/180 (3%)

Query: 13  PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
           PPFL+K YDMV+DP+T+ +VSWS++NNSF+VW    F   LLP+YFKH+NFSSFVRQLNT
Sbjct: 37  PPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNT 96

Query: 73  YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYG 132
           YGFRKVDPD++EFANEGFLRGQKHLLKSI RRKP      QQ      S+G+ +EVG +G
Sbjct: 97  YGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQ------SLGSFLEVGHFG 150

Query: 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINLSTFLIDN 192
            E E++ LKRDK++LM E+V+LRQ+QQ T   L  + Q++Q  EQ+QQ M+   + ++ N
Sbjct: 151 YEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFLSRVMHN 210

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
255573449	510	Heat shock factor protein HSF8, putative	0.483	0.345	0.787	3e-78
224138180	484	predicted protein [Populus trichocarpa]	0.494	0.371	0.770	3e-78
351722667	510	heat shock factor protein hsf8-related [	0.489	0.349	0.783	4e-78
359474544	496	PREDICTED: heat shock factor protein HSF	0.747	0.548	0.559	6e-78
147767343	495	hypothetical protein VITISV_017888 [Viti	0.489	0.359	0.779	9e-78
224071375	481	predicted protein [Populus trichocarpa]	0.494	0.374	0.765	2e-77
347369340	482	heat shock transcription factor [Populus	0.494	0.373	0.759	6e-77
357485115	502	Heat stress transcription factor A-1d [M	0.489	0.354	0.779	7e-76
115521213	502	heat shock transcription factor 1 [Medic	0.489	0.354	0.779	1e-75
115521217	561	heat shock transcription factor 1 varian	0.489	0.317	0.779	1e-75

>gi|255573449|ref|XP_002527650.1| Heat shock factor protein HSF8, putative [Ricinus communis] gi|223532955|gb|EEF34721.1| Heat shock factor protein HSF8, putative [Ricinus communis]

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 141/179 (78%), Positives = 157/179 (87%), Gaps = 3/179 (1%)

Query: 10  NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQ 69
           N+ PPFLSK YDMV+DP+T+ +VSWS +NNSF+VW   EF+RDLLPKYFKH+NFSSFVRQ
Sbjct: 37  NAPPPFLSKTYDMVDDPATDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQ 96

Query: 70  LNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ---QQPKLQNSSVGACV 126
           LNTYGFRKVDPDR+EFANEGFLRGQKHLLKSISRRKPA  HG    QQP  Q+SSVGACV
Sbjct: 97  LNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHGHQQAQQPHGQSSSVGACV 156

Query: 127 EVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINL 185
           EVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQM++ 
Sbjct: 157 EVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQRLQGMEQRQQQMMSF 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138180|ref|XP_002326538.1| predicted protein [Populus trichocarpa] gi|222833860|gb|EEE72337.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 141/183 (77%), Positives = 160/183 (87%), Gaps = 3/183 (1%)

Query: 6   AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSS 65
           A+  NS PPFLSK YDMV+DP T+ +VSWSS+NNSF+VW   EF+RDLLPKYFKH+NFSS
Sbjct: 2   ASQSNSPPPFLSKTYDMVDDPETDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSS 61

Query: 66  FVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQP---KLQNSSV 122
           FVRQLNTYGFRKVDPDR+EFANEGFLRGQKHLL++ISRRKPA  H  QQP   + QNS+V
Sbjct: 62  FVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRTISRRKPAHGHTNQQPQQARGQNSTV 121

Query: 123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182
           GACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ+TD QL T+ QR+Q MEQRQQQM
Sbjct: 122 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDSQLQTMVQRLQGMEQRQQQM 181

Query: 183 INL 185
           ++ 
Sbjct: 182 MSF 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722667|ref|NP_001236740.1| heat shock factor protein hsf8-related [Glycine max] gi|42415865|gb|AAS15800.1| heat shock factor protein hsf8-related [Glycine max]

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 141/180 (78%), Positives = 159/180 (88%), Gaps = 2/180 (1%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N+ PPFLSK Y+MVEDPST+ IVSWS +NNSF+VW   EF+RDLLPK+FKH+NFSSFV
Sbjct: 24  NANAPPPFLSKTYEMVEDPSTDSIVSWSPTNNSFVVWNPPEFARDLLPKHFKHNNFSSFV 83

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ--QQPKLQNSSVGAC 125
           RQLNTYGFRKVDPDR+EFANEGFLRGQKHLLK+I+RRKPA  H Q  QQ   Q+SSVGAC
Sbjct: 84  RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTITRRKPAHGHNQQAQQAHGQSSSVGAC 143

Query: 126 VEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMINL 185
           VEVGK+GLEEEVEILKRDKNVLMQELVRLRQQQQATD QL ++ QR+Q MEQRQQQM++ 
Sbjct: 144 VEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQATDNQLQSMVQRLQGMEQRQQQMMSF 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474544|ref|XP_003631489.1| PREDICTED: heat shock factor protein HSF8-like [Vitis vinifera]

 Score =  297 bits (760), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 165/295 (55%), Positives = 193/295 (65%), Gaps = 23/295 (7%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N+ PPFLSK YDMV+DP+TN IVSWS +NNSF+VW   EF+RDLLPKYFKH+NFSSFV
Sbjct: 28  NSNAPPPFLSKTYDMVDDPATNSIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFV 87

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKL---QNSSVGA 124
           RQLNTYGFRKVDPDR+EFANEGFLRGQKHLL+SI+RRKPA  H  QQP+    Q SSVGA
Sbjct: 88  RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSINRRKPAHGHNLQQPQQSHSQGSSVGA 147

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMIN 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQM+ 
Sbjct: 148 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMM- 206

Query: 185 LSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCS 244
             +FL   + S   L         S   ++E          + + R     +A  E   +
Sbjct: 207 --SFLAKAVQSPGFLAQFVQQQNESNRRITEA---------NKKRRLKREDTAEGEHSAA 255

Query: 245 PCVSDSVKVNPTQEKKNLDPTALDGTMSIDADAFSPDH------DVDVSPDGIHK 293
           P     VK  P   +       L   + +D  AFS D       DV  S +G+ K
Sbjct: 256 PSDGQIVKYQPLMNEAT--KAMLRQMVKMDTSAFSNDSDNFLIGDVSSSSNGVEK 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767343|emb|CAN71266.1| hypothetical protein VITISV_017888 [Vitis vinifera]

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 141/181 (77%), Positives = 157/181 (86%), Gaps = 3/181 (1%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N+ PPFLSK YDMV+DP+TN IVSWS +NNSF+VW   EF+RDLLPKYFKH+NFSSFV
Sbjct: 27  NSNAPPPFLSKTYDMVDDPATNSIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFV 86

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKL---QNSSVGA 124
           RQLNTYGFRKVDPDR+EFANEGFLRGQKHLL+SI+RRKPA  H  QQP+    Q SSVGA
Sbjct: 87  RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSINRRKPAHGHNLQQPQQSHSQGSSVGA 146

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMIN 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQM++
Sbjct: 147 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMS 206

Query: 185 L 185
            
Sbjct: 207 F 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071375|ref|XP_002303429.1| predicted protein [Populus trichocarpa] gi|222840861|gb|EEE78408.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 140/183 (76%), Positives = 159/183 (86%), Gaps = 3/183 (1%)

Query: 6   AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSS 65
           A+  N+ PPFLSK YDMV+DP+T+ +VSWSS+NNSF+VW   EF+RDLLPKYFKH+NFSS
Sbjct: 2   ASQSNAPPPFLSKTYDMVDDPATDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSS 61

Query: 66  FVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKL---QNSSV 122
           FVRQLNTYGFRKVDPDR+EFANEGFLRGQKHLL+ ISRRKPA  H  QQP+    QNSSV
Sbjct: 62  FVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRIISRRKPAHGHANQQPQQPHGQNSSV 121

