Citrus Sinensis ID: 017911

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----

MAEYIYLSNKDTLIIKPSKKSPLLLRLIALLFAVVCGVFFCSIRLKQMSIGNRIRFQPFQVLGRSYSEYGIKQIEISGENDTKQLEVPPVYHLTQIEVPGNNDTEQFEFPPVHYPKPQTFNRTECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKKLKEVLEFLRLPQMKLKSRQVKIHRGTLSEHIQNWNDVKKTLNGTEYGSLLLADYRR

cccccccccccEEEEcccccccHHHHHHHHHHHHHHHEEEEEEEEEcccccccccccccEEEccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHccHHHHHHccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHcccccccccccccccccccHHHHHccHHHHHHHHccccccHHHHHcccc

ccHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHEEEEEHHHccccccccEEcEEEEcccccccccEEEEEEEcccccccccccEEEccccccccccccccccccEEcccccccccHHHccccccEEEEEEEccccccHHHHHHHHccccccccccEEccccHHccccHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHccccHHcccccEEEccccHHHHHHcHHHHHHHHccccHHHHHHHHccc

MAEYIylsnkdtliikpskksPLLLRLIALLFAVVCGVFFCSIRLKqmsignrirfqpfqvlgrsyseygIKQIeisgendtkqlevppvyhltqievpgnndteqfefppvhypkpqtfnrtecahnpVQYFAIISMQRSGSGWFETLLNSHmnvssngeifstLDTVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLngthkshvhsHQEAEalsrykpaiNSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKKLKEVLEFLRlpqmklksrqvkiHRGTLSEHIQNWNDVKKTLNGTEYGSLLLADYRR

maeyiylsnkdtliikpsKKSPLLLRLIALLFAVVCGVFFCSIRLKQMSIGNRIRFQPFQVLGRSYSEYGIKQIEISGENDTKQLEVPPVYHLTQIEVPGNNDTEQFEFPPVHYPKPQTFNRTECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEaealsrykpaINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKKLKEVLEflrlpqmklksrqvkihrgtlsehiqnwndvkktlngteygsllladyrr

MAEYIYLSNKDTliikpskksplllrliallFAVVCGVFFCSIRLKQMSIGNRIRFQPFQVLGRSYSEYGIKQIEISGENDTKQLEVPPVYHLTQIEVPGNNDTEQFEFPPVHYPKPQTFNRTECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVIflfrrnllrrlvsvlansYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKKLKEVLEFLRLPQMKLKSRQVKIHRGTLSEHIQNWNDVKKTLNGTEYGSLLLADYRR

***YIYLSNKDTLIIKPSKKSPLLLRLIALLFAVVCGVFFCSIRLKQMSIGNRIRFQPFQVLGRSYSEYGIKQIEISGENDTKQLEVPPVYHLTQIEVPGNNDTEQFEFPPVHYPKPQTFNRTECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHV*******ALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKKLKEVLEFLRLPQMKLKSRQVKIHRGTLSEHIQNWNDVKKTLNGTEYGSLLLA****

*AEYIYLSNKDTLIIKPSKKSPLLLRLIALLFAVVCGVFFCSIRLKQMSIGNRIRFQPFQVLGRSYSE*****************EVPPVYHLTQIEVPGNNDTEQFEFPPVHYPKPQTFNRTECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKKLKEVLEFLRLPQM***************EHIQNWNDVKKTLNGTEYGSLLLADYR*

MAEYIYLSNKDTLIIKPSKKSPLLLRLIALLFAVVCGVFFCSIRLKQMSIGNRIRFQPFQVLGRSYSEYGIKQIEISGENDTKQLEVPPVYHLTQIEVPGNNDTEQFEFPPVHYPKPQTFNRTECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGT************ALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKKLKEVLEFLRLPQMKLKSRQVKIHRGTLSEHIQNWNDVKKTLNGTEYGSLLLADYRR

*AEYIYLSNKDTLIIKPSKKSPLLLRLIALLFAVVCGVFFCSIRLKQMSIGNRIRFQPFQVLGRSYSEYGIKQIEISGENDTKQLEVPPVYHLTQIEVPGNNDTEQFEFPPVHYPKPQTFNRTECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKKLKEVLEFLRLPQMKLKSRQVKIHRGTLSEHIQNWNDVKKTLNGTEYGSLLLADYRR

iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		364	2.2.26 [Sep-21-2011]
P06236		247	Nodulation protein H OS=R	yes	no	0.579	0.854	0.253	5e-07
P06237		247	Nodulation protein H OS=R	yes	no	0.565	0.834	0.244	1e-06

>sp\|P06236\|NODH_RHIME Nodulation protein H OS=Rhizobium meliloti (strain 1021) GN=nodH PE=4 SV=1	Back alignment and function desciption

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 38/249 (15%)

Query: 129 PVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVY---------NLDLFTSA- 178
           P Q FAI++M R+G+ + E L+N H NV SNGE+ +T DT +         + +L   A 
Sbjct: 7   PPQPFAILAMPRTGTHYLEELVNEHPNVLSNGELLNTYDTNWPDKERLLLSDRELLERAF 66

