Citrus Sinensis ID: 017919

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MVFSSIPAYLDPANWQQQPNPQTGASTGVSTQFVQPQAPPPPPPQPHGSGGGGAGSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDILGLGPQIPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPVANELNFGGSLLSSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGGSAGQIRPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGNEHQYWSSTTAAGAAAAGWTDLSSFSSSSTSNPL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEcccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHccHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvfssipayldpanwqqqpnpqtgastgvstqfvqpqappppppqphgsggggagsirpgsmadrarmanvpmpeaalkcprcestntkfcyfnnyslsqprhfcKTCRrywtrggalrnvpvgggcrrnkrskggssgsskspvnstdrqtasgnnststmscnnsggasdilglgpqipqlrfmtpnlhhftsefpsgdiglnygsltappvanelnfggSLLSSLSGLDQWRLQQQAhhhqqfpflggldssssspsglypfeggveasgygvggsagqirpkisstGIVSQLAAAAapvkmeesshhhhqqQQEINLSRQFlgmqgnehqyWSSTTAAgaaaagwtdlssfsssstsnpl
Flexible Loop (DISEMBL)
MVFSSIPAYLDPANWQQQPNPQTGASTGVSTQFVQPQAPPPPPPQPHGSGGGGAGSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYfnnyslsqprhFCKTCRRYWTrggalrnvpvgggcrrnkrskggssgsskspvnstdrqtASGNNSTSTMSCNNSGGASDILGLGPQIPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPVANELNFGGSLLSSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGGSAGQIRPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGNEHQYWSSTTAAGAAAAGWTDlssfsssstsnpl
Low Complexity Region (SEG)
MVFSSIPAYLDPANWQQQPNPQTGASTGVSTQFVqpqappppppqphgsggggagsirpgsMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVgggcrrnkrskggssgssksPVNSTDRQTAsgnnststmscnnsggASDILGLGPQIPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPVANELNFggsllsslsglDQWRLqqqahhhqqfpflggldssssspsglypfeggveasgygvggsagQIRPKISSTGIVSQLAAAAAPVKMEESShhhhqqqqEINLSRQFLGMQGNEHQYwssttaagaaaagwTDLssfsssstsNPL
Disordered region (IsUnstruct)
*****************************************************************************LKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGG**********************************************ILGLGPQIPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPVANELNFGGSLLSSLSGLDQWRLQQQAHHHQQFPFL************************************************************************************QYWS***AA*AAAAGW***************
Disordered Region (DISOPRED)
*VFSSIPAYL**********************************************************************PRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN**********************************************************************************************************************************************************************************************************************YWSSTTAAGAAAAGWTD*************
Disordered Region (DISEMBL)
MVFSSIPAYLDPANWQQQPN************************************IRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCR***********************************CNNSGGASDILGLGPQIPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPVANELNFGGSLLSSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGGSAGQIRPKISSTGIV*************************INLSRQFLGMQGNEHQYWSSTTAAGAAAAGWTD*************
Disordered Region (DISPRO)
**FSSIPAY****NW*******************************************************VPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGC****************************************GGASDILGLGPQIPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPVANELNFGGSLLSSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEAS*Y*************************AAPVKMEE*********QEINLSRQFLGMQGNEHQYWSSTTAAGAAAAGWTDL************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFSSIPAYLDPANWQQQPNPQTGASTGVSTQFVQPQAPPPPPPQPHGSGGGGAGSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDILGLGPQIPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPVANELNFGGSLLSSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGGSAGQIRPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGNEHQYWSSTTAAGAAAAGWTDLSSFSSSSTSNPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
O80928	330	Dof zinc finger protein D	yes	no	0.846	0.933	0.430	2e-51
Q9LZ56	399	Dof zinc finger protein D	no	no	0.837	0.764	0.392	6e-48
Q9M2U1	323	Dof zinc finger protein D	no	no	0.766	0.863	0.428	5e-46
Q9ZV33	340	Dof zinc finger protein D	no	no	0.354	0.379	0.537	2e-36
Q8L9V6	331	Dof zinc finger protein D	no	no	0.744	0.818	0.380	4e-32
Q84TE9	257	Dof zinc finger protein D	no	no	0.192	0.272	0.714	3e-28
Q8LDR0	307	Dof zinc finger protein D	no	no	0.233	0.276	0.636	5e-28
Q9LSL6	316	Dof zinc finger protein D	no	no	0.239	0.275	0.595	1e-27
Q8LE43	288	Dof zinc finger protein D	no	no	0.156	0.197	0.859	7e-26
Q9M1E6	245	Dof zinc finger protein D	no	no	0.195	0.289	0.647	9e-26

>sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 163/379 (43%), Positives = 207/379 (54%), Gaps = 71/379 (18%)

Query: 1   MVFSSIPAYLDPANWQQQP-----NPQTGASTG------VSTQFVQPQAPPPPPPQPHGS 49
           MVFSSI AYLD +NWQQ P     +  TGAS           Q  Q     P P    G 
Sbjct: 1   MVFSSIQAYLDSSNWQQAPPSNYNHDGTGASANGGHVLRPQLQPQQQPQQQPHPNGSGGG 60

Query: 50  GGGGAGSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCR 109
           GGGG GSIR GSM DRAR ANV +PEAALKCPRCESTNTKFCYFNNYSL+QPRHFCKTCR
Sbjct: 61  GGGGGGSIRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCR 120

Query: 110 RYWTRGGALRNVPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNST-STMSCNNSG 168
           RYWTRGGALRNVPVGGGCRRN+R+K  S+ ++ S   S +   +SGN ST ST+  ++ G
Sbjct: 121 RYWTRGGALRNVPVGGGCRRNRRTKSNSNNNNNSTATSNNTSFSSGNASTISTILSSHYG 180

Query: 169 GASDILGLGPQIPQLRFMTPNLHHF-----TSEFPSGDIGLNYGSLTAPPVANELNFGGS 223
           G  + + L   +   R M P  +H       ++  +    LNYG L+       ++ G S
Sbjct: 181 GNQESI-LSQILSPARLMNPTYNHLGDLTSNTKTDNNMSLLNYGGLSQD--LRSIHMGAS 237

Query: 224 LLSSLSGLDQWRLQQQAHHHQQFPFLGG--LDSSSSSPS--GLYPFEGGVEASGYGVGGS 279
             S +S +D+WR    A +HQQ    GG   DSS+ +PS  G Y FE             
Sbjct: 238 GGSLMSCVDEWR---SASYHQQSSMGGGNLEDSSNPNPSANGFYSFES------------ 282

Query: 280 AGQIRPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGNEHQYWSST 339
                P+I+S  I S LA+  + VK+E++ +             +++ + GN        
Sbjct: 283 -----PRITSASISSALASQFSSVKVEDNPY-------------KWVNVNGN-------- 316

Query: 340 TAAGAAAAGWTDLSSFSSS 358
                  + W DLS+F SS
Sbjct: 317 ------CSSWNDLSAFGSS 329

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ56|DOF51_ARATH Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1

 Score =  191 bits (486), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 157/400 (39%), Positives = 198/400 (49%), Gaps = 95/400 (23%)

Query: 1   MVFSSIPAYLD-PANWQQQPNPQTGAS----TGVSTQFVQPQAPPPPPPQP-----HGSG 50
           MVFSS P Y D  +NWQQQ  P T         ++ QF+     PP   Q      H +G
Sbjct: 1   MVFSSFPTYPDHSSNWQQQHQPITTTVGFTGNNINQQFLPHHPLPPQQQQTPPQLHHNNG 60

Query: 51  GGGAGS-------IRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRH 103
            GG          IRPGSMA+RAR+AN+P+PE ALKCPRC+STNTKFCYFNNYSL+QPRH
Sbjct: 61  NGGVAVPGGPGGLIRPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRH 120

Query: 104 FCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGSSGSSKSPVNST----DRQTASGNNST 159
           FCK CRRYWTRGGALR+VPVGGGCRRNKR+K  S G   S  +      D  T++     
Sbjct: 121 FCKACRRYWTRGGALRSVPVGGGCRRNKRTKNSSGGGGGSTSSGNSKSQDSATSNDQYHH 180

Query: 160 STMSCNNSG---------------------------GASDILGLGPQIPQLRFMTPNLHH 192
             M+ N  G                             ++ILGLG  +P L         
Sbjct: 181 RAMANNQMGPPSSSSSLSSLLSSYNAGLIPGHDHNSNNNNILGLGSSLPPL--KLMPPLD 238

Query: 193 FTSEFPSGDIGLNYGSLTAPPVANELNFGGSLLSSLSGLDQWRLQQQAHHHQQFPFLGGL 252
           FT  F      L YG+++AP         G   + L+G DQWR         Q P LGGL
Sbjct: 239 FTDNFT-----LQYGAVSAPSYHIGGGSSGGAAALLNGFDQWRFPAT----NQLP-LGGL 288

Query: 253 DSSSSSPSGLYPFEGGVEAS----GYGVGGSAGQIRPK-----------ISSTGIVSQLA 297
           D          PF+   +      GYG+   +GQ RPK            +S+ +V+  A
Sbjct: 289 D----------PFDQQHQMEQQNPGYGLVTGSGQYRPKNIFHNLISSSSSASSAMVTATA 338

Query: 298 AAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGNEHQYWS 337
           +  A VKME+S++       ++NLSRQ     G+E Q W+
Sbjct: 339 SQLASVKMEDSNN-------QLNLSRQLF---GDEQQLWN 368

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  185 bits (470), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 144/336 (42%), Positives = 173/336 (51%), Gaps = 57/336 (16%)

Query: 1   MVFSSIPA-YLDPANWQQQPNPQ--TGASTGVSTQFVQPQAPPPPPPQPHGSGGGGAGSI 57
           MVFSS+P    D  NWQQQ N       +T  +      Q   PP  Q  GS        
Sbjct: 1   MVFSSLPVNQFDSQNWQQQGNQHQLECVTTDQNPNNYLRQLSSPPTSQVAGSSQA----- 55

Query: 58  RPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGA 117
           R  SM +RAR+A VP+PEAAL CPRC+STNTKFCYFNNYSL+QPRHFCKTCRRYWTRGG+
Sbjct: 56  RVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGS 115

Query: 118 LRNVPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDILGLG 177
           LRNVPVGGG RRNKRSK      SKS V  +   T S ++ TS  S +N    S     G
Sbjct: 116 LRNVPVGGGFRRNKRSK----SRSKSTVVVSTDNTTSTSSLTSRPSYSN---PSKFHSYG 168

Query: 178 PQIPQLRFMTPNLHHFTS--EFPSGDIGLNYGSLTAPPVANELNFGGSLLSSLSGLDQWR 235
            QIP+     P L    S  ++ S + GL++G      + + ++  G +      LD WR
Sbjct: 169 -QIPEFNSNLPILPPLQSLGDYNSSNTGLDFGGTQISNMISGMSSSGGI------LDAWR 221

Query: 236 L--QQQAHHHQQFPFLGGLDSSSSSPSGLYP-FEGGVEASGYGVGGSAGQIRPKISSTGI 292
           +   QQA   QQFPFL        S + LYP  EGGV         SA Q R        
Sbjct: 222 IPPSQQA---QQFPFLINTTGLVQSSNALYPLLEGGV---------SATQTR-------- 261

Query: 293 VSQLAAAAAPVKMEESSHHHHQQQQEI-NLSRQFLG 327
                     VK EE+     +    + NLSR FLG
Sbjct: 262 ---------NVKAEENDQDRGRDGDGVNNLSRNFLG 288

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV33|DOF22_ARATH Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana GN=DOF2.2 PE=2 SV=2

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 92/145 (63%), Gaps = 16/145 (11%)

Query: 1   MVFSSIPAYLDP-ANWQQQPNP----------QTGASTGVSTQFVQPQAPPPPPPQPHGS 49
           MVFSS+ ++LDP  NW Q  NP          + G+      Q +    P  P P  H  
Sbjct: 1   MVFSSVSSFLDPPINWPQSANPNNHPHHHQLQENGSLVSGHHQVLSHHFPQNPNPNHHHV 60

Query: 50  GGGGAGSIRPGSM----ADRARMA-NVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHF 104
               A ++ P S+    A+RAR+A N   PE ALKCPRC+S NTKFCYFNNY+L+QPRHF
Sbjct: 61  ETAAATTVDPSSLNGQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHF 120

Query: 105 CKTCRRYWTRGGALRNVPVGGGCRR 129
           CK CRRYWTRGGALRNVPVGGGCRR
Sbjct: 121 CKACRRYWTRGGALRNVPVGGGCRR 145

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9V6|DOF11_ARATH Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1 PE=1 SV=2

 Score =  139 bits (350), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 155/315 (49%), Gaps = 44/315 (13%)

Query: 37  QAPP----PPPPQPHGSGGGGAGSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCY 92
           Q PP    P P   H +   G  S   GSMA+RAR AN+P     LKCPRC+S+NTKFCY
Sbjct: 32  QLPPLQANPNPNHHHVATSAGLPSRMGGSMAERARQANIPPLAGPLKCPRCDSSNTKFCY 91

Query: 93  FNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRR-NKRSKGGSSGSSKSPVNSTDRQ 151
           +NNY+L+QPRHFCK CRRYWT+GGALRNVPVGGGCRR NK+ K G+  SS S        
Sbjct: 92  YNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKNGNLKSSSS-------- 143

Query: 152 TASGNNSTSTMSCNNSGGASDILGLGPQIPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTA 211
                +S  + S N    +S  L    Q P     +P L++ T     G IGLN  +   
Sbjct: 144 -----SSKQSSSVNAQSPSSGQLRTNHQFP----FSPTLYNLTQL---GGIGLNLAATNG 191

Query: 212 PPVANELNFGGSLLSSLSGLDQWR---LQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGG 268
              A+++  G SL+ S  G    R        + H+        ++  +S   L PF   
Sbjct: 192 NNQAHQI--GSSLMMSDLGFLHGRNTSTPMTGNIHENNNNNNNENNLMASVGSLSPFALF 249

Query: 269 VEASGYGVGGSAGQIRPKI----SSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQ 324
              +G     + G I   +    SST +V        PVKMEE       Q    NLSR 
Sbjct: 250 DPTTGLYAFQNDGNIGNNVGISGSSTSMVDSRVYQTPPVKMEE-------QPNLANLSRP 302

Query: 325 FLGMQ--GNE-HQYW 336
             G+   GN+ +QY+
Sbjct: 303 VSGLTSPGNQTNQYF 317

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 63/70 (90%)

Query: 74  PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRS 133
           PE AL+CPRC+STNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG LRN+PVGGGCR+NKRS
Sbjct: 51  PELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRS 110

Query: 134 KGGSSGSSKS 143
              ++ S ++
Sbjct: 111 TSSAARSLRT 120

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2

 Score =  125 bits (314), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 65  RARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVG 124
           RA   N+     +LKCPRC S NTKFCY+NNY+LSQPRHFCK CRRYWT+GG LRNVPVG
Sbjct: 38  RAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVG 97

Query: 125 GGCRRNKRSKGG---SSGSSKSPVNSTD 149
           GGCR+ KRSK     SS S+  P  + D
Sbjct: 98  GGCRKAKRSKTKQVPSSSSADKPTTTQD 125

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 68/94 (72%), Gaps = 7/94 (7%)

Query: 40  PPPPPQPHGSGGGGAGSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLS 99
           P P P+P     G + + +P S       ++V   +  LKCPRC S NTKFCY+NNYSLS
Sbjct: 10  PKPVPKPDHRISGTSQTKKPPS-------SSVAQDQQNLKCPRCNSPNTKFCYYNNYSLS 62

Query: 100 QPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRS 133
           QPRHFCK+CRRYWTRGGALRNVP+GGGCR+ K+S
Sbjct: 63  QPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 96

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LE43|DOF21_ARATH Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 49/57 (85%), Positives = 53/57 (92%)

Query: 77  ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRS 133
           A  CPRCES NTKFCY+NNYSLSQPR+FCK+CRRYWT+GG LRNVPVGGGCRRNKRS
Sbjct: 47  AQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRS 103

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E6|DOF32_ARATH Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2 PE=2 SV=1

 Score =  118 bits (295), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 59/71 (83%)

Query: 74  PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRS 133
           PE +L+CPRC+STNTKFCY+NNYSLSQPR+FCK+CRRYWT+GG LRN+P+GG  R++KRS
Sbjct: 36  PEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRS 95

Query: 134 KGGSSGSSKSP 144
              +     +P
Sbjct: 96  SSATKSLRTTP 106

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
224087405	326	f-box family protein [Populus trichocarp	0.813	0.907	0.614	7e-87
297740387	323	unnamed protein product [Vitis vinifera]	0.821	0.925	0.570	1e-85
225440336	333	PREDICTED: dof zinc finger protein DOF5.	0.868	0.948	0.569	2e-85
357469373	404	Dof zinc finger protein [Medicago trunca	0.895	0.806	0.525	3e-81
356527427	367	PREDICTED: dof zinc finger protein DOF2.	0.901	0.893	0.522	9e-74
147846631	338	hypothetical protein VITISV_020749 [Viti	0.876	0.943	0.527	1e-72
356566447	363	PREDICTED: dof zinc finger protein DOF2.	0.895	0.898	0.517	4e-72
255573611	338	zinc finger protein, putative [Ricinus c	0.846	0.911	0.568	3e-70
224113471	337	f-box family protein [Populus trichocarp	0.876	0.946	0.520	2e-69
225449501	338	PREDICTED: dof zinc finger protein DOF3.	0.881	0.949	0.514	2e-69

>gi|224087405|ref|XP_002308153.1| f-box family protein [Populus trichocarpa] gi|222854129|gb|EEE91676.1| f-box family protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 215/350 (61%), Positives = 242/350 (69%), Gaps = 54/350 (15%)

Query: 1   MVFSSIPAYLDPANWQQQPNPQTGASTGVSTQFVQPQAPPPPPPQPHGSGGGGAGSIRPG 60
           M FSSIPAYLDPANWQQQPN QTG S+  +TQ + P  PPPP  QPHGSGG  AGSIRPG
Sbjct: 1   MDFSSIPAYLDPANWQQQPNHQTGVSSSTATQHLPPPPPPPP--QPHGSGG--AGSIRPG 56

Query: 61  SMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 120
           SMADRARMAN+P+PE ALKCPRCESTNTKFCYFNNYSL+QPRHFCKTCRRYWTRGGALR+
Sbjct: 57  SMADRARMANIPLPEPALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRS 116

Query: 121 VPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDILGLGPQI 180
           VPVGGGCRRNKRSK  SS S  S    T   ++S  +S S          SD  GLGPQ+
Sbjct: 117 VPVGGGCRRNKRSKESSSKSPISGYRQTGSCSSSTVSSNSG--------TSDTFGLGPQV 168

Query: 181 PQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPV--ANELNFG-GSLL------------ 225
           P +RFM P LHH T EF SG+IGLNYG+L+   V  A++LNF  GS L            
Sbjct: 169 PPMRFMAP-LHHHT-EFASGNIGLNYGALSKTLVGGASDLNFQMGSALASAGLGGNGGAG 226

Query: 226 ---SSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGGSAGQ 282
               S+ G DQWR+QQ     QQ PFLGGLDSS+   SGLYPFEGG E SGY  GG A  
Sbjct: 227 GSLLSMGGFDQWRMQQG----QQLPFLGGLDSSA---SGLYPFEGGAEPSGY--GGGADH 277

Query: 283 IRPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGNE 332
           IRPKISS+      A   A VKME++        QE+N+SRQFLG+ GN+
Sbjct: 278 IRPKISSS-----TATPLASVKMEDN--------QELNMSRQFLGIPGND 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740387|emb|CBI30569.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 202/354 (57%), Positives = 242/354 (68%), Gaps = 55/354 (15%)

Query: 1   MVFSSIPAYLDPANWQQQPNPQTGASTGVSTQFVQPQAPPPPPPQPHGSGGGGAGSIRPG 60
           MVFSS+P+YLDPANWQQ  N + G S+G+  Q   P  P      P   GGGG GSIRPG
Sbjct: 1   MVFSSMPSYLDPANWQQPHNHEAG-SSGLPNQPPPPPPP-----PPQPHGGGGTGSIRPG 54

Query: 61  SMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 120
           SMADRAR+AN+P+PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN
Sbjct: 55  SMADRARLANIPLPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 114

Query: 121 VPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDILGLGPQI 180
           VPVGGGCRRNKR    S GSS     S DRQ  +G++ST  +  N S   ++ILGL PQI
Sbjct: 115 VPVGGGCRRNKR----SKGSSSKSPVSGDRQ--AGSSSTGAIHSNCS--TAEILGLAPQI 166

Query: 181 PQLRFMTPNLHHFTSEFPSGDIGLNYGSL-TAPPVANELNFGGSLLSSLSGLDQWRLQQQ 239
           P +RFM P LHH  +++ +GDIGLNY  + TA     ++NF       +  L+QWRLQQ 
Sbjct: 167 PPMRFMAP-LHHL-ADYGAGDIGLNYSGIPTAVGGTGDMNF------QIGSLEQWRLQQT 218

Query: 240 AHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGGSAGQIRPKISSTGIVSQLAAA 299
               QQFPFLGGLD     P GLYP EGGVE S Y VGGS+ Q+RPK++ +G+ SQ+A+ 
Sbjct: 219 ----QQFPFLGGLD----PPPGLYPLEGGVEPSNY-VGGSS-QVRPKLTGSGL-SQVAS- 266

Query: 300 AAPVKMEESSHHHHQQQQEINLSRQFLGMQGNEHQYWSSTTAAGAAAAGWTDLS 353
              VKME++         E+N++RQFLG+ GN+ QYW            WTDL+
Sbjct: 267 ---VKMEDN--------HEMNVARQFLGIPGND-QYWGGNA--------WTDLA 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440336|ref|XP_002270031.1| PREDICTED: dof zinc finger protein DOF5.1-like [Vitis vinifera]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 217/381 (56%), Positives = 258/381 (67%), Gaps = 65/381 (17%)

Query: 1   MVFSSIPAYLDPANWQQQPNPQTGASTGVSTQFVQPQAPPPPPPQPHGSGGGGAGSIRPG 60
           MVFSS+P+YLDPANWQQ  N + G S+G+  Q   P  P      P   GGGG GSIRPG
Sbjct: 1   MVFSSMPSYLDPANWQQPHNHEAG-SSGLPNQPPPPPPP-----PPQPHGGGGTGSIRPG 54

Query: 61  SMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 120
           SMADRAR+AN+P+PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN
Sbjct: 55  SMADRARLANIPLPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 114

Query: 121 VPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDILGLGPQI 180
           VPVGGGCRRNKRSKG SS S      S DRQ  +G++ST  +  N S   ++ILGL PQI
Sbjct: 115 VPVGGGCRRNKRSKGSSSKSPV----SGDRQ--AGSSSTGAIHSNCS--TAEILGLAPQI 166

Query: 181 PQLRFMTPNLHHFTSEFPSGDIGLNYGSL-TAPPVANELNF----------------GGS 223
           P +RFM P LHH  +++ +GDIGLNY  + TA     ++NF                 G 
Sbjct: 167 PPMRFMAP-LHHL-ADYGAGDIGLNYSGIPTAVGGTGDMNFQIGSHLGGGSSGGAGGVGG 224

Query: 224 LLSSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGGSAGQI 283
              S+ GL+QWRLQQ     QQFPFLGGLD     P GLYP EGGVE S Y VGGS+ Q+
Sbjct: 225 SFLSVGGLEQWRLQQT----QQFPFLGGLD----PPPGLYPLEGGVEPSNY-VGGSS-QV 274

Query: 284 RPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGNEHQYWSSTTAAG 343
           RPK++ +G+ SQ+A+    VKME++         E+N++RQFLG+ GN+ QYW       
Sbjct: 275 RPKLTGSGL-SQVAS----VKMEDN--------HEMNVARQFLGIPGND-QYWGGNA--- 317

Query: 344 AAAAGWTDLSSFSSSSTSNPL 364
                WTDL+SFSSSSTS+PL
Sbjct: 318 -----WTDLASFSSSSTSHPL 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469373|ref|XP_003604971.1| Dof zinc finger protein [Medicago truncatula] gi|355506026|gb|AES87168.1| Dof zinc finger protein [Medicago truncatula]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 196/373 (52%), Positives = 240/373 (64%), Gaps = 47/373 (12%)

Query: 1   MVFSSIPA-YLDPANWQQQPN-----PQTGASTGVSTQFVQPQAPPPPPPQPHGSGGGGA 54
           MVF+SIPA YLD ANWQQQ       P  G S        Q   P     QPHG  GG  
Sbjct: 1   MVFTSIPAAYLDAANWQQQQQNHHQQPGNGGSVSQQLLQTQTPPPQQSQSQPHG--GGST 58

Query: 55  GSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR 114
           GSIRPGSM+DRARMAN+PMPE ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR
Sbjct: 59  GSIRPGSMSDRARMANMPMPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR 118

Query: 115 GGALRNVPVGGGCRRNKR--SKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASD 172
           GGALRNVPVGGG RRNKR      +  S+KSP  S+DRQT S +++ S  S NN   ++D
Sbjct: 119 GGALRNVPVGGGFRRNKRSSKSSNNGNSTKSPA-SSDRQTGSASSTNSITSNNNIHSSAD 177

Query: 173 ILGLGPQIPQLRFMTPNLHHFT--SEFP-SGDIGLNYGSLTAPPVANELN-FGGSLLSSL 228
           ILGL PQ+  LRFMTP  H+F+  ++F   GD+GLNYG      V +  +  GG+ + S 
Sbjct: 178 ILGLTPQMSSLRFMTPLHHNFSNPNDFVGGGDLGLNYGFSYMGGVGDLGSALGGNSILSS 237

Query: 229 SGLDQWRL-QQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGGSAGQIRPK- 286
           SGL+QWR+     H   QFPFL  L+ ++S+   LYPFEG V+   + +  S G +RPK 
Sbjct: 238 SGLEQWRMPMSMTHQQHQFPFLANLEGTNSN---LYPFEGNVQ--NHEMITSGGYVRPKV 292

Query: 287 ISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGM--------QGNEHQYWSS 338
           IS++GI++QLA+    VKME+S            ++R FLG+        QG+E Q+W+S
Sbjct: 293 ISTSGIMTQLAS----VKMEDS------------INRGFLGINTSNNNSNQGSE-QFWNS 335

Query: 339 TTAAGAAAAGWTD 351
               G +AA WTD
Sbjct: 336 AVVTGNSAANWTD 348

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527427|ref|XP_003532312.1| PREDICTED: dof zinc finger protein DOF2.4-like [Glycine max]

 Score =  283 bits (724), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 197/377 (52%), Positives = 237/377 (62%), Gaps = 49/377 (12%)

Query: 1   MVFSSIPAYLDPANWQQQPNPQTGAS--TGVSTQFV---QPQAPPPPPPQPHGSGGGG-A 54
           MV++SIPAY+DPANWQQQ          T  S+  +     Q P PPP QPHG GG   A
Sbjct: 1   MVYTSIPAYIDPANWQQQQPNHQQQGNNTAASSHLILPQPIQPPQPPPSQPHGLGGSTTA 60

Query: 55  GSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR 114
           GSIRPGSMADRARMAN+PM EA  KCPRCESTNTKFCYFNNYSLSQPRHFCK CRRYWTR
Sbjct: 61  GSIRPGSMADRARMANIPMQEAQQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTR 120

Query: 115 GGALRNVPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDIL 174
           GGALRNVPVGGGCRRNKRS+G S  +++SP NS DRQTAS  ++++T   +++   + + 
Sbjct: 121 GGALRNVPVGGGCRRNKRSRGSSGNNTRSPANS-DRQTASAGSASTTSGSSSADLVAGLG 179

Query: 175 GLGPQIPQLRFMTPNLHH---------FTSEFPSGDIGLNYGSLTAPPVA-NELNF---- 220
           G     P LRFM P LH                    GLNYG+++ P     +LNF    
Sbjct: 180 GGTGVPPSLRFMAP-LHQLGDHHHHLGGGGGEIGLSYGLNYGAISGPMGGIGDLNFHIGG 238

Query: 221 --GGSLLSSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGG 278
              G   S LSGL+QWR+ Q      QFPFL GL+++SS   GLYPFEG   + GY    
Sbjct: 239 SLSGGGCSMLSGLEQWRVPQT----HQFPFLSGLEATSS--HGLYPFEGASGSDGY---- 288

Query: 279 SAGQIRPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGN---EHQY 335
             G    K+S++G++SQLA+    VKME++ HHHH   QE+ L RQFLG+  N     QY
Sbjct: 289 --GSTPIKVSTSGVMSQLAS----VKMEDNHHHHH---QELGLPRQFLGVNNNPSTNEQY 339

Query: 336 WSSTTAAGAAAAGWTDL 352
           WS     G A + WTDL
Sbjct: 340 WS---GGGGATSAWTDL 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846631|emb|CAN79495.1| hypothetical protein VITISV_020749 [Vitis vinifera]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 202/383 (52%), Positives = 239/383 (62%), Gaps = 64/383 (16%)

Query: 1   MVFSSIPAYLDPANWQQQPNPQTGASTGVSTQFVQPQAPPPPPPQPHGSGGGGAGSIRPG 60
           MVFSS+P YLDP NWQQQ N Q G S       + PQ  PPP P   G G GG G+IRPG
Sbjct: 1   MVFSSVPVYLDPPNWQQQANHQPGGSN--DNPHLPPQQAPPPLPPVGGGGSGGTGTIRPG 58

Query: 61  SMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 120
           SMADRAR+A +P PE ALKCPRCESTNTKFCYFNNYSLSQPRHFCK CRRYWTRGGALRN
Sbjct: 59  SMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 118

Query: 121 VPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDILG---LG 177
           VPVGGGCRRNKRSKG     SKSPV    +  +S  ++  + SC      SD++G     
Sbjct: 119 VPVGGGCRRNKRSKG---NRSKSPVTGERQGGSSSASAVPSNSC-----TSDMIGHLPPP 170

Query: 178 PQIPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPVA--------NELNF-------GG 222
           P  PQL F+ P LHH  +++ +GDIGLN+G +  PPVA         ++ F       GG
Sbjct: 171 PPPPQLSFL-PXLHHL-ADYGAGDIGLNFGGIQ-PPVAVSGGGNSGTDIEFPIGSCSGGG 227

Query: 223 SLLSSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEG-GVEASGYGVGGSAG 281
             + S    +QWRLQQ     QQFPFL GL+     PSGLY FEG G E   Y +GGS G
Sbjct: 228 GPILSGGLAEQWRLQQV----QQFPFLAGLE----PPSGLYSFEGEGTEPPSY-LGGS-G 277

Query: 282 QIRPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGNEHQYWSSTTA 341
            +R K   +G V+Q+ A    VK+EE+        Q +NLSR FLG+ GN+ QYWS  T 
Sbjct: 278 HLRAKALDSG-VTQMTA----VKIEEN--------QGLNLSRNFLGLPGND-QYWSGNT- 322

Query: 342 AGAAAAGWTDLSSFSSSSTSNPL 364
                  W DLS F+SS+TS+ L
Sbjct: 323 -------WNDLSGFNSSTTSHLL 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566447|ref|XP_003551443.1| PREDICTED: dof zinc finger protein DOF2.4-like [Glycine max]

 Score =  278 bits (710), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 194/375 (51%), Positives = 234/375 (62%), Gaps = 49/375 (13%)

Query: 1   MVFSSIPAYLDPANWQQQPNPQ------TGASTGVSTQFVQPQAPPPPPPQPHGSGGGGA 54
           MV++SIP+Y+DPANWQQQ          T AS+ +         PPPP      SG   A
Sbjct: 1   MVYTSIPSYIDPANWQQQQPNHQQQGNNTAASSHLILPPPIQPPPPPPSQPHGLSGSTTA 60

Query: 55  GSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR 114
           GSIRPGSMADRARMAN+   EA  KCPRCESTNTKFCYFNNYSLSQPRHFCK CRRYWTR
Sbjct: 61  GSIRPGSMADRARMANIQ--EAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTR 118

Query: 115 GGALRNVPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDIL 174
           GG LRNVPVGGGCRRNKRS+G SS +++SP NS DRQTAS  ++++T   +++   + + 
Sbjct: 119 GGTLRNVPVGGGCRRNKRSRGSSSSNTRSPANS-DRQTASAGSASTTSGSSSADLVASLG 177

Query: 175 GLGPQIPQLRFMTPNLHH--------FTSEFPSGDIGLNYGSLTAPPVA-NELNF--GGS 223
           G     P LRFM P LH                   GLNYG+++ P     +LNF  GG+
Sbjct: 178 GGTGVPPSLRFMAP-LHQLGDHHHLGGGGGEIGLSYGLNYGAISGPMGGIGDLNFHIGGT 236

Query: 224 LL---SSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGGSA 280
           L    S LSGLDQWR+ Q      QFPFL GL+++SS   GLYPFEG   + GY      
Sbjct: 237 LSGGGSMLSGLDQWRVPQT----HQFPFLSGLEATSS--HGLYPFEGASGSDGY------ 284

Query: 281 GQIRPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGN---EHQYWS 337
           G    K+S++GI+SQLA+    VKME++ HHHH   QE+ L RQFLG+  N     QYWS
Sbjct: 285 GGTPIKVSTSGIISQLAS----VKMEDNRHHHH---QELGLPRQFLGVNNNPNTNEQYWS 337

Query: 338 STTAAGAAAAGWTDL 352
                G A + WTDL
Sbjct: 338 ---GGGGATSTWTDL 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573611|ref|XP_002527728.1| zinc finger protein, putative [Ricinus communis] gi|223532869|gb|EEF34641.1| zinc finger protein, putative [Ricinus communis]

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 224/394 (56%), Positives = 254/394 (64%), Gaps = 86/394 (21%)

Query: 1   MVFSSIPAYLDPANWQQ---QPNP------QTGASTGVSTQFVQPQAPPPPPPQPHGS-- 49
           MVFSS+PAYLDPANWQQ   QPN       Q GASTG +   + P  PPPPPP P     
Sbjct: 1   MVFSSLPAYLDPANWQQRVRQPNHHHHHHHQPGASTGANAHLIPPTPPPPPPPPPPPPPH 60

Query: 50  GGGGAGSIRPGSMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCR 109
           G GGAGSIRPGSMADRAR+AN+P                   YFNNYSL+QPRHFCKTCR
Sbjct: 61  GSGGAGSIRPGSMADRARLANIPX------------------YFNNYSLTQPRHFCKTCR 102

Query: 110 RYWTRGGALRNVPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGG 169
           RYWTRGGALRNVPVGGGCRRNKRSKG SS  S     S+DRQTASG +ST + S     G
Sbjct: 103 RYWTRGGALRNVPVGGGCRRNKRSKGSSSSKSPV---SSDRQTASGTSSTLSSS-----G 154

Query: 170 ASDILGLGPQIPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPP-VANELNF--GGSLLS 226
            SDILGLGPQ+P LRFM P LHH  +E+   DIGLNYG+L+AP    ++LNF  G +L S
Sbjct: 155 TSDILGLGPQVPPLRFMAP-LHHL-NEYAPCDIGLNYGALSAPVGGTSDLNFQIGSALAS 212

Query: 227 ---------------SLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEA 271
                          S+ GL+QWRLQQ     QQFPFLGGLD SSS  +GLYPFEGG E 
Sbjct: 213 TGLGGGSGVAGGSLLSMGGLEQWRLQQ----GQQFPFLGGLDPSSS--AGLYPFEGGAEP 266

Query: 272 SGYGVGGSAGQIRPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQG- 330
           SG   GG  GQ+RP+ +ST + +Q A+    VKME++         E+NLSRQFLG+   
Sbjct: 267 SG-YGGGIGGQVRPR-TSTSLTTQFAS----VKMEDN--------HELNLSRQFLGINNP 312

Query: 331 NEHQYWSSTTAAGAAAAGWTDLSSFSSSSTSNPL 364
              QYWSST         WTDLSSFSSSSTSNPL
Sbjct: 313 GSDQYWSSTA--------WTDLSSFSSSSTSNPL 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113471|ref|XP_002332583.1| f-box family protein [Populus trichocarpa] gi|222832921|gb|EEE71398.1| f-box family protein [Populus trichocarpa]

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 199/382 (52%), Positives = 230/382 (60%), Gaps = 63/382 (16%)

Query: 1   MVFSSIPAYLDPANWQQQPNPQTGASTGVSTQFVQPQAPPPPPPQPHGSGGGGAGSIRPG 60
           MVFSSIP YLDP NWQQQ N Q  A  G   +  Q   P  PP      GG  AGSIRPG
Sbjct: 1   MVFSSIPVYLDPPNWQQQHNNQPPA--GAGNENPQLPPPSGPPTGGGDGGGTTAGSIRPG 58

Query: 61  SMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 120
           SM DRAR+A +P+PE ALKCPRCESTNTKFCYFNNYSL+QPRHFCKTCRRYWTRGGALRN
Sbjct: 59  SMTDRARLAKIPLPEMALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRN 118

Query: 121 VPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDILGLGPQI 180
           VPVGGGCRRNKRSKG  SG SKSPV +    +   +++  T         +DI G     
Sbjct: 119 VPVGGGCRRNKRSKG--SGRSKSPVKAGSSSSGGLSSNGGT---------TDITGNMTTP 167

Query: 181 PQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPVANEL-----------------NFGGS 223
           P L  + P LHH   ++ S DIGLN+G +  P V                     + GGS
Sbjct: 168 PPLLPIFPPLHHL-GDYNSPDIGLNFGGI-LPSVGATAGGGGGVEFQMENSTSSNSVGGS 225

Query: 224 LLSSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEGGVEASGYGVGGSAGQI 283
           +LSS   ++QWRLQQ  H  QQ+PFL  L+ S    SGLY FEGG    G G    AGQI
Sbjct: 226 VLSS-GLVEQWRLQQVQHQVQQYPFLSNLEPS----SGLYSFEGG----GIGPSNYAGQI 276

Query: 284 RPK-ISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGNEHQYWSSTTAA 342
           R + + STG VSQLA+    VKME +        Q +NLSR FLG+ GN+ QYW    A 
Sbjct: 277 RSRPLDSTG-VSQLAS----VKMEGN--------QGLNLSRNFLGISGND-QYWGGNNA- 321

Query: 343 GAAAAGWTDLSSFSSSSTSNPL 364
                 WTDL  F+SSSTS+ L
Sbjct: 322 ------WTDLPGFTSSSTSHLL 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449501|ref|XP_002278642.1| PREDICTED: dof zinc finger protein DOF3.6 [Vitis vinifera]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 196/381 (51%), Positives = 233/381 (61%), Gaps = 60/381 (15%)

Query: 1   MVFSSIPAYLDPANWQQQPNPQTGASTGVSTQFVQPQAPPPPPPQPHGSGGGGAGSIRPG 60
           MVFSS+P YLDP NWQQQ N Q G S       + PQ  PPP P   G G GG G+IRPG
Sbjct: 1   MVFSSVPVYLDPPNWQQQANHQPGGSN--DNPHLPPQQAPPPLPPVGGGGSGGTGTIRPG 58

Query: 61  SMADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 120
           SMADRAR+A +P PE ALKCPRCESTNTKFCYFNNYSLSQPRHFCK CRRYWTRGGALRN
Sbjct: 59  SMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 118

Query: 121 VPVGGGCRRNKRSKGGSSGSSKSPVNSTDRQTASGNNSTSTMSCNNSGGASDILG-LGPQ 179
           VPVGGGCRRNKRSKG     SKSPV    +  +S  ++  + SC      SD++G L P 
Sbjct: 119 VPVGGGCRRNKRSKG---NRSKSPVTGERQGGSSSASAVPSNSC-----TSDMIGHLPPP 170

Query: 180 IPQLRFMTPNLHHFTSEFPSGDIGLNYGSLTAPPVA--------NELNF-------GGSL 224
            P  +       H  +++ +GDIGLN+G +  PPVA         ++ F       GG  
Sbjct: 171 PPPPQLSFLPPLHHLADYGAGDIGLNFGGIQ-PPVAVSGGGNSGTDIEFPIGSCSGGGGP 229

Query: 225 LSSLSGLDQWRLQQQAHHHQQFPFLGGLDSSSSSPSGLYPFEG-GVEASGYGVGGSAGQI 283
           + S    + WRLQQ     QQFPFL GL+     PSGLY FEG G E   Y +GGS G +
Sbjct: 230 ILSGGLAEHWRLQQV----QQFPFLAGLE----PPSGLYSFEGEGTEPPSY-LGGS-GHL 279

Query: 284 RPKISSTGIVSQLAAAAAPVKMEESSHHHHQQQQEINLSRQFLGMQGNEHQYWSSTTAAG 343
           R K   +G V+Q+ A    VK+EE+        Q +NLSR FLG+ GN+ QYWS  T   
Sbjct: 280 RAKALDSG-VTQMTA----VKIEEN--------QGLNLSRNFLGLPGND-QYWSGNT--- 322

Query: 344 AAAAGWTDLSSFSSSSTSNPL 364
                W DLS F+SS+TS+ L
Sbjct: 323 -----WNDLSGFNSSTTSHLL 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:2181773	399	AT5G02460 [Arabidopsis thalian	0.170	0.155	0.854	9.7e-46
TAIR|locus:2040746	330	DOF2.4 "DNA binding with one f	0.472	0.521	0.407	1.2e-40
TAIR|locus:2026595	339	OBP2 [Arabidopsis thaliana (ta	0.170	0.182	0.758	3.5e-31
TAIR|locus:2053175	340	AT2G28810 [Arabidopsis thalian	0.337	0.361	0.467	1.5e-26
TAIR|locus:2085697	245	DOF6 "DOF transcription factor	0.137	0.204	0.78	3.9e-24
TAIR|locus:2056588	288	AT2G28510 [Arabidopsis thalian	0.129	0.163	0.829	1.4e-22
TAIR|locus:2079492	324	DAG1 "dof affecting germinatio	0.137	0.154	0.76	1.8e-22
TAIR|locus:2121041	246	DOF4.7 "DNA binding with one f	0.142	0.211	0.788	4.3e-22
TAIR|locus:2032153	325	AT1G28310 [Arabidopsis thalian	0.137	0.153	0.82	5.5e-22
TAIR|locus:2144030	257	TMO6 "TARGET OF MONOPTEROS 6"	0.137	0.194	0.8	5.5e-22

TAIR|locus:2181773 AT5G02460 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.7e-46, Sum P(4) = 9.7e-46
 Identities = 53/62 (85%), Positives = 60/62 (96%)

Query:    62 MADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNV 121
             MA+RAR+AN+P+PE ALKCPRC+STNTKFCYFNNYSL+QPRHFCK CRRYWTRGGALR+V
Sbjct:    79 MAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSV 138

Query:   122 PV 123
             PV
Sbjct:   139 PV 140

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2040746 DOF2.4 "DNA binding with one finger 2.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
 Identities = 73/179 (40%), Positives = 87/179 (48%)

Query:    62 MADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNV 121
             M DRAR ANV +PEAALKCPRCESTNTKFCYFNNYSL+QPRHFCKTCRRYWTRGGALRNV
Sbjct:    73 MVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNV 132

Query:   122 PVXXXXXXXXXXXXXXXXXXXXPVNSTDRQTAXXXXXXXXXXXXXXXXASDILGLGPQIP 181
             PV                       S +   +                 +    L   + 
Sbjct:   133 PVGGGCRRNRRTKSNSNNNNNSTATSNNTSFSSGNASTISTILSSHYGGNQESILSQILS 192

Query:   182 QLRFMTPNLHHF---TSEFPS-GDIGL-NYGSLTAPPVANELNFXXXXXXXXXXXDQWR 235
               R M P  +H    TS   +  ++ L NYG L+       ++            D+WR
Sbjct:   193 PARLMNPTYNHLGDLTSNTKTDNNMSLLNYGGLSQD--LRSIHMGASGGSLMSCVDEWR 249

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2026595 OBP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 3.5e-31, Sum P(3) = 3.5e-31
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query:    62 MADRARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNV 121
             MA+RAR AN+P     LKCPRC+S+NTKFCY+NNY+L+QPRHFCK CRRYWT+GGALRNV
Sbjct:    69 MAERARQANIPPLAGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNV 128

Query:   122 PV 123
             PV
Sbjct:   129 PV 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009625 "response to insect" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0003002 "regionalization" evidence=IMP

TAIR|locus:2053175 AT2G28810 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 65/139 (46%), Positives = 77/139 (55%)

Query:     1 MVFSSIPAYLDPA-NWQQQPNP----------QTGASTGVSTQFVXXXXXXXXXXXXXXX 49
             MVFSS+ ++LDP  NW Q  NP          + G+      Q +               
Sbjct:     1 MVFSSVSSFLDPPINWPQSANPNNHPHHHQLQENGSLVSGHHQVLSHHFPQNPNPNHHHV 60

Query:    50 XXXXXXXXXXXXM----ADRARMA-NVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHF 104
                         +    A+RAR+A N   PE ALKCPRC+S NTKFCYFNNY+L+QPRHF
Sbjct:    61 ETAAATTVDPSSLNGQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHF 120

Query:   105 CKTCRRYWTRGGALRNVPV 123
             CK CRRYWTRGGALRNVPV
Sbjct:   121 CKACRRYWTRGGALRNVPV 139

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2085697 DOF6 "DOF transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 39/50 (78%), Positives = 48/50 (96%)

Query:    74 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 123
             PE +L+CPRC+STNTKFCY+NNYSLSQPR+FCK+CRRYWT+GG LRN+P+
Sbjct:    36 PEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPI 85

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2056588 AT2G28510 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 39/47 (82%), Positives = 43/47 (91%)

Query:    77 ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 123
             A  CPRCES NTKFCY+NNYSLSQPR+FCK+CRRYWT+GG LRNVPV
Sbjct:    47 AQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPV 93

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2079492 DAG1 "dof affecting germination 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query:    74 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 123
             P+  + CPRC STNTKFCY+NNYSL+QPR+FCK CRRYWT GG+LRNVPV
Sbjct:    70 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPV 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009639 "response to red or far red light" evidence=IMP

TAIR|locus:2121041 DOF4.7 "DNA binding with one finger 4.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 41/52 (78%), Positives = 46/52 (88%)

Query:    72 PMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 123
             P  +  LKCPRC+S NTKFCY+NNYSLSQPRH+CK CRRYWTRGGALRNVP+
Sbjct:    35 PATQPVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGALRNVPI 86

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010227 "floral organ abscission" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2032153 AT1G28310 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 41/50 (82%), Positives = 46/50 (92%)

Query:    74 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 123
             P+  LKCPRC+S+NTKFCY+NNYSLSQPRHFCK C+RYWTRGG LRNVPV
Sbjct:    37 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPV 86

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2144030 TMO6 "TARGET OF MONOPTEROS 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 40/50 (80%), Positives = 48/50 (96%)

Query:    74 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 123
             PE AL+CPRC+STNTKFCY+NNYSL+QPR+FCK+CRRYWT+GG LRN+PV
Sbjct:    51 PELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPV 100

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048364 "root development" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80928	DOF24_ARATH	No assigned EC number	0.4300	0.8461	0.9333	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021306001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (327 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	364
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	6e-40

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  135 bits (341), Expect = 6e-40
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 74  PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRS 133
           P+ ALKCPRC+S NTKFCY+NNY+L+QPR+FCK CRRYWT GGALRNVPVGGG R+NKRS
Sbjct: 2   PDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKRS 61

Query: 134 KG 135
             
Sbjct: 62  SS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	94.43
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	92.37
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	91.74
COG3677	129	Transposase and inactivated derivatives [DNA repli	91.61
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	88.76
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	86.84
PHA02998	195	RNA polymerase subunit; Provisional	80.3

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=4.2e-37  Score=237.46  Aligned_cols=63  Identities=78%  Similarity=1.559  Sum_probs=60.3

Q ss_pred             CCccCcCCCCCCCCCcceeeecCCCCCCCcccccccccccccCccccccccCCccccCCCCCC
Q 017919           73 MPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKG  135 (364)
Q Consensus        73 ~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~GG~lRnVPvGgG~Rknkrs~~  135 (364)
                      .||+.++||||+|+||||||||||+++|||||||+|+||||+||+||||||||||||+|++++
T Consensus         1 ~~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    1 KPEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CCccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            478999999999999999999999999999999999999999999999999999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=94.43  E-value=0.023  Score=50.63  Aligned_cols=34  Identities=24%  Similarity=0.694  Sum_probs=27.6

Q ss_pred             CcCCCCCCCCCcceeeecCCCC--CCCccccccccccc
Q 017919           77 ALKCPRCESTNTKFCYFNNYSL--SQPRHFCKTCRRYW  112 (364)
Q Consensus        77 ~~~CPRC~S~~Tkfcy~NNy~~--~QPR~fCk~CrRyW  112 (364)
                      ...||||.|.+|+.  .+.|-.  ++.-|+|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~--~s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTI--TSIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEe--ecCCCChhhHHHhhhhhhCCcH
Confidence            48999999999997  577744  57779999998643

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=92.37  E-value=0.082  Score=37.45  Aligned_cols=31  Identities=42%  Similarity=0.754  Sum_probs=22.1

Q ss_pred             CcCCCCCCCCCcceeeecCCCC-CCCcccccccc
Q 017919           77 ALKCPRCESTNTKFCYFNNYSL-SQPRHFCKTCR  109 (364)
Q Consensus        77 ~~~CPRC~S~~Tkfcy~NNy~~-~QPR~fCk~Cr  109 (364)
                      .+.||+|.+++.=  |=|-.+. -..||+|++|+
T Consensus         5 ~v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    5 DVHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            5789999998821  1344443 35899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=91.74  E-value=0.21  Score=36.08  Aligned_cols=38  Identities=32%  Similarity=0.761  Sum_probs=27.2

Q ss_pred             hhhhcCCCCccCcCCCCCCCCCcceeeecCCCCCCCccccccccc
Q 017919           66 ARMANVPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRR  110 (364)
Q Consensus        66 ar~a~~p~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrR  110 (364)
                      .-++.+-=|+. ..||+|.+.  ++..+.+    ..++.|++|++
T Consensus         8 ~~l~~~RW~~g-~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen    8 EYLEEIRWPDG-FVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             HHHHHhcCCCC-CCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            33444444554 669999998  6655655    78899999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=91.61  E-value=0.13  Score=45.05  Aligned_cols=36  Identities=31%  Similarity=0.652  Sum_probs=28.6

Q ss_pred             CcCCCCCCCCCcceeeecCCCCCCCccccccccccccc
Q 017919           77 ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR  114 (364)
Q Consensus        77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~  114 (364)
                      ...||+|.+.+.+  =++-+.....|+.|++|++=|+.
T Consensus        30 ~~~cP~C~s~~~~--k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          30 KVNCPRCKSSNVV--KIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             cCcCCCCCcccee--eECCccccccccccCCcCcceee
Confidence            4789999999922  25555566999999999998874

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=88.76  E-value=0.43  Score=34.06  Aligned_cols=37  Identities=24%  Similarity=0.719  Sum_probs=28.3

Q ss_pred             cCCCCCCCCCcceeeecCCCCCCC---ccccccccccccc
Q 017919           78 LKCPRCESTNTKFCYFNNYSLSQP---RHFCKTCRRYWTR  114 (364)
Q Consensus        78 ~~CPRC~S~~Tkfcy~NNy~~~QP---R~fCk~CrRyWT~  114 (364)
                      .+||+|...+.-|-..+-.+...|   -|.|.+|...|.+
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            379999988777766666665555   4999999999964

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.84  E-value=0.57  Score=33.20  Aligned_cols=36  Identities=28%  Similarity=0.768  Sum_probs=24.8

Q ss_pred             cCCCCCCCCCcceeeecCCCCCCCc---ccccccccccc
Q 017919           78 LKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWT  113 (364)
Q Consensus        78 ~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT  113 (364)
                      .+||.|...+..|--.+..+...|-   |.|.+|..-|+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~wr   39 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRWR   39 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCeeC
Confidence            3799999988776555666555553   89999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>PHA02998 RNA polymerase subunit; Provisional

Probab=80.30  E-value=1.6  Score=41.28  Aligned_cols=39  Identities=26%  Similarity=0.651  Sum_probs=34.0

Q ss_pred             cCcCCCCCCCCCcceeeecCCCCCCCc---cccccccccccc
Q 017919           76 AALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWTR  114 (364)
Q Consensus        76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT~  114 (364)
                      ...+||+|...++-|--.+-.+...|-   |.|..|..-|.-
T Consensus       142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkp  183 (195)
T PHA02998        142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKP  183 (195)
T ss_pred             cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCC
Confidence            679999999999999888888888775   899999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
1tfi_A	50	Transcriptional elongation factor SII; transcripti	81.85
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	81.1

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=81.85  E-value=1.1  Score=32.38  Aligned_cols=37  Identities=22%  Similarity=0.675  Sum_probs=28.7

Q ss_pred             CcCCCCCCCCCcceeeecCCCCCCCc---ccccccccccc
Q 017919           77 ALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWT  113 (364)
Q Consensus        77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT  113 (364)
                      ..+||+|...+..|--.+..+...|-   |.|.+|..-|.
T Consensus         9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~   48 (50)
T 1tfi_A            9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK   48 (50)
T ss_dssp             CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred             ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence            56899999988777666666655553   89999998885

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=81.10  E-value=1  Score=32.62  Aligned_cols=42  Identities=19%  Similarity=0.629  Sum_probs=28.1

Q ss_pred             CCccCcCCCCCCCCCcceeeecCCCCCCC---ccccccccccccc
Q 017919           73 MPEAALKCPRCESTNTKFCYFNNYSLSQP---RHFCKTCRRYWTR  114 (364)
Q Consensus        73 ~pe~~~~CPRC~S~~Tkfcy~NNy~~~QP---R~fCk~CrRyWT~  114 (364)
                      .|....+||+|...+..|--.+-.+...|   .|.|..|.--|+.
T Consensus        11 ~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           11 LPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             SCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             CCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            34446889999985544433343344444   3999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	364
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	90.74
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	89.1
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	83.26

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.74  E-value=0.1  Score=39.04  Aligned_cols=45  Identities=20%  Similarity=0.526  Sum_probs=33.9

Q ss_pred             CCccCcCCCCCCCCCcceeeecCCCCCCCc---ccccccccccccCcc
Q 017919           73 MPEAALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWTRGGA  117 (364)
Q Consensus        73 ~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT~GG~  117 (364)
                      +|.....||+|...+.-|-+.+-.+..-|-   |.|..|.-.|+...+
T Consensus        19 lp~t~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          19 LPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             SCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             CCccCCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            455568999999888877666665554443   899999999998544

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.10  E-value=0.14  Score=35.95  Aligned_cols=37  Identities=22%  Similarity=0.671  Sum_probs=31.4

Q ss_pred             cCcCCCCCCCCCcceeeecCCCCCCCc---cccccccccc
Q 017919           76 AALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYW  112 (364)
Q Consensus        76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyW  112 (364)
                      ...+||+|.+.+..|--++..+...|-   +.|.+|..-|
T Consensus         8 ~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             CCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            467999999999888777777777776   8999999988

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=83.26  E-value=0.32  Score=34.73  Aligned_cols=42  Identities=19%  Similarity=0.653  Sum_probs=31.8

Q ss_pred             CCccCcCCCCCCCCCcceeeecCCCCCCCc---cccccccccccc
Q 017919           73 MPEAALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWTR  114 (364)
Q Consensus        73 ~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT~  114 (364)
                      +|-..++||+|...+.-|--.+-.+..-|-   +.|..|.--|..
T Consensus        11 ~pt~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wre   55 (57)
T d1qypa_          11 LPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             SCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             CCcccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCccee
Confidence            444567999999998887666665555554   899999999964