Query: 123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182
            ACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ+TD QL T+ QR+Q MEQRQQQM
Sbjct: 122 AACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDSQLQTMVQRLQGMEQRQQQM 181

Query: 183 INL 185
           ++ 
Sbjct: 182 MSF 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347369340|gb|AEO91550.1| heat shock transcription factor [Populus simonii]

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 139/183 (75%), Positives = 159/183 (86%), Gaps = 3/183 (1%)

Query: 6   AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSS 65
           A+  N+ PPFLSK YDMV+DP+T+ +VSWSS+NNSF+VW   EF+RDLLPKYFKH+NFSS
Sbjct: 2   ASQSNAPPPFLSKTYDMVDDPATDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSS 61

Query: 66  FVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKL---QNSSV 122
           FVRQLNTYGFRKVDPDR+EFANEGFLRGQKHLL+ ISRRKPA  H  QQP+    QNSSV
Sbjct: 62  FVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRIISRRKPAHGHANQQPQQPHGQNSSV 121

Query: 123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182
            ACVEVGK+GL+EEVE LKRDKNVLMQELVRLRQQQQ+TD QL T+ QR+Q MEQRQQQM
Sbjct: 122 AACVEVGKFGLKEEVERLKRDKNVLMQELVRLRQQQQSTDSQLQTMVQRLQGMEQRQQQM 181

Query: 183 INL 185
           ++ 
Sbjct: 182 MSF 184

Source: Populus simonii

Species: Populus simonii

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485115|ref|XP_003612845.1| Heat stress transcription factor A-1d [Medicago truncatula] gi|355514180|gb|AES95803.1| Heat stress transcription factor A-1d [Medicago truncatula]

 Score =  290 bits (742), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 141/181 (77%), Positives = 157/181 (86%), Gaps = 3/181 (1%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N+ PPFLSK YDMV+DPST+ IVSWS++NNSF+VW   EF+RDLLPK+FKH+NFSSFV
Sbjct: 26  NANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKFFKHNNFSSFV 85

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVH---GQQQPKLQNSSVGA 124
           RQLNTYGFRKVDPDR+EFANEGFLRGQK LLKSISRRKPA  H     QQP  Q+SSVGA
Sbjct: 86  RQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQQAQQPHGQSSSVGA 145

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMIN 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQM++
Sbjct: 146 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQRLQGMEQRQQQMMS 205

Query: 185 L 185
            
Sbjct: 206 F 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115521213|gb|ABJ09072.1| heat shock transcription factor 1 [Medicago sativa] gi|115521219|gb|ABJ09075.1| heat shock transcription factor 1 [Medicago sativa]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/181 (77%), Positives = 157/181 (86%), Gaps = 3/181 (1%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N+ PPFLSK YDMV+DPST+ IVSWS++NNSF+VW   EF+RDLLPK+FKH+NFSSFV
Sbjct: 26  NANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKFFKHNNFSSFV 85

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVH---GQQQPKLQNSSVGA 124
           RQLNTYGFRKVDPDR+EFANEGFLRGQK LLKSISRRKPA  H     QQP  Q+SSVGA
Sbjct: 86  RQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQQAQQPHGQSSSVGA 145

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMIN 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQM++
Sbjct: 146 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDGQLQTMVQRLQGMEQRQQQMMS 205

Query: 185 L 185
            
Sbjct: 206 F 206

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115521217|gb|ABJ09074.1| heat shock transcription factor 1 variant c [Medicago sativa]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/181 (77%), Positives = 157/181 (86%), Gaps = 3/181 (1%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N+ PPFLSK YDMV+DPST+ IVSWS++NNSF+VW   EF+RDLLPK+FKH+NFSSFV
Sbjct: 26  NANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKFFKHNNFSSFV 85

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVH---GQQQPKLQNSSVGA 124
           RQLNTYGFRKVDPDR+EFANEGFLRGQK LLKSISRRKPA  H     QQP  Q+SSVGA
Sbjct: 86  RQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQQAQQPHGQSSSVGA 145

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMIN 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQM++
Sbjct: 146 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDGQLQTMVQRLQGMEQRQQQMMS 205

Query: 185 L 185
            
Sbjct: 206 F 206

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.442	0.331	0.765	7.5e-78
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.442	0.325	0.738	3.2e-73
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.461	0.358	0.761	1.7e-66
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.895	0.677	0.455	1.2e-65
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.423	0.446	0.620	3.7e-52
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.420	0.376	0.673	4e-51
TAIR|locus:2117139	401	HSF A4A "AT4G18880" [Arabidops	0.439	0.399	0.490	2.9e-48
TAIR|locus:2129276	466	AT-HSFA5 "AT4G13980" [Arabidop	0.752	0.587	0.371	8.6e-47
TAIR|locus:2200171	374	HSFA8 "AT1G67970" [Arabidopsis	0.431	0.419	0.558	8.6e-45
TAIR|locus:2172003	345	RHA1 "AT5G45710" [Arabidopsis	0.912	0.962	0.331	4.5e-43

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 127/166 (76%), Positives = 142/166 (85%)

Query:     8 NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
             + N+ PPFLSK YDMV+D +T+ IVSWS++NNSFIVWK  EF+RDLLPK FKH+NFSSFV
Sbjct:    31 SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFV 90

Query:    68 RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ-----QQPKLQNSSV 122
             RQLNTYGFRKVDPDR+EFANEGFLRGQKHLL+SI+RRKPA   GQ     Q    QNSSV
Sbjct:    91 RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSV 150

Query:   123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168
              ACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ+TD QL T+
Sbjct:   151 SACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTM 196

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
 Identities = 127/172 (73%), Positives = 138/172 (80%)

Query:     8 NGNSLPP-FLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSF 66
             N NSLPP FLSK YDMVEDP+T+ IVSWS +NNSFIVW   EFSRDLLPKYFKH+NFSSF
Sbjct:    45 NANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSF 104

Query:    67 VRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQ--PKLQNSSVG- 123
             VRQLNTYGFRKVDPDR+EFANEGFLRGQKHLLK ISRRK  Q HG     P+ Q  S G 
Sbjct:   105 VRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQ 164

Query:   124 -------ACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168
                    +CVEVGK+GLEEEVE LKRDKNVLMQELV+LRQQQQ TD +L  +
Sbjct:   165 GSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVL 216

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 128/168 (76%), Positives = 146/168 (86%)

Query:     2 SSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHS 61
             + SS A  +S+PPFLSK YDMV+DP T+D+VSWSS NNSF+VW V EF++  LPKYFKH+
Sbjct:    11 AKSSTAVMSSIPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHN 70

Query:    62 NFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSS 121
             NFSSFVRQLNTYGFRKVDPDR+EFANEGFLRGQK +LKSI RRKPAQV   QQP++Q+SS
Sbjct:    71 NFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSS 130

Query:   122 VGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169
             VGACVEVGK+GLEEEVE L+RDKNVLMQELVRLRQQQQ T+  L  VG
Sbjct:   131 VGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVG 178

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 158/347 (45%), Positives = 209/347 (60%)

Query:    10 NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQ 69
             NS+PPFLSK YDMV+DP TN++VSWSS NNSF+VW   EFS+ LLPKYFKH+NFSSFVRQ
Sbjct:    23 NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query:    70 LNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVH-GQQQPKLQNSSVGACVEV 128
             LNTYGFRKVDPDR+EFANEGFLRG+K LLKSI RRKP+ V   QQQ ++Q+SSVGACVEV
Sbjct:    83 LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query:   129 GKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXXXINLSTF 188
             GK+G+EEEVE LKRDKNVLMQELVRLRQQQQAT+ QL  VG             ++    
Sbjct:   143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAK 202

Query:   189 LIDNIPSANAL---ENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEI-QCS 244
              + +    N L    N   + QI G       P   Q N       +V +    +I +  
Sbjct:   203 AVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGD----NVANGLNRQIVRYQ 258