Query: 179 -----SKNECSAAVGFKWMLNQGLMQYHKE-IVEYFNRRGVSVIFLFRRNLLRRLVS-VL 231
                  ++    VG K  +N+   Q       E     G+ VI + RRN L  L S V 
Sbjct: 67  LRYPPHSDKKVTHVGCK--INEPQFQERPSFFAELTAWPGLKVILVIRRNTLESLRSFVQ 124

Query: 232 ANSYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAE--LKEMELTAAKAFEYF 289
           A    ++ K  + +              S   P +       E   K  +   A+    F
Sbjct: 125 ARQTRQWLKFKSDS--------------SAPPPPVMLPFATCEAYFKAADDFHARVVYAF 170

Query: 290 NSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQMKLKSRQVKIHRGT--LSEHIQNWNDVK 346
           +S+R  ++ YE L+++    +  VL+FL  P ++L  R +   + T  L + ++N+++++
Sbjct: 171 DSSRIRLIEYERLLRDPVPCVATVLDFLGAPALQLADRGILRRQETRPLDQTVRNFHELR 230

Query: 347 KTLNGTEYG 355
                  Y 
Sbjct: 231 VHFANGPYA 239

Required for the formation of sulfated nod factor. Proposed to transfer activated sulfate (PAPS) to a N-acetylglucosamine of the nod factor.
Rhizobium meliloti (strain 1021) (taxid: 266834)
EC: 2EC: .EC: 8EC: .EC: 2EC: .EC: -

>sp\|P06237\|NOH4_RHIML Nodulation protein H OS=Rhizobium meliloti GN=nodH PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		364
224084324		342	predicted protein [Populus trichocarpa]	0.903	0.961	0.650	1e-137
224094390		342	predicted protein [Populus trichocarpa]	0.903	0.961	0.645	1e-137
359480689		362	PREDICTED: uncharacterized protein LOC10	0.950	0.955	0.613	1e-129
225438662		340	PREDICTED: uncharacterized protein LOC10	0.898	0.961	0.608	1e-128
42565806		340	nodulation-related protein [Arabidopsis	0.890	0.952	0.613	1e-125
297819744		340	hypothetical protein ARALYDRAFT_485408 [	0.890	0.952	0.616	1e-125
449530259		340	PREDICTED: uncharacterized LOC101217742	0.898	0.961	0.608	1e-124
449529180		344	PREDICTED: nodulation protein H-like [Cu	0.906	0.959	0.592	1e-123
356565626		350	PREDICTED: nodulation protein H-like [Gl	0.909	0.945	0.586	1e-122
449438424		346	PREDICTED: nodulation protein H-like iso	0.876	0.921	0.602	1e-122

>gi\|224084324\|ref\|XP_002307259.1\| predicted protein [Populus trichocarpa] gi\|222856708\|gb\|EEE94255.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/375 (65%), Positives = 288/375 (76%), Gaps = 46/375 (12%)

Query: 1   MAEYIYLSNKDTLIIKPSKKSPLLLRLIALLFAVVCGVFFCSIRLKQMSIGNRIRFQPFQ 60
           MAEYI L NKDT++IKP+KK+P+LLR+I L+FA+VCGV+ CS+ LKQ SI ++I+FQ  Q
Sbjct: 1   MAEYICLLNKDTIVIKPAKKTPILLRMIVLMFAMVCGVYICSVCLKQTSIHSKIKFQDIQ 60

Query: 61  VLGRSYSEYGIKQIEISGENDTKQLEVPPVYHLTQIEVPGNNDTEQFEFPPVHYPKPQTF 120
           V+ R           +S ++D   L++  V                      HYP P+TF
Sbjct: 61  VVER-----------LSPDDDHGNLQISSV----------------------HYPNPETF 87

Query: 121 NRTECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFS-------------TLD 167
           +R ECAHNPV+YFAI+SMQRSGSGWFETLLNSH+NVSSNGEIFS             TLD
Sbjct: 88  SRAECAHNPVRYFAILSMQRSGSGWFETLLNSHVNVSSNGEIFSVLDRRRNISSITRTLD 147

Query: 168 TVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEYFNRRGVSVIFLFRRNLLRRL 227
            VYNLD FTSASKNECSAAVGFKWMLNQG+MQ+HKEI +YFNRRGV  IFLFRRNLLRR+
Sbjct: 148 KVYNLDWFTSASKNECSAAVGFKWMLNQGVMQHHKEISDYFNRRGVFAIFLFRRNLLRRM 207

Query: 228 VSVLANSYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAELKEMELTAAKAFE 287
           VSVLANSYDR+AKLLNGTHKSHVHS +EA+ L++YKP INSTLLI++LKE+E+TAAKA E
Sbjct: 208 VSVLANSYDRHAKLLNGTHKSHVHSTEEAKTLAKYKPMINSTLLISDLKEVEITAAKALE 267

Query: 288 YFNSTRHIVLYYEDLVKNRKKLKEVLEFLRLPQMKLKSRQVKIHRGTLSEHIQNWNDVKK 347
           YFNSTRHIVLYYEDL+KN  KLK+V  FL LP M+L SRQVKIH+G LS+H++NW DV K
Sbjct: 268 YFNSTRHIVLYYEDLIKNPAKLKDVQAFLGLPLMELMSRQVKIHKGPLSDHVKNWEDVNK 327