Query:   245 PCVSDSVKVNPTQEKKNLDPTALDGTMSIDADAFS-PDHDVDVSPDGIHKLPRIDDAFWE 303
             P ++++ + N  ++  N   +    ++S + D+F   D     S D  +   R+      
Sbjct:   259 PSINEAAQ-NMLRQFLNTSTSPRYESVSNNPDSFLLGDVPSSTSVDNGNPSSRVSGVTLA 317

Query:   304 EFLTASPLPGDTDEINSSPL----ESGMTS-ELEQQPEQ----ANGW 341
             EF + + +   T+++  + L    ++G+    + Q P Q    A+ W
Sbjct:   318 EF-SPNTVQSATNQVPEASLAHHPQAGLVQPNIGQSPAQGAAPADSW 363

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
 Identities = 98/158 (62%), Positives = 121/158 (76%)

Query:     8 NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
             N    PPFL+K Y+MVEDP+T+ +VSWS+  NSF+VW   +FS  LLP+YFKHSNFSSF+
Sbjct:    38 NETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFI 97

Query:    68 RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVE 127
             RQLNTYGFRK+DPDR+EFANEGFL GQKHLLK+I RR+     G Q    Q S + +CVE
Sbjct:    98 RQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNM---GLQNVNQQGSGM-SCVE 153

Query:   128 VGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQL 165
             VG+YG + EVE LKRD  VL+ E+VRLRQQQ ++  Q+
Sbjct:   154 VGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQV 191

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 105/156 (67%), Positives = 123/156 (78%)

Query:    13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
             PPFL+K YD+VED  TN +VSWS SNNSFIVW    FS  LLP++FKH+NFSSFVRQLNT
Sbjct:    60 PPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNT 119

Query:    73 YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ-QQPKL--QNSSVGACVEVG 129
             YGFRKV+PDR+EFANEGFLRGQKHLLK+I RRK +    Q QQP+   Q S    C+EVG
Sbjct:   120 YGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVG 179

Query:   130 KYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQL 165
             +YGL+ E++ L+RDK VLM ELVRLRQQQQ+T   L
Sbjct:   180 RYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYL 215

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 80/163 (49%), Positives = 118/163 (72%)

Query:     3 SSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSN 62
             ++   + +SLPPFL+K Y+MV+D S++ IVSWS SN SFIVW   EFSRDLLP++FKH+N
Sbjct:     4 NNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNN 63

Query:    63 FSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSV 122
             FSSF+RQLNTYGFRK DP+++EFAN+ F+RGQ HL+K+I RRKP  VH    P LQ + +
Sbjct:    64 FSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKP--VHSHSLPNLQ-AQL 120

Query:   123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQL 165
                 +  +  +  ++E L ++K  L++EL +  ++++  + Q+
Sbjct:   121 NPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQV 163

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129276 AT-HSFA5 "AT4G13980" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 110/296 (37%), Positives = 159/296 (53%)

Query:     2 SSSSAANGNSL--P-PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYF 58
             SS+S + G     P PFL K Y+MV+D ST+ IVSWS++NNSFIVW  AEFSR LLP YF
Sbjct:     8 SSASVSGGEGAGGPAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYF 67

Query:    59 KHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQ 118
             KH+NFSSF+RQLNTYGFRK+DP+R+EF N+ F++ QKHLLK+I RRKP  +H    P   
Sbjct:    68 KHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKP--IHSHSHPPAS 125

Query:   119 NSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXX 178
             ++     V      L+E+++ L R+K  +  +L++ +QQ+     Q   +          
Sbjct:   126 STDQERAV------LQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENR 179

Query:   179 XXXXINLSTFLIDNIPSANALEN-GHSSSQ--ISGVTLSEVPPNSGQSNMSTESRFHVPS 235
                 +N   FL   I +   ++N G    Q  IS        P   QS   +E   H+ +
Sbjct:   180 QKKLLN---FLETAIRNPTFVKNFGKKVEQLDISAYNKKRRLPEVEQSKPPSEDS-HLDN 235

Query:   236 SAISEIQCSPCVSDSVKVNPTQEKKNLDPTALDGTMSIDADAFSPDHDVDVSPDGI 291
             S+ S    S   S ++       K  L+ +  D  M++ + +    ++   SP GI
Sbjct:   236 SSGS----SRRESGNIFHQNFSNKLRLELSPADSDMNMVSHSIQSSNEEGASPKGI 287

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2200171 HSFA8 "AT1G67970" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 8.6e-45, Sum P(2) = 8.6e-45
 Identities = 91/163 (55%), Positives = 121/163 (74%)

Query:     6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWS-SSNNSFIVWKVAEFSRDLLPKYFKHSNFS 64
             +++ +S+ PFL K YDMV+D +T+ I+SWS S++NSF++     FS  LLPKYFKHSNFS
Sbjct:    11 SSSSSSVAPFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFS 70

Query:    65 SFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGA 124
             SF+RQLN YGFRKVD DR+EFAN+GF+RGQK LLK++ RRK   V   +Q K +++S   
Sbjct:    71 SFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRK--NVQSSEQSKHESTSTTY 128

Query:   125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATD-RQLH 166
               E  K GL +EV+ILK DK VL QEL+++RQ Q+ TD + LH
Sbjct:   129 AQE--KSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLH 169

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2172003 RHA1 "AT5G45710" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 117/353 (33%), Positives = 193/353 (54%)

Query:     8 NG--NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSS 65
             NG  +SLPPFL+K Y+MV+D S++ +V+WS +N SFIV   AEFSRDLLP++FKH NFSS
Sbjct:     5 NGGSSSLPPFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSS 64

Query:    66 FVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGAC 125
             F+RQLNTYGFRKVDP+++EF N+ F+RG+ +L+K+I RRKP   H     + QN      
Sbjct:    65 FIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQNP----L 120

Query:   126 VEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXXXINL 185
              E  +  +E+++E LK +K  L+ EL    Q+++  + Q+ T+              +  
Sbjct:   121 TESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIVAY 180

Query:   186 STFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSP 245
              + ++     +  LEN H   +      + +PP+S  S++    +     S+++  +   
Sbjct:   181 VSQVLGKPGLSLNLEN-HERRK-RRFQENSLPPSS--SHIEQVEKLE---SSLTFWE--N 231

Query:   246 CVSDSVKVNPTQEKKNLDPTALDGTMSI-DADAFSPDHDVDVSPDGIHKLPR----IDDA 300
              VS+S + +  Q   ++D  A + ++SI D    S   D++  P      P     ++D 
Sbjct:   232 LVSESCEKSGLQSS-SMDHDAAESSLSIGDTRPKSSKIDMNSEPPVTVTAPAPKTGVNDD 290

Query:   301 FWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQ 353
             FWE+ LT +P   +  E+ S   + G  +   +   Q   W N  +++++TE+
Sbjct:   291 FWEQCLTENPGSTEQQEVQSERRDVGNDNNGNKIGNQRTYWWNSGNVNNITEK 343

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048530 "fruit morphogenesis" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SCW5	HFA1E_ARATH	No assigned EC number	0.7222	0.5357	0.4166	yes	no
Q84T61	HSFA1_ORYSJ	No assigned EC number	0.7043	0.5027	0.3616	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_29000103 hypothetical protein (484 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	364
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	7e-53
smart00415	105	smart00415, HSF, heat shock factor	2e-49
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	8e-27

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  169 bits (431), Expect = 7e-53
 Identities = 59/95 (62%), Positives = 72/95 (75%), Gaps = 2/95 (2%)

Query: 14  PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTY 73
           PFL K+Y+++EDPS +DI+SWS   NSFI+W   EF++ +LPKYFKH+NFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 74  GFRKVDPDR--YEFANEGFLRGQKHLLKSISRRKP 106
           GF KV  DR  +EFA+  F RGQK LL  I RRK 
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKS 95

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  161 bits (409), Expect = 2e-49
 Identities = 60/105 (57%), Positives = 78/105 (74%), Gaps = 11/105 (10%)

Query: 11  SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQL 70
             PPFL+K+Y +VEDPST+ I+SWS S  SF++W   EF+++LLP+YFKH+NFSSFVRQL
Sbjct: 1   QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 71  NTYGFRKVDP-----------DRYEFANEGFLRGQKHLLKSISRR 104
           N YGFRKVDP           D++EFAN  F+RGQ  LL++I R+
Sbjct: 61  NMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  107 bits (268), Expect = 8e-27
 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 15/204 (7%)

Query: 3   SSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSN 62
            S ++  +    F+ K+Y ++E+P    ++ WS    SF++    EF++ +LP+YFKH N
Sbjct: 1   MSMSSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGN 60

Query: 63  FSSFVRQLNTYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRRK-PAQVH- 110
           F+SFVRQLN YGF KV          + + +EF N+ F  G   LLK I R+K P+    
Sbjct: 61  FASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVD 120

Query: 111 --GQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168
              + +  + N  V   + + +  L   +  L      L+  L  L++      R +  +
Sbjct: 121 SNNESKDAMMNIEVE-NIILPQSELYNSLSSLSNVNQTLLLYLNELKEYNYRNLRTIDDI 179

Query: 169 GQRVQVMEQRQQQMINLSTFLIDN 192
              +  +        +L +FL + 
Sbjct: 180 NAMLADLSMSPFADEHLKSFLQEL 203

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
smart00415	105	HSF heat shock factor.	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.98
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	95.82
smart00413	87	ETS erythroblast transformation specific domain. v	93.53
KOG3806	177	consensus Predicted transcription factor [Transcri	90.1
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	87.55
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	83.1
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	81.08

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=3.7e-44  Score=346.16  Aligned_cols=180  Identities=49%  Similarity=0.797  Sum_probs=160.1

Q ss_pred             CCCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeC--CCc
Q 017908            5 SAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD--PDR   82 (364)
Q Consensus         5 s~~~~~~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~--~d~   82 (364)
                      +++....+++|+.|||.||+||++++||+|+++|++|||||+.+|++.+||+||||+||+|||||||+|||||+.  +++
T Consensus         5 ~~~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~   84 (304)
T KOG0627|consen    5 GLSEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDR   84 (304)
T ss_pred             CccccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCc
Confidence            344556899999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             ceecCCCcccCCcccchhhhccCCCcccCCC--Ccccc--cCCCcchhhccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908           83 YEFANEGFLRGQKHLLKSISRRKPAQVHGQQ--QPKLQ--NSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQ  158 (364)
Q Consensus        83 ~eF~H~~F~Rg~~~LL~~IkRkk~~~~~~~~--q~~~~--~ss~~a~~evg~~~LeeEve~LKrD~~~L~qELv~LRQqQ  158 (364)
                      |||+|++|+||+++||++|+||++..+....  .++..  ......++...+..+++++.+|+++++.|++|+++||+++
T Consensus        85 wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~  164 (304)
T KOG0627|consen   85 WEFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQ  164 (304)
T ss_pred             eeecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999999999999999998776531  11111  1112234556677899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017908          159 QATDRQLHTVGQRVQVMEQRQQQMIN  184 (364)
Q Consensus       159 q~~~~qLq~L~qrLq~mEqRQqqmms  184 (364)
                      +.++++++.+.+++..+++||+++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (304)
T KOG0627|consen  165 DALRATIQTSKRVVKSKETRNSLILS  190 (304)
T ss_pred             HHHHHHHHhhccccCchhhHHHHHhh
Confidence            99999999999999999999999976

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=3.6e-35  Score=243.36  Aligned_cols=93  Identities=58%  Similarity=1.035  Sum_probs=81.5

Q ss_pred             cHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeCCC---------cce
Q 017908           14 PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPD---------RYE   84 (364)
Q Consensus        14 ~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~~d---------~~e   84 (364)
                      +||.|||+||+|++++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+...         .|+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            59999999999999999999999999999999999999999999999999999999999999999643         399


Q ss_pred             ecCCCcccCCcccchhhhccCC
Q 017908           85 FANEGFLRGQKHLLKSISRRKP  106 (364)
Q Consensus        85 F~H~~F~Rg~~~LL~~IkRkk~  106 (364)
                      |+|++|+||++++|..|+|+++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999875

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=100.00  E-value=7.7e-35  Score=243.29  Aligned_cols=94  Identities=64%  Similarity=1.204  Sum_probs=90.7

Q ss_pred             CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeCC----------
Q 017908           11 SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDP----------   80 (364)
Q Consensus        11 ~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~~----------   80 (364)
                      .+|.|+.|||+||+|+++++||+|+++|++|+|+|+..|++.|||+||+|+||+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999865          


Q ss_pred             -CcceecCCCcccCCcccchhhhcc
Q 017908           81 -DRYEFANEGFLRGQKHLLKSISRR  104 (364)
Q Consensus        81 -d~~eF~H~~F~Rg~~~LL~~IkRk  104 (364)
                       +.|+|+|++|+||+++||..|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             689999999999999999999986

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.98  E-value=5.5e-33  Score=267.90  Aligned_cols=104  Identities=40%  Similarity=0.791  Sum_probs=95.6

Q ss_pred             CCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeC-C----
Q 017908            6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD-P----   80 (364)
Q Consensus         6 ~~~~~~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~-~----   80 (364)
                      +.....++.|+.|||.||++|++.++|+|+++|++|||+|++.|.+.|||+||||+||+|||||||+|||+||. .    
T Consensus         4 s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~   83 (282)
T COG5169           4 SSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQR   83 (282)
T ss_pred             CcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccc
Confidence            45566778999999999999999999999999999999999999999999999999999999999999999996 2    


Q ss_pred             -----CcceecCCCcccCCcccchhhhccCCCcc
Q 017908           81 -----DRYEFANEGFLRGQKHLLKSISRRKPAQV  109 (364)
Q Consensus        81 -----d~~eF~H~~F~Rg~~~LL~~IkRkk~~~~  109 (364)
                           +.|||.|++|++|..++|++|+|+|....
T Consensus        84 ~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~  117 (282)
T COG5169          84 SYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSN  117 (282)
T ss_pred             cccchhheeecCchhccCcHHHHHHhhhhhcCcc
Confidence                 24999999999999999999999765443

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=95.82  E-value=0.0042  Score=50.96  Aligned_cols=71  Identities=24%  Similarity=0.412  Sum_probs=51.7

Q ss_pred             HHHHHHHhccCCCCCCceEEcC-CCCeEEEecCchhhhhhc-ccccCCCChhhHhhhhccCce----eeeCCCccee
Q 017908           15 FLSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLL-PKYFKHSNFSSFVRQLNTYGF----RKVDPDRYEF   85 (364)
Q Consensus        15 Fl~KLy~mLed~~~~~IIsWs~-~G~SFvI~d~~~F~k~VL-P~yFkhsnfsSFvRQLN~YGF----rKv~~d~~eF   85 (364)
                      +..=|.++|+|+++.++|+|.. .+.-|.|.|+.++++--- -+--...+|.++-|-|..|.=    .|+...+..|
T Consensus         4 Lw~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y   80 (85)
T PF00178_consen    4 LWQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY   80 (85)
T ss_dssp             HHHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred             HHHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence            3445788999999999999999 999999999999986421 122345689999999987632    4455454444

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=93.53  E-value=0.083  Score=43.80  Aligned_cols=58  Identities=24%  Similarity=0.402  Sum_probs=45.0