Query: 348 TLNGTEYGSLLLADY 362
           TLNGT Y S L ADY
Sbjct: 328 TLNGTAYESFLQADY 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224094390\|ref\|XP_002310152.1\| predicted protein [Populus trichocarpa] gi\|222853055\|gb\|EEE90602.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359480689\|ref\|XP_003632512.1\| PREDICTED: uncharacterized protein LOC100254393 isoform 2 [Vitis vinifera] gi\|296082441\|emb\|CBI21446.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225438662\|ref\|XP_002281772.1\| PREDICTED: uncharacterized protein LOC100254393 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|42565806\|ref\|NP_190631.2\| nodulation-related protein [Arabidopsis thaliana] gi\|45773806\|gb\|AAS76707.1\| At3g50620 [Arabidopsis thaliana] gi\|114050671\|gb\|ABI49485.1\| At3g50620 [Arabidopsis thaliana] gi\|332645165\|gb\|AEE78686.1\| nodulation-related protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297819744\|ref\|XP_002877755.1\| hypothetical protein ARALYDRAFT_485408 [Arabidopsis lyrata subsp. lyrata] gi\|297323593\|gb\|EFH54014.1\| hypothetical protein ARALYDRAFT_485408 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449530259\|ref\|XP_004172113.1\| PREDICTED: uncharacterized LOC101217742 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449529180\|ref\|XP_004171579.1\| PREDICTED: nodulation protein H-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356565626\|ref\|XP_003551040.1\| PREDICTED: nodulation protein H-like [Glycine max]	Back alignment and taxonomy information

>gi\|449438424\|ref\|XP_004136988.1\| PREDICTED: nodulation protein H-like isoform 2 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		364
TAIR\|locus:2098710		340	AT3G50620 "AT3G50620" [Arabido	0.714	0.764	0.667	2.3e-99
TAIR\|locus:2053578		344	AT2G15730 "AT2G15730" [Arabido	0.714	0.755	0.608	3.4e-90

TAIR\|locus:2098710 AT3G50620 "AT3G50620" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 928 (331.7 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
 Identities = 183/274 (66%), Positives = 205/274 (74%)

Query:   103 DTEQFEFPP-VHYPKPQTFNRTECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGE 161
             D+    F   +HYPKPQTFNR EC HNPV+YFAI+SMQRSGSGWFETLLNSH NVSSNGE
Sbjct:    67 DSHSLRFVTRIHYPKPQTFNRAECGHNPVRYFAILSMQRSGSGWFETLLNSHNNVSSNGE 126

Query:   162 IFS-------------TLDTVYNLDLFTSASKNECSAAVGFKWMLNQGLMQYHKEIVEYF 208
             IFS             TLD VYNLD FTSASKNECSAA+GFKWMLNQGL++ HK+IVEYF
Sbjct:   127 IFSVLDRRKNISSIIQTLDRVYNLDWFTSASKNECSAAIGFKWMLNQGLLENHKDIVEYF 186

Query:   209 NRRGVSVIXXXXXXXXXXXXXXXXXXYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINS 268
             NRRGVS I                  YDRYAKLLNGTHKSHVHS  EA+ALSRYKP INS
Sbjct:   187 NRRGVSAIFLFRRNPLRRMVSVLANSYDRYAKLLNGTHKSHVHSPAEADALSRYKPVINS 246

Query:   269 TLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKKLKEVLEFLRLPQMKLKSRQV 328
             T LI +L+E E +AAKA EYFN+TRHIV++YEDL+ N+  LK+V EFL +P   L SRQV
Sbjct:   247 TSLIHDLQETENSAAKALEYFNTTRHIVVFYEDLITNQTTLKQVQEFLNIPVKDLSSRQV 306

Query:   329 KIHRGTLSEHIQNWNDVKKTLNGTEYGSLLLADY 362
             KIHRG LS+HI+NW D+ KTLNGTEY   L ADY
Sbjct:   307 KIHRGDLSDHIKNWEDINKTLNGTEYEKFLRADY 340

GO:0005575 "cellular_component" evidence=ND

GO:0008146 "sulfotransferase activity" evidence=IEA

TAIR\|locus:2053578 AT2G15730 "AT2G15730" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.8.2	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0027004202	hypothetical protein (342 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		364
PF09037		245	Sulphotransf: Stf0 sulphotransferase; InterPro: IP	99.96
COG4424		250	Uncharacterized protein conserved in bacteria [Fun	99.81
PF00685		267	Sulfotransfer_1: Sulfotransferase domain; InterPro	99.7
KOG3704		360	consensus Heparan sulfate D-glucosaminyl 3-O-sulfo	99.4
PLN02164		346	sulfotransferase	99.38
KOG3988		378	consensus Protein-tyrosine sulfotransferase TPST1/	99.32
KOG3703		873	consensus Heparan sulfate N-deacetylase/N-sulfotra	99.3
KOG1584		297	consensus Sulfotransferase [General function predi	99.3
PF13469		215	Sulfotransfer_3: Sulfotransferase family; PDB: 3AP	99.3
COG3551		402	Uncharacterized protein conserved in bacteria [Fun	94.49
PF06990		402	Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ;	91.63
PF03567		253	Sulfotransfer_2: Sulfotransferase family; InterPro	89.6
KOG3922		361	consensus Sulfotransferases [Posttranslational mod	83.93