Q ss_pred             HHHHHhccCCCCCCceEEcC-CCCeEEEecCchhhhhhc-ccccCCCChhhHhhhhccCc
Q 017908           17 SKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLL-PKYFKHSNFSSFVRQLNTYG   74 (364)
Q Consensus        17 ~KLy~mLed~~~~~IIsWs~-~G~SFvI~d~~~F~k~VL-P~yFkhsnfsSFvRQLN~YG   74 (364)
                      .=|.++|.||++.++|+|.. ++.-|.+.|+.+.++--= -+-=...||...-|-|..|-
T Consensus         6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy   65 (87)
T smart00413        6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY   65 (87)
T ss_pred             HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence            44788999999999999998 688999999988776421 12223568999999997763

variation of the helix-turn-helix motif

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=90.10  E-value=0.43  Score=44.34  Aligned_cols=74  Identities=20%  Similarity=0.360  Sum_probs=53.8

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcC-CCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc----eeeeCCCccee
Q 017908           12 LPPFLSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG----FRKVDPDRYEF   85 (364)
Q Consensus        12 ~~~Fl~KLy~mLed~~~~~IIsWs~-~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG----FrKv~~d~~eF   85 (364)
                      .-....=|.++|+|+++.++|+|.. +|--|.+.|+++-++.-=- +-=.+-||.-.-|-|.+|=    -+||...+..|
T Consensus        68 ~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyyY~kni~~Kv~Gkr~~Y  147 (177)
T KOG3806|consen   68 QIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYYYDKNILKKVPGKRFVY  147 (177)
T ss_pred             hhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCceeecCCceEEE
Confidence            4455666778899999999999998 6889999999999876422 2223678888888887762    24554444444

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=87.55  E-value=2.8  Score=33.53  Aligned_cols=41  Identities=27%  Similarity=0.344  Sum_probs=25.1

Q ss_pred             hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908          133 LEEEVEILKRD-------KNVLMQELVRLRQQQQATDRQLHTVGQRVQ  173 (364)
Q Consensus       133 LeeEve~LKrD-------~~~L~qELv~LRQqQq~~~~qLq~L~qrLq  173 (364)
                      |..++++|+.+       +..|.+|..+|++.+......|..|..++.
T Consensus        23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen   23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44555666655       556666666666666666666666666554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=83.10  E-value=5.2  Score=31.57  Aligned_cols=42  Identities=17%  Similarity=0.279  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 017908          136 EVEILKRDKNVLMQELVRL-------RQQQQATDRQLHTVGQRVQVMEQ  177 (364)
Q Consensus       136 Eve~LKrD~~~L~qELv~L-------RQqQq~~~~qLq~L~qrLq~mEq  177 (364)
                      .+++|+++|..|.+++..+       +++.......|..|+.||.+||+
T Consensus        15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq   63 (65)
T TIGR02449        15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            3455666666555555444       34555556666666667666664

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=81.08  E-value=7  Score=28.54  Aligned_cols=40  Identities=18%  Similarity=0.350  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908          133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV  172 (364)
Q Consensus       133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrL  172 (364)
                      ++.+++.||+..+.|..+..+|+++.+.+..+++.|...+
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566677777777777777777777666666666665544

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	364
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		6e-23
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		3e-16
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		3e-15
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		5e-15
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		6e-15
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		3e-14
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		4e-14
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		4e-14

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 11/109 (10%)
Query: 7   ANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSF 66
           A  +++P FL+K++ +V DP T+ ++ WS S NSF V+   +F++++LPKYFKH+N +SF
Sbjct: 12  AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 67  VRQLNTYGFRK---------VDPDR--YEFANEGFLRGQKHLLKSISRR 104
           VRQLN YGFRK         V P+R   EF +  FLRGQ+ LL++I R+
Sbjct: 72  VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 11  SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQL 70
            +P FL+K++ +V+D  TN ++ W+    SF++   A+F+++LLP  +KH+N +SF+RQL
Sbjct: 3   GVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQL 62
Query: 71  NTYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRR 104
           N YGF K+          D D  EF++  F R    LL  I R+
Sbjct: 63  NMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++LPKYFKHSNF+SFVRQLN 
Sbjct: 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 73 YGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++LPKYFKHSNF+SFVRQLN 
Sbjct: 3  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++LPKYFKHSNF+SFVRQLN 
Sbjct: 1  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++L KYFKHSNF+SFVRQLN 
Sbjct: 1  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++L KYFKHSNF+SFVRQLN 
Sbjct: 1  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++  V D S    + WS+S  S +V     F +++LPKYFKHSNF+SFVRQLN 
Sbjct: 3  PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 63 YGWHKVQDVKSGSXLSNNDSRWEFENE 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	364
1hks_A	106	Heat-shock transcription factor; transcription reg	1e-53
2ldu_A	125	Heat shock factor protein 1; structural genomics,	5e-52
3hts_B	102	Heat shock transcription factor; transcription reg	6e-45
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  171 bits (435), Expect = 1e-53
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 10/106 (9%)

Query: 9   GNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVR 68
           G+ +P FL+K++ +V+D  TN ++ W+    SF++   A+F+++LLP  +KH+N +SF+R
Sbjct: 1   GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 69  QLNTYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRR 104
           QLN YGF K+          D D  EF++  F R    LL  I R+
Sbjct: 61  QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  167 bits (426), Expect = 5e-52
 Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 11/119 (9%)

Query: 1   MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKH 60
              S  A  +++P FL+K++ +V DP T+ ++ WS S NSF V+   +F++++LPKYFKH
Sbjct: 6   HHHSHMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKH 65

Query: 61  SNFSSFVRQLNTYGFRKV-----------DPDRYEFANEGFLRGQKHLLKSISRRKPAQ 108
           +N +SFVRQLN YGFRKV           + D  EF +  FLRGQ+ LL++I R+  + 
Sbjct: 66  NNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSV 124

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  148 bits (376), Expect = 6e-45
 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 11/100 (11%)

Query: 2   SSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHS 61
           S  ++    + P F++K++ MV D S    + WS+S  S +V     F +++LPKYFKHS
Sbjct: 2   SRRASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHS 61

Query: 62  NFSSFVRQLNTYGFRKV-----------DPDRYEFANEGF 90
           NF+SFVRQLN YG+ KV           +  R+EF NE  
Sbjct: 62  NFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 1e-09
 Identities = 65/423 (15%), Positives = 124/423 (29%), Gaps = 118/423 (27%)

Query: 1   MSSSSAANGNSLPPFLSKI---YDM--VEDPSTN--------DIVSWSSSNNS--FIVWK 45
                    + L  F       +D   V+D   +         I+    + +    + W 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 46  --------VAEFSRDLL-PKY-FKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQK 95
                   V +F  ++L   Y F  S   +  RQ        +    Y    +      +
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMTRMYIEQRDRLYNDNQ 124

Query: 96  HLLK-SISRRKPAQVHGQQQPKLQNSSVGACVEV-GKYGLEEEVEILKRDKNVLMQELVR 153
              K ++SR +P   + + +  L        V + G  G           K  +  ++  
Sbjct: 125 VFAKYNVSRLQP---YLKLRQALLELRPAKNVLIDGVLGS---------GKTWVALDVCL 172

Query: 154 LRQQQQATDRQLH--TVGQR---VQVMEQRQQQMINLSTFLIDNIPSANALENGHSSSQI 208
             + Q   D ++    +        V+E  Q     L   +       N       SS I
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQI-----DPNWTSRSDHSSNI 223

Query: 209 SGVTLSEVPPNSGQSNMST--ESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKKNLDPTA 266
                 ++  +S Q+ +    +S+ +  +  +        V  +V     Q  K  +  A
Sbjct: 224 ------KLRIHSIQAELRRLLKSKPY-ENCLL--------VLLNV-----QNAKAWN--A 261

Query: 267 LDG-------TMSID-ADAFSPDHDVDVSPDGIHKLPRIDDAFWEE--------FLTASP 310
            +        T      D  S      +S      L         +        +L   P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHIS------LDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 311 --LPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHM--DHLTEQMG-----LLTSES 361
             LP +    N  P    + +E  +  +    WDN++H+  D LT  +      L  +E 
Sbjct: 316 QDLPREVLTTN--PRRLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 362 RRL 364
           R++
Sbjct: 372 RKM 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.97
4avp_A	106	ETS translocation variant 1; transcription, transc	93.21
2dao_A	118	Transcription factor ETV6; ETS domain, structural	90.77
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	89.82
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	89.74
1yo5_C	97	SAM pointed domain containing ETS transcription fa	89.52
1awc_A	110	Protein (GA binding protein alpha); complex (trans	89.32
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	89.14
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	88.64
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	86.14
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	85.69
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	84.23
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	80.8
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	80.51

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=6e-40  Score=274.05  Aligned_cols=95  Identities=40%  Similarity=0.827  Sum_probs=91.3

Q ss_pred             CCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeC----------
Q 017908           10 NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD----------   79 (364)
Q Consensus        10 ~~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~----------   79 (364)
                      +++|+||.|||+||+|+++++||+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||+|+.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            5678999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCcceecCCCcccCCcccchhhhcc
Q 017908           80 PDRYEFANEGFLRGQKHLLKSISRR  104 (364)
Q Consensus        80 ~d~~eF~H~~F~Rg~~~LL~~IkRk  104 (364)
                      ++.|+|+||+|+||+|+||.+|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            4789999999999999999999997

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=2.1e-39  Score=278.54  Aligned_cols=104  Identities=48%  Similarity=0.892  Sum_probs=97.9

Q ss_pred             CCCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeC-----
Q 017908            5 SAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD-----   79 (364)
Q Consensus         5 s~~~~~~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~-----   79 (364)
                      -+.....+++||.|||+||+||++++||+|+++|++|+|+|+.+|+++|||+||||+||+|||||||+|||+|+.     
T Consensus        10 ~~~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~   89 (125)
T 2ldu_A           10 HMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQG   89 (125)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCS
T ss_pred             ccccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccc
Confidence            356778899999999999999999999999999999999999999999999999999999999999999999983     


Q ss_pred             ------CCcceecCCCcccCCcccchhhhccCCCc
Q 017908           80 ------PDRYEFANEGFLRGQKHLLKSISRRKPAQ  108 (364)
Q Consensus        80 ------~d~~eF~H~~F~Rg~~~LL~~IkRkk~~~  108 (364)
                            ++.|+|+||+|+||+++||.+|+||+++.
T Consensus        90 ~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~~  124 (125)
T 2ldu_A           90 GLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSV  124 (125)
T ss_dssp             SSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTSC
T ss_pred             ccccCCCCccEEECccccCCCHHHHhhCcCCCCCC
Confidence                  46899999999999999999999998753

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.97  E-value=2.5e-33  Score=233.51  Aligned_cols=85  Identities=46%  Similarity=0.854  Sum_probs=77.7

Q ss_pred             CCCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeC-----
Q 017908            5 SAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD-----   79 (364)
Q Consensus         5 s~~~~~~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~-----   79 (364)
                      .+.+.+.+|+||.|||.||+|+++++||+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.     
T Consensus         5 ~s~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g   84 (102)
T 3hts_B            5 ASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSG   84 (102)
T ss_dssp             -----CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC-----
T ss_pred             cCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccC
Confidence            356678899999999999999999999999999999999999999999999999999999999999999999996     


Q ss_pred             ------CCcceecCCC
Q 017908           80 ------PDRYEFANEG   89 (364)
Q Consensus        80 ------~d~~eF~H~~   89 (364)
                            +++|||+|++
T Consensus        85 ~~~~~~~~~wEF~n~~  100 (102)
T 3hts_B           85 SMLSNNDSRWEFENER  100 (102)
T ss_dssp             ----CCSCCEEEEECC
T ss_pred             cccCCCcCCeEecCCC
Confidence                  6899999986

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=93.21  E-value=0.057  Score=45.02  Aligned_cols=73  Identities=23%  Similarity=0.464  Sum_probs=55.6

Q ss_pred             cHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccC---ce-eeeCCCcceec
Q 017908           14 PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTY---GF-RKVDPDRYEFA   86 (364)
Q Consensus        14 ~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~Y---GF-rKv~~d~~eF~   86 (364)
                      ....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=+..+|..+.|-|..|   |. +||...+..|.
T Consensus        13 ~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYk   90 (106)
T 4avp_A           13 QLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK   90 (106)
T ss_dssp             CHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEE
T ss_pred             eHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEE
Confidence            455667889999999999999999889999999888864322 122467899999999887   33 67776666664

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.77  E-value=0.19  Score=42.68  Aligned_cols=80  Identities=16%  Similarity=0.318  Sum_probs=58.7

Q ss_pred             CCCCCCCcHHHHHHHhccCCCCCCceEEcC-CCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccC---ce-eeeCC
Q 017908            7 ANGNSLPPFLSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTY---GF-RKVDP   80 (364)
Q Consensus         7 ~~~~~~~~Fl~KLy~mLed~~~~~IIsWs~-~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~Y---GF-rKv~~   80 (364)
                      ++.+.....-.=|.++|.|+++.++|+|.. ++.-|.+.|+++.++--=. +-=+.-||...-|-|..|   |. +|+..
T Consensus         3 ~~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G   82 (118)
T 2dao_A            3 SGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPG   82 (118)
T ss_dssp             CCCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSS
T ss_pred             CccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccC
Confidence            344455667788889999999999999987 4568999999887765322 222457899999999888   33 56665


Q ss_pred             Ccceec
Q 017908           81 DRYEFA   86 (364)
Q Consensus        81 d~~eF~   86 (364)
                      .+..|.
T Consensus        83 ~r~vY~   88 (118)
T 2dao_A           83 QRLLFR   88 (118)
T ss_dssp             SSSEEE
T ss_pred             CeEEEE
Confidence            665654

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=89.82  E-value=0.21  Score=41.34  Aligned_cols=75  Identities=19%  Similarity=0.335  Sum_probs=55.6

Q ss_pred             CcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc---e-eeeCCCcceecC
Q 017908           13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG---F-RKVDPDRYEFAN   87 (364)
Q Consensus        13 ~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG---F-rKv~~d~~eF~H   87 (364)
                      -....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=..-||..+-|-|..|-   . +||...+..|..
T Consensus         8 i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYkF   87 (102)
T 2ypr_A            8 IQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRF   87 (102)
T ss_dssp             CCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEEE
T ss_pred             EeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence            3456667889999999999999988999999999888764211 1124678999999998873   2 566666666543

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=89.74  E-value=0.17  Score=41.64  Aligned_cols=62  Identities=18%  Similarity=0.325  Sum_probs=47.6

Q ss_pred             CcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc
Q 017908           13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG   74 (364)
Q Consensus        13 ~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG   74 (364)
                      -..-.=|.++|+|+++.++|+|...+.-|.+.|+++.++--=. +-=..-||...-|-|..|-
T Consensus         6 ~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            6 IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             eeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            3455567778899999999999999999999999888764321 1224678999999988773

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21

Probab=89.52  E-value=0.15  Score=41.90  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=51.3

Q ss_pred             CCCCCCCCCCcHHHHHHHhccCCC-CCCceEEcC-CCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCce
Q 017908            4 SSAANGNSLPPFLSKIYDMVEDPS-TNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGF   75 (364)
Q Consensus         4 ~s~~~~~~~~~Fl~KLy~mLed~~-~~~IIsWs~-~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YGF   75 (364)
                      |.++++++....-.=|.++|+||+ ..++|+|.. ++.-|.+.|+++.++--=. +-=...||...-|-|..|--
T Consensus         2 ~~~~~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~   76 (97)
T 1yo5_C            2 SLDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYK   76 (97)
T ss_dssp             -------CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTT
T ss_pred             CcCCCCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence            445666677788888999999986 589999985 6789999999888765322 22246789999999988854

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=89.32  E-value=0.19  Score=42.13  Aligned_cols=70  Identities=17%  Similarity=0.305  Sum_probs=51.2