>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes	Back alignment and domain information

Probab=99.96  E-value=4e-29  Score=236.91  Aligned_cols=204  Identities=25%  Similarity=0.294  Sum_probs=116.0

Q ss_pred             cEEEEccCCchHHHHHHHHhcCcCCCCCCcccch------------------hhhhcchhhhhhhccc--chhhhccchh
Q 017911          132 YFAIISMQRSGSGWFETLLNSHMNVSSNGEIFST------------------LDTVYNLDLFTSASKN--ECSAAVGFKW  191 (364)
Q Consensus       132 ~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gElf~~------------------ld~~~~~~w~~sa~~~--~~~~a~G~K~  191 (364)
                      .|+||++||||||||+++|++|+.+..++|+|+.                  .|.....+|++.+.+.  ....++|+|+
T Consensus         1 ~yii~~t~RSGStlL~~~L~~tg~~G~p~E~F~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ngv~G~KL   80 (245)
T PF09037_consen    1 SYIICSTQRSGSTLLCELLRATGVAGRPQEFFQSPQPREWFAGVGLPSDPGTPDKEDPDEWLDAALARGRTPNGVFGFKL   80 (245)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHCTSS-----TT----HHHHTTT--------------HHHHHHHHHHHTB-TTS-EEEEE
T ss_pred             CeEEEeCCCCcHHHHHHHHHhCcCCCCchHhcCCccHHHHHhhcCCcccccccccccHHHHHHHHHHhcCCCCCeEEEEe
Confidence            3799999999999999999999999999999961                  1112234566654333  2246899999


Q ss_pred             hcccc-cc--------c----cchHHH-HHhhcCCcEEEEEeccChhHHHHHHHHhhhhHHHHHhcCccccccCChHHHH
Q 017911          192 MLNQG-LM--------Q----YHKEIV-EYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAE  257 (364)
Q Consensus       192 m~~q~-~~--------~----~~p~~~-~~l~~p~~kiI~L~RRNpLdravS~~~~~~~r~A~~~~g~h~~hv~s~~eA~  257 (364)
                      |.+|- .+        .    ....++ ++  .+++++|||.|||.|+|+||+++      |+++|.||.... ..+...
T Consensus        81 m~~q~~~~~~~~~~l~~~~~~d~~~~i~~~--~~~~~~I~L~R~d~l~QAvS~~~------A~qtg~w~~~~~-~~~~~r  151 (245)
T PF09037_consen   81 MWNQLPLLIRRLAHLYPGRSSDHLRFIEDL--FGDVKFIHLRRRDLLRQAVSLWR------ARQTGVWHQHAD-GTRDER  151 (245)
T ss_dssp             EGGGHHHHHHHHTTS-TT---SSHHHHHHH--HTS-EEEEEE-S-HHHHHHHHHH------HHHHS------------TT
T ss_pred             cHhhhHHHHHHHhhhcccccccHHHHHHHH--cCCeEEEEEEeCCHHHHHHHHHH------HHhCCCcccCCC-CCcccc
Confidence            98862 10        0    111133 33  36799999999999999999999      999999986321 111110


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHHHHHHc--CCCCeEEEechhhhcCHHH-HHHHHHHhCCCCcCcccccccccccC
Q 017911          258 ALSRYKPAINSTLLIAELKEMELTAAKAFEYF--NSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQMKLKSRQVKIHRGT  334 (364)
Q Consensus       258 ~La~~kp~~d~~~Li~~l~~~~~~~~~~~~~f--~~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~~l~s~~vKih~~~  334 (364)
                      .-...++.+|...+...+.+.++..+.|..+|  .+.+++.|.||||++||++ +++|++||||++....  .++.+..+
T Consensus       152 ~~~~~~~~yd~~~i~~~i~~i~~~~~~w~~~f~~~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~~~--~~~~~~~k  229 (245)
T PF09037_consen  152 VSPPRKPRYDFEEIAHLIDRIEDQEAFWRNWFARHGIEPLEITYEDLLADPQKTVARVLDFLGVDPPLAP--IVKPPLKK  229 (245)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGGS-----------
T ss_pred             ccccccceeCHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcccc--cCCCCcee
Confidence            00112467888888888888888888888888  4567899999999999999 9999999999887533  34555566


Q ss_pred             hhh-hccCHHHHH
Q 017911          335 LSE-HIQNWNDVK  346 (364)
Q Consensus       335 l~~-~V~N~dEv~  346 (364)
                      ++| +.+||.+-.
T Consensus       230 qsd~~s~eW~~ry  242 (245)
T PF09037_consen  230 QSDERSEEWVERY  242 (245)
T ss_dssp             -------HHHHHH
T ss_pred             cCCCChHHHHHHH
Confidence            666 567777643

They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.