Q ss_pred             HHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhccc-ccCCCChhhHhhhhccCce----eeeCCCcceec
Q 017908           17 SKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPK-YFKHSNFSSFVRQLNTYGF----RKVDPDRYEFA   86 (364)
Q Consensus        17 ~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~-yFkhsnfsSFvRQLN~YGF----rKv~~d~~eF~   86 (364)
                      .=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=.+ -=..-||...-|-|..|-=    +|+...+..|.
T Consensus         5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~   79 (110)
T 1awc_A            5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK   79 (110)
T ss_dssp             HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred             HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence            3467889999999999999999999999998887653222 2235689999999988733    34444455554

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=89.14  E-value=0.11  Score=42.36  Aligned_cols=76  Identities=17%  Similarity=0.376  Sum_probs=56.7

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc---e-eeeCCCcceec
Q 017908           12 LPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG---F-RKVDPDRYEFA   86 (364)
Q Consensus        12 ~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG---F-rKv~~d~~eF~   86 (364)
                      .-..-.=|.++|.|++..++|+|...+.-|.+.|+++.++--=. +-=..-||...-|-|..|-   . +||...+..|.
T Consensus         4 ~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~   83 (93)
T 1bc8_C            4 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   83 (93)
T ss_dssp             CCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred             cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            34455668899999999999999988889999999888765322 1224678999999998873   2 45665666665


Q ss_pred             C
Q 017908           87 N   87 (364)
Q Consensus        87 H   87 (364)
                      .
T Consensus        84 F   84 (93)
T 1bc8_C           84 F   84 (93)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=88.64  E-value=0.29  Score=40.83  Aligned_cols=79  Identities=18%  Similarity=0.317  Sum_probs=56.3

Q ss_pred             CCCCCCCcHHHHHHHhccCCC-CCCceEEcC-CCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc----eeeeC
Q 017908            7 ANGNSLPPFLSKIYDMVEDPS-TNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG----FRKVD   79 (364)
Q Consensus         7 ~~~~~~~~Fl~KLy~mLed~~-~~~IIsWs~-~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG----FrKv~   79 (364)
                      +++++......=|.++|.|++ ..++|+|.. +..-|.+.|+++.++--=. +-=...||...-|-|..|-    .+||.
T Consensus         3 sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv~   82 (107)
T 1wwx_A            3 SGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD   82 (107)
T ss_dssp             CCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECCS
T ss_pred             CCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecc
Confidence            345556678888899999986 568999987 4679999999888765321 1124678999999998873    24554


Q ss_pred             CCcceec
Q 017908           80 PDRYEFA   86 (364)
Q Consensus        80 ~d~~eF~   86 (364)
                       .+..|.
T Consensus        83 -~rlvY~   88 (107)
T 1wwx_A           83 -RRLVYK   88 (107)
T ss_dssp             -SSSEEE
T ss_pred             -ceEEEE
Confidence             555554

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=86.14  E-value=0.38  Score=42.16  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=59.2

Q ss_pred             CCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCce----eeeCCCcce
Q 017908           10 NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGF----RKVDPDRYE   84 (364)
Q Consensus        10 ~~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YGF----rKv~~d~~e   84 (364)
                      ++....-.=|.++|+|++..++|+|...+.-|.+.|+++.++..=. +-=..-||...-|-|..|-=    +||...+..
T Consensus        37 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv  116 (146)
T 1gvj_A           37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV  116 (146)
T ss_dssp             CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSE
T ss_pred             CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence            4566777788899999999999999999999999999888875322 12235689999999988743    466655666


Q ss_pred             ecC
Q 017908           85 FAN   87 (364)
Q Consensus        85 F~H   87 (364)
                      |..
T Consensus       117 Y~F  119 (146)
T 1gvj_A          117 YRF  119 (146)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            653

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=85.69  E-value=0.56  Score=42.08  Aligned_cols=76  Identities=20%  Similarity=0.299  Sum_probs=57.1

Q ss_pred             CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCce----eeeCCCccee
Q 017908           11 SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGF----RKVDPDRYEF   85 (364)
Q Consensus        11 ~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YGF----rKv~~d~~eF   85 (364)
                      +......=|.++|.|++..++|+|...+.-|.+.|+++.++..=. +-=..-||...-|-|..|-=    +|+...+..|
T Consensus        63 g~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY  142 (171)
T 2nny_A           63 GPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY  142 (171)
T ss_dssp             SSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTEE
T ss_pred             CceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEEE
Confidence            455666778899999999999999999999999999888875322 12235689999999988744    3565555555


Q ss_pred             c
Q 017908           86 A   86 (364)
Q Consensus        86 ~   86 (364)
                      .
T Consensus       143 ~  143 (171)
T 2nny_A          143 R  143 (171)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=84.23  E-value=0.49  Score=39.13  Aligned_cols=73  Identities=15%  Similarity=0.306  Sum_probs=50.9

Q ss_pred             cHHHHHHHhccCCC-CCCceEEcCC-CCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc---e-eeeCCCcceec
Q 017908           14 PFLSKIYDMVEDPS-TNDIVSWSSS-NNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG---F-RKVDPDRYEFA   86 (364)
Q Consensus        14 ~Fl~KLy~mLed~~-~~~IIsWs~~-G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG---F-rKv~~d~~eF~   86 (364)
                      ....=|.++|.|++ ..++|+|... ..-|.+.|+++.++--=. +-=...||..+-|-|..|-   . +||...+..|.
T Consensus         6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~   85 (103)
T 3jtg_A            6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK   85 (103)
T ss_dssp             SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred             cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence            44556778899987 5789999975 569999999888764211 1114678999999998873   2 45555555543

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=80.80  E-value=0.87  Score=40.29  Aligned_cols=76  Identities=17%  Similarity=0.376  Sum_probs=56.9

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc---e-eeeCCCcceec
Q 017908           12 LPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG---F-RKVDPDRYEFA   86 (364)
Q Consensus        12 ~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG---F-rKv~~d~~eF~   86 (364)
                      .-....=|.++|.|++..++|+|...+.-|.+.|+++.++-.=. +-=..-||...-|-|..|-   + +||...+..|.
T Consensus         5 ~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYk   84 (157)
T 1hbx_G            5 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   84 (157)
T ss_dssp             CCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEe
Confidence            34455667889999999999999988889999999888875322 2224678999999998873   2 45665666665


Q ss_pred             C
Q 017908           87 N   87 (364)
Q Consensus        87 H   87 (364)
                      .
T Consensus        85 F   85 (157)
T 1hbx_G           85 F   85 (157)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=80.51  E-value=8.3  Score=30.58  Aligned_cols=47  Identities=26%  Similarity=0.362  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017908          133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQ  179 (364)
Q Consensus       133 LeeEve~LKrD~~~L~qELv~LRQqQq~~~~qLq~L~qrLq~mEqRQ  179 (364)
                      |..+++.||..|..|.+|...++.....+..+.+.|.+-...-..|-
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl   71 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888888777666655544444444444444444433333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	364
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	5e-42
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	3e-35

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  140 bits (354), Expect = 5e-42
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 10/106 (9%)

Query: 9   GNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVR 68
           G+ +P FL+K++ +V+D  TN ++ W+    SF++   A+F+++LLP  +KH+N +SF+R
Sbjct: 1   GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 69  QLNTYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRR 104
           QLN YGF K+          D D  EF++  F R    LL  I R+
Sbjct: 61  QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  122 bits (307), Expect = 3e-35
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)

Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++LPKYFKHSNF+SFVRQLN 
Sbjct: 3  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62

Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	364
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.96
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	95.19
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	92.26
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	91.44
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	91.1
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	89.76
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	89.15
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	83.27

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=7.1e-37  Score=253.13  Aligned_cols=96  Identities=41%  Similarity=0.841  Sum_probs=90.6

Q ss_pred             CCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeC---------
Q 017908            9 GNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD---------   79 (364)
Q Consensus         9 ~~~~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~---------   79 (364)
                      ++++|+||.|||+||+|+++++||+|+++|++|+|+|+.+|+++|||+||+|++|+||+||||+|||+|+.         
T Consensus         1 g~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~   80 (106)
T d1hksa_           1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRF   80 (106)
T ss_dssp             CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSC
T ss_pred             CCCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999973         


Q ss_pred             -CCcceecCCCcccCCcccchhhhcc
Q 017908           80 -PDRYEFANEGFLRGQKHLLKSISRR  104 (364)
Q Consensus        80 -~d~~eF~H~~F~Rg~~~LL~~IkRk  104 (364)
                       ++.++|+||+|+||+|+||..|+||
T Consensus        81 ~~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          81 DRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCCccEEECccccCCCHHHHhhCcCC
Confidence             3568999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.96  E-value=9.7e-31  Score=212.15  Aligned_cols=78  Identities=50%  Similarity=0.922  Sum_probs=73.6

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeC-----------C
Q 017908           12 LPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD-----------P   80 (364)
Q Consensus        12 ~~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~-----------~   80 (364)
                      .|+||.|||.||+|+++++||+|+++|++|+|+|+.+|++.|||+||+|+||+||+||||+|||+|+.           +
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            58899999999999999999999999999999999999999999999999999999999999999984           3


Q ss_pred             CcceecCCC
Q 017908           81 DRYEFANEG   89 (364)
Q Consensus        81 d~~eF~H~~   89 (364)
                      +.|||+|+.
T Consensus        82 ~~~eF~h~~   90 (92)
T d2htsa_          82 SRWEFENER   90 (92)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEEecCC
Confidence            578999974

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=95.19  E-value=0.0049  Score=50.07  Aligned_cols=76  Identities=17%  Similarity=0.350  Sum_probs=55.1

Q ss_pred             CCCcHHHHHHHhcc----CCCCCCc--eEEcCCCCeEEEecCchhhhhhcccccCCCChhhHhhhhccCceeeeCC---C
Q 017908           11 SLPPFLSKIYDMVE----DPSTNDI--VSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDP---D   81 (364)
Q Consensus        11 ~~~~Fl~KLy~mLe----d~~~~~I--IsWs~~G~SFvI~d~~~F~k~VLP~yFkhsnfsSFvRQLN~YGFrKv~~---d   81 (364)
                      .-..|+.|||.+|.    +|++...  |.|..++. |.| +...|++.+      -.+-.|.-.-|..|||+++..   .
T Consensus        26 ~~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~lL------giK~ntlN~Nfr~~gF~q~~~d~~~   97 (114)
T d1pp7u_          26 PNSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVALVM------GIKLNTLNVNLRDLAFEQLQHDKGG   97 (114)
T ss_dssp             GGGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHHHH------TCCHHHHHHHHHHTTCEEEEEEETT
T ss_pred             ccCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHHHH------CCChhhhcCcccccCceeeecCCCc
Confidence            35789999999998    3332221  78999986 776 888998754      223456667777899999864   3


Q ss_pred             cceecCCCcccCC
Q 017908           82 RYEFANEGFLRGQ   94 (364)
Q Consensus        82 ~~eF~H~~F~Rg~   94 (364)
                      .+.|+++.|.|..
T Consensus        98 ~~~w~~~~F~~nS  110 (114)
T d1pp7u_          98 WTQWKRSGFTRNS  110 (114)
T ss_dssp             EEEEECTTEETTE
T ss_pred             ceeeccCCccccc
Confidence            4678899998864

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.26  E-value=0.033  Score=44.79  Aligned_cols=57  Identities=18%  Similarity=0.304  Sum_probs=45.4

Q ss_pred             HHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc
Q 017908           18 KIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG   74 (364)
Q Consensus        18 KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG   74 (364)
                      =|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=+.-||...-|-|..|-
T Consensus         6 FL~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY   63 (110)
T d1awca_           6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHH
Confidence            46788999999999999999999999999888765311 1224578999999998873

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.04  Score=46.71  Aligned_cols=69  Identities=19%  Similarity=0.439  Sum_probs=53.2

Q ss_pred             HHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc----eeeeCCCcceec
Q 017908           18 KIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG----FRKVDPDRYEFA   86 (364)
Q Consensus        18 KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG----FrKv~~d~~eF~   86 (364)
                      =|.++|.|+++.++|+|...+.-|.+.|+++.++..=- +.=...||...-|-|..|-    .+||...+..|.
T Consensus         9 FL~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk   82 (155)
T d1hbxg_           9 FLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   82 (155)
T ss_dssp             HTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             HHHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE
Confidence            35678999999999999999899999999998875321 2224578999999998773    356666777775

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.052  Score=42.77  Aligned_cols=62  Identities=18%  Similarity=0.325  Sum_probs=46.7

Q ss_pred             CcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc
Q 017908           13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG   74 (364)
Q Consensus        13 ~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG   74 (364)
                      .....=|.++|.|+++.++|+|...+.-|.+.|+++.++.-=- +-=...||...-|-|..|-
T Consensus         6 ~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY   68 (98)
T d1flia_           6 IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Confidence            4455667889999999999999888888999999888764311 1113458999999887763

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=0.036  Score=42.76  Aligned_cols=67  Identities=22%  Similarity=0.434  Sum_probs=48.0

Q ss_pred             HHHhccCCCCCCceEEcC-CCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc----eeeeCCCccee
Q 017908           19 IYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG----FRKVDPDRYEF   85 (364)
Q Consensus        19 Ly~mLed~~~~~IIsWs~-~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG----FrKv~~d~~eF   85 (364)
                      |.++|+|+++.++|+|.. ++.-|.+.|+.+.++--=. +-=...||...-|-|..|-    .+||...+..|
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY~~~il~Kv~g~rl~Y   79 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVY   79 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHHTTTSEEECTTSTTEE
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcccEeeccCcEEEE
Confidence            556788999999999998 6899999999888865311 1223468999999997763    34555445444

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.15  E-value=0.052  Score=45.34  Aligned_cols=74  Identities=20%  Similarity=0.332  Sum_probs=54.1

Q ss_pred             CcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhhhhcc-cccCCCChhhHhhhhccCc----eeeeCCCcceec
Q 017908           13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG----FRKVDPDRYEFA   86 (364)
Q Consensus        13 ~~Fl~KLy~mLed~~~~~IIsWs~~G~SFvI~d~~~F~k~VLP-~yFkhsnfsSFvRQLN~YG----FrKv~~d~~eF~   86 (364)
                      -..-.=|.++|.|+++.++|+|...+..|.+.|+++.++.-=- +-=...||...-|-|..|-    .+||...+..|.
T Consensus        40 i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY~k~il~Kv~g~rl~Yk  118 (142)
T d1gvja_          40 IQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYR  118 (142)
T ss_dssp             CCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSEEE
T ss_pred             eeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHhhcceEEecCCcEEEEe
Confidence            3455667889999999999999998888999999998865311 1223578999999998763    245555555553

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.27  E-value=0.11  Score=40.19  Aligned_cols=56  Identities=16%  Similarity=0.325  Sum_probs=38.8

Q ss_pred             HHHHhccCCCCCCceEEcCCCC-eEEEe--cCchhhhhhc-cc-ccCCCChhhHhhhhccC
Q 017908           18 KIYDMVEDPSTNDIVSWSSSNN-SFIVW--KVAEFSRDLL-PK-YFKHSNFSSFVRQLNTY   73 (364)
Q Consensus        18 KLy~mLed~~~~~IIsWs~~G~-SFvI~--d~~~F~k~VL-P~-yFkhsnfsSFvRQLN~Y   73 (364)
                      =|.++|.||++.++|+|...+. .|-+.  ++++.++--= -+ .=..-||...-|-|..|
T Consensus         7 FL~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLRyY   67 (88)
T d1puee_           7 FLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNY   67 (88)
T ss_dssp             HHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHHHH
Confidence            3677889999999999987664 46555  4556665321 11 12356999999999876