>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase	Back alignment and domain information

>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN02164 sulfotransferase	Back alignment and domain information

>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1584 consensus Sulfotransferase [General function prediction only]	Back alignment and domain information

>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A	Back alignment and domain information

>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins	Back alignment and domain information

>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids	Back alignment and domain information

>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		364
1tex_A		287	STF0 sulfotransferase; sulfolipid, sulfation, TREH	9e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3rnl_A		311	Sulfotransferase; structural genomics, PSI-biology	2e-05
1t8t_A		271	Heparan sulfate D-glucosaminyl 3-O- sulfotransfera	6e-05

>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium smegmatis} SCOP: c.37.1.5 Length = 287	Back alignment and structure

 Score = 58.0 bits (139), Expect = 9e-10
 Identities = 44/273 (16%), Positives = 77/273 (28%), Gaps = 61/273 (22%)

Query: 122 RTECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTL--------------- 166
           R     +    + +++ QRSGS      L +        E F  L               
Sbjct: 17  RGSHMSDHPTAYLVLASQRSGSTLLVESLRATGVAGEPQEFFQYLPNTSMSPQPREWFAD 76

Query: 167 ----DTVYNLDLFTSASKNECSAAV----------------GFKWMLNQ--GLMQYHKEI 204
                 +  LD       +   A +                G K M NQ   L+Q  K++
Sbjct: 77  VEDQSILRLLDPLIEGKPDLAPATIWRDYIQTVGRTPNGVWGGKLMWNQTPLLVQRAKDL 136

Query: 205 VEYFNR-----------RGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSH 253
            +                   +I + R +++ + VS               T        
Sbjct: 137 PDRSGSGLLSAIRDVVGSDPVLIHIHRPDVVSQAVSFWRAVQ---------TRVWRGRPD 187

Query: 254 QEAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKN-RKKLKEV 312
              +A + Y        +I  L+  E      F   N    I + Y  L +N  + +  V
Sbjct: 188 PVRDARAEYHAG-AIAHVITMLRAQEEGWRAWFTEENVE-PIDVDYPYLWRNLTEVVGTV 245

Query: 313 LEFLRL-PQMKLKSRQVKIHRGTLSEHIQNWND 344
           LE L   P++  K    +       E ++ +  
Sbjct: 246 LEALGQDPRLAPKPVLERQADQRSDEWVERYRR 278

PyMOL of 1tex

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp} Length = 311	Back alignment and structure

>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1; alpha-beta motif, substrate-binding cleft; HET: A3P CIT; 1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A* Length = 271	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		364
1tex_A		287	STF0 sulfotransferase; sulfolipid, sulfation, TREH	99.96
3uan_A		269	Heparan sulfate glucosamine 3-O-sulfotransferase;	99.89
4gox_A		313	Polyketide synthase; olefin synthase, hydrocarbon,	99.87
3bd9_A		280	Heparan sulfate glucosamine 3-O-sulfotransferase 5	99.87
3rnl_A		311	Sulfotransferase; structural genomics, PSI-biology	99.86
4gbm_A		323	CURM sulfotransferase; polyketide synthase, curaci	99.86
1nst_A		325	NST1, heparan sulfate N-deacetylase/N-sulfotransfe	99.84
1t8t_A		271	Heparan sulfate D-glucosaminyl 3-O- sulfotransfera	99.83
3ap1_A		337	Protein-tyrosine sulfotransferase 2; sulfotransfer	99.8
2zq5_A		384	Putative uncharacterized protein; sulfotransferase	99.78
2zpt_X		295	Tyrosine-ester sulfotransferase; SULT1D1, catechol	99.71
2z6v_A		414	Putative uncharacterized protein; sulfotransferase	99.69
1zd1_A		284	Sulfotransferase 4A1; SGC, SULT4A1, structural gen	99.69
1ls6_A		295	ARYL sulfotransferase; SULT 1A1, PAP, P-nitropheno	99.69
1q20_A		299	SULT2B1B, sulfotransferase family, cytosolic, 2B,	99.68
2reo_A		305	Putative sulfotransferase 1C3; sulfate conjugation	99.67
3bfx_A		296	Sulfotransferase 1C2; PAP, structural genomics, PS	99.67
2gwh_A		298	Sulfotransferase 1C2; sulfate conjugation, pentach	99.66
3ckl_A		298	Sulfotransferase family cytosolic 1B member 1; SUL	99.66
1aqu_A		297	EST, estrogen sulfotransferase; PAP, sulfonation,	99.65
1j99_A		293	Alcohol sulfotransferase; dehydroepiandosterone, D	99.64
1q1q_A		350	SULT2B1A, sulfotransferase family, cytosolic, 2B,	99.63
2ov8_A		288	STAL; sulfotransferase, structural genomics, montr	99.58
1q44_A		326	RARO47, steroid sulfotransferase, AT2G03760/; APO,	99.47
1fmj_A		351	Retinol dehydratase; sulfotransferase, adenosine 3	99.42
3mgb_A		319	TEG12; sulfotransferase, glycopeptide, antibiotic,	99.17

>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium smegmatis} SCOP: c.37.1.5	Back alignment and structure

Probab=99.96  E-value=6.6e-29  Score=238.59  Aligned_cols=205  Identities=15%  Similarity=0.090  Sum_probs=134.6

Q ss_pred             cccCCCCCCcEEEEccCCchHHHHHHHHhcCcCCCCCCcccchhh--------hhc------------------------
Q 017911          123 TECAHNPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLD--------TVY------------------------  170 (364)
Q Consensus       123 ~e~~~~p~~~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gElf~~ld--------~~~------------------------  170 (364)
                      .+..++|+++|||||+||||||||+++|++|+.+..++|.|..+.        ..|                        
T Consensus        18 ~~~m~~~~~~ffIvG~pRSGSTlLe~~L~sh~~~g~p~e~f~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~   97 (287)
T 1tex_A           18 GSHMSDHPTAYLVLASQRSGSTLLVESLRATGVAGEPQEFFQYLPNTSMSPQPREWFADVEDQSILRLLDPLIEGKPDLA   97 (287)
T ss_dssp             -----CCCCEEEEEECTTSTHHHHHHHHHHHTSSCCCCCTTCCCTTTSSCCCHHHHTCC-CCTTTTTTSCCCCCCCCCCC
T ss_pred             hhhcCCCCCeEEEEcCCCCcHHHHHHHHHcCCCCCCcHHHHhcccccccccchhhhhhccchhHHHhhhccccccchhhh
Confidence            455678899999999999999999999999999999998776110        000                        


Q ss_pred             -chhhhhhh--cccchhhhccchhhcccc-ccc----cch-----HHHHHhh--cCC-cEEEEEeccChhHHHHHHHHhh
Q 017911          171 -NLDLFTSA--SKNECSAAVGFKWMLNQG-LMQ----YHK-----EIVEYFN--RRG-VSVIFLFRRNLLRRLVSVLANS  234 (364)
Q Consensus       171 -~~~w~~sa--~~~~~~~a~G~K~m~~q~-~~~----~~p-----~~~~~l~--~p~-~kiI~L~RRNpLdravS~~~~~  234 (364)
                       ..+|+..+  ....+...+|+|+|.++. .+.    ..|     ...+.+.  +|+ +|+|+|.||||+++++|.++  
T Consensus        98 ~~~~yl~~~~~~~~~~~~~~g~~~~~~~~~~~~~rl~~~p~~~~~~l~~~I~~~fp~~ak~I~l~Rrdpl~~~vS~~~--  175 (287)
T 1tex_A           98 PATIWRDYIQTVGRTPNGVWGGKLMWNQTPLLVQRAKDLPDRSGSGLLSAIRDVVGSDPVLIHIHRPDVVSQAVSFWR--  175 (287)
T ss_dssp             CHHHHHHHHHHHTBCTTSCEEEEEEGGGHHHHHHHHTTCTTCCCSSHHHHHHHHHTSCCEEEECBCCCHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHhccCCCcceeeeecccccHHHHHHhhcCccccchhhHHHHHHhcCCCcEEEEEEcCCcHHHHHHHHH--
Confidence             01244432  112344567888887642 110    000     0122221  577 99999988899999999998  


Q ss_pred             hhHHHHHhcCccccccCChHHHHHhhccCCCCChHHHHHHHHHHHHHHHHHHHHcC--CCCeEEEechhhhcCHHH-HHH
Q 017911          235 YDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFN--STRHIVLYYEDLVKNRKK-LKE  311 (364)
Q Consensus       235 ~~r~A~~~~g~h~~hv~s~~eA~~La~~kp~~d~~~Li~~l~~~~~~~~~~~~~f~--~~~~l~V~YEDLv~dP~~-l~~  311 (364)
                          |.++++|++.+. +.+      ...+.+|..++...++++.+++++|.++|+  +.++++|.||||++||+. +++
T Consensus       176 ----a~~~~~w~~~~~-~~~------~~~~~~d~~~i~~y~~~~~~~~~~w~~~f~~~~~~~l~v~YEDLv~dP~~~l~~  244 (287)
T 1tex_A          176 ----AVQTRVWRGRPD-PVR------DARAEYHAGAIAHVITMLRAQEEGWRAWFTEENVEPIDVDYPYLWRNLTEVVGT  244 (287)
T ss_dssp             ----HHHHCCCC----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCBHHHHHHHHHHHHHH
T ss_pred             ----HHhcCceeccCC-Ccc------ccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEHHHHHhCHHHHHHH
Confidence                778888987541 112      224678999999999999999999999995  457889999999999999 999


Q ss_pred             HHHHhCCCCcCccc-ccccccccChhhhcc
Q 017911          312 VLEFLRLPQMKLKS-RQVKIHRGTLSEHIQ  340 (364)
Q Consensus       312 Vl~FLGLp~~~l~s-~~vKih~~~l~~~V~  340 (364)
                      |++||||++..... ...|+...+-.+-+.
T Consensus       245 l~~FLGl~~~~~~~~~~~~~~~~~~~~~~~  274 (287)
T 1tex_A          245 VLEALGQDPRLAPKPVLERQADQRSDEWVE  274 (287)
T ss_dssp             HHHHTTSCTTCC--------------CCST
T ss_pred             HHHHhCCCccccCCchhhcccCCchHHHHH
Confidence            99999999986432 444554444444333

PyMOL of 1tex

>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif, CO-FACT PAPS/PAP, heparan sulfate oligosaccharides, golgi-localized transferase; HET: A3P NGY BDP SGN IDS; 1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*	Back alignment and structure

>4gox_A Polyketide synthase; olefin synthase, hydrocarbon, sulfotran PAPS, PAP, 3'phosphoadenosine-5'phosphosulfate, transferase; HET: A3P; 2.15A {Synechococcus SP}	Back alignment and structure

>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate biosynthesis, substrate specificity, glycoprotein, golgi apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}	Back alignment and structure

>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>4gbm_A CURM sulfotransferase; polyketide synthase, curacin, PAP, PAPS; HET: A3P P6G; 1.62A {Moorea producta}	Back alignment and structure

>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP, haparin sulfate, haparin sulfate biosynthesis, glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP: c.37.1.5	Back alignment and structure

>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1; alpha-beta motif, substrate-binding cleft; HET: A3P CIT; 1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*	Back alignment and structure

>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold, transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A* 3ap3_A*	Back alignment and structure

>2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A {Mycobacterium tuberculosis}	Back alignment and structure

>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine, sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB: 2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*	Back alignment and structure

>2z6v_A Putative uncharacterized protein; sulfotransferase, unknown function; HET: PLM; 2.60A {Mycobacterium avium}	Back alignment and structure

>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural genomics conso transferase; 2.24A {Homo sapiens}	Back alignment and structure

>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive cooperativity, two substrate binding sites; HET: A3P NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A* 3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A* 3qvu_A* 1z29_A* 1cjm_A 2a3r_A*	Back alignment and structure

>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A {Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*	Back alignment and structure

>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens} PDB: 2h8k_A*	Back alignment and structure

>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein structure initiative, structural genomics consortium, SGC, alternative splicing; HET: A3P; 1.80A {Homo sapiens} SCOP: c.37.1.5	Back alignment and structure

>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA pesticide, structural genomics, structural genomics consort transferase; HET: A3P PCI; 1.80A {Homo sapiens} PDB: 2ad1_A*	Back alignment and structure

>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human cytosolic sulfotransferase, resveratrol, SGC, cytoplasm, lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens} PDB: 2z5f_A*	Back alignment and structure

>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A* 1g3m_A*	Back alignment and structure

>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND; 1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A* 2qp3_A* 2qp4_A* 1efh_A*	Back alignment and structure

>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens} SCOP: c.37.1.5	Back alignment and structure

>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston bacterial structural genomics initiative, BSGI, UN function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A 2ovf_A*	Back alignment and structure

>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu genomics, protein structure initiative, center for eukaryot structural genomics; 1.90A {Arabidopsis thaliana} SCOP: c.37.1.5 PDB: 2q3m_A	Back alignment and structure

>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'- diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda} SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*	Back alignment and structure

>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		364
d1t8ta_		271	c.37.1.5 (A:) Heparan sulfate glucosamine 3-O-sulf	6e-10
d1vkja_		258	c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase	4e-09
d1nsta_		301	c.37.1.5 (A:) Heparan sulfate N-deacetylase/N-sulf	5e-08
d1texa_		265	c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium	8e-08

>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine 3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 271	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: PAPS sulfotransferase
domain: Heparan sulfate glucosamine 3-O-sulfotransferase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 6e-10
 Identities = 23/190 (12%), Positives = 58/190 (30%), Gaps = 10/190 (5%)

Query: 133 FAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYNLDLFTSASKNECSAAVGFKWM 192
             II +++ G+      L  H +V + G      D  Y+  L         +        
Sbjct: 20  AIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITME 79

Query: 193 LNQGLMQYHKEIVEYFNRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHS 252
                    +           + + +  R+ + R +S    +            +  + +
Sbjct: 80  KTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLS---------KRPDIPT 130

Query: 253 HQEAEALSRYKPAINSTLLIAELKEMELTAAKAFEYFNSTRHIVLYYEDLVKNRKK-LKE 311
            +     +R    I+++    ++            +F   + + +  E L+ +    L  
Sbjct: 131 FESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGR 190

Query: 312 VLEFLRLPQM 321
           V +FL L ++
Sbjct: 191 VQDFLGLKRI 200

PyMOL of d1t8ta_

>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse (Mus musculus) [TaxId: 10090]} Length = 258	Back information, alignment and structure

>d1nsta_ c.37.1.5 (A:) Heparan sulfate N-deacetylase/N-sulfotransferase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 301	Back information, alignment and structure

>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium smegmatis [TaxId: 1772]} Length = 265	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		364
d1t8ta_		271	Heparan sulfate glucosamine 3-O-sulfotransferase 3	99.9
d1texa_		265	Stf0 sulfotransferase {Mycobacterium smegmatis [Ta	99.9
d1vkja_		258	Heparan sulfate 3-O-sulfotransferase {Mouse (Mus m	99.87
d1nsta_		301	Heparan sulfate N-deacetylase/N-sulfotransferase d	99.87
d1g3ma_		290	Estrogen sulfotransferase (STE, sult1e1) {Human (H	99.6
d3bfxa1		285	Sulfotransferase Sult1c2 {Human (Homo sapiens) [Ta	99.58
d1fmja_		342	Retinol dehydratase {Fall armyworm (Spodoptera fru	99.57
d2z5fa_		293	Thyroid hormone sulfotransferase Sult1b1 {Human (H	99.56
d1ls6a_		288	Aryl sulfotransferase sult1a {Human (Homo sapiens)	99.54
d1j99a_		284	Hydroxysteroid sulfotransferase sult2a1 {Human (Ho	99.53
d1q44a_		320	Putative steroid sulfotransferase rarO47 {Thale cr	99.52
d1q20a_		294	Cholesterol sulfotransferase sult2b1b {Human (Homo	99.44

>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine 3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: PAPS sulfotransferase
domain: Heparan sulfate glucosamine 3-O-sulfotransferase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.3e-24  Score=196.01  Aligned_cols=181  Identities=14%  Similarity=0.161  Sum_probs=112.2

Q ss_pred             CCCCcEEEEccCCchHHHHHHHHhcCcCCCCCCcccchhhhhcc--hhhhhhhcccc-hhhhccchhhccccccccchHH
Q 017911          128 NPVQYFAIISMQRSGSGWFETLLNSHMNVSSNGEIFSTLDTVYN--LDLFTSASKNE-CSAAVGFKWMLNQGLMQYHKEI  204 (364)
Q Consensus       128 ~p~~~F~Ilg~pRSGSTlL~~lLnsHP~V~~~gElf~~ld~~~~--~~w~~sa~~~~-~~~a~G~K~m~~q~~~~~~p~~  204 (364)
                      ...++|+|+|+||||||||.++|++||+|.+.++-...++..+.  .+|+.+..+.. .....|.+.    +..-..+..
T Consensus        15 ~~lP~~~IiG~pKsGTT~L~~iL~~Hp~i~~~~kE~~ff~~~~~~~~~~~~~~~~~~~~~~~~~e~s----p~y~~~~~~   90 (271)
T d1t8ta_          15 KQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEKT----PSYFVTREA   90 (271)
T ss_dssp             ECCCSEEEEECTTSSHHHHHHHHTTSTTEEECSSCCCTTTTSGGGHHHHHHHHSCEECTTCEEEEEC----GGGGGCTTH
T ss_pred             CCCCCEEEECCCCchHHHHHHHHHcCCCcccCCCccccccchhhhhhHHHHHHhhhccCCceeEecC----chhhcCchh
Confidence            33567999999999999999999999999987753333444432  45655321110 011223220    011111222


Q ss_pred             HHHh--hcCCcEEEEEeccChhHHHHHHHHhhhhHHHHHhcCccccccCChHHHHHhhccCCCCChHHHHHHHHHHHHHH
Q 017911          205 VEYF--NRRGVSVIFLFRRNLLRRLVSVLANSYDRYAKLLNGTHKSHVHSHQEAEALSRYKPAINSTLLIAELKEMELTA  282 (364)
Q Consensus       205 ~~~l--~~p~~kiI~L~RRNpLdravS~~~~~~~r~A~~~~g~h~~hv~s~~eA~~La~~kp~~d~~~Li~~l~~~~~~~  282 (364)
                      +..+  ..|++|+|++.| ||+++++|.+.+....      +...   .+.+++..........+.....-....|..++
T Consensus        91 ~~~i~~~~p~~kiI~i~R-dP~dr~~S~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~Y~~~l  160 (271)
T d1t8ta_          91 PARISAMSKDTKLIVVVR-DPVTRAISDYTQTLSK------RPDI---PTFESLTFKNRTAGLIDTSWSAIQIGIYAKHL  160 (271)
T ss_dssp             HHHHHHHCTTCEEEEEEC-CHHHHHHHHHHHHHHH------CTTS---CCHHHHHBCC---CCBCTTSHHHHTTCHHHHH
T ss_pred             hhhhhhhcccceEEEEeC-CHHHHHHHHHHHHHhc------CCCc---cCHHHHHHHHHHHhhhccchhhhcccHHHHHH
Confidence            2222  269999999988 9999999999865421      1111   12232211110111112221222223456778


Q ss_pred             HHHHHHcCCCCeEEEechhhhcCHHH-HHHHHHHhCCCCcC
Q 017911          283 AKAFEYFNSTRHIVLYYEDLVKNRKK-LKEVLEFLRLPQMK  322 (364)
Q Consensus       283 ~~~~~~f~~~~~l~V~YEDLv~dP~~-l~~Vl~FLGLp~~~  322 (364)
                      +.|.+.|++.++++|.||||++||+. +++|++||||++..
T Consensus       161 ~~~~~~f~~~~il~v~YEdL~~~p~~~l~ki~~FLgl~~~~  201 (271)
T d1t8ta_         161 EHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRII  201 (271)
T ss_dssp             HHHTTTSCGGGEEEEEHHHHHHCHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHcCcccchhhHHHHHHHhHHHHHHHHHHHcCCCccc
Confidence            88999998899999999999999999 99999999999753

PyMOL of d1t8ta_

>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium smegmatis [TaxId: 1772]}	Back information, alignment and structure

>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1nsta_ c.37.1.5 (A:) Heparan sulfate N-deacetylase/N-sulfotransferase domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g3ma_ c.37.1.5 (A:) Estrogen sulfotransferase (STE, sult1e1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3bfxa1 c.37.1.5 (A:12-296) Sulfotransferase Sult1c2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fmja_ c.37.1.5 (A:) Retinol dehydratase {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}	Back information, alignment and structure

>d1ls6a_ c.37.1.5 (A:) Aryl sulfotransferase sult1a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j99a_ c.37.1.5 (A:) Hydroxysteroid sulfotransferase sult2a1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q44a_ c.37.1.5 (A:) Putative steroid sulfotransferase rarO47 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1q20a_ c.37.1.5 (A:) Cholesterol sulfotransferase sult2b1b {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure