Citrus Sinensis ID: 017926
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 363 | 2.2.26 [Sep-21-2011] | |||||||
| A1DLW4 | 216 | Hsp70 nucleotide exchange | N/A | no | 0.479 | 0.805 | 0.308 | 3e-16 | |
| Q4WDH3 | 216 | Hsp70 nucleotide exchange | yes | no | 0.479 | 0.805 | 0.303 | 2e-15 | |
| Q32KV6 | 462 | Nucleotide exchange facto | yes | no | 0.526 | 0.413 | 0.317 | 2e-14 | |
| Q1E3S4 | 212 | Hsp70 nucleotide exchange | N/A | no | 0.457 | 0.783 | 0.317 | 2e-14 | |
| Q0CH70 | 212 | Hsp70 nucleotide exchange | N/A | no | 0.449 | 0.768 | 0.315 | 2e-14 | |
| Q9H173 | 461 | Nucleotide exchange facto | yes | no | 0.526 | 0.414 | 0.326 | 2e-14 | |
| A2R4I6 | 287 | Hsp70 nucleotide exchange | yes | no | 0.330 | 0.418 | 0.371 | 5e-14 | |
| Q4P7F2 | 285 | Hsp70 nucleotide exchange | N/A | no | 0.550 | 0.701 | 0.286 | 8e-14 | |
| Q6P6S4 | 465 | Nucleotide exchange facto | yes | no | 0.476 | 0.372 | 0.322 | 3e-13 | |
| Q5AYT7 | 218 | Hsp70 nucleotide exchange | yes | no | 0.462 | 0.770 | 0.302 | 3e-13 |
| >sp|A1DLW4|FES1_NEOFI Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fes1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
+++ +L+W+I +S A+ A D +P+ + + + L PSDA L++ A+
Sbjct: 4 NMNNLLKWSIENSTSAR---QAADSNDAAPAPTSRSNLNPEMLSALFGGPSDADLMKAAM 60
Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197
+ L++ + LE+ A L+E IDNAN+L LG + LV L H + ++R+++AW
Sbjct: 61 EALHSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWC 120
Query: 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAGQEMF 254
+G A QNN Q +++ L L+ M S A KA+Y +SS +RN + F
Sbjct: 121 IGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEF 178
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) |
| >sp|Q4WDH3|FES1_ASPFU Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fes1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
+++ +L+W+I +S A+ A + P+ + + + L PSDA L++ A+
Sbjct: 4 NMNNLLKWSIENSTSAR---QAGNSNGTGPAPASRSNLNPEMLSALFGGPSDADLMKAAM 60
Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197
+ L++ + LE+ A L+E IDNAN+L LG + LV L H + ++R+++AW
Sbjct: 61 EALHSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWC 120
Query: 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAGQEMF 254
+G A QNN Q +++ L L+ M S A KA+Y +SS +RN + F
Sbjct: 121 IGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEF 178
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) |
| >sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos taurus GN=SIL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 113/208 (54%), Gaps = 17/208 (8%)
Query: 93 AKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLKT---------PSDAQLIQIAIDDL 140
AK KE A+ + E ++RQ ++K L +E+LK +D Q++ I+
Sbjct: 137 AKFKEGAE---MENSKEDQERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVRLINKF 193
Query: 141 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK 200
N+S+ SLE+ AL +L V +DNA DL GGL V++ LN + +++ +A++LG
Sbjct: 194 NSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGA 253
Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259
A +NP VQ + +E GAL KL+ ++ + + KAL+ + SL+R+ Q+ F G
Sbjct: 254 AFSSNPKVQVEAIEGGALQKLLVILATEQPLTTKKKALFALCSLLRHFPYAQQQFLKLGG 313
Query: 260 DLMLQDILGNSSFEIRLHRKAVSLVGDL 287
+L+ ++ E+ L + V+L+ DL
Sbjct: 314 LQVLRSLVQEKGMEV-LAVRVVTLLYDL 340
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Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5. Bos taurus (taxid: 9913) |
| >sp|Q1E3S4|FES1_COCIM Hsp70 nucleotide exchange factor FES1 OS=Coccidioides immitis (strain RS) GN=FES1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 100/173 (57%), Gaps = 7/173 (4%)
Query: 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
S ++ +L+W+I +S PA+ + Q Q S L + ++ L+ PSDA L++ A
Sbjct: 3 SHMNNLLKWSIENSVPAQPDDPEQVKQERSLDRLDTQALQ--RLLSN--APSDADLMKAA 58
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW 196
++ +++ +LE+ A L+E +DNAN++ LG + LV L+ + +RK++AW
Sbjct: 59 MEVVSDDFATLENKLIAFDNFEQLIENLDNANNMGVLGLWTPLVEALSDAEPQMRKMAAW 118
Query: 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV--KALYTVSSLIRNN 247
+G A QNN + Q ++L+ A+ KL+ + K+ + V KA+Y +SS +RN+
Sbjct: 119 CIGTAVQNNEMAQNKLLDFKAVPKLLSLAKTD-PDTTVRRKAIYALSSAVRNH 170
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Coccidioides immitis (strain RS) (taxid: 246410) |
| >sp|Q0CH70|FES1_ASPTN Hsp70 nucleotide exchange factor fes1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fes1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
++++ +L+W+I +S A + A ++ R + + + PSDA L++ +
Sbjct: 3 ANMNKILKWSIQNSTNASSDQNAA-------ADATSRGLTPEMMATLFGGPSDADLMKAS 55
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW 196
++ L + + LE+ A L+E IDNAN+L LG + LV L H + D+R+++AW
Sbjct: 56 MEALRSDEVDLENKLVAFDNFEQLIESIDNANNLEPLGLWTPLVELLRHEEADMRRMAAW 115
Query: 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRN 246
+G A QNN Q +++ L AL L+ M S A KA+Y +SS +RN
Sbjct: 116 CVGTAVQNNEKAQDKLVVLNALPTLVAMSTSDPNPAARKKAVYALSSAVRN 166
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) |
| >sp|Q9H173|SIL1_HUMAN Nucleotide exchange factor SIL1 OS=Homo sapiens GN=SIL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 17/208 (8%)
Query: 93 AKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLKT---------PSDAQLIQIAIDDL 140
AK KE A+ S E K RQ E+K L +E+LK +D Q++ I+
Sbjct: 136 AKFKEGAE---MESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIETDMQIMVRLINKF 192
Query: 141 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK 200
N+S+ SLE+ AL +L V +DNA DL GGL V++ LN + +++ +A++LG
Sbjct: 193 NSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGA 252
Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259
A +NP VQ + +E GAL KL+ ++ + + K L+ + SL+R+ Q F G
Sbjct: 253 AFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQFLKLGG 312
Query: 260 DLMLQDILGNSSFEIRLHRKAVSLVGDL 287
+L+ ++ E+ L + V+L+ DL
Sbjct: 313 LQVLRTLVQEKGTEV-LAVRVVTLLYDL 339
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Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5. Homo sapiens (taxid: 9606) |
| >sp|A2R4I6|FES1_ASPNC Hsp70 nucleotide exchange factor fes1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fes1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP 186
PS+A L++ A++ L + + LE+ A L+E IDNAN+L LG + LV L+H
Sbjct: 55 PSEADLMKAAMEALRSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLDHK 114
Query: 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIR 245
+ D+R+++AW +G A QNN Q +++ L AL KL+ + + KA+Y +SS +R
Sbjct: 115 EPDMRRMAAWCIGTAVQNNEKAQDKLIVLNALPKLVSLATADTTPVVRKKAVYAISSAVR 174
Query: 246 N 246
N
Sbjct: 175 N 175
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) |
| >sp|Q4P7F2|FES1_USTMA Hsp70 nucleotide exchange factor FES1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=FES1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 13/213 (6%)
Query: 82 MLQWAIGHSDPAKLKETA-QDVQRLSPSELKKRQMEIKE--LMEKLKTPSDAQL----IQ 134
+L+W + +S + A Q V+++S R+ ++ + L + S+AQ+ +
Sbjct: 10 LLKWGLANSGSTGVASFASQSVEQISADIEAGRRPDLADPNLYNAIMGKSEAQMMAEELS 69
Query: 135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKIS 194
+AID ++ +L D AL +L+E IDNAN+++ + S ++ L+ P+ +I+ +
Sbjct: 70 VAID----TSRTLPDRMTALDNFEMLIEQIDNANNMTSMKMWSPIISLLSAPEAEIQTAA 125
Query: 195 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254
AWI+G A QNN Q VL+ ++ L+ ++ S E KA+Y +S L+++N A F
Sbjct: 126 AWIIGTAVQNNDKAQMAVLDFHPVAALLDLLHSHVDEVRAKAMYALSGLLKHNPAAMHQF 185
Query: 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287
G ML L + + +R RK L+ L
Sbjct: 186 DQLDGWNMLNMALVDPNLGLR--RKTAFLINAL 216
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
| >sp|Q6P6S4|SIL1_RAT Nucleotide exchange factor SIL1 OS=Rattus norvegicus GN=Sil1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 7/180 (3%)
Query: 109 ELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN 168
ELKK E+ ++E +D Q++ I+ N+S+ SLE+ AL +L V +DNA
Sbjct: 170 ELKKEFDELNVVLE-----TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQ 224
Query: 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227
DL GGL V++ LN + +++ +A++LG A +NP VQ + +E GAL KL+ ++ +
Sbjct: 225 DLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATE 284
Query: 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287
+ K L+ + SL+R+ Q+ F G +L+ ++ S ++ L + V+L+ DL
Sbjct: 285 QPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKSAKV-LAVRVVTLLYDL 343
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Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5. Rattus norvegicus (taxid: 10116) |
| >sp|Q5AYT7|FES1_EMENI Hsp70 nucleotide exchange factor fes1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fes1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIA 136
+++ +L+W I +S + + + +P R E++ L PS+A L++ A
Sbjct: 4 NMNNLLKWGIQNSTATQQTSDSNNNASQAP-----RSNITPEMLSALFGGPSEADLMKAA 58
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW 196
++ L + + LE+ A L+E IDNAN+L LG + LV L H + D+R+++AW
Sbjct: 59 MEALRSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDMRRMAAW 118
Query: 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAG 250
+G A QNN Q +++ + A+ L+ M V KA+Y +SS +RN G
Sbjct: 119 CIGTAVQNNEKAQDKLIVMNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQPG 173
|
Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 363 | ||||||
| 359473854 | 395 | PREDICTED: hsp70 nucleotide exchange fac | 0.842 | 0.774 | 0.737 | 1e-127 | |
| 255543300 | 395 | sil1, putative [Ricinus communis] gi|223 | 0.865 | 0.794 | 0.712 | 1e-125 | |
| 224053615 | 400 | predicted protein [Populus trichocarpa] | 0.815 | 0.74 | 0.714 | 1e-119 | |
| 449445798 | 395 | PREDICTED: nucleotide exchange factor SI | 0.870 | 0.8 | 0.647 | 1e-111 | |
| 296085572 | 320 | unnamed protein product [Vitis vinifera] | 0.683 | 0.775 | 0.790 | 1e-108 | |
| 297819910 | 382 | binding protein [Arabidopsis lyrata subs | 0.845 | 0.803 | 0.628 | 1e-106 | |
| 15231095 | 382 | nucleotide exchange factor SIL1 [Arabido | 0.845 | 0.803 | 0.610 | 1e-105 | |
| 307135818 | 444 | SIL1 [Cucumis melo subsp. melo] | 0.842 | 0.689 | 0.525 | 3e-95 | |
| 356574918 | 372 | PREDICTED: nucleotide exchange factor SI | 0.812 | 0.793 | 0.597 | 2e-93 | |
| 388523137 | 378 | unknown [Medicago truncatula] | 0.707 | 0.679 | 0.665 | 1e-86 |
| >gi|359473854|ref|XP_002269010.2| PREDICTED: hsp70 nucleotide exchange factor FES1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/309 (73%), Positives = 261/309 (84%), Gaps = 3/309 (0%)
Query: 21 ITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSID 80
+ + +A+RVN SSS GLFWSTAKE+ D RK+E + + VND+ +LDGGFSS+D
Sbjct: 18 VGAVMAQADRVNKSSSGGLFWSTAKEEGDLMRKSEAQESTVG---VNDNADLDGGFSSLD 74
Query: 81 GMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDL 140
GMLQWAIGHSDP KLKETAQDVQR SP+ELKKRQMEIKELMEKLK PSDAQL+QIAI DL
Sbjct: 75 GMLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIADL 134
Query: 141 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK 200
NNS+L +ED RALQELLILVEPIDNANDL+KLGGL+V++ +L++PD +IRK SAWILGK
Sbjct: 135 NNSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILGK 194
Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260
ASQNNP+VQKQVLELGAL KLMKMV SSFVEEA KALY VS+LIRNNLA QE+FY +AGD
Sbjct: 195 ASQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAGD 254
Query: 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD 320
LMLQDIL N S +IRL RK V LVGDLA+CQLE+ HK E P F +R FLKSVVDLTAS+D
Sbjct: 255 LMLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASSD 314
Query: 321 LDLQEKVFL 329
LDLQEK +
Sbjct: 315 LDLQEKALI 323
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543300|ref|XP_002512713.1| sil1, putative [Ricinus communis] gi|223548674|gb|EEF50165.1| sil1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/316 (71%), Positives = 272/316 (86%), Gaps = 2/316 (0%)
Query: 15 LLVLLMITMAIGRAERVNNSSSA-GLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELD 73
L+ +++ITM + ER+N SSS+ G+FWST KE+ D RKAE ++D +AAA+VNDHD LD
Sbjct: 9 LVTVILITM-VAEGERLNKSSSSSGVFWSTVKEESDLLRKAEPDEDPSAAAVVNDHDHLD 67
Query: 74 GGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLI 133
GGFSS+DGMLQWA+GHSDP KLKETAQDV+RLSP++LK RQ+EIKELM++LK PSDA L+
Sbjct: 68 GGFSSLDGMLQWAVGHSDPEKLKETAQDVRRLSPTDLKNRQLEIKELMDELKMPSDAHLM 127
Query: 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKI 193
Q AI+DL+NS+L LED RALQELLILVEPIDNANDLSKLGGL VL+ +LNHPD++IR+I
Sbjct: 128 QNAINDLSNSSLPLEDHHRALQELLILVEPIDNANDLSKLGGLGVLIRELNHPDSNIRRI 187
Query: 194 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253
SAW+LGKASQNNP VQKQVLE+GAL+KLM+MVKS+ EE +KALY VS+LIRNNLAGQE+
Sbjct: 188 SAWVLGKASQNNPFVQKQVLEMGALNKLMQMVKSNCAEEGIKALYAVSALIRNNLAGQEL 247
Query: 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313
FY EAGD MLQ+ILG+SS +IRL RKAV LV DLA+CQLEN+ + E P F +RFFLKSVV
Sbjct: 248 FYAEAGDQMLQEILGDSSTDIRLRRKAVFLVADLAECQLENVGRAELPFFSNRFFLKSVV 307
Query: 314 DLTASADLDLQEKVFL 329
DL +S DLDLQEK +
Sbjct: 308 DLVSSTDLDLQEKALV 323
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053615|ref|XP_002297899.1| predicted protein [Populus trichocarpa] gi|222845157|gb|EEE82704.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/298 (71%), Positives = 258/298 (86%), Gaps = 2/298 (0%)
Query: 34 SSSAGLFWSTAKEDEDQPRKAE--RNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSD 91
S++AGL WST K++ D KAE +DDS+AAA+VNDHD+LDGGFSS++GML WAIGHSD
Sbjct: 31 SATAGLLWSTGKDEPDLLSKAEPENSDDSSAAAVVNDHDDLDGGFSSLEGMLHWAIGHSD 90
Query: 92 PAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQ 151
P KLKE A+DVQRLS SEL+KRQ+E+KELMEK+K PSDA+L+ +AIDDLNNS+ SLED Q
Sbjct: 91 PTKLKENAEDVQRLSASELQKRQIELKELMEKMKMPSDAELMHMAIDDLNNSSSSLEDRQ 150
Query: 152 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211
RALQELLILVEP+DNANDL+KLGGL++++ +L+HPD DIR++SAW+LGKA QNN VQKQ
Sbjct: 151 RALQELLILVEPLDNANDLNKLGGLAIVIQELDHPDHDIRRLSAWVLGKACQNNAAVQKQ 210
Query: 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271
+LELGALSKL+KMVKSS +EEA+KALY VS+LI+N+LAGQE FY E GD MLQ+IL NSS
Sbjct: 211 ILELGALSKLIKMVKSSSIEEAIKALYAVSTLIQNHLAGQEFFYAEDGDAMLQEILSNSS 270
Query: 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFL 329
+IRL RKAVS+V DLA+ QLEN+ + E P FR+RFFLKSVVDLTAS DLDLQEK +
Sbjct: 271 NDIRLLRKAVSVVADLAEYQLENIIRAESPCFRNRFFLKSVVDLTASTDLDLQEKALV 328
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445798|ref|XP_004140659.1| PREDICTED: nucleotide exchange factor SIL1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/326 (64%), Positives = 257/326 (78%), Gaps = 10/326 (3%)
Query: 4 RRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDED---QPRKAERNDDS 60
RR+ + LW + L+I A N+SS GL WS+AK++ D R E + +
Sbjct: 2 RRSLVVGLCLWFSLTLVIVDA-------NDSSLEGLIWSSAKQEGDLLIDHRPQEDSSAA 54
Query: 61 TAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKEL 120
AA++V+D D DGGFSS+D MLQWAIGHSDPAKLK+TAQDV+RLSP+E+KKRQ EIK+L
Sbjct: 55 AAASVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPNEIKKRQEEIKDL 114
Query: 121 MEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV 180
+E+LK PSDA+L+QIA+DDL NS+LSLED RALQELL+LVEPIDNANDL KLGGL+VL
Sbjct: 115 IEELKLPSDAKLMQIAVDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAVLT 174
Query: 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTV 240
+LNH D D+RKI+AWILGKASQNNP+VQKQVLELGAL+KL+ M KS FVEEA+KALY +
Sbjct: 175 RELNHVDPDVRKIAAWILGKASQNNPIVQKQVLELGALAKLVSMAKSDFVEEAIKALYAI 234
Query: 241 SSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 300
SSL++NNL+GQE+FY EAG++MLQDIL NSS +IRL +KAV LV DLA QLE + E
Sbjct: 235 SSLVQNNLSGQELFYAEAGEIMLQDILSNSSMDIRLQKKAVFLVSDLAVTQLEKPDEAER 294
Query: 301 PLFRDRFFLKSVVDLTASADLDLQEK 326
P F DR FLKSVV+L S D+DLQEK
Sbjct: 295 PFFGDRLFLKSVVNLIHSTDIDLQEK 320
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085572|emb|CBI29304.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/248 (79%), Positives = 218/248 (87%)
Query: 82 MLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLN 141
MLQWAIGHSDP KLKETAQDVQR SP+ELKKRQMEIKELMEKLK PSDAQL+QIAI DLN
Sbjct: 1 MLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIADLN 60
Query: 142 NSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 201
NS+L +ED RALQELLILVEPIDNANDL+KLGGL+V++ +L++PD +IRK SAWILGKA
Sbjct: 61 NSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILGKA 120
Query: 202 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 261
SQNNP+VQKQVLELGAL KLMKMV SSFVEEA KALY VS+LIRNNLA QE+FY +AGDL
Sbjct: 121 SQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAGDL 180
Query: 262 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL 321
MLQDIL N S +IRL RK V LVGDLA+CQLE+ HK E P F +R FLKSVVDLTAS+DL
Sbjct: 181 MLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASSDL 240
Query: 322 DLQEKVFL 329
DLQEK +
Sbjct: 241 DLQEKALI 248
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819910|ref|XP_002877838.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323676|gb|EFH54097.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/318 (62%), Positives = 251/318 (78%), Gaps = 11/318 (3%)
Query: 11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
R + LLV++ + + AE+VN SS G+ WSTA+++ AE +DS ++ + D
Sbjct: 8 RCMLLLVVISL-VGCSIAEKVN--SSGGIVWSTARDE------AELVEDS--GVVIGEQD 56
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
++DGGFSS+DGML WAIGHSDPA LKE A+D +++S EL+KRQ+E+KEL+EKLK PSDA
Sbjct: 57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSDA 116
Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190
L+QIAIDDL NS+LSLED RALQELLILVEPIDNANDLSK GGL V+ G+LNH DT++
Sbjct: 117 NLMQIAIDDLKNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176
Query: 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250
RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSDEEAVKALFAVSALIRNNIAG 236
Query: 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310
Q+MFY G +ML+D++ N S +I+L RKAV LVGDLA+ QL+N K E P+F+DRFFLK
Sbjct: 237 QDMFYAAHGYIMLKDVMSNGSLDIKLRRKAVFLVGDLAESQLQNTGKDELPIFKDRFFLK 296
Query: 311 SVVDLTASADLDLQEKVF 328
SVVDL DLDLQEK
Sbjct: 297 SVVDLIVVLDLDLQEKAL 314
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231095|ref|NP_190766.1| nucleotide exchange factor SIL1 [Arabidopsis thaliana] gi|4678927|emb|CAB41318.1| hypothetical protein [Arabidopsis thaliana] gi|20268764|gb|AAM14085.1| unknown protein [Arabidopsis thaliana] gi|21689669|gb|AAM67456.1| unknown protein [Arabidopsis thaliana] gi|332645350|gb|AEE78871.1| nucleotide exchange factor SIL1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/318 (61%), Positives = 252/318 (79%), Gaps = 11/318 (3%)
Query: 11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
R ++LLV++ + + AE+VN SS G+ WS+ +++ AE +DS ++ + D
Sbjct: 8 RYVFLLVVISL-VGFSIAEKVN--SSGGMVWSSVRDE------AELVEDS--GVVIGEQD 56
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
++DGGFSS+DGML WAIGHSDPA LKE A+D +++S EL+KRQ+E+KEL+EKLK PS+A
Sbjct: 57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNA 116
Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190
+L+QIAIDDLNNS+LSLED RALQELLILVEPIDNANDLSK GGL V+ G+LNH DT++
Sbjct: 117 KLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176
Query: 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250
RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSTEEAVKALFAVSALIRNNIAG 236
Query: 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310
Q++F+ G +ML+D++ N S +++L RKAV LVGDLA+ QL+N K E P+F+DR FLK
Sbjct: 237 QDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLVGDLAESQLQNTEKDELPIFKDRLFLK 296
Query: 311 SVVDLTASADLDLQEKVF 328
SVVDL DLDLQEK
Sbjct: 297 SVVDLIVVLDLDLQEKAL 314
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307135818|gb|ADN33690.1| SIL1 [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 204/388 (52%), Positives = 247/388 (63%), Gaps = 82/388 (21%)
Query: 4 RRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAA 63
RR+ + LW + L+I A N+SS GL WS+AKED + AA
Sbjct: 2 RRSLVVGLCLWFSLTLVIADA-------NDSSLEGLIWSSAKEDSA----------AAAA 44
Query: 64 AIVNDHDELDG-------------------------------GFSSIDGMLQ-------- 84
+V+D D DG G SI M++
Sbjct: 45 PVVHDADGFDGGFSSLDSMLQWAIGPVTKQGLPDNSIDVSFAGLHSIRAMIEEFLLHPPS 104
Query: 85 ----------------WAI----------GHSDPAKLKETAQDVQRLSPSELKKRQMEIK 118
W I GHSDPAKLK+TAQDV++LSPSE+KKRQ EIK
Sbjct: 105 RDKGVFLWLAEVCAVVWYIWGERNDRVFWGHSDPAKLKDTAQDVKQLSPSEIKKRQEEIK 164
Query: 119 ELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSV 178
+L+E+LK PSDA+L+QIA+DDL NS+LSLED RALQELL+LVEPIDNANDL KLGGL+V
Sbjct: 165 DLIEELKLPSDAKLMQIAVDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAV 224
Query: 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALY 238
L +LNH D D+RKI+AWILGKASQNNP+VQKQVLELGAL+KL+ MVKS FVEEA+KALY
Sbjct: 225 LTRELNHVDPDVRKIAAWILGKASQNNPIVQKQVLELGALAKLVSMVKSDFVEEAIKALY 284
Query: 239 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298
+SSL++NNL+GQ++FY EAG+ MLQDIL NSS +IRL +KAV L DL QLE +
Sbjct: 285 AISSLVQNNLSGQKLFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLTVTQLEKPDEA 344
Query: 299 EPPLFRDRFFLKSVVDLTASADLDLQEK 326
E P F DRFFLKSVV+L S D+DLQEK
Sbjct: 345 ERPFFGDRFFLKSVVNLIHSTDIDLQEK 372
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574918|ref|XP_003555590.1| PREDICTED: nucleotide exchange factor SIL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 190/318 (59%), Positives = 225/318 (70%), Gaps = 23/318 (7%)
Query: 16 LVLLMITMAI----GRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDE 71
L LL T A+ G AE N +S GL WSTA E+ D +
Sbjct: 7 LSLLFFTAAVAAETGGAE--PNLTSGGLLWSTAAEESDLAPPPD---------------- 48
Query: 72 LDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQ 131
DGGFSS+DGMLQWAI HSDP KLKE+A+ QRL PSEL KRQ EIKE+MEK+K PSDA+
Sbjct: 49 -DGGFSSLDGMLQWAISHSDPGKLKESAEAQQRLPPSELYKRQFEIKEIMEKMKMPSDAE 107
Query: 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIR 191
L++IAI DLNN + SLED RALQELL LVE IDNANDLSKLGGL + +L D IR
Sbjct: 108 LMRIAISDLNNVSTSLEDRHRALQELLELVESIDNANDLSKLGGLLAVREELYCSDPGIR 167
Query: 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251
I+AW+LGKASQNN +VQ+Q+LELG LS+LMKMV S+ +EEA KALY VS+LIRN+LA Q
Sbjct: 168 TIAAWVLGKASQNNAIVQQQILELGVLSRLMKMVNSNSMEEANKALYAVSALIRNDLASQ 227
Query: 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 311
+FY EAG MLQDIL N+S ++RL RKAV L+ DLA QLEN+ + E P F D+ LK+
Sbjct: 228 GLFYAEAGGWMLQDILSNTSLDVRLRRKAVRLLADLAAYQLENVDREEQPFFNDQDLLKA 287
Query: 312 VVDLTASADLDLQEKVFL 329
VVDLT S DLDLQEK +
Sbjct: 288 VVDLTTSTDLDLQEKALV 305
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388523137|gb|AFK49630.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/257 (66%), Positives = 205/257 (79%)
Query: 73 DGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQL 132
DGGF S+D ML WAI HSDP KLKE+AQ Q+LSPSEL+KRQ+EIKE+MEK K SDA+L
Sbjct: 55 DGGFPSMDSMLHWAISHSDPEKLKESAQSHQKLSPSELQKRQLEIKEIMEKTKMLSDAEL 114
Query: 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRK 192
++IAI DLNN++ SLED RAL ELL LVEP+DNANDL+KLGGL + +L H D+ IR
Sbjct: 115 MKIAIKDLNNASTSLEDRYRALLELLELVEPLDNANDLNKLGGLHAVTQELKHYDSGIRA 174
Query: 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252
+AW+LGKASQNNP Q+QVLELG LS+L+ MVKSS +EE +KALY VS+L RNNLA QE
Sbjct: 175 TAAWVLGKASQNNPTFQQQVLELGVLSRLIAMVKSSSIEEGIKALYAVSALTRNNLANQE 234
Query: 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 312
+FY E G LMLQDIL N+S +I+L RKAV L+ DLA QLEN++K EPP F ++ LKSV
Sbjct: 235 LFYAEGGGLMLQDILRNASIDIKLRRKAVLLLTDLADYQLENVNKDEPPFFNNQDLLKSV 294
Query: 313 VDLTASADLDLQEKVFL 329
VDLTAS DLDLQEK +
Sbjct: 295 VDLTASTDLDLQEKALV 311
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 363 | ||||||
| TAIR|locus:2083800 | 382 | AT3G51980 "AT3G51980" [Arabido | 0.840 | 0.798 | 0.585 | 6.3e-92 | |
| UNIPROTKB|F1NWG7 | 380 | SIL1 "Uncharacterized protein" | 0.674 | 0.644 | 0.286 | 2.7e-13 | |
| TAIR|locus:2084365 | 363 | Fes1B "Fes1B" [Arabidopsis tha | 0.647 | 0.647 | 0.275 | 9e-13 | |
| TAIR|locus:2185113 | 324 | Fes1C "Fes1C" [Arabidopsis tha | 0.705 | 0.790 | 0.284 | 9.8e-13 | |
| ASPGD|ASPL0000004813 | 218 | AN6543 [Emericella nidulans (t | 0.465 | 0.775 | 0.258 | 2e-12 | |
| TAIR|locus:2083559 | 363 | Fes1A "Fes1A" [Arabidopsis tha | 0.545 | 0.545 | 0.270 | 7.9e-12 | |
| UNIPROTKB|Q32KV6 | 462 | SIL1 "Nucleotide exchange fact | 0.534 | 0.419 | 0.276 | 4.3e-11 | |
| MGI|MGI:1932040 | 465 | Sil1 "endoplasmic reticulum ch | 0.517 | 0.404 | 0.306 | 2.1e-10 | |
| UNIPROTKB|Q9H173 | 461 | SIL1 "Nucleotide exchange fact | 0.526 | 0.414 | 0.302 | 2.7e-10 | |
| RGD|735103 | 465 | Sil1 "SIL1 homolog, endoplasmi | 0.517 | 0.404 | 0.306 | 2.7e-10 |
| TAIR|locus:2083800 AT3G51980 "AT3G51980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 185/316 (58%), Positives = 241/316 (76%)
Query: 11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
R ++LLV++ + + AE+VN SS G+ WS+ +++ AE +DS ++ + D
Sbjct: 8 RYVFLLVVISL-VGFSIAEKVN--SSGGMVWSSVRDE------AELVEDS--GVVIGEQD 56
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
++DGGFSS+DGML WAIGHSDPA LKE A+D +++S EL+KRQ+E+KEL+EKLK PS+A
Sbjct: 57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNA 116
Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDI 190
+L+QIAIDDLNNS+LSLED RALQELLILVEPIDNAND NH DT++
Sbjct: 117 KLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176
Query: 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250
RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSTEEAVKALFAVSALIRNNIAG 236
Query: 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310
Q++F+ G +ML+D++ N S +++L RKAV LVGDLA+ QL+N K E P+F+DR FLK
Sbjct: 237 QDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLVGDLAESQLQNTEKDELPIFKDRLFLK 296
Query: 311 SVVDLTASADLDLQEK 326
SVVDL DLDLQEK
Sbjct: 297 SVVDLIVVLDLDLQEK 312
|
|
| UNIPROTKB|F1NWG7 SIL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 77/269 (28%), Positives = 135/269 (50%)
Query: 93 AKLKETAQDVQRLSPSELKK--RQME-IKELMEKL--KTPSDAQLIQIAIDDLNNSTLSL 147
AK+KE+ + + E++K R +E +KE EKL K +D +++ I N+S +L
Sbjct: 61 AKMKESEKAERMAHEEEVRKKFRPIEQLKEEFEKLNVKMETDYEIMDKLISKFNSSASTL 120
Query: 148 EDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPL 207
++ AL +L V +DNA D N + +++ +A++LG A +NP
Sbjct: 121 DEKVAALYDLEYYVHQVDNAKDFLSMGGLRLVIEGLNSTEAVLKEHAAFVLGAALSSNPK 180
Query: 208 VQKQVLELGALSKLMKMVKSSFVEEAVK--ALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265
VQ + +E GAL KL+ +V + +AVK AL+ +SSL+R+ Q+ F G +L+
Sbjct: 181 VQIEAIEGGALQKLLVIVATE-QPQAVKKKALFALSSLLRHFPYAQQQFLKLGGLQVLRG 239
Query: 266 IL---GNSSFEIR----LHRKAVSLV-------GDLAKCQLENMHKVE-PPLFRDRFFLK 310
+ G S+ +R L+ V + GD A+ +++ +V+ P ++ +
Sbjct: 240 LFRQPGTSALCVRAVTLLYDLFVEKMLLEDSQHGDHAEEKVQQYRRVQLVPAVLEQDWCV 299
Query: 311 SVVDLTASADLDLQEKVFLEHVFCGLVFC 339
+V L A + D +EKV L+ V + FC
Sbjct: 300 AVPGLLALPEHDAREKV-LKAVAVLMEFC 327
|
|
| TAIR|locus:2084365 Fes1B "Fes1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 68/247 (27%), Positives = 114/247 (46%)
Query: 80 DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
DG+L+W++ HSD A + R ++ Q + + ++K S Q++++
Sbjct: 9 DGLLKWSLSHSDGASSSSRISEEDR--QWFVEAMQAHTIDSISRMKVIS--QIMKMPEQV 64
Query: 140 LNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILG 199
L ++ +D + L EL VE ID AND + + IR SA +L
Sbjct: 65 LEAQGVTPDDLEGMLAELQEHVESIDLANDLHSIGGLVPLLSYLKNSNAKIRAKSADVLT 124
Query: 200 KASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258
QNNP Q+ V+E L+ + + KAL +SSLIRNN G F +
Sbjct: 125 TVVQNNPRSQQLVMEANGFEPLLTNFIADPDIRVRTKALGAISSLIRNNQPGITAFRLAN 184
Query: 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318
G L+D L + + +R RKA++L+ L Q N + + RD F + ++ L ++
Sbjct: 185 GYAGLRDALVSDT--VRFQRKALNLLHYLL--QESNS---DCKIVRDLGFPRIMIHLASN 237
Query: 319 ADLDLQE 325
D +++E
Sbjct: 238 QDFEVRE 244
|
|
| TAIR|locus:2185113 Fes1C "Fes1C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 78/274 (28%), Positives = 127/274 (46%)
Query: 80 DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
DG+L+W++ HSD + T Q + + Q + +++++LK + Q++Q
Sbjct: 9 DGLLKWSLSHSDGTR--PTCQLSEEDRKWFAEAMQSQTVDVVKRLKEIT--QVLQTPQQV 64
Query: 140 LNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILG 199
L ++ +D + L EL VE ID AND + + +IR SA ++
Sbjct: 65 LEAHEVTPQDIEGLLDELQEHVESIDMANDLHSVGGLVPLLGYLKNSNANIRAKSADVVS 124
Query: 200 KASQNNPLVQKQVLELGAL-SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258
+NNP Q+ V+E L S L++ + + +AL +SSLIRNN G F +
Sbjct: 125 TIVENNPRSQESVMEANGLESLLLRFTSDTDMHSRTQALGAISSLIRNNKPGITGFRIAN 184
Query: 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV-DLTA 317
G L+D L S +R RKA++L+ L + EN + + F L ++ L +
Sbjct: 185 GYSGLKDALETDS--VRFQRKALNLLHYLLQ---ENDSDSDIAI---EFGLHHLMMHLVS 236
Query: 318 SADLDLQEKVF---LEHVFCGLVFCTC-PCIVRG 347
S D D++E LE V TC IV+G
Sbjct: 237 SFDADVREAALRGLLELVKARKDCSTCGSSIVKG 270
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| ASPGD|ASPL0000004813 AN6543 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 45/174 (25%), Positives = 84/174 (48%)
Query: 78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
+++ +L+W I +S + + + + S+ + + + L PS+A L++ A+
Sbjct: 4 NMNNLLKWGIQNSTATQQTSDSNN----NASQAPRSNITPEMLSALFGGPSEADLMKAAM 59
Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWI 197
+ L + + LE+ A L+E IDNAN+ H + D+R+++AW
Sbjct: 60 EALRSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDMRRMAAWC 119
Query: 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAG 250
+G A QNN Q +++ + A+ L+ M V KA+Y +SS +RN G
Sbjct: 120 IGTAVQNNEKAQDKLIVMNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQPG 173
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| TAIR|locus:2083559 Fes1A "Fes1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 56/207 (27%), Positives = 102/207 (49%)
Query: 80 DGMLQWAIGHSDPAK-LKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAID 138
DG+L+W++ H+D + ++ +++ ++ ++ + +++ + M+++ ++Q
Sbjct: 9 DGLLKWSLSHADGTRPTRQLSEEDRKWFMEAMQSQTVDVVKRMKEITL-----VMQTPEQ 63
Query: 139 DLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWIL 198
L ++ ED Q L EL VE ID AND + +IR +A ++
Sbjct: 64 VLVEHGVTPEDIQDLLDELQEHVESIDMANDLHSIGGLVPLLSFLKNSHANIRAKAADVV 123
Query: 199 GKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE 257
QNNP Q+ V+E AL L+ S + +AL +SSLIR+N G F +
Sbjct: 124 STIVQNNPRSQELVMETNALESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVTAFKLA 183
Query: 258 AGDLMLQDILGNSSFEIRLHRKAVSLV 284
G L+D L + S +R RKA++L+
Sbjct: 184 NGYAGLRDALASDS--VRFQRKALNLL 208
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| UNIPROTKB|Q32KV6 SIL1 "Nucleotide exchange factor SIL1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 55/199 (27%), Positives = 104/199 (52%)
Query: 93 AKLKETAQDVQRLSPSELKKRQME-IKELMEKLKT--PSDAQLIQIAIDDLNNSTLSLED 149
A+++ + +D +R + + R +E +K+ E+L +D Q++ I+ N+S+ SLE+
Sbjct: 143 AEMENSKEDQERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVRLINKFNSSSSSLEE 202
Query: 150 SQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPLVQ 209
AL +L V +DNA D N + +++ +A++LG A +NP VQ
Sbjct: 203 KIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQ 262
Query: 210 KQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 268
+ +E GAL KL+ ++ + + KAL+ + SL+R+ Q+ F G +L+ ++
Sbjct: 263 VEAIEGGALQKLLVILATEQPLTTKKKALFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQ 322
Query: 269 NSSFEIRLHRKAVSLVGDL 287
E+ L + V+L+ DL
Sbjct: 323 EKGMEV-LAVRVVTLLYDL 340
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| MGI|MGI:1932040 Sil1 "endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 174 (66.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 60/196 (30%), Positives = 99/196 (50%)
Query: 94 KLKETAQDVQRLSP-SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQR 152
+L A Q P ELKK E EL L+T D Q++ I+ N+S+ SLE+
Sbjct: 154 ELARQATVKQLFRPIEELKK---EFDELNVVLET--DMQIMVRLINKFNSSSSSLEEKVA 208
Query: 153 ALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPLVQKQV 212
AL +L V +DNA D N + +++ +A++LG A +NP VQ +
Sbjct: 209 ALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEA 268
Query: 213 LELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271
+E GAL KL+ ++ ++ A K L+ + SL+R+ Q+ F G +L+ ++ S
Sbjct: 269 IEGGALQKLLVILATNQPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKS 328
Query: 272 FEIRLHRKAVSLVGDL 287
++ L + V+L+ DL
Sbjct: 329 AKV-LAVRVVTLLYDL 343
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| UNIPROTKB|Q9H173 SIL1 "Nucleotide exchange factor SIL1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 63/208 (30%), Positives = 104/208 (50%)
Query: 93 AKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLKTP---------SDAQLIQIAIDDL 140
AK KE A+ ++ S E K RQ E+K L +E+LK +D Q++ I+
Sbjct: 136 AKFKEGAE-ME--SSKEDKARQAEVKRLFRPIEELKKDFDELNVVIETDMQIMVRLINKF 192
Query: 141 NNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGK 200
N+S+ SLE+ AL +L V +DNA D N + +++ +A++LG
Sbjct: 193 NSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGA 252
Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAG 259
A +NP VQ + +E GAL KL+ ++ + A K L+ + SL+R+ Q F G
Sbjct: 253 AFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQFLKLGG 312
Query: 260 DLMLQDILGNSSFEIRLHRKAVSLVGDL 287
+L+ ++ E+ L + V+L+ DL
Sbjct: 313 LQVLRTLVQEKGTEV-LAVRVVTLLYDL 339
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| RGD|735103 Sil1 "SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 60/196 (30%), Positives = 98/196 (50%)
Query: 94 KLKETAQDVQRLSP-SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQR 152
+L A Q P ELKK E EL L+T D Q++ I+ N+S+ SLE+
Sbjct: 154 ELARQATVKQLFRPIEELKK---EFDELNVVLET--DMQIMVRLINKFNSSSSSLEEKVA 208
Query: 153 ALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPLVQKQV 212
AL +L V +DNA D N + +++ +A++LG A +NP VQ +
Sbjct: 209 ALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEA 268
Query: 213 LELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271
+E GAL KL+ ++ + A K L+ + SL+R+ Q+ F G +L+ ++ S
Sbjct: 269 IEGGALQKLLVILATEQPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKS 328
Query: 272 FEIRLHRKAVSLVGDL 287
++ L + V+L+ DL
Sbjct: 329 AKV-LAVRVVTLLYDL 343
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00006252001 | SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (392 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00028084001 | SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_42, whole genome shotg [...] (345 aa) | • | 0.800 | |||||||
 | GSVIVG00023179001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (467 aa) | • | 0.800 | |||||||
 | GSVIVG00006687001 | SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (667 aa) | • | 0.800 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 363 | |||
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 5e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 8e-05 | |
| pfam08609 | 87 | pfam08609, Fes1, Nucleotide exchange factor Fes1 | 5e-04 | |
| COG0216 | 363 | COG0216, PrfA, Protein chain release factor A [Tra | 7e-04 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206
++ AL L DN + + GGL LV L D ++ K + W L +
Sbjct: 24 QREAAWALSNLSAGNN--DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81
Query: 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245
+ VLE G + KL+ ++ SS + A +S+L
Sbjct: 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-05
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228
+ + GGL LV L+ D ++++ +AW L S N + V+E G L L++++KS
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 229 ---FVEEAVKALYTVSS 242
V+ A+ AL +++
Sbjct: 62 DEEVVKAALWALRNLAA 78
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An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|219931 pfam08609, Fes1, Nucleotide exchange factor Fes1 | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 5e-04
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
+++ +L+W+I E + PS + R ++ + L + PSDA L++ A
Sbjct: 3 KNMNNLLKWSI---------ENSTGAGSSPPSIPQPRSLDPEMLDQLFGGPSDADLMKAA 53
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDL 170
++ + + ++LED A +L+E IDNAN+L
Sbjct: 54 MEVITDEEVTLEDKVIAFDNFEMLIENIDNANNL 87
|
Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity. Length = 87 |
| >gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 89 HSDPAKLKETAQDVQRLSP-----SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNS 143
SDP + ++ +++ L P E KK Q ++++ E L D ++ ++A +++
Sbjct: 29 ISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKEL 88
Query: 144 TLSLEDSQRALQELLILVEPIDNAN 168
+E+ + L+ LL+ +P D+ N
Sbjct: 89 EAKIEELEEELKILLLPKDPNDDKN 113
|
Length = 363 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 363 | |||
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 100.0 | |
| PF08609 | 92 | Fes1: Nucleotide exchange factor Fes1; InterPro: I | 99.78 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.73 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.72 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.66 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.63 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.59 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.58 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.54 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.43 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.29 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.23 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.07 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 99.05 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.04 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.04 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.92 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.8 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 98.76 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.69 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.65 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.42 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 98.21 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.18 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.18 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.18 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 98.14 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.11 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.1 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 98.01 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.99 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 97.96 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.89 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.88 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 97.82 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.81 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.77 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.69 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 97.68 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 97.62 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.61 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.61 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.59 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 97.55 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 97.46 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.4 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.4 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.37 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 97.37 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.32 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 97.22 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.2 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.19 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 97.18 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.17 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 97.13 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.12 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.08 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.07 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.04 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.99 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.95 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 96.87 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.87 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.79 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.79 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 96.73 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.63 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 96.53 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 96.47 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 96.47 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.38 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 96.31 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 96.29 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.17 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.16 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.1 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 96.07 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 96.05 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.0 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.87 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 95.79 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 95.59 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.54 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 95.48 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 95.47 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 95.41 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 95.37 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.34 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 95.28 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 95.17 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.14 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.07 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 95.06 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 94.92 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.72 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.66 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 94.56 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 94.48 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 94.4 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 94.4 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 94.39 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 94.35 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 94.24 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 94.21 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 94.19 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 94.05 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 94.04 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 94.02 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 93.88 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 93.77 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 93.72 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 93.71 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.7 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 93.68 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 93.49 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 93.43 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 93.39 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 93.16 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 92.98 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 92.91 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 92.85 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 92.73 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 92.45 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 92.35 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 92.24 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 92.23 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 92.19 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 92.18 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 92.05 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 91.98 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 91.89 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 91.67 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 91.47 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 91.29 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 91.21 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 91.14 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 91.06 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 91.05 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 91.02 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 90.91 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 90.41 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 90.08 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 90.07 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 89.97 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 89.8 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 89.76 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 89.64 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 89.51 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 89.3 | |
| PF01365 | 207 | RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi | 89.16 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 88.97 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 88.92 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 88.88 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 88.86 | |
| PF04869 | 312 | Uso1_p115_head: Uso1 / p115 like vesicle tethering | 88.47 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 88.43 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 88.35 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 88.12 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 88.12 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 87.8 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 87.46 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 87.13 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 87.13 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 87.06 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 86.92 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 86.77 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 86.6 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 86.22 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 86.06 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 86.04 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 85.59 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 85.13 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 84.97 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 84.95 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 84.69 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 84.54 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 84.44 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 84.34 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 84.25 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 84.01 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 83.96 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 83.65 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 83.4 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 82.72 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 82.7 | |
| PF14726 | 98 | RTTN_N: Rotatin, an armadillo repeat protein, cent | 82.69 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 82.66 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 82.64 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 82.14 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 82.06 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 81.56 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 81.32 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 81.2 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 80.79 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 80.78 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 80.16 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 80.01 |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=313.16 Aligned_cols=249 Identities=35% Similarity=0.495 Sum_probs=213.4
Q ss_pred CCCChHHHHhhHhhcC--CCCCcccch--------hcccCCCHHHHHHhHHHHHHHHHHcC---------CCCHHHHHHH
Q 017926 75 GFSSIDGMLQWAIGHS--DPAKLKETA--------QDVQRLSPSELKKRQMEIKELMEKLK---------TPSDAQLIQI 135 (363)
Q Consensus 75 ~~~~l~~LL~wsi~~s--~~~~~~~~~--------~~~~~~~~e~l~~r~~~Lkeal~~l~---------~~~d~~lmk~ 135 (363)
..++|+|+++|++.++ .|+++...- ...+ ++ +++++|+.++|..-+ +......|+.
T Consensus 10 ~~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~ 84 (342)
T KOG2160|consen 10 RPPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLK--DE---KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSM 84 (342)
T ss_pred cCccccchhhcccccccccCCCchhhhccchhhhhhhcc--Cc---ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHh
Confidence 3688999999999998 554432110 0111 11 458889988886543 1223345555
Q ss_pred -HHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHH
Q 017926 136 -AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (363)
Q Consensus 136 -al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le 214 (363)
++..++.+++++++|+.||++|+++||+||||++|+++|||.+++.+|+++++++|+.|||+||+++||||++|+.+++
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E 164 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE 164 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhh
Q 017926 215 LGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (363)
Q Consensus 215 ~G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~ 293 (363)
.|++++|+++|++++ ..++.||+||||++||||++++..|...+|+.+|..+|++++.+.++|+|+++|+++|+..
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~--- 241 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE--- 241 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---
Confidence 999999999999765 4678999999999999999999999999999999999999878999999999999999973
Q ss_pred cCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
+......+...++...++.+..+.+.+++|+++.++..
T Consensus 242 --~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~ 279 (342)
T KOG2160|consen 242 --DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLS 279 (342)
T ss_pred --hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHH
Confidence 55556677888998999999998999999999999763
|
|
| >PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-19 Score=145.36 Aligned_cols=89 Identities=34% Similarity=0.533 Sum_probs=70.9
Q ss_pred CChHHHHhhHhhcCCCCCcccchhcccCCCHHHHHHhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 017926 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQ 155 (363)
Q Consensus 77 ~~l~~LL~wsi~~s~~~~~~~~~~~~~~~~~e~l~~r~~~Lkeal~~l-~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~ 155 (363)
++|+|||||||+||.++...+.+ ...++.+ +|+++..++|..+ ++|+|+++||+++++|.+++.++|+|+.||+
T Consensus 3 ~~l~~LLkWsI~ns~~~~~~~~~-~~~~~~~----~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald 77 (92)
T PF08609_consen 3 PNLNGLLKWSIENSTTSASDAPP-SAEQPDE----ERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALD 77 (92)
T ss_pred HHHHHHHHHHHHcCCCCcccccc-CcCCchh----hhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 57999999999999544422221 1222222 3567777776665 5999999999999999999999999999999
Q ss_pred HHHHcccCCCchhhH
Q 017926 156 ELLILVEPIDNANDL 170 (363)
Q Consensus 156 ~L~~Lve~iDnAn~l 170 (363)
+|++|||+|||||++
T Consensus 78 ~le~LVE~IDNANnl 92 (92)
T PF08609_consen 78 NLEELVENIDNANNL 92 (92)
T ss_pred HHHHHHHcccccccC
Confidence 999999999999985
|
Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity []. |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9e-17 Score=163.80 Aligned_cols=192 Identities=17% Similarity=0.198 Sum_probs=164.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
+...++.|.. ..++.-+..|...|.++..- -+..+.++..|.+|.++.||.+++..|+++|.|+||+++...|.+++.
T Consensus 111 v~~lV~~l~~-~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 111 VPRLVEFLSR-DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred HHHHHHHHcc-CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 3445555543 23456678888888887664 477889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 212 VLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
++++|++++|+.++..+.. ...+.+.|+||++|||..|.-..-.-...++.|..++++. |..+...|+|+|++|+.
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsd- 266 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTD- 266 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhc-
Confidence 9999999999999998765 6789999999999999644333333357889999999987 77899999999999996
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+.++.++.+++.|+++.|+++|.+.+..++-.|+++++
T Consensus 267 ----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 267 ----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG 304 (514)
T ss_pred ----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence 56788999999999999999999999999999999998
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=161.23 Aligned_cols=209 Identities=17% Similarity=0.160 Sum_probs=184.2
Q ss_pred HHHHHHc---CCCC-HHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHHH
Q 017926 118 KELMEKL---KTPS-DAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDI 190 (363)
Q Consensus 118 keal~~l---~~~~-d~~lmk~al~~L~~--~~~s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~I 190 (363)
-+++..| +.|. +.+.++.++.+|.. ...+++....|+..+.+|.+. .+...-..+.|+.+.|+.+|.+.++.+
T Consensus 216 tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v 295 (514)
T KOG0166|consen 216 TWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKV 295 (514)
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccc
Confidence 3556666 2344 45888888888754 345778899999999999965 467788889999999999999999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcC
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~-~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s 269 (363)
+..|..++|+++..+....+.+++.|++|.|..++.++ ...++..|.|.||+|+.|++...++++++|-++.|+.+|++
T Consensus 296 ~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 296 VTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred ccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence 99999999999999999999999999999999999954 45578889999999999999999999999999999999998
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 270 ~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
. +.++|+.|+|+|++++.. ++++....+++.|+|+.++++|...|.++...++.++.
T Consensus 376 ~--ef~~rKEAawaIsN~ts~----g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 376 A--EFDIRKEAAWAISNLTSS----GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLE 432 (514)
T ss_pred c--chHHHHHHHHHHHhhccc----CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHH
Confidence 7 688999999999999984 67889999999999999999998889999888888877
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-15 Score=168.66 Aligned_cols=191 Identities=12% Similarity=0.020 Sum_probs=167.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 136 al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
..+.+++++ +.-.+..+.+.|..++-++.++..|...|++++|+.+|...+.++|..++|+|.+++.+++..++.+.+.
T Consensus 367 LV~Llr~k~-p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ 445 (2102)
T PLN03200 367 LVKLLKPRD-TKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR 445 (2102)
T ss_pred HHHHhCCCC-CchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 444455444 2333577788898999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
|++|.|+++|.+++..++..|+++|+++..+++..+..+.++||++.|+++|.++ +.++|..|+|+|.+|+. .
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~-----~ 518 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCC-----H 518 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhC-----C
Confidence 9999999999999989999999999999999888899999999999999999987 67899999999999995 2
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhh
Q 017926 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFC 334 (363)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~ 334 (363)
.+..+..+.+.|+++.|+++|++++...|+.++.+|..+
T Consensus 519 ~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL 557 (2102)
T PLN03200 519 SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL 557 (2102)
T ss_pred cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 223344455789999999999999999999999998843
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=165.73 Aligned_cols=185 Identities=11% Similarity=0.032 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 146 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
+.|.+..+...|.+++.+ .++...+...||+++|+++|.+++..+|..|+|+|++++..|+..+..+++.|++|+|+++
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 468899999999999966 6778899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhh-----------h
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL-----------E 293 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~-----------~ 293 (363)
|.+++..++..|+|+|+|++.+.+..+..+.++|+++.|+++|++. +.+.|..|++.|.+|+.... .
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 9999999999999999999987555555666889999999999987 67899999999999964210 0
Q ss_pred cCCCC---------------------cchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 294 NMHKV---------------------EPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 294 ~~~~~---------------------~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..++. ........|.++.|+++|++++...++.|+.+|.
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLs 634 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLA 634 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 00000 0111224689999999999999999999999988
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-15 Score=143.14 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=142.0
Q ss_pred HHHHHHHcccCC-CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH-
Q 017926 153 ALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV- 230 (363)
Q Consensus 153 AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~- 230 (363)
|...|.....-- +.-.-.+..|.+|.++++|.+++.+||.+|.|+||+++.+.+.|++.+++.|++.+|+.++.++..
T Consensus 135 AaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ 214 (526)
T COG5064 135 AAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH 214 (526)
T ss_pred HHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch
Confidence 334444433332 233445668999999999999999999999999999999999999999999999999999998665
Q ss_pred -HHHHHHHHHHHHHhcC-Ccc-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCC
Q 017926 231 -EEAVKALYTVSSLIRN-NLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (363)
Q Consensus 231 -~v~~kAL~ALSsLiR~-~~~-a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g 307 (363)
++-+.+.|.||++||+ +|+ ....+ ...+++|..++.+. |..+-..|+|+|++|.. ...+..+.+.+.|
T Consensus 215 ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~--D~evlvDA~WAiSYlsD-----g~~E~i~avld~g 285 (526)
T COG5064 215 ISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSR--DPEVLVDACWAISYLSD-----GPNEKIQAVLDVG 285 (526)
T ss_pred HHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhc--CHHHHHHHHHHHHHhcc-----CcHHHHHHHHhcC
Confidence 6678999999999998 333 22222 24688999999886 66788999999999985 4557788899999
Q ss_pred cHHHHHHhccCCChhHHHHHHHHHH
Q 017926 308 FLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 308 ~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+.|+++|.+++..+|-.++++++
T Consensus 286 ~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 286 IPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CcHHHHHHhcCccccccCHHHHhhc
Confidence 9999999999999999999999998
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-15 Score=142.67 Aligned_cols=210 Identities=17% Similarity=0.126 Sum_probs=181.4
Q ss_pred HHHHHcC-C---CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcccCC-CchhhHHhcCCHHHHHHhcCCCCHHHH
Q 017926 119 ELMEKLK-T---PSDAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIR 191 (363)
Q Consensus 119 eal~~l~-~---~~d~~lmk~al~~L~~--~~~s~e~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~lL~s~~~~Ir 191 (363)
+.++.+. + |.+-..|.+++.+|.. .+.++|....|+.++.++.+-. +....+...|--+-|+++|.|++..|+
T Consensus 223 WtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iq 302 (526)
T COG5064 223 WTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQ 302 (526)
T ss_pred HHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccccc
Confidence 3455552 1 3356778888888754 3457889999999999998875 345566677888899999999999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCC
Q 017926 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (363)
Q Consensus 192 ~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~ 271 (363)
..|.+.+|+++..++...+.++.+|+++.+..+|+++...+|..|.|.||+|..++....+++++.+-+++|+++|.+.
T Consensus 303 tPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a- 381 (526)
T COG5064 303 TPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA- 381 (526)
T ss_pred CHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-
Confidence 9999999999999888788889999999999999998889999999999999999999999999999999999999986
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 272 ~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+-++|..|+|++++..+..+ ..|+.+..++++|+++.|.++|...|..+.|.++.|+.
T Consensus 382 -e~k~kKEACWAisNatsgg~--~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~e 439 (526)
T COG5064 382 -EYKIKKEACWAISNATSGGL--NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIE 439 (526)
T ss_pred -HHHHHHHHHHHHHhhhcccc--CCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHH
Confidence 78999999999999987542 45788999999999999999999888888888888876
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=112.07 Aligned_cols=118 Identities=25% Similarity=0.381 Sum_probs=111.0
Q ss_pred hHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 017926 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 169 ~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~ 248 (363)
.+.+.|+++.++++|.++++.+|..|+++|++++.++|.....+++.|++|.|++++.++++.++..++++|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46789999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred ccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 249 ~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
.....+.+.|+++.|+++++++ +.+++..+++++.+|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 8888888999999999999987 6789999999999987
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=125.04 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcC--cHHHHHHhh
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMV 225 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G--~lp~Ll~LL 225 (363)
..+-.+...|..+.+.-+|.+.++..||+|.|+.++.+.++++|.+++.+|++++-. ...++.+.+.+ .+|.|++|.
T Consensus 182 rvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm 260 (550)
T KOG4224|consen 182 RVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM 260 (550)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH
Confidence 445678999999999999999999999999999999999999999999999999863 45677777887 999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
.++++.++-.|-.||.++..+ ...+..+.++|+++.++++|+++ ..++....++.|.++.. +|-+...+.+
T Consensus 261 d~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisi------hplNe~lI~d 331 (550)
T KOG4224|consen 261 DDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISI------HPLNEVLIAD 331 (550)
T ss_pred hCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhccc------ccCcccceec
Confidence 999999999999999999765 45688899999999999999987 45677788999999985 4555567789
Q ss_pred CCcHHHHHHhccCC-ChhHHHHHHHHHHhhcc
Q 017926 306 RFFLKSVVDLTASA-DLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~-d~~lqE~al~aL~~~~~ 336 (363)
.|+++.||.+|+.+ +.+.|-+|..+|+.++.
T Consensus 332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred ccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 99999999999987 55699999999994443
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=97.61 Aligned_cols=115 Identities=18% Similarity=0.165 Sum_probs=105.0
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+++.|+++.|++++++++..++..++++|++++.+++.....+.+.|+++.|..+|.++ +.+++..+++++++|+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~- 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAA- 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHcc-
Confidence 467899999999999999889999999999999999899999999999999999999986 67899999999999995
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+.....+.+.|+++.+++++..++..++++++.+|.
T Consensus 79 ----~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 79 ----GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred ----CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34456777888999999999999999999999999987
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=118.80 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~ 226 (363)
.+-...+-+++-.+.-+..|.--+.+++|+.+|+..+.++..++|..+..||.+++.- ...+..+...|++.+|.+|-+
T Consensus 99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLak 177 (550)
T KOG4224|consen 99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAK 177 (550)
T ss_pred hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcc
Confidence 3445667778888888889999999999999999999999999999999999999975 557778888999999999988
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhC
Q 017926 227 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 306 (363)
Q Consensus 227 s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~ 306 (363)
+.+..++..+..||+++. |...+++.++..||++.|+.++++. +..+|-.++..|++++. +...+..+.+.
T Consensus 178 skdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIaV------d~~~Rk~Laqa 248 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIAV------DRRARKILAQA 248 (550)
T ss_pred cchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhhh------hHHHHHHHHhc
Confidence 888899999999999996 4567889999999999999999997 55689999999999985 55677888887
Q ss_pred C--cHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 307 F--FLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 307 g--~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
+ +++.|+++...+++.++-.|..||...+.
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 7 99999999999999999999999884444
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=102.07 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=120.3
Q ss_pred HhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 171 SKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 171 ~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
...+.++.|+.+|+ +.+|.++..|..++++.+. .|..|+.+.+.|+++.+..+|.++++.++.+|+.||.++.-+ .+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 34567889999997 5689999999999999875 799999999999999999999999999999999999999765 44
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHH
Q 017926 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFL 329 (363)
Q Consensus 250 a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~ 329 (363)
++..+.. -+-.++.....++ .+..+|..++.+|.+|+. ..+....+. +.++.++.+|.+++..+|.+++.
T Consensus 87 n~~~Ik~-~i~~Vc~~~~s~~-lns~~Q~agLrlL~nLtv------~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 87 NQEQIKM-YIPQVCEETVSSP-LNSEVQLAGLRLLTNLTV------TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred hHHHHHH-HHHHHHHHHhcCC-CCCHHHHHHHHHHHccCC------CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence 5555433 3334444444443 356789999999999985 233334443 47899999999999999999999
Q ss_pred HHH
Q 017926 330 EHV 332 (363)
Q Consensus 330 aL~ 332 (363)
+|.
T Consensus 157 ~L~ 159 (254)
T PF04826_consen 157 VLV 159 (254)
T ss_pred HHH
Confidence 988
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-08 Score=100.38 Aligned_cols=168 Identities=17% Similarity=0.141 Sum_probs=135.9
Q ss_pred HHHHHHcccCCCchhhHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHH
Q 017926 154 LQELLILVEPIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE 231 (363)
Q Consensus 154 L~~L~~Lve~iDnAn~l~~lGgl~~Li~lL--~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~ 231 (363)
.+..-+.+++....-++..+ +....+ .+.+.+=+..|.--|-..+.+ -.....++..|++.+|+.++++++.+
T Consensus 65 ~e~~k~~~~~~~~~~~~~~~----~~~~~~~~~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~ 139 (342)
T KOG2160|consen 65 TEDQKDFVEDMKVISDVMSM----IPIVILNSSSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAE 139 (342)
T ss_pred hhhhhhhcccchhHHHHHHh----hhhhccCcccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHH
Confidence 33344566666666777766 223333 345788888999999999874 44666788999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHH
Q 017926 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 311 (363)
Q Consensus 232 v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~ 311 (363)
+|.+|++-|+.+++|||..|..+++.||++.|+..+.++. +..+|.||.+++++|.. .++.....|...+....
T Consensus 140 lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~-~~~~r~kaL~AissLIR-----n~~~g~~~fl~~~G~~~ 213 (342)
T KOG2160|consen 140 LRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDD-PNTVRTKALFAISSLIR-----NNKPGQDEFLKLNGYQV 213 (342)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCC-CchHHHHHHHHHHHHHh-----cCcHHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999764 56789999999999997 46666677777777899
Q ss_pred HHHhccC--CChhHHHHHHHHHH
Q 017926 312 VVDLTAS--ADLDLQEKVFLEHV 332 (363)
Q Consensus 312 Lv~lL~~--~d~~lqE~al~aL~ 332 (363)
|.++|++ .+..++.+++.-+.
T Consensus 214 L~~vl~~~~~~~~lkrK~~~Ll~ 236 (342)
T KOG2160|consen 214 LRDVLQSNNTSVKLKRKALFLLS 236 (342)
T ss_pred HHHHHHcCCcchHHHHHHHHHHH
Confidence 9999998 46777787776655
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-08 Score=107.62 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=143.0
Q ss_pred HHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH
Q 017926 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (363)
Q Consensus 151 ~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~ 230 (363)
..++--|..+.++..+-..+.+.|++++|+++|++++.++...+..+|..++-. ++++..+.+.|++|+|++++.+++.
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCH
Confidence 346667889999999999999999999999999999999999999999999974 5589999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHH
Q 017926 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~ 310 (363)
.+...++..|.|+.- ++..+..+++.|.++.|+.+|.+++ .+.-+..++++|+. ++..+..|...+.++
T Consensus 346 ~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~----~~~val~iLy~LS~------dd~~r~~f~~TdcIp 414 (708)
T PF05804_consen 346 DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN----FREVALKILYNLSM------DDEARSMFAYTDCIP 414 (708)
T ss_pred HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc----hHHHHHHHHHHhcc------CHhhHHHHhhcchHH
Confidence 888889999999864 5677899999999999999998752 45668889999984 667788888889999
Q ss_pred HHHHhccCC-ChhHHHHHHHHHH
Q 017926 311 SVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 311 ~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
.++++|-.. +..++..++..+.
T Consensus 415 ~L~~~Ll~~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 415 QLMQMLLENSEEEVQLELIALLI 437 (708)
T ss_pred HHHHHHHhCCCccccHHHHHHHH
Confidence 999987654 5555433333333
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-08 Score=104.51 Aligned_cols=189 Identities=15% Similarity=0.126 Sum_probs=157.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 136 al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
.+..|++. +.|....+.+.|..+.+..+-..- .-+..+.|...|.|+++.||..+++.|+.+++++....+.+.+.
T Consensus 43 lf~~L~~~--~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTS--NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhc--ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 44445533 556677778888888887754444 33456778889999999999999999999999998888888899
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
+.++.++.++.+++.++...|+.+|+.++++ ++..+.++..++...|..++..+ +..+|.++..++..++. .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~-----~ 190 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIAS-----H 190 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHh-----c
Confidence 9999999999999999999999999999985 56677788888999999999875 34578899999999986 4
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
.++..+.+.+.|+++.++..|.++|.-+|..++..+...+.
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 66778888899999999999999999999999998884444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=92.87 Aligned_cols=172 Identities=10% Similarity=0.125 Sum_probs=133.8
Q ss_pred CCchhhHHhcCCHHHHHHhcCC-CCHHHH---HHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC--CCHHHHHHHH
Q 017926 164 IDNANDLSKLGGLSVLVGQLNH-PDTDIR---KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKAL 237 (363)
Q Consensus 164 iDnAn~l~~lGgl~~Li~lL~s-~~~~Ir---~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s--~~~~v~~kAL 237 (363)
.+....+...||+..|++++.+ .+.+.| ..++..|..++. |+.+...+++.|+++.++.++.. +++.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 3445667779999999999975 555555 667777777775 67799999999999999998863 4567778888
Q ss_pred HHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc
Q 017926 238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (363)
Q Consensus 238 ~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (363)
-+||-++=-.|+.-..|++.||-...++.|+.....-.+|+.++++|.+++.. ..+++..+...|+ ..|+..-+
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-----s~~~~~~~l~~Gi-E~Li~~A~ 425 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-----SAENRTILLANGI-EKLIRTAK 425 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-----hhhccchHHhccH-HHHHHHHH
Confidence 88998877789999999999999999999986544567999999999999973 4456667776554 77777777
Q ss_pred CCChhHHHHHHHHHHhhcccccCchhhhhH
Q 017926 318 SADLDLQEKVFLEHVFCGLVFCTCPCIVRG 347 (363)
Q Consensus 318 ~~d~~lqE~al~aL~~~~~~~~~~~~~~r~ 347 (363)
..+.++...+-.||. ..-|.-..|+
T Consensus 426 ~~h~tce~~akaALR-----DLGc~v~lre 450 (461)
T KOG4199|consen 426 ANHETCEAAAKAALR-----DLGCDVYLRE 450 (461)
T ss_pred hcCccHHHHHHHHHH-----hcCcchhhHH
Confidence 778888877777766 3335555543
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-07 Score=99.06 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=159.0
Q ss_pred HHHHHHHHHcCCCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCc-hhhHHhcCCHHHHHHhcCCCCHHHHH
Q 017926 115 MEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRK 192 (363)
Q Consensus 115 ~~Lkeal~~l~~~~-d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDn-An~l~~lGgl~~Li~lL~s~~~~Ir~ 192 (363)
+-|+..++.+...+ ..+.+.....-|.++ ++..|..++..+..+++..+. +.-+...+.++.++.+|.+++.++..
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~ 137 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAK 137 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHH
Confidence 44555665443322 234444455556554 468888899999999888766 44556678899999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCc
Q 017926 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 272 (363)
Q Consensus 193 ~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~ 272 (363)
.|+.+|..++.+.+.. +.+++.+.++.|.+++..++..+|.+++..+..+.+.++.......+.|-++.++..+.++
T Consensus 138 ~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-- 214 (503)
T PF10508_consen 138 AAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-- 214 (503)
T ss_pred HHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc--
Confidence 9999999999866554 4577888899999999987888899999999999999999998899999999999999985
Q ss_pred cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC
Q 017926 273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (363)
Q Consensus 273 ~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 319 (363)
|.-+|..++-++..|+. .++..+.+.+.|+++.|++++...
T Consensus 215 DiLvqlnalell~~La~------~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 215 DILVQLNALELLSELAE------TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred cHHHHHHHHHHHHHHHc------ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 88899999999999994 567788999999999999999865
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-07 Score=86.27 Aligned_cols=185 Identities=19% Similarity=0.122 Sum_probs=139.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
+-+++.+..|... .++.-+..++-.+.......-+.+-+.+.||++++..+|+++++.+|..|.++|.+++.+ .+.|.
T Consensus 12 ~~l~~Ll~lL~~t-~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~ 89 (254)
T PF04826_consen 12 QELQKLLCLLEST-EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQE 89 (254)
T ss_pred HHHHHHHHHHhcC-CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHH
Confidence 3345555555532 244556666666666655566677788899999999999999999999999999999864 55777
Q ss_pred HHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 211 QVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~--~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
.+-. .++.+++...+. +.+++..++.+|.++...+ ..+..+. +.++.+.++|.+. +.++|..++.+|.+|+
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G--~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSG--SEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcC--ChHHHHHHHHHHHHhc
Confidence 6543 588888866654 4578899999999997653 3355554 5788899999987 5678999999999998
Q ss_pred hhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHH
Q 017926 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLE 330 (363)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~a 330 (363)
. ++.....+....++..++.++... +.++...++.-
T Consensus 163 ~------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~ 199 (254)
T PF04826_consen 163 E------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTF 199 (254)
T ss_pred c------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHH
Confidence 4 777788888889999999999875 45544444433
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-07 Score=98.87 Aligned_cols=158 Identities=23% Similarity=0.253 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
+.+-...++.-|..|.-..+|...+...|.+++|++++.+++.+++..|.++|.+++. ++..+..+++.|++|+|+.+|
T Consensus 303 n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL 381 (708)
T PF05804_consen 303 NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELL 381 (708)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHh
Confidence 5677777888888888888999999999999999999999999999999999999997 567899999999999999999
Q ss_pred cCCCH-HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 226 KSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 226 ~s~~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
.+++. .+..+.+|.||. .+.+...|...+.++.|+.++-+.+ +.++...++.++.+|+. ++...+.+.
T Consensus 382 ~d~~~~~val~iLy~LS~----dd~~r~~f~~TdcIp~L~~~Ll~~~-~~~v~~eliaL~iNLa~------~~rnaqlm~ 450 (708)
T PF05804_consen 382 KDPNFREVALKILYNLSM----DDEARSMFAYTDCIPQLMQMLLENS-EEEVQLELIALLINLAL------NKRNAQLMC 450 (708)
T ss_pred CCCchHHHHHHHHHHhcc----CHhhHHHHhhcchHHHHHHHHHhCC-CccccHHHHHHHHHHhc------CHHHHHHHH
Confidence 97653 334455555544 3567889998999999999876542 45567778888888885 333344444
Q ss_pred hCCcHHHHHHh
Q 017926 305 DRFFLKSVVDL 315 (363)
Q Consensus 305 ~~g~v~~Lv~l 315 (363)
+.|.++.|++.
T Consensus 451 ~g~gL~~L~~r 461 (708)
T PF05804_consen 451 EGNGLQSLMKR 461 (708)
T ss_pred hcCcHHHHHHH
Confidence 44444444433
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-07 Score=96.78 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=127.9
Q ss_pred CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 017926 164 IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (363)
Q Consensus 164 iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsL 243 (363)
++++..+-..-....+....-..+.+.+..|+.|+-+++..-...+.-+-...+..+|++++..++..++..++.||+|+
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~Nl 446 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNL 446 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence 66666666544334444444567888888888888877754333333333346889999999888888999999999999
Q ss_pred hcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhH
Q 017926 244 IRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDL 323 (363)
Q Consensus 244 iR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~l 323 (363)
|-.+.+-+..|++.||++.|...+.++ +..+|.++.|+++++... .++..+..+...-....++.+...+|..+
T Consensus 447 Vmefs~~kskfl~~ngId~l~s~~~~~--~~n~r~~~~~~Lr~l~f~----~de~~k~~~~~ki~a~~i~~l~nd~d~~V 520 (678)
T KOG1293|consen 447 VMEFSNLKSKFLRNNGIDILESMLTDP--DFNSRANSLWVLRHLMFN----CDEEEKFQLLAKIPANLILDLINDPDWAV 520 (678)
T ss_pred HhhcccHHHHHHHcCcHHHHHHHhcCC--CchHHHHHHHHHHHHHhc----chHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence 999999999999999999999999987 566899999999999973 45555555555556677778888889999
Q ss_pred HHHHHHHHH
Q 017926 324 QEKVFLEHV 332 (363)
Q Consensus 324 qE~al~aL~ 332 (363)
||+++..|.
T Consensus 521 qeq~fqllR 529 (678)
T KOG1293|consen 521 QEQCFQLLR 529 (678)
T ss_pred HHHHHHHHH
Confidence 999999988
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-06 Score=92.02 Aligned_cols=194 Identities=16% Similarity=0.155 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC--CCchhhHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhc
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP--IDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQ 203 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~--iDnAn~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aq 203 (363)
.+..-.||+.+.-|.+.+ ++-..+.|+-+|.+++-. .|.-.-|----.+|.|+.+|++ .+.+|...||++|.+++.
T Consensus 163 ~sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 163 SSASSKAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred ccchHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 345568999999998765 555565555555543321 1111122222356788899987 479999999999999999
Q ss_pred cChHHHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 204 NNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 204 NNp~~Q~~~le~G~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
--|.+-..++++++||.|+.-|. -+-..++..+|.||--|-|.|+ .++.++||+...+..|.=- ++-.|++|+.
T Consensus 242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFF--Si~aQR~Ala 316 (1051)
T KOG0168|consen 242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFF--SIHAQRVALA 316 (1051)
T ss_pred hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHH--HHHHHHHHHH
Confidence 99999999999999999996554 4557889999999999999887 5678999999888887644 4568999999
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
...|.|.. ..++....+. ..+|.|..+|+..|....|.++.|+-
T Consensus 317 iaaN~Cks----i~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ 360 (1051)
T KOG0168|consen 317 IAANCCKS----IRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLT 360 (1051)
T ss_pred HHHHHHhc----CCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHH
Confidence 99999974 3455555554 47899999999999999999888865
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-05 Score=78.35 Aligned_cols=186 Identities=13% Similarity=0.067 Sum_probs=144.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcccCC----------CchhhHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChH
Q 017926 139 DLNNSTLSLEDSQRALQELLILVEPI----------DNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL 207 (363)
Q Consensus 139 ~L~~~~~s~e~k~~AL~~L~~Lve~i----------DnAn~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~ 207 (363)
+|+..+.+ +....+.+.+.-|+-+. ..|+.|.+.||+..|++.|+. -+|++...++..|++++-+|+.
T Consensus 197 ~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~ 275 (461)
T KOG4199|consen 197 VLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEI 275 (461)
T ss_pred HHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHH
Confidence 44444444 33344556666665543 458999999999999999964 5799999999999999999887
Q ss_pred HHHHHHHcCcHHHHHHhhcCCC-HHHH---HHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 017926 208 VQKQVLELGALSKLMKMVKSSF-VEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s~~-~~v~---~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~l 283 (363)
||. +.+.||+..|+.++.+.+ ...| ..++.-|+.+. ++......+++.||.+.|+.++....+++.+-..++..
T Consensus 276 C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 276 CKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence 776 689999999999999854 3444 45677777765 56778899999999999999976555677788888888
Q ss_pred HHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHH
Q 017926 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHV 332 (363)
Q Consensus 284 L~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~ 332 (363)
++-||- -.|+....+++.|.-...++-++.. ...+|..+..++.
T Consensus 354 i~~l~L-----R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IR 399 (461)
T KOG4199|consen 354 ISILCL-----RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIR 399 (461)
T ss_pred HHHHHh-----cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 888885 3567777888999999889888753 5678888887776
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.7e-06 Score=80.36 Aligned_cols=181 Identities=18% Similarity=0.163 Sum_probs=130.5
Q ss_pred CCHHHHHHHHHHHHHcccCC-CchhhHHhcC------CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCc
Q 017926 145 LSLEDSQRALQELLILVEPI-DNANDLSKLG------GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 217 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~i-DnAn~l~~lG------gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~ 217 (363)
...+-..-.|--+.+++.+. ....-|.... -+.+++++++++|.-++..|+.+++.+....+....... .+.
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~ 147 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEA 147 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHH
Confidence 34566666777777777665 5666666632 589999999999999999999999999887665555433 567
Q ss_pred HHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh-----cCCCccHHHHHHHHHHHHHHh
Q 017926 218 LSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-----GNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 218 lp~Ll~LL~s~----~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL-----~s~~~~~klr~kA~~lL~~L~ 288 (363)
++.+++.+++. +.+++.-++.+++.++|. +..+..|.+.||++.|..++ .+.+.+..++=.+++.+--|+
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence 89999888863 234578899999999985 77899999999999999999 344456778888888888887
Q ss_pred hhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHHh
Q 017926 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHVF 333 (363)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~~ 333 (363)
. +++..+.+.+.++++.|+++++.. ...+.--++.++..
T Consensus 227 F------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~N 266 (312)
T PF03224_consen 227 F------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRN 266 (312)
T ss_dssp T------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred c------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 5 567778888899999999999865 55666666777663
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-05 Score=75.05 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHH
Q 017926 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~ 265 (363)
+..+...|..+|--++-.+|.+|..|..+.++..|+.+|.. ..+.++..++.+|.+++.++|.++..|-+.+|+..+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 34456778999999999999999999999999999999954 45788999999999999999999999999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHh
Q 017926 266 ILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 266 lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
++++.+.+..+|.|.+-++.-..
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHH
Confidence 99999888889999886665444
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-06 Score=57.16 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=38.4
Q ss_pred ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 017926 205 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245 (363)
Q Consensus 205 Np~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR 245 (363)
||+.++.+++.|++|+|+++|++++..++..|+|||++|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999999999999999975
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.9e-05 Score=81.70 Aligned_cols=182 Identities=21% Similarity=0.235 Sum_probs=146.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCC------c-----------hhhHHhc-CCHHHHHHhcCCCCHHHHHH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------N-----------ANDLSKL-GGLSVLVGQLNHPDTDIRKI 193 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iD------n-----------An~l~~l-Ggl~~Li~lL~s~~~~Ir~~ 193 (363)
-|+-.+.+|...-.++|-.-.+||.+..++..-| + |..|++. +-+..++..+...+=.||.+
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~ 141 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLY 141 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhH
Confidence 3677777777666666777777777777665543 2 4556655 45667778899999999999
Q ss_pred HHHHHHHHhcc-ChHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCC
Q 017926 194 SAWILGKASQN-NPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (363)
Q Consensus 194 Aa~~Lgt~aqN-Np~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~ 271 (363)
|...|.++..+ -++.|+.++.. -+|..|+.+|.+.-..+|-.+++-|+.++|+++.-|+.+.=.+.+.-|..++....
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999998875 45889988877 78999999999987888999999999999999887777777799999999987542
Q ss_pred -c-cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccC
Q 017926 272 -F-EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (363)
Q Consensus 272 -~-~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~ 318 (363)
. .--+...+++++.+|.. .+..+...|.+.+.+++|..+|..
T Consensus 222 g~dGgIVveDCL~ll~NLLK-----~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLK-----NNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred CCCCcchHHHHHHHHHHHHh-----hCcchhhHHhccccHHHHHhhcCc
Confidence 1 22477899999999996 477889999999999999999874
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.5e-05 Score=73.20 Aligned_cols=166 Identities=10% Similarity=0.033 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~ 212 (363)
+++.+..|.+. +...|..|...|..+=+ -..++.+..+++++++.+|..|+++||.+-... ..+.
T Consensus 25 ~~~L~~~L~d~--d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~-- 89 (280)
T PRK09687 25 DDELFRLLDDH--NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQD-- 89 (280)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchH--
Confidence 44455555443 34556666555543311 123455566666777777777777777653211 1111
Q ss_pred HHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCcccHHH-----------------------HH---hcCcHHHHHH
Q 017926 213 LELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEM-----------------------FY---VEAGDLMLQD 265 (363)
Q Consensus 213 le~G~lp~Ll~L-L~s~~~~v~~kAL~ALSsLiR~~~~a~~~-----------------------f~---~~gG~~~L~~ 265 (363)
..+|.|..+ +++++..||..|+.+|+.+.......... +. ....++.|+.
T Consensus 90 ---~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~ 166 (280)
T PRK09687 90 ---NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN 166 (280)
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 245666655 34444566666666666653322100000 00 0124566666
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 266 lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+|.++ +..+|..|++.|..+.. . ....++.|+..|...+.+++..|..+|.
T Consensus 167 ~L~d~--~~~VR~~A~~aLg~~~~-----~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 167 LLKDP--NGDVRNWAAFALNSNKY-----D---------NPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred HhcCC--CHHHHHHHHHHHhcCCC-----C---------CHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 66654 33466666666666531 0 1346677888888778888888888877
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.1e-05 Score=83.68 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=114.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCC
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~ 296 (363)
-+|..+.||.+..+.++..|.+-|--++.++......+.+.||+..|+.+|.++ ...+++.|++++.+|.... .+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~~---~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFGK---ST 308 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhccc---CC
Confidence 478899999998899999999999999999999999999999999999999998 4669999999999999742 34
Q ss_pred CCcchhHHhCCcHHHHHHhccC-CChhHHHHHHHHHHhhcccccCchhhhhHHHHH-HhhhhcccccC
Q 017926 297 KVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKVFLEHVFCGLVFCTCPCIVRGAVIV-AEYIYINFSAF 362 (363)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~-~d~~lqE~al~aL~~~~~~~~~~~~~~r~~~l~-~~~~~~~~~~~ 362 (363)
.+..-.+.+.+.|+.++.+|+. .|.+++|.+...||.++.....|....++.+-+ .++..+.++.|
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw 376 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGW 376 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhccccccc
Confidence 4577788899999999999997 599999999999995555433445555554433 33444455544
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-05 Score=72.41 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=114.8
Q ss_pred hcCCCCHHHHHHHHHHHHHcccCC---CchhhHHh-c-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 141 NNSTLSLEDSQRALQELLILVEPI---DNANDLSK-L-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 141 ~~~~~s~e~k~~AL~~L~~Lve~i---DnAn~l~~-l-Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
.+.+.+=+.|..+++.|..++... +....|.. + ..+..++..+++....|...|+.+++.++..-..--+.+ -.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-AD 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence 456667889999999999988766 45555543 2 345677788888888999999999999998533322222 23
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
..+|.|++.+.+++..++..|..+|-.++++.+.... ++ ...+...+.++ +..+|..++..+..++..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~~----~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~----- 161 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-IL----LEILSQGLKSK--NPQVREECAEWLAIILEK----- 161 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-HH----HHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-HH----HHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-----
Confidence 5799999999998888899999999999998651111 11 45566666766 577899999998888753
Q ss_pred CCCcchhHHh----CCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 296 HKVEPPLFRD----RFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 296 ~~~~~~~l~~----~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+.....+.. ..+++.+..++...++++|+.|-.+++
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLW 202 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 2211122222 357788888999999999999999988
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=70.61 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcc-------------------C
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQN-------------------N 205 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~l-L~s~~~~Ir~~Aa~~Lgt~aqN-------------------N 205 (363)
++..|..|...|.++-..... .-..++.|..+ ++++++.||..|+.+||.+... +
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCC
Confidence 456666666666654321110 01134445544 4556666777777776665321 2
Q ss_pred hHHHHHHHH-------cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 017926 206 PLVQKQVLE-------LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278 (363)
Q Consensus 206 p~~Q~~~le-------~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~ 278 (363)
+.++..++. ..+++.|+.+|++++..+|..|+++|+.+--+++ ..++.|+.+|.+. +..+|.
T Consensus 142 ~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~--~~~VR~ 210 (280)
T PRK09687 142 TNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK--NEEIRI 210 (280)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC--ChHHHH
Confidence 233333322 1368888999988888889999999998811111 4677899999877 566899
Q ss_pred HHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 279 kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.|++.|..+- +..+++.|++.|..++ ++..+..||+
T Consensus 211 ~A~~aLg~~~----------------~~~av~~Li~~L~~~~--~~~~a~~ALg 246 (280)
T PRK09687 211 EAIIGLALRK----------------DKRVLSVLIKELKKGT--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHccC----------------ChhHHHHHHHHHcCCc--hHHHHHHHHH
Confidence 9999987753 2368899999999876 6677888888
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=58.34 Aligned_cols=55 Identities=18% Similarity=0.359 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 017926 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (363)
Q Consensus 188 ~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsL 243 (363)
+.+|..|+|+||++++..+...+. ....++|.|+.+|+++++.||..|++||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999999988877666 3457899999999998899999999999975
|
... |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.5e-05 Score=61.04 Aligned_cols=87 Identities=20% Similarity=0.268 Sum_probs=69.3
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHH
Q 017926 176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (363)
Q Consensus 176 l~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f 254 (363)
++.|++.| +++++.+|..|+++||..- . ..++|.|+++++++++.+|..|+++|+.+ +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i--~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--D---------PEAIPALIELLKDEDPMVRRAAARALGRI--G-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--H---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC--H--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh--C--------
Confidence 57899988 8899999999999999442 1 14599999999998999999999999977 1
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 017926 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (363)
Q Consensus 255 ~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~ 285 (363)
....++.|..++.+++ +..+|..|+..|+
T Consensus 60 -~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 3448889999998874 4556777777653
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.9e-05 Score=81.00 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=102.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc--cHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQEM 253 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~--a~~~ 253 (363)
+|-.+.+|.+.++.++..|+.-|-.++-.+.++...+.+.|+||+|+.+|.+...+|+..|++||=+++=+... +.-+
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 56778899999999999999999999999999999999999999999999999999999999999999987655 7778
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+.++||+..++++|+... |..++..++-++-+|.+
T Consensus 315 i~~~~Gv~~l~~~Lr~t~-D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQ-DDEVRELITGILWNLSS 349 (717)
T ss_pred hhhcCChHHHHHHHHhhc-chHHHHHHHHHHhcccc
Confidence 889999999999999643 45688899999888875
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00084 Score=74.74 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhh---------hhcCCCCcch-------hHHhCCcHHHHHHhccCCChhH
Q 017926 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---------LENMHKVEPP-------LFRDRFFLKSVVDLTASADLDL 323 (363)
Q Consensus 260 ~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~---------~~~~~~~~~~-------~l~~~g~v~~Lv~lL~~~d~~l 323 (363)
++.|..+++++ +..+|..|+..|..+-... +...+...+. .+-....++.|+.+|..++..+
T Consensus 777 ~~~L~~ll~D~--d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~V 854 (897)
T PRK13800 777 GDAVRALTGDP--DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDV 854 (897)
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHH
Confidence 45666666665 4556777776666553210 0011111111 1112356688899999999999
Q ss_pred HHHHHHHHH
Q 017926 324 QEKVFLEHV 332 (363)
Q Consensus 324 qE~al~aL~ 332 (363)
|..|+.+|.
T Consensus 855 R~~A~~aL~ 863 (897)
T PRK13800 855 RKAAVLALT 863 (897)
T ss_pred HHHHHHHHh
Confidence 999999988
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00096 Score=71.92 Aligned_cols=258 Identities=17% Similarity=0.142 Sum_probs=176.2
Q ss_pred CCChHHHHhhHhhcCCCCCcccchhcccCC-CHH-HHHHhHHHHHHHHHHcCCCC----HH-HHHHHHHHHhhcCCCCHH
Q 017926 76 FSSIDGMLQWAIGHSDPAKLKETAQDVQRL-SPS-ELKKRQMEIKELMEKLKTPS----DA-QLIQIAIDDLNNSTLSLE 148 (363)
Q Consensus 76 ~~~l~~LL~wsi~~s~~~~~~~~~~~~~~~-~~e-~l~~r~~~Lkeal~~l~~~~----d~-~lmk~al~~L~~~~~s~e 148 (363)
+|.+..+|+-.++.+...+.+---+..+.- ||- .+ ++-.++-|.+...+..+ ++ .++.-.+..|+ .+...|
T Consensus 150 gprv~~ll~rt~~~sasSk~kkLL~gL~~~~Des~Ql-eal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~-~E~n~D 227 (1051)
T KOG0168|consen 150 GPRVLQLLHRTIGSSASSKAKKLLQGLQAESDESQQL-EALTELCEMLSMGNEESLSGFPVKSLVPVLVALLS-HEHNFD 227 (1051)
T ss_pred chhHHHHhhhcccccchHHHHHHHHhccccCChHHHH-HHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHh-ccccHH
Confidence 456777778777777766532111111111 221 11 13333334333221111 11 22333344444 455788
Q ss_pred HHHHHHHHHHHcccCC-CchhhHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc
Q 017926 149 DSQRALQELLILVEPI-DNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (363)
Q Consensus 149 ~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~ 226 (363)
-...|...|.+|+|-. .-..-.+..+.+|.|+. |+.-+.-++-+++..+|-.+.+.+|+ ++++.|+|...+..|+
T Consensus 228 IMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylD 304 (1051)
T KOG0168|consen 228 IMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLD 304 (1051)
T ss_pred HHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHH
Confidence 8999999999999976 34455667789999985 66778999999999999999998874 6889999999999998
Q ss_pred CCCHHHHHHHHHHHHHHhcCC-cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 227 SSFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 227 s~~~~v~~kAL~ALSsLiR~~-~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
--+..++++|+.-.+|+|..- ++..+-|. ..+++|..+|+.. +.+.-..++-.+..++... .+.++..+.+..
T Consensus 305 FFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~--D~k~ies~~ic~~ri~d~f--~h~~~kLdql~s 378 (1051)
T KOG0168|consen 305 FFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQ--DKKPIESVCICLTRIADGF--QHGPDKLDQLCS 378 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc--ccChHHHHHHhc
Confidence 777888999999999999884 33333333 6799999999875 5566777777777777532 356778889999
Q ss_pred CCcHHHHHHhccCCC----hhHHHHHHHHHHhhcccccCchhhhhH
Q 017926 306 RFFLKSVVDLTASAD----LDLQEKVFLEHVFCGLVFCTCPCIVRG 347 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d----~~lqE~al~aL~~~~~~~~~~~~~~r~ 347 (363)
.|++....++|.... ..+---..+.|. +++..|+..+|+
T Consensus 379 ~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls---~msS~~pl~~~t 421 (1051)
T KOG0168|consen 379 HDLITNIQQLLSVTPTILSNGTYTGVIRMLS---LMSSGSPLLFRT 421 (1051)
T ss_pred hhHHHHHHHHHhcCcccccccchhHHHHHHH---HHccCChHHHHH
Confidence 999999999998652 233333344444 677778888886
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0016 Score=66.55 Aligned_cols=195 Identities=12% Similarity=0.038 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC-CchhhHHhc-----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnAn~l~~l-----Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq 203 (363)
....+-.+..+... ...+-..-.|--+.+++... ..++-|... .-+.+++.+|++++.-|...|+.+|+.+++
T Consensus 52 ~~y~~~~l~ll~~~-~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQI-DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence 44555555555543 33455555666666666553 335566654 578899999999999999999999999987
Q ss_pred cChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 204 NNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 204 NNp~~Q~~~le~G~lp~Ll~LL~s~-~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
-.+.........-.++-|...+++. +...+.-++.+++.++|. +..+..|.+.+|++.|+.+|+....+..++=.+++
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 5443222211111344556666654 345577788999999996 56678899999999999999875435667888888
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHH
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
.+=-|+. ++...+.+...++++.++++++.. -..+...++.++.
T Consensus 210 ~lWlLSF------~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~ 254 (429)
T cd00256 210 CIWLLTF------NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFR 254 (429)
T ss_pred HHHHHhc------cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8887775 233555667789999999999874 3333333444444
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.7e-05 Score=54.20 Aligned_cols=38 Identities=32% Similarity=0.691 Sum_probs=35.3
Q ss_pred CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 017926 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (363)
Q Consensus 165 DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~a 202 (363)
++...+.+.||+|+|+.+|++++++++..|+|+|++++
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999987
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0015 Score=72.82 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=89.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHH----------hccChHHHHHHHHc---------CcHHHHHHhhcCCCHHHHHH
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKA----------SQNNPLVQKQVLEL---------GALSKLMKMVKSSFVEEAVK 235 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~----------aqNNp~~Q~~~le~---------G~lp~Ll~LL~s~~~~v~~k 235 (363)
-...++..|.++++.+|..|+.+|+.+ ...++.++..+.+. ..++.|+.+++++++.+|..
T Consensus 715 ~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 715 DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHH
Confidence 345666777777778887777777753 22355566554432 23688999999988889999
Q ss_pred HHHHHHHHhcCCcc------------------cHHHHHhc---CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhc
Q 017926 236 ALYTVSSLIRNNLA------------------GQEMFYVE---AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (363)
Q Consensus 236 AL~ALSsLiR~~~~------------------a~~~f~~~---gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~ 294 (363)
|+.+|+.+-..... +...+... ..++.|+.+|+++ +..+|..|+..|..+-
T Consensus 795 A~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~~------ 866 (897)
T PRK13800 795 ALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDP--HLDVRKAAVLALTRWP------ 866 (897)
T ss_pred HHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCC--CHHHHHHHHHHHhccC------
Confidence 99999876321100 00111111 2345666666665 4556677776666542
Q ss_pred CCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 295 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 295 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
. +....+.|...|+.+|.+++..|..||.
T Consensus 867 ~---------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 G---------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C---------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 1234677788888889999999998875
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0023 Score=65.99 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=114.0
Q ss_pred CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
.+.+.|..+.-.+..+.+... ++..+ .+..+.+-|+++++.+|..|..+|++++ +|+.-+. .+|.+.++
T Consensus 54 ~~~~~Krl~yl~l~~~~~~~~---~~~~l-~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~l 122 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHEDP---ELLIL-IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKL 122 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTTSH---HHHHH-HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcch---hHHHH-HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHH
Confidence 356667666666666544432 23333 4666777788899999999999999987 5655544 47888899
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
+.++++.||.+|+.|+..+.+.+|...... -++.|..+|.++ +..++..|+.++..+ . .++.... -.
T Consensus 123 l~~~~~~VRk~A~~~l~~i~~~~p~~~~~~----~~~~l~~lL~d~--~~~V~~~a~~~l~~i-~-----~~~~~~~-~~ 189 (526)
T PF01602_consen 123 LSDPSPYVRKKAALALLKIYRKDPDLVEDE----LIPKLKQLLSDK--DPSVVSAALSLLSEI-K-----CNDDSYK-SL 189 (526)
T ss_dssp HHSSSHHHHHHHHHHHHHHHHHCHCCHHGG----HHHHHHHHTTHS--SHHHHHHHHHHHHHH-H-----CTHHHHT-TH
T ss_pred hcCCchHHHHHHHHHHHHHhccCHHHHHHH----HHHHHhhhccCC--cchhHHHHHHHHHHH-c-----cCcchhh-hh
Confidence 999888999999999999998877654321 378899998765 567888888888888 2 1212111 11
Q ss_pred hCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 305 DRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
-..+++.|..++...++-.|.++++.+.
T Consensus 190 ~~~~~~~L~~~l~~~~~~~q~~il~~l~ 217 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPDPWLQIKILRLLR 217 (526)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 2344555555556779999999999988
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0002 Score=72.23 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHHHHHhccChHHHHHHHH----cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc
Q 017926 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLE----LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (363)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le----~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG 259 (363)
...+..++..++.|++..+. ||.-+..|.+ .+++..|.+...+++.++-.....||+++|-.+.+++.+|.+.||
T Consensus 52 ~~~~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG 130 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG 130 (604)
T ss_pred eeccchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence 44577899999999999984 5655555654 477889999999988889999999999999999999999999999
Q ss_pred HHHHHHhhcCC-----CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHH
Q 017926 260 DLMLQDILGNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEH 331 (363)
Q Consensus 260 ~~~L~~lL~s~-----~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL 331 (363)
-++++..|+.- ..+.++-.-+..++.+... .+.+.+..+.+.|+++.|+..+--+ +..+.|+.+...
T Consensus 131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l-----~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f 204 (604)
T KOG4500|consen 131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL-----DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPF 204 (604)
T ss_pred ceehHhhhccccccCCccHHHHHHHHHHHHHHhhC-----CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhcc
Confidence 88888887642 1123454555556666653 4667788899999999999998765 677778776663
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00078 Score=65.85 Aligned_cols=174 Identities=18% Similarity=0.128 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~L 221 (363)
+.--...|+..|..++..-+....-...+.++.++..|.+ ++.+++..|..+++.+.. ++..+..|.+.|+++.|
T Consensus 118 D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l 196 (312)
T PF03224_consen 118 DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPL 196 (312)
T ss_dssp SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHH
Confidence 4445666777777776665443333223456777766653 567788999999999995 78899999999999999
Q ss_pred HHhh-----cCCC--HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhc
Q 017926 222 MKMV-----KSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (363)
Q Consensus 222 l~LL-----~s~~--~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~ 294 (363)
..++ .+.. ..++..+++++=.+. -++.....+.+.+-++.|..+++... ..|+-|-+...+.||+..
T Consensus 197 ~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~---- 270 (312)
T PF03224_consen 197 FDILRKQATNSNSSGIQLQYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLAILRNLLSK---- 270 (312)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSS----
T ss_pred HHHHHhhcccCCCCchhHHHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHHHHHHHHhc----
Confidence 9999 2222 245667777777664 35677788888888999999998764 578889999999999952
Q ss_pred CCCCcchhHHhCCcHHHHHHhccCC--ChhHHHH
Q 017926 295 MHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEK 326 (363)
Q Consensus 295 ~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~ 326 (363)
......+.++..|+++.+-.+.... |+++.|-
T Consensus 271 ~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 271 APKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 2334778888888887777776653 8888763
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0022 Score=66.10 Aligned_cols=182 Identities=17% Similarity=0.175 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh
Q 017926 129 DAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (363)
Q Consensus 129 d~~lmk~al~~L~~--~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp 206 (363)
+.+.+.-++..+.. .+.++..+..||..+..+. ..+.++. .++.+.++|.++++.||..|+.++..+.+.+|
T Consensus 73 ~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 73 DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH
T ss_pred chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCH
Confidence 44544445544432 1236778899999999865 3333433 36788899999999999999999999999888
Q ss_pred HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 207 ~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
..-. .. .++.|.++|.+.++.++..|+.++..+ +.++.....+. ..-+..|..++..+ ++-++.+++.++..
T Consensus 147 ~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~--~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 147 DLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDP--DPWLQIKILRLLRR 218 (526)
T ss_dssp CCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCC--SHHHHHHHHHHHTT
T ss_pred HHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhccccc--chHHHHHHHHHHHh
Confidence 6432 22 699999999988899999999999999 55444322111 22355556666554 88887777766553
Q ss_pred HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+ .+..........+++.+..++++.+..+.-.+..++.
T Consensus 219 ~--------~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 219 Y--------APMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp S--------TSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------ccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 2 2222222222578999999999888888877777776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00028 Score=58.30 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~--~~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
+|.....+||+++-+|+.+|+.+.+.|+||.++..-.-+ ++-++.-|++||=+++.+++++|+.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 467778999999999999999999999999999876543 46789999999999999999999877754
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00086 Score=74.20 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=117.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcH
Q 017926 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (363)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~ 260 (363)
.+|.|++..-|..|..+|+.++...++.-...+. ..++..+..|+++.+-||..|+.||+-+..+..+-.+.....--+
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 5678999999999999999999876554443222 567777778888889999999999999999999888888877888
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHH-HHHHhccCCChhHHHHHHHHHHhhccccc
Q 017926 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK-SVVDLTASADLDLQEKVFLEHVFCGLVFC 339 (363)
Q Consensus 261 ~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~-~Lv~lL~~~d~~lqE~al~aL~~~~~~~~ 339 (363)
+.|+..+.+.. +++++..|+..+-++... ...+...-.. .+++. .+..++.++.+.+||.++.|+. .++.
T Consensus 434 ~aL~~~ld~~~-~~rV~ahAa~al~nf~E~----~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIa---svA~ 504 (1075)
T KOG2171|consen 434 PALIALLDSTQ-NVRVQAHAAAALVNFSEE----CDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIA---SVAD 504 (1075)
T ss_pred HHHHHHhcccC-chHHHHHHHHHHHHHHHh----CcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHH---HHHH
Confidence 89999998874 679999999999988752 2323222222 23334 3444566789999999999999 6666
Q ss_pred Cchhhh
Q 017926 340 TCPCIV 345 (363)
Q Consensus 340 ~~~~~~ 345 (363)
.+.+.|
T Consensus 505 AA~~~F 510 (1075)
T KOG2171|consen 505 AAQEKF 510 (1075)
T ss_pred HHhhhh
Confidence 666533
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.002 Score=70.87 Aligned_cols=196 Identities=16% Similarity=0.124 Sum_probs=154.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN 205 (363)
..+++.+..-+++|-. .--|..||.-|..+++---.|-++. ..|-+|.+++||+++-.++|--=..+=+.+..-.
T Consensus 468 r~PPeQLPiVLQVLLS----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD 543 (1387)
T KOG1517|consen 468 RTPPEQLPIVLQVLLS----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD 543 (1387)
T ss_pred CCChHhcchHHHHHHH----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC
Confidence 3456666666666643 2457889888888877777788777 4689999999999999999988888888888878
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 206 PLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 206 p~~Q~~~le~G~lp~Ll~LL~s~---~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
|.||..+++.++-...++.|..+ +++-|.-|.+-|+.+++|++-+|+...+.+-+.+-.+.|.++. ..-+|.=.+-
T Consensus 544 ~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~i 622 (1387)
T KOG1517|consen 544 PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCI 622 (1387)
T ss_pred chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHH
Confidence 99999999999888888888873 2466889999999999999999999999888888888888752 4556666666
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.|.-|=. ..+..+=.=.+.+....|..+|+.+-+++|..|.-||+
T Consensus 623 cLG~LW~-----d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 623 CLGRLWE-----DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred HHHHHhh-----hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 6666543 12222222245678889999999889999999999988
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0002 Score=60.70 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN 205 (363)
.++.+++|..++.|..+. ++.....|+.+|.++|....+.+.+. ++|+=..+..+++++|++||..|..++..+..+|
T Consensus 39 ~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 39 ENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp SGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 368999999999996543 66677889999999999999888887 5677778889999999999999999999887654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00057 Score=53.25 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=67.2
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCC
Q 017926 218 LSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (363)
Q Consensus 218 lp~Ll~LL-~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~ 296 (363)
||.|++.| ++++..+|..|+++|+.+ + ....++.|..+++++ +..+|..|++.|..+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--~---------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL--G---------DPEAIPALIELLKDE--DPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC--T---------HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc--C---------CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC-------
Confidence 68999999 777789999999999933 1 113488999999775 67899999999987642
Q ss_pred CCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHH
Q 017926 297 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
...++.|.+++.++ +..+++.+..+|.
T Consensus 61 ---------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34789999999886 5566899988864
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=69.64 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=113.7
Q ss_pred CHHHHHHHHH---HHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 146 SLEDSQRALQ---ELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 146 s~e~k~~AL~---~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
+.+....|+. .++..|..+++. +....+..|++++|..++..|+..+..+|++++-.-...|..|+.+|+|..|.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 4444545544 445556666665 88889999999999999999999999999999987777899999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCcc-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~~-a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+++.+.+..++.+++|+|-.+.=+... -+.++..-=+-..|..+..++ +..++..+..++++|+-
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence 999999999999999999998876543 334555555667777777776 67899999999999974
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0047 Score=65.19 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCc-hh---hHHhcCCHHHHHHhcCC-------CCHHHHHHHHHH
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-AN---DLSKLGGLSVLVGQLNH-------PDTDIRKISAWI 197 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDn-An---~l~~lGgl~~Li~lL~s-------~~~~Ir~~Aa~~ 197 (363)
..+.+++++..|+... .+.|..+|--+..++.+.|. +. .+.+.=|..-+-++|++ +....+..|..+
T Consensus 3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 3566888999998765 57899999999999987763 21 24444457888899987 457889999999
Q ss_pred HHHHhccChHHH--HHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccH
Q 017926 198 LGKASQNNPLVQ--KQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 274 (363)
Q Consensus 198 Lgt~aqNNp~~Q--~~~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~ 274 (363)
|++.+. -|+.. ..++ +-||.|++.+.+.+. ++...++..|.+++ .++.+.+.|++.|+++.|.+++.+. .
T Consensus 81 L~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---~ 153 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---S 153 (543)
T ss_pred HHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---c
Confidence 999998 44443 2232 569999999988776 78889999999999 7899999999999999999999874 2
Q ss_pred HHHHHHHHHHHHHhhh
Q 017926 275 RLHRKAVSLVGDLAKC 290 (363)
Q Consensus 275 klr~kA~~lL~~L~~~ 290 (363)
..+..|..++.+++..
T Consensus 154 ~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSR 169 (543)
T ss_pred chHHHHHHHHHHHHHh
Confidence 4577899999998863
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=74.61 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=117.9
Q ss_pred CCCHHHHHHHHHHHHHcccCCCchhhHHhc-CCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc---cChHHHHHHHHc
Q 017926 144 TLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNH----PDTDIRKISAWILGKASQ---NNPLVQKQVLEL 215 (363)
Q Consensus 144 ~~s~e~k~~AL~~L~~Lve~iDnAn~l~~l-Ggl~~Li~lL~s----~~~~Ir~~Aa~~Lgt~aq---NNp~~Q~~~le~ 215 (363)
+.++...+.||.+|.-. .-.|-..|+.. |.+..|+.+|.. ..-.|-+.|-.||.++.+ +++..++...++
T Consensus 452 EsTLKavLSALWNLSAH--cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~ 529 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAH--CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH 529 (2195)
T ss_pred cchHHHHHHHHhhhhhc--ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh
Confidence 35778888999999864 34567788876 678888999964 345677778788776655 688888889999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
++|..|++.|++.+-.+..+++.+|-||..-++.-|+.+.+.|.+.+|..++++++.. +.+-++..|.||+.+
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkM--Ia~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKM--IAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhh--hhhhHHHHHHHHhcC
Confidence 9999999999999888888999999999888899999999999999999999998543 567788888898853
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0004 Score=46.38 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=35.6
Q ss_pred CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 017926 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (363)
Q Consensus 165 DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq 203 (363)
+++..+...||+++|+++|++++++++..|+|+|++++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467888999999999999999999999999999999863
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0092 Score=61.12 Aligned_cols=154 Identities=13% Similarity=0.015 Sum_probs=113.9
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL-----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-----G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
...++.+|+ ..++++..+....+..+.+.+|.....|.+. ....+++.+|..++..+..+|.+.|+.++...+.
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 345566774 4688999999999999999999988888876 4677888899988888899999999999875443
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHH
Q 017926 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKV 327 (363)
Q Consensus 250 a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~a 327 (363)
........--++.|...+++.. +...+.-++..+..|+. .+..+..|.+.++++.|+++|+.. +.+++=++
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~------~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLR------VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhC------CchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 2211111112345666666542 23456667788888874 567788888888999999999863 56888999
Q ss_pred HHHHHhhcc
Q 017926 328 FLEHVFCGL 336 (363)
Q Consensus 328 l~aL~~~~~ 336 (363)
+-|+|+++-
T Consensus 208 ll~lWlLSF 216 (429)
T cd00256 208 IFCIWLLTF 216 (429)
T ss_pred HHHHHHHhc
Confidence 999995443
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.015 Score=58.60 Aligned_cols=180 Identities=16% Similarity=0.101 Sum_probs=126.7
Q ss_pred CCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 143 STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 143 ~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
......+|+.||.-+..+++-.+..+. ...|.+..++.+.++++..+|..|..+|+.++--||+ .+.+.||+..|+
T Consensus 78 ~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~ 153 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLL 153 (371)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHH
Confidence 334567899999998888876554444 4778899999999999999999999999999999985 466889999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC-----CccH--HHHHHHHHHHHHHhhhhhhcC
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----SFEI--RLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~-----~~~~--klr~kA~~lL~~L~~~~~~~~ 295 (363)
+.+.+++.+.....+.++-.++ ++|..++-+...--++.+..-+.+. +.+. ..-..+..++..+...
T Consensus 154 ~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs----- 227 (371)
T PF14664_consen 154 RALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS----- 227 (371)
T ss_pred HHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-----
Confidence 9998866666777778887777 3454443333333456555554433 1121 2334566666666642
Q ss_pred CCCcchhHHhC-CcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 296 HKVEPPLFRDR-FFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 296 ~~~~~~~l~~~-g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
=+...-.-.+. ..++.|++.|..+++++++..+..+.
T Consensus 228 W~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 228 WPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred CCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12211111122 57899999999999999999988765
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.036 Score=60.66 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcc-cCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 147 LEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lv-e~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
...|..++..+-.+. ...|.. -+++-++.++.+++.++|...--.+.+.+..+|+..-. +++.|.+=+
T Consensus 46 ~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl 114 (746)
T PTZ00429 46 SYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDT 114 (746)
T ss_pred HHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHc
Confidence 455555655444432 333322 25677788888888889888888888888877764322 466777777
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
.++++.+|.-|+..+|++- . +...+ -.+..+.+++.++ +..||++|+..+..|.. .+++ .+.+
T Consensus 115 ~d~Np~IRaLALRtLs~Ir-~-~~i~e-----~l~~~lkk~L~D~--~pYVRKtAalai~Kly~-----~~pe---lv~~ 177 (746)
T PTZ00429 115 TNSSPVVRALAVRTMMCIR-V-SSVLE-----YTLEPLRRAVADP--DPYVRKTAAMGLGKLFH-----DDMQ---LFYQ 177 (746)
T ss_pred CCCCHHHHHHHHHHHHcCC-c-HHHHH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHh-----hCcc---cccc
Confidence 7778888888888888873 2 22222 2345577777765 57788888888888864 2332 3446
Q ss_pred CCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 306 RFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.|+++.|.++|...|+.++-.|+.+|.
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~ 204 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVC 204 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHH
Confidence 688888888888888888888888876
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0021 Score=65.04 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=113.3
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC----CH---HHHHHHHHHHHHHhc
Q 017926 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FV---EEAVKALYTVSSLIR 245 (363)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~----~~---~v~~kAL~ALSsLiR 245 (363)
.|.+++|.+..+|++.++-.+.+++||++|..|.+.+..|.+.||-..++++|+.. ++ +.-.-+..-|++.+-
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 46788888889999999999999999999999999999999999988888877642 21 233455667888888
Q ss_pred CCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHH
Q 017926 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQ 324 (363)
Q Consensus 246 ~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lq 324 (363)
++..-+.+..+.|.++.|...+.-+-.+..+..+-..-..+|++- ..+-..+.+.+..++..++.+|.+. .++..
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~----~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~ 241 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF----VCEMLYPFCKDCSLVFMLLQLLPSMVREDID 241 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH----HHHhhhhhhccchHHHHHHHHHHHhhccchh
Confidence 888889999999999999888764433333444444333344321 0122345566777888888888764 77777
Q ss_pred HHHHHHHH
Q 017926 325 EKVFLEHV 332 (363)
Q Consensus 325 E~al~aL~ 332 (363)
|.....+.
T Consensus 242 eM~feila 249 (604)
T KOG4500|consen 242 EMIFEILA 249 (604)
T ss_pred hHHHHHHH
Confidence 76655544
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=44.22 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=34.9
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 017926 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (363)
Q Consensus 206 p~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi 244 (363)
+.....+++.|++|.|++++++++..++..++++|++|+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346777889999999999999888999999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0029 Score=71.64 Aligned_cols=178 Identities=14% Similarity=0.074 Sum_probs=120.3
Q ss_pred CCchhhHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHH-HcCcHHHHHHhhcCC-CHHHHHHHHHHH
Q 017926 164 IDNANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSS-FVEEAVKALYTV 240 (363)
Q Consensus 164 iDnAn~l~~l-Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~l-e~G~lp~Ll~LL~s~-~~~v~~kAL~AL 240 (363)
+.|-..|+.. |-++.||..|.+...++..-.|.+|.++.=+-+..-+.++ +.|-+-.|....-.. ....-...|.||
T Consensus 383 v~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSAL 462 (2195)
T KOG2122|consen 383 VANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSAL 462 (2195)
T ss_pred ccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHH
Confidence 3444455554 3455667777777777777777777777655444444444 447666666554332 222223345555
Q ss_pred HHHhcCCcccHHHHHhc-CcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc
Q 017926 241 SSLIRNNLAGQEMFYVE-AGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (363)
Q Consensus 241 SsLiR~~~~a~~~f~~~-gG~~~L~~lL~s~--~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (363)
=||..|+-.+...|+.. |.+..|+..|.-+ ....++...+-..|.|...... ..+.-++.+.+++++..|+.+|+
T Consensus 463 WNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA--t~E~yRQILR~~NCLq~LLQ~LK 540 (2195)
T KOG2122|consen 463 WNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA--TCEDYRQILRRHNCLQTLLQHLK 540 (2195)
T ss_pred hhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh--ccchHHHHHHHhhHHHHHHHHhh
Confidence 55556777788899987 5589999999754 3345677777778877765442 45667888999999999999999
Q ss_pred CCChhHHHHHHHHHHhhcccccCchh
Q 017926 318 SADLDLQEKVFLEHVFCGLVFCTCPC 343 (363)
Q Consensus 318 ~~d~~lqE~al~aL~~~~~~~~~~~~ 343 (363)
+....+.-.++++||.+..-.+.+.+
T Consensus 541 S~SLTiVSNaCGTLWNLSAR~p~DQq 566 (2195)
T KOG2122|consen 541 SHSLTIVSNACGTLWNLSARSPEDQQ 566 (2195)
T ss_pred hcceEEeecchhhhhhhhcCCHHHHH
Confidence 99999999999999955554444433
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.013 Score=65.24 Aligned_cols=194 Identities=16% Similarity=0.091 Sum_probs=129.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhc------CCHHHHHHhcCCC--C--------------HHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL------GGLSVLVGQLNHP--D--------------TDI 190 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~l------Ggl~~Li~lL~s~--~--------------~~I 190 (363)
++-.+++..|.+.+...|..||+-|--+++. |-...+. -.++.++.++... + ..-
T Consensus 249 i~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~ 325 (1075)
T KOG2171|consen 249 IQFSLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETP 325 (1075)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCc
Confidence 3445566677778888999999999998887 4433331 2344555554321 1 124
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~ 270 (363)
...|..+|-.++-.=+..|-. .-.++.+-.++.+++-..|..++-|||.+..|+......-+ -..++++...|+++
T Consensus 326 ~~~A~~~lDrlA~~L~g~~v~---p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 326 YRAAEQALDRLALHLGGKQVL---PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP 401 (1075)
T ss_pred HHHHHHHHHHHHhcCChhheh---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC
Confidence 455666666666542221111 12345566778888888899999999999998776544311 24678888889987
Q ss_pred CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHHhhcccccCchh
Q 017926 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHVFCGLVFCTCPC 343 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~~~~~~~~~~~~ 343 (363)
+++||--|++++..+.+. -.++. +.-..+-+++.|+..+.+. ++.++-+|+.|+. .....|+.
T Consensus 402 --hprVr~AA~naigQ~std----l~p~i-qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~---nf~E~~~~ 465 (1075)
T KOG2171|consen 402 --HPRVRYAALNAIGQMSTD----LQPEI-QKKHHERLPPALIALLDSTQNVRVQAHAAAALV---NFSEECDK 465 (1075)
T ss_pred --CHHHHHHHHHHHHhhhhh----hcHHH-HHHHHHhccHHHHHHhcccCchHHHHHHHHHHH---HHHHhCcH
Confidence 688999999999999863 22332 2333456778888888876 8899999999988 44455553
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.057 Score=59.08 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=80.2
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHH
Q 017926 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTD 189 (363)
Q Consensus 112 ~r~~~Lkeal~~l-~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~ 189 (363)
+|++-+|+++..+ .|.+-..+....++.+... +.+.|.-..--+..+.+. .|.+ +=.+..+.+-++++++-
T Consensus 48 ~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pela-----lLaINtl~KDl~d~Np~ 120 (746)
T PTZ00429 48 RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKA-----LLAVNTFLQDTTNSSPV 120 (746)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHH-----HHHHHHHHHHcCCCCHH
Confidence 4566677776665 3445445555555544332 455555554444444332 1211 11233444555566666
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcC
Q 017926 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s 269 (363)
+|..|.+.++.+- .|..-+. .++.+.+.+.+.++-||.+|+.|+..+-+.+|. .+.+.|=++.|..+|.+
T Consensus 121 IRaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 121 VRALAVRTMMCIR--VSSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND 190 (746)
T ss_pred HHHHHHHHHHcCC--cHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC
Confidence 6666666666553 2322222 244455555555566666666666666655442 22223334455555554
Q ss_pred CCccHHHHHHHHHHHHHHh
Q 017926 270 SSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 270 ~~~~~klr~kA~~lL~~L~ 288 (363)
. +..+...|+.++..+.
T Consensus 191 ~--dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 191 N--NPVVASNAAAIVCEVN 207 (746)
T ss_pred C--CccHHHHHHHHHHHHH
Confidence 3 3345556666555554
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.022 Score=61.50 Aligned_cols=215 Identities=18% Similarity=0.158 Sum_probs=151.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcc
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN 204 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aqN 204 (363)
++.++.+.+..+-+.+.. =+|+|..|+..|--+.... +..+...|++|++.-|+. .++++-..+...+..+..+
T Consensus 18 ~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred ccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 456677777777777643 4678878877776654332 334556799999999965 5899999999999999876
Q ss_pred C--------h--------HHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-cHHHHHhc-CcHHHHHH
Q 017926 205 N--------P--------LVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQD 265 (363)
Q Consensus 205 N--------p--------~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~-a~~~f~~~-gG~~~L~~ 265 (363)
. + ...+.|++. +.|..|+..+...+-.||..++.-|++++++-|. .++.++.. -|+..|+.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 4 2 234556654 7899999999998888999999999999998554 45566654 79999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC---Ch-hHHHHHHHHHHhhcccccCc
Q 017926 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---DL-DLQEKVFLEHVFCGLVFCTC 341 (363)
Q Consensus 266 lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d~-~lqE~al~aL~~~~~~~~~~ 341 (363)
+|.+. -..+|..+..+|..|+. .++.....+.=++....|.+++... |- -+.|-++..|..+=-...+.
T Consensus 174 lL~Ds--rE~IRNe~iLlL~eL~k-----~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 174 LLRDS--REPIRNEAILLLSELVK-----DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred HHhhh--hhhhchhHHHHHHHHHc-----cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence 99986 34589999999999985 4555444444467777888887642 22 34454544444211234456
Q ss_pred hhhhhHHHHHH
Q 017926 342 PCIVRGAVIVA 352 (363)
Q Consensus 342 ~~~~r~~~l~~ 352 (363)
...||++.-+.
T Consensus 247 Q~~FrE~~~i~ 257 (970)
T KOG0946|consen 247 QNFFREGSYIP 257 (970)
T ss_pred hhHHhccccHH
Confidence 66777654433
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=66.71 Aligned_cols=136 Identities=11% Similarity=0.048 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCC
Q 017926 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (363)
Q Consensus 192 ~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~ 271 (363)
..++.+|-++...--..+--..++....+|+++|++++..+.--+..++++.+-.+.+-+.-|++.|-++.|+..+.++
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK- 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK- 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence 3444555566655555566666778899999999998777777899999999999999999999999999999999976
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 272 ~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
|..+|.++.|.++++... .++...-.+.....+..+++....++-.+|++.++.+..
T Consensus 486 -DdaLqans~wvlrHlmyn----cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrN 542 (743)
T COG5369 486 -DDALQANSEWVLRHLMYN----CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRN 542 (743)
T ss_pred -hhhhhhcchhhhhhhhhc----CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHh
Confidence 667999999999999862 333333334445556889999999999999999999983
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.007 Score=66.79 Aligned_cols=159 Identities=13% Similarity=0.139 Sum_probs=117.4
Q ss_pred HHHHHHHHH-----HHhhc-CCCCHHHHHHHHHHHHHcccCCCchh-hHHhcCCHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 017926 129 DAQLIQIAI-----DDLNN-STLSLEDSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNHP-DTDIRKISAWILGK 200 (363)
Q Consensus 129 d~~lmk~al-----~~L~~-~~~s~e~k~~AL~~L~~Lve~iDnAn-~l~~lGgl~~Li~lL~s~-~~~Ir~~Aa~~Lgt 200 (363)
-++++|+.. .+|.. ...+.|.|.-|.-.|..+|++--.+. .....+.+.+.+..|+++ .+-+|...|-|||.
T Consensus 547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~ 626 (1387)
T KOG1517|consen 547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR 626 (1387)
T ss_pred HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 457777732 33444 34567889888889999999976555 344455667778889885 79999999999999
Q ss_pred HhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC----CcccHHHH------------Hhc---CcHH
Q 017926 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN----NLAGQEMF------------YVE---AGDL 261 (363)
Q Consensus 201 ~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~----~~~a~~~f------------~~~---gG~~ 261 (363)
+=+|+++.|=.-.+.++..+|+.+|+++.++||..|++||+.++++ ++...... ++. .|.-
T Consensus 627 LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~ 706 (1387)
T KOG1517|consen 627 LWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLM 706 (1387)
T ss_pred HhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHH
Confidence 9999999998888999999999999999999999999999999997 44433222 111 1223
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 262 MLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 262 ~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.++.+++.. .+-+|...+-.++.+..
T Consensus 707 ~ll~~vsdg--splvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 707 SLLALVSDG--SPLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHHHHHhcc--chHHHHHHHHHHHHHHH
Confidence 455555554 34577777777777664
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.024 Score=62.82 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHccc-CCCchhhHHh----cCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHH
Q 017926 147 LEDSQRALQELLILVE-PIDNANDLSK----LGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSK 220 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve-~iDnAn~l~~----lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~ 220 (363)
.+..+-+|..|..++. +.|.|.-|.. +|.++.++.+|. +.++.|+..|..+|..++.|- .|-+.+...|.+..
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHH
Confidence 3445567888888776 4688777654 788999988885 578999999999999888754 58888899999999
Q ss_pred HHHhhcCCCH--HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhh
Q 017926 221 LMKMVKSSFV--EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (363)
Q Consensus 221 Ll~LL~s~~~--~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~ 291 (363)
|+.||.+... +.....+|||++ ++....+-.++||+..|..++-..+ ....|..|+.++.-|....
T Consensus 1818 LL~lLHS~PS~R~~vL~vLYAL~S----~~~i~keA~~hg~l~yil~~~c~~~-~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1818 LLTLLHSQPSMRARVLDVLYALSS----NGQIGKEALEHGGLMYILSILCLTN-SDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHHhcChHHHHHHHHHHHHHhc----CcHHHHHHHhcCchhhhhHHHhccC-cHHHHHHHHHHHHHhhhcc
Confidence 9999998543 234467888876 3556677788999988888776553 4568899999999998654
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0097 Score=51.89 Aligned_cols=128 Identities=10% Similarity=0.055 Sum_probs=95.7
Q ss_pred CCHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHH
Q 017926 174 GGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 174 Ggl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~ 252 (363)
+=+..|+.-. +..+.+-+.+..-=|++.+- .|..-..+.+.+++...+..|...+..+..-++.+|+++|-+ +.+.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHH
Confidence 3345555444 45788888887777777774 688888899999999999999999988999999999999975 55666
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHH
Q 017926 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (363)
Q Consensus 253 ~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~ 310 (363)
-+.+++|++.++.+++++ +...-..++.++..|+. .+...++.+....++.
T Consensus 94 ~I~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~-----~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSP--PEITVHSAALFLQLLEF-----GERTERDELLSPAVVR 144 (173)
T ss_pred HHHHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcC-----cccchhHHhccHHHHH
Confidence 677889999999999997 34455566666777764 3445566555544433
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0033 Score=51.98 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhH
Q 017926 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (363)
Q Consensus 232 v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l 303 (363)
+|...+..|++++-.++..|+.+.+.||+++++.+..-+..++.+|..|.|.|.+|+. .+++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e-----~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCE-----GNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHh-----CCHHHHHHH
Confidence 3566788999999999999999999999999999977666688999999999999996 354444443
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.021 Score=50.83 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=96.3
Q ss_pred chhhHHhcCCHHHHHHhcCCCC------HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHH
Q 017926 166 NANDLSKLGGLSVLVGQLNHPD------TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKAL 237 (363)
Q Consensus 166 nAn~l~~lGgl~~Li~lL~s~~------~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~--~~v~~kAL 237 (363)
.|..|++.||+..|+++++++. .++...+..+.-.+..-.--+. ..++...+.+++.++.... ..+...|+
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHH
Confidence 5889999999999999997654 4677777777777776433233 3455667888888888654 56788899
Q ss_pred HHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 238 ~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.-|-+++-+.+.....+-+.=-++-|+..|+.. +..++.+|..++..|..
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence 999999998877777777777789999999985 67799999999999986
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.016 Score=59.07 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=107.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
..+.-++..|...+ +.+.+..+.-.+.. .+.+. ++..|+..|.+.++++|..++..||.+-
T Consensus 54 ~a~~~L~~aL~~d~-~~ev~~~aa~al~~----~~~~~------~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 54 AATELLVSALAEAD-EPGRVACAALALLA----QEDAL------DLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred hHHHHHHHHHhhCC-ChhHHHHHHHHHhc----cCChH------HHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 34555666664322 33444444443332 12111 3889999999999999999999999542
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
..+..+.|+.+|+++++.++..++.+++. |+ ..-.+.+..+|++. +..++..|+..+..|-.
T Consensus 115 ---~~~a~~~L~~~L~~~~p~vR~aal~al~~--r~----------~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~- 176 (410)
T TIGR02270 115 ---GRQAEPWLEPLLAASEPPGRAIGLAALGA--HR----------HDPGPALEAALTHE--DALVRAAALRALGELPR- 176 (410)
T ss_pred ---chHHHHHHHHHhcCCChHHHHHHHHHHHh--hc----------cChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc-
Confidence 23567889999999888888888866665 11 12234788888865 67799999999988853
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhc
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCG 335 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~ 335 (363)
...++.|...+.+.|+.++..|+.++...+
T Consensus 177 ---------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ---------------RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ---------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 356677788888889999999999987443
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.037 Score=48.39 Aligned_cols=119 Identities=14% Similarity=0.041 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
.+.|.|+...-+|..+.-+.-|-.-+..+..+..++..|..++..+.+.+...|+++|- .+...+.+++.+++|.++..
T Consensus 29 t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~ 107 (173)
T KOG4646|consen 29 TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFV 107 (173)
T ss_pred ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEee
Confidence 36688888999999999998888999999999999999999999999999999999996 57788889999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 264 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~ 264 (363)
++++...+...|+.++--+.-+...-.+.+..-..+..+.
T Consensus 108 lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 108 LSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ 147 (173)
T ss_pred cCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence 9998766555566666555443333333343333333333
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0048 Score=52.37 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=63.1
Q ss_pred CHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 175 GLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 175 gl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
.+..|+.+| .+.++....-||.=||..++..|..+..+-+.|+=..++.|+.+++++|+..||.|+.-++.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 466778888 566889999999999999999999999888889999999999999999999999999988765
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.023 Score=58.33 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=111.6
Q ss_pred cCCHHHHHHhcCCCC--HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcc
Q 017926 173 LGGLSVLVGQLNHPD--TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 173 lGgl~~Li~lL~s~~--~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~-~~~v~~kAL~ALSsLiR~~~~ 249 (363)
-||+..|+.++.+++ ..+|..|+.+|-.+.. .+..+.+...| +..++.+.+.. ..+.++..+.-|.++-+|...
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 489999999998875 4569999999987764 23566777666 67777777654 356788899999999999888
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHH
Q 017926 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFL 329 (363)
Q Consensus 250 a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~ 329 (363)
-...++..||++.++.-.+.. ++.+-+.++.++.+.+.+ ...+....+++.....-|.-+-.+.|.-++-+|..
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~----~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALH----GGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred HHHHHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhh----chhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 888999999999888777664 566788888888888764 34455556666555555555545556667777766
Q ss_pred HHH
Q 017926 330 EHV 332 (363)
Q Consensus 330 aL~ 332 (363)
|+.
T Consensus 330 AV~ 332 (832)
T KOG3678|consen 330 AVA 332 (832)
T ss_pred HHh
Confidence 654
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.087 Score=53.39 Aligned_cols=187 Identities=18% Similarity=0.108 Sum_probs=126.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHh-------cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-------LGGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~-------lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq 203 (363)
+..+--+..+.... .++...-+|--+.++...-....++.+ ---|.+.+++|...+.-+...++|+|+.+++
T Consensus 65 ~~v~~fi~LlS~~~-kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHID-KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhh-hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 44444444444332 334444455545554443333332222 2358999999999999999999999999998
Q ss_pred cChHH---HHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHH
Q 017926 204 NNPLV---QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279 (363)
Q Consensus 204 NNp~~---Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~k 279 (363)
+-+.. .+.-+..|. |-.++++ .+.....-|+.+|..++|. ++.+..|..++|+..++..+.+...+..+|=.
T Consensus 144 ~g~~~~~~~e~~~~~~~---l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYq 219 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGF---LKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQ 219 (442)
T ss_pred hccccccchHHHHHHHH---HHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHH
Confidence 53321 111122233 3334444 4455677889999999996 66789999999999999999655567889999
Q ss_pred HHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHH
Q 017926 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEH 331 (363)
Q Consensus 280 A~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL 331 (363)
..|++--|+. ++...+.+..-+.++.|.++++. ..+||+.+.+
T Consensus 220 sifciWlLtF------n~~~ae~~~~~~li~~L~~Ivk~---~~KEKV~Riv 262 (442)
T KOG2759|consen 220 SIFCIWLLTF------NPHAAEKLKRFDLIQDLSDIVKE---STKEKVTRIV 262 (442)
T ss_pred HHHHHHHhhc------CHHHHHHHhhccHHHHHHHHHHH---HHHHHHHHHH
Confidence 9999888875 56667778888999999999986 4666665553
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.048 Score=56.08 Aligned_cols=154 Identities=13% Similarity=0.124 Sum_probs=115.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
....+..+..+......+..+-.-||++.-. .|-..+...| +..++.+-+ ...+++....+.+|+++-...++.-..
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3445666666665446688887777775432 3444555555 555555553 567899999999999999876666667
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~-~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
+++.|++..++--.+-.++.+-+.+..||+++.-+ ....+...++-...+.|..+-.+. |.-+|..|+.++.-|++.
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLHACLAVAVLATN 337 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHHHHHHHhhhhhh
Confidence 88999999998888887888888888899986554 566778888888888888887765 667899999999988863
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.04 Score=59.03 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=28.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChH
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~ 207 (363)
.+|-|.+=|..+++.|+..|..+||.+|.-||+
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 467778888899999999999999999988873
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.1 Score=56.83 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=103.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~ 255 (363)
++-+++...+.|.++|...=--+-..++.+| +..++ +++.+.+=++++++.+|.-|+..+|.+ |. ..+.
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l-~~-----~el~ 125 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQDPNEEIRGFALRTLSLL-RV-----KELL 125 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhc-Ch-----HHHH
Confidence 6667777778889999888888888888888 33333 467788888888888899999998887 32 1122
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 256 ~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
-.-++.+.+++.++ +..+|+.|+.++..+-. -+ ...+.+.|.+..+..++...|+.+.-.|+.+|.
T Consensus 126 -~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~-----ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~ 191 (757)
T COG5096 126 -GNIIDPIKKLLTDP--HAYVRKTAALAVAKLYR-----LD---KDLYHELGLIDILKELVADSDPIVIANALASLA 191 (757)
T ss_pred -HHHHHHHHHHccCC--cHHHHHHHHHHHHHHHh-----cC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHH
Confidence 13467888888887 56789999999988874 12 345667888888899988889999998888887
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.033 Score=57.39 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=96.7
Q ss_pred CCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHH
Q 017926 163 PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVS 241 (363)
Q Consensus 163 ~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALS 241 (363)
-.+|-+.+..+|-++.|+++....+++++......+-++.-+ ...+..++..|.+|.|..+|.++.. .++.+.+|-+|
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S 412 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS 412 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence 458899999999999999999999999999999999988864 3467788999999999999999764 67889999998
Q ss_pred HHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 242 SLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 242 sLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
+ +......|.-...++.+...+-+. ++.++-.....+.-+||.+
T Consensus 413 ~----dD~~K~MfayTdci~~lmk~v~~~-~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 413 C----DDDAKAMFAYTDCIKLLMKDVLSG-TGSEVDLALIALCINLCLN 456 (791)
T ss_pred c----CcHHHHHHHHHHHHHHHHHHHHhc-CCceecHHHHHHHHHHHhc
Confidence 7 355667777778888887766544 2444555555555677653
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0091 Score=42.87 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 017926 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L 287 (363)
.+|..|+++|+.+..+.+..... +....++.|..+|+++ +..+|..|++.|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 57899999999988877665544 4457889999999886 447999999999865
|
... |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.089 Score=46.93 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=93.1
Q ss_pred HHHHHHcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 209 QKQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 209 Q~~~le~G~lp~Ll~LL~s~~~------~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
...|++.||++.|++++.++.. +.-..+|.|...+..|.--..+ .....=+..++........+..+...+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4568899999999999998763 3445677777777766443332 33333345666666665556778899999
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcccccCchhhhhH
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGLVFCTCPCIVRG 347 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~~~~~~~~~~r~ 347 (363)
.+.+++. ..+.....+.++=-++.|+.+|+.++.++|-.++.-+. ++...+++.-|.
T Consensus 83 ILEs~Vl-----~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLin---AL~~kA~~~~r~ 139 (160)
T PF11841_consen 83 ILESIVL-----NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALIN---ALFLKADDSKRK 139 (160)
T ss_pred HHHHHHh-----CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHH---HHHhcCChHHHH
Confidence 9999995 34455667777778899999999999999998877666 444555665553
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.47 Score=46.66 Aligned_cols=190 Identities=16% Similarity=0.104 Sum_probs=111.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc---ChH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQN---NPL 207 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~--lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN---Np~ 207 (363)
++++|..+.+. ....|+.+|..+..++...=....+.+ .-.+..+.+.++....+=+..|+.+++-++=. .+.
T Consensus 45 L~~~Id~l~eK--~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEK--SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 55666666544 357788888888887654432322222 23466777888777667778898988887532 233
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCH--HHHHHHHHHHHHHhc--C-CcccHHHHHhcCcHH--HHHHhhcCCC--------c
Q 017926 208 VQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSSLIR--N-NLAGQEMFYVEAGDL--MLQDILGNSS--------F 272 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s~~~--~v~~kAL~ALSsLiR--~-~~~a~~~f~~~gG~~--~L~~lL~s~~--------~ 272 (363)
.. .+++ ...|.|.+++...+. ..|..+++||+-++- . .+....... ..++ ....+.+++. .
T Consensus 123 ~~-ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 123 SE-EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred HH-HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCC
Confidence 33 3343 478899999887653 456677777775432 2 222121111 1222 1112222221 1
Q ss_pred cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 273 ~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
+..+...|+..-+-|++. .+........ ...++.|+++|.++|.++|..|-.+|.+
T Consensus 199 ~~~l~~aAL~aW~lLlt~----~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAl 254 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTT----LPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIAL 254 (309)
T ss_pred ccHHHHHHHHHHHHHHhc----CCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 234666666655555542 2221122222 3468999999999999999999999884
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.22 Score=50.50 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhccCh
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP 206 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aqNNp 206 (363)
+-++-+.-++.+-+.+.+.+-...+..-|..++.-....-.|....|...++..|.+ .+-.++-+.+.|+=-++- ||
T Consensus 153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~ 231 (442)
T KOG2759|consen 153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NP 231 (442)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CH
Confidence 455555555555444445566677777788888878888899999999999998833 456677777777777776 45
Q ss_pred HHHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcc------------------------------------
Q 017926 207 LVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLA------------------------------------ 249 (363)
Q Consensus 207 ~~Q~~~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALSsLiR~~~~------------------------------------ 249 (363)
...+.+...+.|+.|.+++++... .|-+-.+..+-+++-..+.
T Consensus 232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~d 311 (442)
T KOG2759|consen 232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDD 311 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHH
Confidence 555667777999999999987542 3433444444455443321
Q ss_pred --------------------------------------------cHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHHH
Q 017926 250 --------------------------------------------GQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVSL 283 (363)
Q Consensus 250 --------------------------------------------a~~~f~~~--gG~~~L~~lL~s~~~~~klr~kA~~l 283 (363)
+.+.|.+- .-+..|+.+|+.++ |+.+---|++=
T Consensus 312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~-Dp~iL~VAc~D 390 (442)
T KOG2759|consen 312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN-DPIILCVACHD 390 (442)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC-CCceeehhhhh
Confidence 33344432 24556666666553 23333445555
Q ss_pred HHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 284 L~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
|...+. ..|..+..+.+.|+=..+++++.++|++++=+|+.|+-
T Consensus 391 Ige~Vr-----~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 391 IGEYVR-----HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred HHHHHH-----hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 555554 46777888889999999999999999999999999876
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.12 Score=54.71 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=113.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHH---HHHHHcCcHHHHHHhhcCC-------CHHHHHHHHHHHHHHhc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ---KQVLELGALSKLMKMVKSS-------FVEEAVKALYTVSSLIR 245 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q---~~~le~G~lp~Ll~LL~s~-------~~~v~~kAL~ALSsLiR 245 (363)
+.-.+.+|++.+.+=|..+.-.+.+++.+++..+ +.+.+.=+.+-|-+||.+. ....+.-|+.-|++.++
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 4556788888888889999999999999877433 4577876678888899873 23457778888899888
Q ss_pred CCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHH
Q 017926 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 325 (363)
Q Consensus 246 ~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE 325 (363)
. |.....-.-.+=++.|++++.+.. +..+...+..+|..++. .++-...+.+.|.++.|++.+.+ ....+|
T Consensus 87 ~-~~~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias------~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 87 D-PELASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIAS------SPEGAKALLESGAVPALCEIIPN-QSFQME 157 (543)
T ss_pred C-hhhhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHc------CcHhHHHHHhcCCHHHHHHHHHh-CcchHH
Confidence 3 332222222367899999998763 33577889999999984 67888999999999999999988 666788
Q ss_pred HHHHHHHh
Q 017926 326 KVFLEHVF 333 (363)
Q Consensus 326 ~al~aL~~ 333 (363)
.++..+..
T Consensus 158 ~Al~lL~~ 165 (543)
T PF05536_consen 158 IALNLLLN 165 (543)
T ss_pred HHHHHHHH
Confidence 88888773
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.077 Score=52.53 Aligned_cols=142 Identities=11% Similarity=0.061 Sum_probs=104.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCh--HHHHH--HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP--LVQKQ--VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp--~~Q~~--~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~ 251 (363)
.|.|-.-|.+++..++..||.-||.+..|.+ .+.+. +++.|.+|.++..+..++.+|...|+-.|+.+.+ +|.+.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHH
Confidence 3445556788999999999999999999876 33333 4588999999999999999999999999999987 68888
Q ss_pred HHHHhcCcHHHH--HHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHH
Q 017926 252 EMFYVEAGDLML--QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQE 325 (363)
Q Consensus 252 ~~f~~~gG~~~L--~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE 325 (363)
..+...+-.+.+ +.+--.. +.-.|.+...+|--+.+ ..+.........|++..|..-|+.. |.-++-
T Consensus 163 eaiFeSellDdlhlrnlaakc--ndiaRvRVleLIieifS-----iSpesaneckkSGLldlLeaElkGteDtLVia 232 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKC--NDIARVRVLELIIEIFS-----ISPESANECKKSGLLDLLEAELKGTEDTLVIA 232 (524)
T ss_pred HHhcccccCChHHHhHHHhhh--hhHHHHHHHHHHHHHHh-----cCHHHHhHhhhhhHHHHHHHHhcCCcceeehh
Confidence 888876555433 3332222 33478888888888875 3556666677788888887777653 543333
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.013 Score=37.57 Aligned_cols=29 Identities=31% Similarity=0.573 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQN 204 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN 204 (363)
+|.+++++++++++||..|+++|+.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999863
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.068 Score=55.12 Aligned_cols=134 Identities=20% Similarity=0.254 Sum_probs=96.8
Q ss_pred HHHHHHHcccCCCchhhHHhcCCHHHHHHhc----------CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 153 ALQELLILVEPIDNANDLSKLGGLSVLVGQL----------NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 153 AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL----------~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
+|+.|..|-.+..++..+..-.|+..|+.+- ...+.++...|..||+++.=++|..|+.+.+.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3566777777888888888888888887654 346899999999999999999999999999999999999
Q ss_pred HhhcCC-----CHHH---HHHHHHHHHHHhcCCcccHH-HHHhcCcHHHHHHhhcC--------CC-------ccHHHHH
Q 017926 223 KMVKSS-----FVEE---AVKALYTVSSLIRNNLAGQE-MFYVEAGDLMLQDILGN--------SS-------FEIRLHR 278 (363)
Q Consensus 223 ~LL~s~-----~~~v---~~kAL~ALSsLiR~~~~a~~-~f~~~gG~~~L~~lL~s--------~~-------~~~klr~ 278 (363)
..|+.. +.++ ..+-++-+.++. +..+. .+.+++|+..|...|.. .. .+...-.
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~ 157 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS 157 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence 999876 3332 346666555542 23344 44456888888876521 10 1334456
Q ss_pred HHHHHHHHHhh
Q 017926 279 KAVSLVGDLAK 289 (363)
Q Consensus 279 kA~~lL~~L~~ 289 (363)
.++.++.++..
T Consensus 158 EiLKllFNit~ 168 (446)
T PF10165_consen 158 EILKLLFNITL 168 (446)
T ss_pred HHHHHHHHhhh
Confidence 66777777765
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.67 Score=47.41 Aligned_cols=89 Identities=20% Similarity=0.034 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
......+..|.+. ++..+..++..+.. ....-.++++.+|+++++.+|..|+.+||.+-.
T Consensus 117 ~a~~~L~~~L~~~--~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------- 176 (410)
T TIGR02270 117 QAEPWLEPLLAAS--EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR------- 176 (410)
T ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------
Confidence 3344444555332 44555566655544 222346788899999999999999999998754
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsL 243 (363)
..++|.|...+.+.++.||..|+.+++-+
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 35678888889998999999999888655
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.15 Score=45.78 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc--HHHHH
Q 017926 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQ 264 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG--~~~L~ 264 (363)
++.||..+..++|.++...|..-+ ..+|.+...|.++++.||..|+..|+.++.++. ++..| +..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHH
Confidence 578999999999999998775444 358999999999999999999999999987532 23323 36677
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 265 DILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 265 ~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.++.++ +..+|.-|..++..+..
T Consensus 70 ~~l~D~--~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 70 KLLVDE--NPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHcCC--CHHHHHHHHHHHHHHHH
Confidence 777766 67799999999999885
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.065 Score=55.89 Aligned_cols=155 Identities=12% Similarity=0.175 Sum_probs=117.9
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc-H
Q 017926 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-Q 251 (363)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a-~ 251 (363)
....++|+++|.+++..|...+...+++.+-.-...|..|++.|.|..|+.++.+.+..++.+.+|.+-.++-|+... +
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 445688999999988888888999999888766668999999999999999999988899999999999998887665 3
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh----CCcHHHHHHhccCCC-hhHHHH
Q 017926 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD----RFFLKSVVDLTASAD-LDLQEK 326 (363)
Q Consensus 252 ~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~----~g~v~~Lv~lL~~~d-~~lqE~ 326 (363)
-+|+...|++.++.+..++ .-+++.....++.+++-.. .-++...+.+.. .=+.+.+++.+...+ .++++.
T Consensus 510 f~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~--~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~ 585 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDT--SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEG 585 (743)
T ss_pred hhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhccccc--ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhh
Confidence 4788899999999999887 6789999999999997310 012223332222 125567777777664 455555
Q ss_pred HHHHH
Q 017926 327 VFLEH 331 (363)
Q Consensus 327 al~aL 331 (363)
.-.-+
T Consensus 586 ~yilv 590 (743)
T COG5369 586 CYILV 590 (743)
T ss_pred HHHHH
Confidence 43333
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.34 Score=49.35 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=79.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH-------------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-------------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~-------------Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSs 242 (363)
+..|+.+|.+ +++...||..++.+....+.+ ++++.. -.+|.|++-.++.+.+.+..-+.|||.
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 4456666665 788899999999999874433 333332 368999999998777788899999999
Q ss_pred HhcCCcccHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 243 LIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 243 LiR~~~~a~~~f~~--~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
++++-|... +.. ..-+++|++.|..+ +..++..++..+..+..
T Consensus 350 ll~~vP~~v--l~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 350 LLKNVPKSV--LLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILE 394 (415)
T ss_pred HHhhCCHHH--HHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 999877432 222 24578999999876 45688899999999885
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.079 Score=43.30 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=51.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi 244 (363)
-++|++.+++.++..||..||.+|.+++.. .+..++.+ ..++.|.+++.+.++.|+..| .-|-.++
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 489999999999999999999999999864 45555544 678888888888887776544 4444443
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.58 Score=41.62 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-HHHHHHHHcCcHHHHHHhhcC---------CCHHHHHHHHHHHHHHh
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS---------SFVEEAVKALYTVSSLI 244 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp-~~Q~~~le~G~lp~Ll~LL~s---------~~~~v~~kAL~ALSsLi 244 (363)
.-..++..|.+..... ....-|...-.++| .--+.|++.||+..|+.+|.. ........++.+|-+|+
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3445667676544332 22333333333443 335568899999999998863 12345678888888887
Q ss_pred cCCcccHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 245 RNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 245 R~~~~a~~~f~~-~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
. +..+...++. .+++..|..+|.++ +.++|.-++-+|+.+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~--~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSP--NIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TT--SHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 4 5677887777 57899999999987 6789999999999887
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.66 Score=50.72 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=104.3
Q ss_pred HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHH
Q 017926 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (363)
Q Consensus 112 ~r~~~Lkeal~~l~-~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~I 190 (363)
+|.+-+|..+..|. |.+-..+...-++-.. +.+.|-|.-.---++.+.+. +. +...+ .+..+..=|+++|+.|
T Consensus 35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~--trd~ElKrL~ylYl~~yak~-~P--~~~lL-avNti~kDl~d~N~~i 108 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA--TRDVELKRLLYLYLERYAKL-KP--ELALL-AVNTIQKDLQDPNEEI 108 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhcc-CH--HHHHH-HHHHHHhhccCCCHHH
Confidence 56777777777764 5553334344444333 33555554333333333222 11 22211 3556667788999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~ 270 (363)
|..|.+.++.+=- ++ +-...++++.+++.++.+.||.+|++||..+-|-. .+.+.+.|-...+..++.+.
T Consensus 109 R~~AlR~ls~l~~--~e-----l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 109 RGFALRTLSLLRV--KE-----LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHhcCh--HH-----HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCC
Confidence 9999999997732 21 22346899999999999999999999999996543 46677777788888888765
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 017926 271 SFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~~ 289 (363)
++.+...|...+..+..
T Consensus 179 --dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 179 --DPIVIANALASLAEIDP 195 (757)
T ss_pred --CchHHHHHHHHHHHhch
Confidence 55677788877776653
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.87 Score=45.98 Aligned_cols=156 Identities=15% Similarity=0.063 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
.+.+..++..+.+++.+.+.-..+.+.+.=..++..|.. .+..=|++|...+..+..-....+ .+-.|.+..++.+
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai 116 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence 688999999999999999999999999876677777753 456678899999998876421111 1355889999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
..+.++..+.-|+-.|+-++-.+| +.+...||+..|.+.+.++. ..+....+..+-++.. .|..+..+.
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~--~~~~~~l~~~lL~lLd------~p~tR~yl~ 185 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGS--FSISESLLDTLLYLLD------SPRTRKYLR 185 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhcc--HhHHHHHHHHHHHHhC------Ccchhhhhc
Confidence 999889999999999999888776 67889999999999998752 3366677777777774 556666555
Q ss_pred hCCcHHHHHHh
Q 017926 305 DRFFLKSVVDL 315 (363)
Q Consensus 305 ~~g~v~~Lv~l 315 (363)
..--+..+..-
T Consensus 186 ~~~dL~~l~ap 196 (371)
T PF14664_consen 186 PGFDLESLLAP 196 (371)
T ss_pred CCccHHHHHHh
Confidence 43334444433
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.77 Score=44.75 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~ 212 (363)
....++.+.+. +...|..|...+.+ +...-.++++..+|.+.++.+|..|+.+||.+- +|
T Consensus 45 ~~~~~~~l~~~--~~~vr~~aa~~l~~----------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~------ 104 (335)
T COG1413 45 ADELLKLLEDE--DLLVRLSAAVALGE----------LGSEEAVPLLRELLSDEDPRVRDAAADALGELG--DP------ 104 (335)
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHhh----------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch------
Confidence 44455555554 45566666554222 112235778889999999999999999888653 22
Q ss_pred HHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 017926 213 LELGALSKLMKMVKS-SFVEEAVKALYTVSSL 243 (363)
Q Consensus 213 le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsL 243 (363)
..+|.|++++.+ ++..+|..+.++|..+
T Consensus 105 ---~a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 105 ---EAVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred ---hHHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 468999999985 6678899999999887
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.35 Score=44.47 Aligned_cols=133 Identities=14% Similarity=0.023 Sum_probs=84.3
Q ss_pred HHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH
Q 017926 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (363)
Q Consensus 151 ~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~ 230 (363)
..|+.-+..++......-+-.--..+|+|+..+.++..-|+..|..+|-+++++.+..... .++.+....++.++
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNP 145 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCH
Confidence 4567777777666543322122235788889999999999999999999999986621221 15666677788888
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhc----CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 231 EEAVKALYTVSSLIRNNLAGQEMFYVE----AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~~a~~~f~~~----gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+|..++..+..++..++.....+... .-.+.+..++.+. +..+|..|-.++..+...
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHH
Confidence 999999999999988877222222222 2456777778877 567888888888887653
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.15 Score=53.79 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=61.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh
Q 017926 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (363)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~ 256 (363)
..++..-+ .+...+..|+..|......-|..|+. +|..+++|..+++..+|+.|+..|..+|++++.....+
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 33444444 47899999999999999999999987 56789999999999999999999999999988766554
Q ss_pred cCcHHHHHHhhcCCC
Q 017926 257 EAGDLMLQDILGNSS 271 (363)
Q Consensus 257 ~gG~~~L~~lL~s~~ 271 (363)
.++|+++|+++.
T Consensus 98 ---aDvL~QlL~tdd 109 (556)
T PF05918_consen 98 ---ADVLVQLLQTDD 109 (556)
T ss_dssp ---HHHHHHHTT---
T ss_pred ---HHHHHHHHhccc
Confidence 468999998863
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.06 E-value=1 Score=48.85 Aligned_cols=195 Identities=12% Similarity=0.013 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcC---CH---------HHHHHhcCCCCHHHHHHHHH
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLG---GL---------SVLVGQLNHPDTDIRKISAW 196 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lG---gl---------~~Li~lL~s~~~~Ir~~Aa~ 196 (363)
=+.-+...-++|.|...+..-|..|--.|-.-+...|....-.-.. ++ ..++.-|.++.|.....|+.
T Consensus 33 f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq 112 (859)
T KOG1241|consen 33 FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQ 112 (859)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHH
Confidence 3445555556666665555556555555555444444322111100 11 12345567788899999999
Q ss_pred HHHHHhcc-ChHHHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcccHHHHHhc-CcHHHHHHhhcCCCcc
Q 017926 197 ILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFE 273 (363)
Q Consensus 197 ~Lgt~aqN-Np~~Q~~~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~-gG~~~L~~lL~s~~~~ 273 (363)
|++.+|-- =|..|= -+.++.|+....++.. .++..++-||+-+|.+-.|. ...... ..+..++.-++...++
T Consensus 113 ~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s 187 (859)
T KOG1241|consen 113 CVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETS 187 (859)
T ss_pred HHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCc
Confidence 99988741 111110 1455666666665544 47899999999999885553 222233 4566777777766567
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 274 ~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+|.-|..+|.+=.... ...+......+-++.-+++.-+++|..++-+|+.||.
T Consensus 188 ~~vRLaa~~aL~nsLef~----~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Clv 242 (859)
T KOG1241|consen 188 AAVRLAALNALYNSLEFT----KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLV 242 (859)
T ss_pred hhHHHHHHHHHHHHHHHH----HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHH
Confidence 788989988887655321 1111122222334455566677889999999999987
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.092 Score=49.78 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=43.4
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHH-HHHHHcCcHHHHHHhhcCCCH
Q 017926 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ-KQVLELGALSKLMKMVKSSFV 230 (363)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q-~~~le~G~lp~Ll~LL~s~~~ 230 (363)
+..|+++|. .+++-.|+.|.-+|.++++...... ....+.+.|..|+..+.....
T Consensus 174 ~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 174 FHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 445667774 5789999999999999999766555 555677999999999987543
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.056 Score=34.50 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
.+|.+++++++++..||..|+++|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 379999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.83 Score=49.64 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=87.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcH-HHHHHhhcCCCHHHH---HHHHHHHHHHh---cCCcccH
Q 017926 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL-SKLMKMVKSSFVEEA---VKALYTVSSLI---RNNLAGQ 251 (363)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~l-p~Ll~LL~s~~~~v~---~kAL~ALSsLi---R~~~~a~ 251 (363)
++..|++.++.+|.+||..++.++---..|++.-+ .|-+ -.|...|..+.+++- .+|++||-|.+ +-+||..
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~-m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~ 882 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL-MGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK 882 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH-HHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence 34577899999999999999999864334444321 1112 246678888777764 46666666655 1134432
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHH
Q 017926 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEH 331 (363)
Q Consensus 252 ~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL 331 (363)
+-++-|..+|++. ..|++....-++..++.. .++....=.=...|--|+++|+..+..++..+..++
T Consensus 883 ------dllPrltPILknr--heKVqen~IdLvg~Iadr-----gpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 883 ------DLLPRLTPILKNR--HEKVQENCIDLVGTIADR-----GPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred ------hhcccchHhhhhh--HHHHHHHHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5578888899887 689999999999999863 222211100123444556666655555555554443
Q ss_pred H
Q 017926 332 V 332 (363)
Q Consensus 332 ~ 332 (363)
+
T Consensus 950 G 950 (1172)
T KOG0213|consen 950 G 950 (1172)
T ss_pred h
Confidence 3
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.4 Score=46.61 Aligned_cols=168 Identities=14% Similarity=0.094 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--cChHHHHHHHHcCcHHHHHHhh
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq--NNp~~Q~~~le~G~lp~Ll~LL 225 (363)
..|..+++-+.-+.+..+-.-.++--..+|.+.+-|.++.++||..+-.+|-.++. .||.+|.. +|.|++-+
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~------ip~Lld~l 342 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKI------IPTLLDAL 342 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHH------HHHHHHHh
Confidence 45778888888777777777777777889999999999999999999999987775 68887775 79999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhH
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~--~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l 303 (363)
.+++.. -.+++..|+.- .+ -.+++.-.+.+++.+|+.. .-+..++++++-.+-++|... .|+....-+
T Consensus 343 ~dp~~~-~~e~~~~L~~t--tF----V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv---eDp~~lapf 412 (569)
T KOG1242|consen 343 ADPSCY-TPECLDSLGAT--TF----VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV---EDPKDLAPF 412 (569)
T ss_pred cCcccc-hHHHHHhhcce--ee----eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh---cCHHHHhhh
Confidence 886632 22334433321 11 1122334566666665432 113346799999999999742 232222211
Q ss_pred HhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 304 RDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
. ..++|.+-..+....+++|+-+++||.
T Consensus 413 l-~~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 413 L-PSLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred H-HHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 1 123344444444558999999999974
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.7 Score=43.30 Aligned_cols=175 Identities=17% Similarity=0.095 Sum_probs=125.9
Q ss_pred HHHHHHHHHcccCC-CchhhHHhcCCHHHHHH-hc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC
Q 017926 151 QRALQELLILVEPI-DNANDLSKLGGLSVLVG-QL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (363)
Q Consensus 151 ~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~-lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s 227 (363)
..++-.++.+++-- +.+...++.|.+.-|+. +- ..+-...+.+|..+++-+-||+...+...-..+++-.|++-+.-
T Consensus 200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 45566666666643 45666666777776665 33 34667888999999999999999999988888999999887641
Q ss_pred ----C-----CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCC
Q 017926 228 ----S-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298 (363)
Q Consensus 228 ----~-----~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~ 298 (363)
+ ..+.-.....+||++++. +.+...|....|++...-.++.++ ..|..+...|-+..... ..-.
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~Kk---~sr~SalkvLd~am~g~---~gt~ 352 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLREKK---VSRGSALKVLDHAMFGP---EGTP 352 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHHHH---HhhhhHHHHHHHHHhCC---CchH
Confidence 1 124467888999999985 788999999999998888888752 35677888888877521 1125
Q ss_pred cchhHHhCCcHHHHHHhcc---------C-CChhHHHHHHHHHH
Q 017926 299 EPPLFRDRFFLKSVVDLTA---------S-ADLDLQEKVFLEHV 332 (363)
Q Consensus 299 ~~~~l~~~g~v~~Lv~lL~---------~-~d~~lqE~al~aL~ 332 (363)
.+..|++.+.++.+..+.- . .-.+.-|++..-|+
T Consensus 353 ~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siia 396 (536)
T KOG2734|consen 353 NCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILA 396 (536)
T ss_pred HHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHH
Confidence 6777888777776665543 1 13566677777766
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.5 Score=45.37 Aligned_cols=96 Identities=19% Similarity=0.117 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHH
Q 017926 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 311 (363)
Q Consensus 232 v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~ 311 (363)
....|+..|-.++=-||+.+..|.+..++++|+.+|...+ +..++..++.++.++.. .++.+...|.+.+.+..
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~-~~~i~~a~L~tLv~iLl-----d~p~N~r~FE~~~Gl~~ 180 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSN-PPAIQSACLDTLVCILL-----DSPENQRDFEELNGLST 180 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCC-CchHHHHHHHHHHHHHH-----cChHHHHHHHHhCCHHH
Confidence 4567888888888889999999999999999999995543 46688888888877775 46788889999999999
Q ss_pred HHHhccCC--ChhHHHHHHHHHHh
Q 017926 312 VVDLTASA--DLDLQEKVFLEHVF 333 (363)
Q Consensus 312 Lv~lL~~~--d~~lqE~al~aL~~ 333 (363)
++.++++. +.+++-|...-|.+
T Consensus 181 v~~llk~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 181 VCSLLKSKSTDRELRLKCIEFLYF 204 (257)
T ss_pred HHHHHccccccHHHhHHHHHHHHH
Confidence 99999875 78888888777663
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.1 Score=38.42 Aligned_cols=73 Identities=16% Similarity=0.082 Sum_probs=58.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChH-HHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~-~Q~~~le~G~lp~Ll~LL~s~---~~~v~~kAL~ALSsLiR~~~ 248 (363)
+..|-.-|+++++.++..|..+|-.++.|... .+..+.....+..|++++... +..|+.|++.-|-+-...++
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34445667889999999999999999999855 888888878888899999863 46788888888777655443
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.17 Score=54.61 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=97.7
Q ss_pred CCHHHHHHhcCC--C-----CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 174 GGLSVLVGQLNH--P-----DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 174 Ggl~~Li~lL~s--~-----~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
+.+|.|+++|.. + +=.+-+.|..||.-.+|. +.+.++. -++|-+=+-+++++-..+..|+.|.+|+..+
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 456677787754 1 123667777888877775 3333333 2334333455566667788999999999988
Q ss_pred CcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHH
Q 017926 247 NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (363)
Q Consensus 247 ~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~ 326 (363)
-.+.+..-+..++++.++.++.++ ..-+|.-++|.+..++..- .+...........+..++.-|.. .+.+-..
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l----~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N 467 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADFL----PEAIINQELLQSKLSALLEGLND-EPRVASN 467 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhc----hhhcccHhhhhHHHHHHHHHhhh-CchHHHH
Confidence 666677777789999999999965 5667889999999999642 12222333334555555555543 5666666
Q ss_pred HHHHHH
Q 017926 327 VFLEHV 332 (363)
Q Consensus 327 al~aL~ 332 (363)
+.+|+.
T Consensus 468 ~CWAf~ 473 (859)
T KOG1241|consen 468 VCWAFI 473 (859)
T ss_pred HHHHHH
Confidence 666655
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.94 Score=48.91 Aligned_cols=130 Identities=19% Similarity=0.196 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
-++..+.-+-.+-.-.++.|.-++|+. |-+..+++-..+++..||.+.+.+|+.+..+|...-+.+.+ +....|+.=+
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl 135 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRL 135 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHH
Confidence 334444444555555667888888664 67788888889999999999999999999877665555443 5566666666
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~l 283 (363)
.+..+.||..|+.|||-+= +.+..- +...+..+..+++.+. +..+|+-|+.-
T Consensus 136 ~Drep~VRiqAv~aLsrlQ-~d~~de----e~~v~n~l~~liqnDp-S~EVRRaaLsn 187 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQ-GDPKDE----ECPVVNLLKDLIQNDP-SDEVRRAALSN 187 (892)
T ss_pred hccCchHHHHHHHHHHHHh-cCCCCC----cccHHHHHHHHHhcCC-cHHHHHHHHHh
Confidence 6667789999999999883 222211 2346678888888774 45688766543
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.24 E-value=2.1 Score=46.77 Aligned_cols=198 Identities=20% Similarity=0.239 Sum_probs=125.0
Q ss_pred HhHHHHHHH--HHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHH
Q 017926 112 KRQMEIKEL--MEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189 (363)
Q Consensus 112 ~r~~~Lkea--l~~l~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~ 189 (363)
+|++-+-++ +.++|-|.-...| ++++.+.++.. +|.|+.=|-...-|=|..| +.-+ ..-.|.+-|+|++.-
T Consensus 50 ~r~rniaKLlYi~MLGypahFGqi-eclKLias~~f-~dKRiGYLaamLlLdE~qd----vllL-ltNslknDL~s~nq~ 122 (866)
T KOG1062|consen 50 KRHRNIAKLLYIHMLGYPAHFGQI-ECLKLIASDNF-LDKRIGYLAAMLLLDERQD----LLLL-LTNSLKNDLNSSNQY 122 (866)
T ss_pred HHHHHHHHHHHHHHhCCCccchhh-HHHHHhcCCCc-hHHHHHHHHHHHHhccchH----HHHH-HHHHHHhhccCCCee
Confidence 344444433 3445556555554 56666665443 3556655555555444433 2111 111233456788999
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcC
Q 017926 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s 269 (363)
+...|.-+||+++. |+... ...|...+++++.++-+|.||+.|.--++|.-|...+.|+. .-..+|.+
T Consensus 123 vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~-----~~~~lL~e 190 (866)
T KOG1062|consen 123 VVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI-----AFRKLLCE 190 (866)
T ss_pred ehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH-----HHHHHHhh
Confidence 99999999999984 54433 45788999999999999999999999999998887776653 33444544
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc---------------CCChhHHHHHHHHHHhh
Q 017926 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------------SADLDLQEKVFLEHVFC 334 (363)
Q Consensus 270 ~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~---------------~~d~~lqE~al~aL~~~ 334 (363)
. +..+-.-++.++..||. .+++....+.+ +++.+|..|+ ..|+-+|-+.++.|..+
T Consensus 191 k--~hGVL~~~l~l~~e~c~-----~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 191 K--HHGVLIAGLHLITELCK-----ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred c--CCceeeeHHHHHHHHHh-----cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 4 23455566777777775 34555566655 5555555542 23678888888887755
Q ss_pred ccc
Q 017926 335 GLV 337 (363)
Q Consensus 335 ~~~ 337 (363)
|..
T Consensus 262 Gq~ 264 (866)
T KOG1062|consen 262 GQN 264 (866)
T ss_pred cCC
Confidence 553
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.9 Score=40.72 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=62.8
Q ss_pred CHHHHHHhcC-CCCHHHHHHHHHHHHHHhccC-----------------------h--HHHHHHHH-------cCcHHHH
Q 017926 175 GLSVLVGQLN-HPDTDIRKISAWILGKASQNN-----------------------P--LVQKQVLE-------LGALSKL 221 (363)
Q Consensus 175 gl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNN-----------------------p--~~Q~~~le-------~G~lp~L 221 (363)
.+++++.+|. +.+..+|..|+++|+.+-.-+ + ..+....+ .-.++.|
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l 185 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLL 185 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHH
Confidence 5777888877 578888888888888766432 1 01111111 1245666
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 222 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 222 l~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
..++......++..|..+|+.+..++ ......+...++++ +..+|.+++..+..+-
T Consensus 186 ~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~--~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 186 IELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE--SLEVRKAALLALGEIG 241 (335)
T ss_pred HHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC--CHHHHHHHHHHhcccC
Confidence 66666666666777777777765443 23445566666665 4556777777666553
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.65 Score=49.50 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=87.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChHHH--HHHHHcCcHHHHHHhhcCCCHHHH---HHHHHHHHHHhcCCcccHH
Q 017926 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQ--KQVLELGALSKLMKMVKSSFVEEA---VKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q--~~~le~G~lp~Ll~LL~s~~~~v~---~kAL~ALSsLiR~~~~a~~ 252 (363)
.++.+|++..+.+|.+|+...|.++.-=..|- +.+.+.| -.|...|..+.+++- .+|+++|-+..|-. ..|.
T Consensus 608 tiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~-~mqp 684 (975)
T COG5181 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR-SMQP 684 (975)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc-ccCC
Confidence 34578899999999999999998875111111 1112223 235566666667664 46666665554422 1110
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 253 ~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
- -.|.++.|..+|++. ..|+......++.-+|.. .++-...=.=...+--|+++|.+.+.+++..|-.+++
T Consensus 685 P--i~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~-----~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 685 P--ISGILPSLTPILRNK--HQKVVANTIALVGTICMN-----SPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred c--hhhccccccHhhhhh--hHHHhhhHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 0 135678889999987 688999999999999863 2221111011235556777777777777776665554
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.05 E-value=2 Score=46.89 Aligned_cols=192 Identities=14% Similarity=0.093 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcCCH---------------HHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHH
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLGGL---------------SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lGgl---------------~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~ 212 (363)
.-++.|.+.|..++-+-||=-..+.++++ ..++.||+++|+.||..|...+-.++..+. +.
T Consensus 309 ~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N-v~--- 384 (866)
T KOG1062|consen 309 GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN-VR--- 384 (866)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc-HH---
Confidence 33455566666655555543233333322 357899999999999999999998885321 11
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHH-------h-cC------cHHHHHHhhcCC--------
Q 017926 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-------V-EA------GDLMLQDILGNS-------- 270 (363)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~-------~-~g------G~~~L~~lL~s~-------- 270 (363)
..+..|+..|.+.++.++....+-|.-++..|.|...-|+ . +| .+.-++.++.+.
T Consensus 385 ---~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~ 461 (866)
T KOG1062|consen 385 ---VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA 461 (866)
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence 2467788888888888888888888888877766422221 1 22 334444444332
Q ss_pred ---------------CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHHh
Q 017926 271 ---------------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHVF 333 (363)
Q Consensus 271 ---------------~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~~ 333 (363)
-+.+.+..-+.|.|.--..--+...+.+....+-+..++..|-+++.+. +..++--++.||.-
T Consensus 462 ~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~K 541 (866)
T KOG1062|consen 462 VLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLK 541 (866)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 1123344445555542221001111223333444566777888887754 67788888888887
Q ss_pred hcccccCchhhhh
Q 017926 334 CGLVFCTCPCIVR 346 (363)
Q Consensus 334 ~~~~~~~~~~~~r 346 (363)
+++..+.|-...|
T Consensus 542 LSsr~~s~~~ri~ 554 (866)
T KOG1062|consen 542 LSSRFHSSSERIK 554 (866)
T ss_pred HHhhccccHHHHH
Confidence 7777776655544
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.04 E-value=2 Score=45.34 Aligned_cols=224 Identities=15% Similarity=0.085 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHh
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKAS 202 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~----~~Ir~~Aa~~Lgt~a 202 (363)
.++....+++++++.++ +...+..|+..|..+--+.-.|..|+++.|+..|..++.+.. .++...+..+...+.
T Consensus 79 ~sp~~~a~~i~e~l~~~--~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm 156 (713)
T KOG2999|consen 79 ASPSHYAKRIMEILTEG--NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM 156 (713)
T ss_pred cCchHHHHHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 35567788999999876 346677799999999999999999999999999999997653 466666666555544
Q ss_pred ccChHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 017926 203 QNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (363)
Q Consensus 203 qNNp~~Q~~~le~G~lp~Ll~LL~s~--~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA 280 (363)
.---.+-+. +...++-....+.+-. +..+-..|+.-+-+++-+.+.-.+.+.+.--++.|+..++.. +.+++..|
T Consensus 157 ehgvvsW~~-~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~--n~~i~~~a 233 (713)
T KOG2999|consen 157 EHGVVSWES-VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS--NQRIQTCA 233 (713)
T ss_pred hhceeeeee-cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc--chHHHHHH
Confidence 221101110 1112233333444221 223445677777788877766666677777888888888875 67899999
Q ss_pred HHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccC----CChhHHHHHHHHHHhhc----ccccCchhhhhHHHHHH
Q 017926 281 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS----ADLDLQEKVFLEHVFCG----LVFCTCPCIVRGAVIVA 352 (363)
Q Consensus 281 ~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~----~d~~lqE~al~aL~~~~----~~~~~~~~~~r~~~l~~ 352 (363)
..++..|..- ..++.+..+.+.-....+...+.+ ..-.+|-.++.+|.+-. .....++....++-+++
T Consensus 234 ial~nal~~~----a~~~~R~~~~~~l~~~~~R~ai~~~~~~~~~~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~ 309 (713)
T KOG2999|consen 234 IALLNALFRK----APDDKRFEMAKSLEQKQFRNAIHSNVIRTERPIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELIS 309 (713)
T ss_pred HHHHHHHHhh----CChHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHH
Confidence 9999999862 344444444433333333322221 12333545555544211 12333454555566666
Q ss_pred hhhhccc
Q 017926 353 EYIYINF 359 (363)
Q Consensus 353 ~~~~~~~ 359 (363)
+++-+-|
T Consensus 310 ~lr~iaf 316 (713)
T KOG2999|consen 310 ELRRIAF 316 (713)
T ss_pred HHHhcCc
Confidence 6665544
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.6 Score=48.69 Aligned_cols=119 Identities=15% Similarity=0.169 Sum_probs=76.8
Q ss_pred HHHHHHHhh------cCCCCHHHHHHHHHHHHHcccCC----CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 017926 133 IQIAIDDLN------NSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (363)
Q Consensus 133 mk~al~~L~------~~~~s~e~k~~AL~~L~~Lve~i----DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~a 202 (363)
|.=++.++. .+..+.-.|..||..+..+++-+ -.++.+..+ ..+.+...++++.--+|++|||+++..+
T Consensus 412 l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f-lv~hVfP~f~s~~g~Lrarac~vl~~~~ 490 (1010)
T KOG1991|consen 412 LSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF-LVNHVFPEFQSPYGYLRARACWVLSQFS 490 (1010)
T ss_pred HHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH-HHHHhhHhhcCchhHHHHHHHHHHHHHH
Confidence 444555555 22233455666766666655432 234444444 5667778889999999999999999999
Q ss_pred ccChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHH
Q 017926 203 QNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMF 254 (363)
Q Consensus 203 qNNp~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f 254 (363)
.-+=+.+..+. .++..-.+.|.+ ..-+|++.|..||.+++++++.+-..+
T Consensus 491 ~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 491 SIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred hccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 43222222222 345666667774 445899999999999999977653333
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=1.8 Score=48.27 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhc
Q 017926 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 268 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~ 268 (363)
.++..++-+++...++--..--. ...+.+..++--+.+....+|.||+++||.+.-..+. ..|. +-++.|..-|.
T Consensus 148 ai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~ly~--~li~~Ll~~L~ 222 (1233)
T KOG1824|consen 148 AIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--DLYV--ELIEHLLKGLS 222 (1233)
T ss_pred hhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--HHHH--HHHHHHHhccC
Confidence 36666666666666542111111 2234445555555665567899999999998765332 2222 33455555555
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhc---cCCChhHHHHHHHHHH
Q 017926 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT---ASADLDLQEKVFLEHV 332 (363)
Q Consensus 269 s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL---~~~d~~lqE~al~aL~ 332 (363)
.+..+..+| --.-+|+.++.+. ...+-. .-...++.+.+.. ..+|.+++|..+.++.
T Consensus 223 ~~~q~~~~r-t~Iq~l~~i~r~a----g~r~~~--h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 223 NRTQMSATR-TYIQCLAAICRQA----GHRFGS--HLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred CCCchHHHH-HHHHHHHHHHHHh----cchhhc--ccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 443233333 3456677777642 111111 1246778888877 6679999999999988
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.99 Score=47.74 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=110.7
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
.-+..++.-+..+.+.+|...+.|+..+.-.-..-+ ..-.++.+.+++++.+...+.++.|++..+++|+. ...
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~ 169 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES 169 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence 345667777888999999999999988875322111 12467889999998888889999999999999854 577
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHH-HHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc---CCChhHHHHHHH
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRK-AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---SADLDLQEKVFL 329 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~k-A~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~---~~d~~lqE~al~ 329 (363)
+.+.+-+..|...+++.+ ...++. +.+....++.. ..+. ++..+++.+..+|. .....+|+.+..
T Consensus 170 ~~~~~~l~~l~~ai~dk~--~~~~re~~~~a~~~~~~~----Lg~~-----~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~ 238 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKK--SALNREAALLAFEAAQGN----LGPP-----FEPYIVPILPSILTNFGDKINKVREAAVE 238 (569)
T ss_pred hhhhhHHHHHHHHhcccc--hhhcHHHHHHHHHHHHHh----cCCC-----CCchHHhhHHHHHHHhhccchhhhHHHHH
Confidence 888888899999988874 234454 44444444432 2222 34455555555554 446788877766
Q ss_pred HHHhhcccccCchhhhhHHHHHHhhhhcccccC
Q 017926 330 EHVFCGLVFCTCPCIVRGAVIVAEYIYINFSAF 362 (363)
Q Consensus 330 aL~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 362 (363)
|.. +.+..+.+.... .++++-...+.+..|
T Consensus 239 a~k--ai~~~~~~~aVK-~llpsll~~l~~~kW 268 (569)
T KOG1242|consen 239 AAK--AIMRCLSAYAVK-LLLPSLLGSLLEAKW 268 (569)
T ss_pred HHH--HHHHhcCcchhh-HhhhhhHHHHHHHhh
Confidence 654 334555555544 455555444444444
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.7 Score=43.31 Aligned_cols=200 Identities=15% Similarity=0.158 Sum_probs=130.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcccCCC-chh----hHHhcCCHHHHHHhcCCCCHH
Q 017926 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTL--SLEDSQRALQELLILVEPID-NAN----DLSKLGGLSVLVGQLNHPDTD 189 (363)
Q Consensus 117 Lkeal~~l~~~~d~~lmk~al~~L~~~~~--s~e~k~~AL~~L~~Lve~iD-nAn----~l~~lGgl~~Li~lL~s~~~~ 189 (363)
|+.+++.+ ..+-+..+.+-+|.-.-. +.-.|.-++..+..++|+-| |+. ..++.|.++.++.|+..++.+
T Consensus 67 LERLfkak---egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedde 143 (524)
T KOG4413|consen 67 LERLFKAK---EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDE 143 (524)
T ss_pred HHHHHhhc---cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHH
Confidence 34455433 234455555555543322 23467888999999999887 332 334667888889999999999
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHcCcHHHH--HHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh
Q 017926 190 IRKISAWILGKASQNNPLVQKQVLELGALSKL--MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~L--l~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL 267 (363)
+...|...|..++- -|..-+.+.+...+..+ ..+....++-+|++.+.-|--+-.-.|......-+.|-+..|..=|
T Consensus 144 VAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 144 VAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 99999999999885 56666666666555433 2333333333344443333333222455556666777788888778
Q ss_pred cCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHH
Q 017926 268 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKV 327 (363)
Q Consensus 268 ~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~a 327 (363)
+... |.-++....-+++.|+. ..+.++.+-+.|++..+.+.+...|.+--|+.
T Consensus 223 kGte-DtLVianciElvteLae------teHgreflaQeglIdlicnIIsGadsdPfekf 275 (524)
T KOG4413|consen 223 KGTE-DTLVIANCIELVTELAE------TEHGREFLAQEGLIDLICNIISGADSDPFEKF 275 (524)
T ss_pred cCCc-ceeehhhHHHHHHHHHH------HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHH
Confidence 7743 56678888888999885 34567788889999999999987655544443
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.79 Score=39.92 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=58.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcC
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s------~~~~v~~kAL~ALSsLiR~ 246 (363)
++..|..-|++.++.++..|..+|-++++|. +.++..|...+.+..|++++.. .+..|+.|.+.-|=.-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556667788999999999999999999997 6688889999999999999963 3467888877766554433
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.35 Score=43.01 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=75.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-cHHHHHhcCcHHHHHHhhcCC-------CccHHHHHHHHHHHHHHh
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNS-------SFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~-a~~~f~~~gG~~~L~~lL~s~-------~~~~klr~kA~~lL~~L~ 288 (363)
-...+++.+.+.+... +.+..|.-.+|+.+. ..+.|++.||+..|..+|..- ..+..+...++..+..|+
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3445667776654322 888889988887654 578999999999999987431 124457778888888888
Q ss_pred hhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.. .......+...+++..|+..|.++++.++..++..|.
T Consensus 145 n~-----~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~ 183 (187)
T PF06371_consen 145 NT-----KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILA 183 (187)
T ss_dssp SS-----HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHH
T ss_pred cc-----HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 42 2222334446899999999999999999999988766
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.9 Score=41.47 Aligned_cols=169 Identities=15% Similarity=0.099 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhhcCC---CCH---HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCC-----CHHHHHHHHHH
Q 017926 129 DAQLIQIAIDDLNNST---LSL---EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAWI 197 (363)
Q Consensus 129 d~~lmk~al~~L~~~~---~s~---e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~-----~~~Ir~~Aa~~ 197 (363)
-+.+.+|.+.+...-+ .+. ..-..||.-|.-++...|....|.+..-.-.|..+|+.. -+.+|-.+..+
T Consensus 40 i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGV 119 (262)
T PF04078_consen 40 IAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGV 119 (262)
T ss_dssp HHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHH
Confidence 4567788887764322 233 334567777777778889999999988777777888643 37799999999
Q ss_pred HHHHhc-cChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc------cHHHHHhc-CcHHHHHHhhcC
Q 017926 198 LGKASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYVE-AGDLMLQDILGN 269 (363)
Q Consensus 198 Lgt~aq-NNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~------a~~~f~~~-gG~~~L~~lL~s 269 (363)
||.+++ +.+++...+++...+|..++.+..++.--+.-|.+-+--|+-+... ..+.|... ..+..++.-+..
T Consensus 120 IgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~ 199 (262)
T PF04078_consen 120 IGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK 199 (262)
T ss_dssp HHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc
Confidence 999998 5678888889999999999999998776688888888887765322 13455543 344444444433
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 270 ~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
. .+.++-+.+......|+. ++..++.+.
T Consensus 200 ~-pS~RLLKhIIrCYlRLsd------nprar~aL~ 227 (262)
T PF04078_consen 200 Q-PSPRLLKHIIRCYLRLSD------NPRAREALR 227 (262)
T ss_dssp S---HHHHHHHHHHHHHHTT------STTHHHHHH
T ss_pred C-CChhHHHHHHHHHHHHcc------CHHHHHHHH
Confidence 2 267887888887777773 555555544
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.9 Score=47.48 Aligned_cols=204 Identities=15% Similarity=0.098 Sum_probs=120.8
Q ss_pred HhHHHHHHHHHHcCCCCHH----HHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC
Q 017926 112 KRQMEIKELMEKLKTPSDA----QLIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH 185 (363)
Q Consensus 112 ~r~~~Lkeal~~l~~~~d~----~lmk~al~~L~~~~--~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s 185 (363)
|+++.|++++.. |+-. +.+...+..+.++. .+.-.+...+..|..+++-.++-..-.-...++-+|=+++.
T Consensus 673 K~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke 749 (1176)
T KOG1248|consen 673 KAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKE 749 (1176)
T ss_pred HHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc
Confidence 577788888864 3322 22222333332221 22344556666666666666522211122345555555577
Q ss_pred CCHHHHHHHHHHHHHHh--cc------ChHHHHHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 186 PDTDIRKISAWILGKAS--QN------NPLVQKQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~a--qN------Np~~Q~~~le~G~lp~Ll~LL~s----~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
.+..-|..|..||-.++ |+ +| +.. .|...+.++.. +++-++..-+.|+.+++.++....+.
T Consensus 750 ~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~-----~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~ 822 (1176)
T KOG1248|consen 750 VNVKARRNAFALLVFIGAIQSSLDDGNEP--ASA-----ILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD 822 (1176)
T ss_pred ccHHHHhhHHHHHHHHHHHHhhhcccccc--hHH-----HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 88999999999888877 22 22 121 34444444443 33444444489999998876665544
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
-.-.+-++.+..+|.+. ...++.-|+.++.-++. ..|+.+-.-...-+++.+..+++.....++-++..-+.
T Consensus 823 ~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~-----~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 823 ETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVY-----KFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH-----cCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44456677788888886 45688899999998886 34443333333447788888777667777776655443
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.7 Score=40.47 Aligned_cols=211 Identities=14% Similarity=0.062 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHcccCC-CchhhHHh-cCCHHHHHH-------hcCCCC--HHHHHHHHHHH--HHHhccChHHHHHH
Q 017926 146 SLEDSQRALQELLILVEPI-DNANDLSK-LGGLSVLVG-------QLNHPD--TDIRKISAWIL--GKASQNNPLVQKQV 212 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~i-DnAn~l~~-lGgl~~Li~-------lL~s~~--~~Ir~~Aa~~L--gt~aqNNp~~Q~~~ 212 (363)
+++.|+.|+.+|..--|.. |.|--+-. .|-+..|++ .|..++ +..--+.|.+| =.++..+|+.+..|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 4688999999999877765 44544443 455555543 233221 22222333333 22333599999999
Q ss_pred HHcCcHHHHHHhhcCCCH-----HHHHHHHHHHHHHhcCCc-ccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 213 LELGALSKLMKMVKSSFV-----EEAVKALYTVSSLIRNNL-AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 213 le~G~lp~Ll~LL~s~~~-----~v~~kAL~ALSsLiR~~~-~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
++....--|...|+..+. .+|..++.-|+++++.+. +...-+....-++...+.+... +...|.-|.|.+.-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQK 165 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 999876666677765432 358899999999999744 4444555667889999999876 45678899999998
Q ss_pred Hhhhh--hhcCCCCcchhHH-hCCcHHHHHHhc-cCCChhHHHHHHHHHHhhcccccCchhhhhHHHHHHhhhhccccc
Q 017926 287 LAKCQ--LENMHKVEPPLFR-DRFFLKSVVDLT-ASADLDLQEKVFLEHVFCGLVFCTCPCIVRGAVIVAEYIYINFSA 361 (363)
Q Consensus 287 L~~~~--~~~~~~~~~~~l~-~~g~v~~Lv~lL-~~~d~~lqE~al~aL~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~ 361 (363)
+.... ++..- ...++|. =..++..++..+ ..+++.+..++.+|-.-++- .+-..+..| ..+|.+..-.+|..
T Consensus 166 IL~dd~GL~yiC-~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~-~~LP~~Lrd~~f~~ 241 (262)
T PF04078_consen 166 ILLDDVGLNYIC-QTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALR-QCLPDQLRDGTFSN 241 (262)
T ss_dssp HHHSHHHHHHHT-SSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHH-HHS-GGGTSSTTTT
T ss_pred HHcchhHHHHHh-cCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHH-HhCcHHHhcHHHHH
Confidence 87532 11000 1222322 123445555444 34588888999888762221 122333444 45666665555543
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.36 Score=37.48 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
++.|.|++|+++. .|.-...+.+.+.++.++++..+.+ -.+|--|.|+|+=+.+. ..+.+.+.+.
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHc
Confidence 4689999999998 4556666667899999999999765 57899999999988764 4555544443
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.16 E-value=2.5 Score=45.61 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHh------c-CCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK------L-GGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~------l-Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~a 202 (363)
++++.+..+.|.+++.+ ..+.|+.+|...+|+. |.-+.. + =.+|.++++.+|+++.||..|..|+-...
T Consensus 127 pelLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYN--TCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred hhHHHHHHHHhcCCccc--ccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 46677777777766521 2345556666665543 222211 1 14778889999999999999999998877
Q ss_pred ccChHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh-c-CcHHHHHHhhcCCCccHHHHHH
Q 017926 203 QNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-E-AGDLMLQDILGNSSFEIRLHRK 279 (363)
Q Consensus 203 qNNp~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~-~-gG~~~L~~lL~s~~~~~klr~k 279 (363)
-.++ |.....- ..+..|..+..+++++||.....|+.-++.-.++ ...- . |.++.++...++. +..+...
T Consensus 203 ~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~--dE~VALE 275 (885)
T KOG2023|consen 203 IIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDV--DENVALE 275 (885)
T ss_pred ecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCc--chhHHHH
Confidence 6554 3333322 5788888898888899999999999998865443 3332 2 4567777766665 5668899
Q ss_pred HHHHHHHHhh
Q 017926 280 AVSLVGDLAK 289 (363)
Q Consensus 280 A~~lL~~L~~ 289 (363)
|+-+...++.
T Consensus 276 ACEFwla~ae 285 (885)
T KOG2023|consen 276 ACEFWLALAE 285 (885)
T ss_pred HHHHHHHHhc
Confidence 9999999985
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.8 Score=37.66 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=59.6
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~ 247 (363)
++..|..-|++.++.++..|..+|-++++|. +..+..+...+.+..|++++.. .+..|+.|++..|-+-...+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4555666778899999999999999999995 6688888899999999999985 44678888888777655443
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.3 Score=50.47 Aligned_cols=104 Identities=15% Similarity=0.062 Sum_probs=73.4
Q ss_pred ChHHHHHHHHcCcHHHHHHhh---------c-CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC----
Q 017926 205 NPLVQKQVLELGALSKLMKMV---------K-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS---- 270 (363)
Q Consensus 205 Np~~Q~~~le~G~lp~Ll~LL---------~-s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~---- 270 (363)
.|...+.++...++..|+++. . ..+..+...|+-+|+|++-+++.+++.|.+.|+...+...|+..
T Consensus 11 d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~ 90 (446)
T PF10165_consen 11 DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS 90 (446)
T ss_pred CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence 344555566666677777776 2 23467889999999999999999999999999999999998765
Q ss_pred --CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH-hCCcHHHHHHhc
Q 017926 271 --SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR-DRFFLKSVVDLT 316 (363)
Q Consensus 271 --~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~-~~g~v~~Lv~lL 316 (363)
....-+-.|.+|+++++. +..+..++ +.+++..+++.|
T Consensus 91 ~~~d~~Fl~~RLLFLlTa~~--------~~~~~~L~~e~~~~~~l~~~L 131 (446)
T PF10165_consen 91 QPSDVEFLDSRLLFLLTALR--------PDDRKKLIEEHHGVELLTEAL 131 (446)
T ss_pred CChhHHHHHHHHHHHHhcCC--------hhHHHHHHHHhhhHHHHHHHH
Confidence 223344556666666554 34454544 457777777765
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.37 Score=42.58 Aligned_cols=145 Identities=12% Similarity=0.151 Sum_probs=91.8
Q ss_pred CHHHHHHhcC--CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHH
Q 017926 175 GLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 175 gl~~Li~lL~--s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~ 252 (363)
.+..++..|. ...+++|..|.-++...- +..++.+.+. .-..+-.++...+..-...++.+++.+--.-|....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3445666554 478899999999999884 3344443322 222233334332223577899999999888776655
Q ss_pred HHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-Chh-HHHHHHH
Q 017926 253 MFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD-LQEKVFL 329 (363)
Q Consensus 253 ~f~~-~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~-lqE~al~ 329 (363)
.++. .|-.+.+...+.....+..++..++-+|..=|. ++..+..+ ...+++-|-+.++.+ |.. ++..|+-
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~------d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI------DKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT------SHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc------cHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHH
Confidence 5554 555788888888333477888889989887773 44444444 445669999999655 444 5555544
Q ss_pred H
Q 017926 330 E 330 (363)
Q Consensus 330 a 330 (363)
+
T Consensus 153 ~ 153 (157)
T PF11701_consen 153 G 153 (157)
T ss_dssp H
T ss_pred H
Confidence 4
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.71 Score=49.98 Aligned_cols=137 Identities=17% Similarity=0.140 Sum_probs=103.6
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
+.++.++.+....+.+++...---+.+-++.+|.-+. ++++.+++=..++++.+|..|+...+++ |- +.
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l-~v-~~---- 117 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCL-RV-DK---- 117 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeE-ee-hH----
Confidence 3577888888888899999988889999988886443 5677777777777888898888888776 21 11
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+. ..-...|..+++++ +..+|+.++..+..+-. ...+.+.+.|++..|-+++...++.+...|+.+|.
T Consensus 118 i~-ey~~~Pl~~~l~d~--~~yvRktaa~~vakl~~--------~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~ 185 (734)
T KOG1061|consen 118 IT-EYLCDPLLKCLKDD--DPYVRKTAAVCVAKLFD--------IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALS 185 (734)
T ss_pred HH-HHHHHHHHHhccCC--ChhHHHHHHHHHHHhhc--------CChhhccccchhHHHHHHhcCCCchHHHHHHHHHH
Confidence 11 12356888888887 56688888888777753 33556678899999999999778888888888876
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=4.9 Score=44.95 Aligned_cols=204 Identities=16% Similarity=0.077 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhccChHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~-~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
.+..+.+..+.++..+...|+-|+-.|.++=...| .....+++ .+++.+++++.+|+..|+.+||+++-.|-
T Consensus 817 s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl--- 889 (1233)
T KOG1824|consen 817 SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNL--- 889 (1233)
T ss_pred hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCch---
Confidence 34556666666677777778888888887544433 33333333 66799999999999999999999998542
Q ss_pred HHHHHcCcHHHHHHhhcCCCH------------------H-H--HHHHHHHH-HHHhcCCcccHHHHH-hc-C-------
Q 017926 210 KQVLELGALSKLMKMVKSSFV------------------E-E--AVKALYTV-SSLIRNNLAGQEMFY-VE-A------- 258 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~------------------~-v--~~kAL~AL-SsLiR~~~~a~~~f~-~~-g------- 258 (363)
...+|-++....+... . . -+.-+|++ ..=|.+.+++.+-++ ++ |
T Consensus 890 -----~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep 964 (1233)
T KOG1824|consen 890 -----PKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP 964 (1233)
T ss_pred -----HhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh
Confidence 1234444444433221 0 0 01122222 222233333322222 11 1
Q ss_pred --cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 259 --GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 259 --G~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
-++.|...+.++. ...|.-++.++..... .++.-.+.+.. ..+.....+++.+|..++..|+.++...+=
T Consensus 965 esLlpkL~~~~~S~a--~~~rs~vvsavKfsis-----d~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 965 ESLLPKLKLLLRSEA--SNTRSSVVSAVKFSIS-----DQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAH 1036 (1233)
T ss_pred HHHHHHHHHHhcCCC--cchhhhhhheeeeeec-----CCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHc
Confidence 1234444455542 3345556666665553 23333333332 345667788899999999999999884444
Q ss_pred cccCchhhhhHHHHHHhh
Q 017926 337 VFCTCPCIVRGAVIVAEY 354 (363)
Q Consensus 337 ~~~~~~~~~r~~~l~~~~ 354 (363)
.-+.|....-..++|.-|
T Consensus 1037 NKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 1037 NKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred cCHhHHHHHHHHHHHHHH
Confidence 555555544445555443
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=92.35 E-value=2.7 Score=44.57 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=57.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
.+++|+..++..||.+|..-|..+|.+||+.-..+ ...|++||.+++.....-+=.+|.++++.++.+.-
T Consensus 63 a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL----- 132 (556)
T PF05918_consen 63 AQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL----- 132 (556)
T ss_dssp HHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHH-----
T ss_pred HHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH-----
Confidence 34444445568999999999999999987655543 56899999998876666667778888887665321
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 258 gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
+| ++.+++.+++.+..+|.++..+|..=.
T Consensus 133 ~~--lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 133 TG--LFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HH--HHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred HH--HHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 11 222333222235678999987665443
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=92.24 E-value=2.3 Score=37.15 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=59.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-HHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp-~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~ 248 (363)
+..|..=|++.++.++..|..+|-++++|.. ..+..+.....+..|++++.. .+..|+.|.+.-|-.-...++
T Consensus 39 ~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 39 LKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 4445566788999999999999999999976 578888888999999999998 567888888888777655443
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.23 E-value=4.4 Score=44.00 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcccCCCchhhHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhccChHH
Q 017926 149 DSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (363)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnAn~l~~lGgl~-~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~ 208 (363)
.|..|.-.|..|... -.|+...|+|. .++.+|+..+-.+-..|...|-.++.+||+.
T Consensus 164 vkqkaALclL~L~r~---spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~ 221 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRK---SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES 221 (938)
T ss_pred HHHHHHHHHHHHHhc---CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence 344443344444333 45666677765 6677777777666667777777777766644
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.19 E-value=4.2 Score=42.49 Aligned_cols=213 Identities=18% Similarity=0.143 Sum_probs=137.1
Q ss_pred HHHHhHHHHHHHHHHcCC----CCHHHHHHHHHHHhhcCCCC----HHHH-HHHHHHHHHcccCCCchhhHHhcCCHHHH
Q 017926 109 ELKKRQMEIKELMEKLKT----PSDAQLIQIAIDDLNNSTLS----LEDS-QRALQELLILVEPIDNANDLSKLGGLSVL 179 (363)
Q Consensus 109 ~l~~r~~~Lkeal~~l~~----~~d~~lmk~al~~L~~~~~s----~e~k-~~AL~~L~~Lve~iDnAn~l~~lGgl~~L 179 (363)
|+ +|+++-.+-|+.-+- +...+.+|+-++.+...-.+ .|.. ..|+--|..+.+++..--.+..-+-+..|
T Consensus 231 El-kRye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrrkniV~mL 309 (791)
T KOG1222|consen 231 EL-KRYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRRKNIVAML 309 (791)
T ss_pred HH-HHHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHH
Confidence 45 477776665554321 11234455555444322111 1222 34566677788888887788888888999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc
Q 017926 180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (363)
Q Consensus 180 i~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG 259 (363)
+..|.-++.++.......|-.+.- -.+....+.+.|.+.+|++|+....+.++...+.-+=++-= ....+...+..|-
T Consensus 310 VKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSF-D~glr~KMv~~Gl 387 (791)
T KOG1222|consen 310 VKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSF-DSGLRPKMVNGGL 387 (791)
T ss_pred HHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccc-cccccHHHhhccc
Confidence 999998888888887777766653 12234556678999999999999888776655555555532 2334567777888
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhH-HHHHHHHHHhh
Q 017926 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDL-QEKVFLEHVFC 334 (363)
Q Consensus 260 ~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~l-qE~al~aL~~~ 334 (363)
++.|..++.+++. +.-|+..++++. .+......|.--..++.+.+.+-++ +..+ .+-.+.|+.+|
T Consensus 388 lP~l~~ll~~d~~----~~iA~~~lYh~S------~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ 454 (791)
T KOG1222|consen 388 LPHLASLLDSDTK----HGIALNMLYHLS------CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLC 454 (791)
T ss_pred hHHHHHHhCCccc----chhhhhhhhhhc------cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 9999999998742 223666666665 4667777887778888888776543 2222 23334455543
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.7 Score=35.47 Aligned_cols=91 Identities=12% Similarity=-0.030 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh--cCcHHHHHHhhc
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILG 268 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~--~gG~~~L~~lL~ 268 (363)
|..+..+|+.++...++.-...+ .-.+|+++..+.+++..||..|..+|-++++.... .++. ..-++.|..++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~---~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARG---EILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHc
Confidence 55666677776665544422222 25799999999999999999999999999886543 3332 356788888888
Q ss_pred CCCccHHHHHHHHHHHHHHh
Q 017926 269 NSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 269 s~~~~~klr~kA~~lL~~L~ 288 (363)
++ +..+|. ++.++-.|.
T Consensus 79 D~--d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 79 DP--DENVRS-AAELLDRLL 95 (97)
T ss_pred CC--chhHHH-HHHHHHHHh
Confidence 76 555655 556665554
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.05 E-value=6.1 Score=37.92 Aligned_cols=201 Identities=19% Similarity=0.167 Sum_probs=129.6
Q ss_pred CChHHHHhhHhhcCCCCCcccchhcccCCCHHHHHHhHH---HH-HHHHHHcCCCCHHHHHHHHHHHhh---cCCCCH--
Q 017926 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQM---EI-KELMEKLKTPSDAQLIQIAIDDLN---NSTLSL-- 147 (363)
Q Consensus 77 ~~l~~LL~wsi~~s~~~~~~~~~~~~~~~~~e~l~~r~~---~L-keal~~l~~~~d~~lmk~al~~L~---~~~~s~-- 147 (363)
.+-+++-+|.++-+.|++- |.+ . .|+-+|++ .+ -.++..++. ...+.+|.+.+.- -+..++
T Consensus 23 ~~~dk~~~~i~~l~~~p~r-E~a--L-----~ELskkre~~~dlA~~lW~s~g~--~~~LLqEivaiYp~l~p~~l~~~q 92 (293)
T KOG3036|consen 23 SNNDKAYQLILSLVSPPTR-EMA--L-----LELSKKREPFPDLAPMLWHSFGT--MVALLQEIVAIYPSLSPPTLTPAQ 92 (293)
T ss_pred ccccchhhHHHHhhCCchH-HHH--H-----HHHHHhccCCccccHHHHHhcch--HHHHHHHHHhcccccCCCCCCccc
Confidence 3456688999998887662 111 0 11111211 11 234555553 4567777777542 221221
Q ss_pred -HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC-----CCHHHHHHHHHHHHHHhccCh-HHHHHHHHcCcHHH
Q 017926 148 -EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWILGKASQNNP-LVQKQVLELGALSK 220 (363)
Q Consensus 148 -e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s-----~~~~Ir~~Aa~~Lgt~aqNNp-~~Q~~~le~G~lp~ 220 (363)
-.-..||.-|.-++...|....|.+..-=-.+-.+|+. +.+-+|-.+..+||.+++|.+ ++-...+..+.+|.
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 23466777777778888999999987644445567753 568899999999999999754 45555567799999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCcc------cHHHHHhcCc-H-HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 221 LMKMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYVEAG-D-LMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 221 Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~------a~~~f~~~gG-~-~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.++....+++.-+.-|.+-+.-|+-+... ..+.|...+- + .++.++.+.+ +.++-..+......|+.
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p--s~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP--SPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcC
Confidence 99999999887788888888887765433 1355555443 2 3444444444 67788888888777763
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.98 E-value=2.4 Score=44.69 Aligned_cols=163 Identities=12% Similarity=0.091 Sum_probs=114.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhcCCcccHHH
Q 017926 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV----EEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~----~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
.+.+.+.+++..-|..|..-+..+.- .+.....|+...++..|.+++.++.. .+..-.+.|.|.+..+.-...+.
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 44566777787888888888888775 56677789999999999999998754 45678899999988775544433
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
+-.. ++.-...+..-+..+..+-..|+..+.++.. ..+.....+.++--+..|+.+|+..|..++-+|...+.
T Consensus 166 ~~~~-fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl-----~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~n- 238 (713)
T KOG2999|consen 166 VSND-FVVSMASYVNAKREDANTLLAALQMLESLVL-----GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLN- 238 (713)
T ss_pred cccH-HHHHHHHHHhhhhhcccchHHHHHHHHHHHh-----CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHH-
Confidence 3322 2222222222222233455678888888875 35567778888899999999999999999988666555
Q ss_pred hcccccCchhhhhHHHH
Q 017926 334 CGLVFCTCPCIVRGAVI 350 (363)
Q Consensus 334 ~~~~~~~~~~~~r~~~l 350 (363)
++..-|++..|...+
T Consensus 239 --al~~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 239 --ALFRKAPDDKRFEMA 253 (713)
T ss_pred --HHHhhCChHHHHHHH
Confidence 556668887665433
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.2 Score=39.81 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcH
Q 017926 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 309 (363)
Q Consensus 230 ~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v 309 (363)
+.+|..++-+++-++..+|...+.+ ++.+..+|+++ ++.+|+.|+..+++|..+ + .+.-.|-+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~-----d-----~ik~k~~l 64 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCLRDE--DPLVRKTALLVLSHLILE-----D-----MIKVKGQL 64 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCC--CHHHHHHHHHHHHHHHHc-----C-----ceeehhhh
Confidence 5688999999999888787655443 67888999987 678999999999999862 1 12222333
Q ss_pred -HHHHHhccCCChhHHHHHHHHHH
Q 017926 310 -KSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 310 -~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..++.+|..+|++++..|..++.
T Consensus 65 ~~~~l~~l~D~~~~Ir~~A~~~~~ 88 (178)
T PF12717_consen 65 FSRILKLLVDENPEIRSLARSFFS 88 (178)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77778888889999999888866
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.67 E-value=11 Score=40.13 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCH-HHHHHHHHHHHHHhc--cChHHHHHHHHcC-cHHHHH
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT-DIRKISAWILGKASQ--NNPLVQKQVLELG-ALSKLM 222 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~-~Ir~~Aa~~Lgt~aq--NNp~~Q~~~le~G-~lp~Ll 222 (363)
++-+..|+-=+.++|.-..+.--..-.|-+..+++|+.++++ .++..|..+-+.+.. ..+...+. ++.| .+..|.
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~ 342 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLT 342 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHH
Confidence 455666777777776655555555555667777888877665 577777665543332 11111111 3443 577788
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+.++++..+.|..++.=|.-+-+.+|. +-......-+..|..-|++. +..+-.++.++++++|.
T Consensus 343 ~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~--sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 343 KYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDR--SDEVVLLALSLLASICS 406 (675)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCc--hhHHHHHHHHHHHHHhc
Confidence 899988888899999999999877654 33333345678888888876 34578899999999996
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=91.47 E-value=1.5 Score=44.43 Aligned_cols=123 Identities=18% Similarity=0.172 Sum_probs=87.1
Q ss_pred HhcCCC---CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc-CC---CHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 181 GQLNHP---DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS---FVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 181 ~lL~s~---~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~-s~---~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
..+++. -+.|-..|+.++.....|.|.+-..+.+.|.++.+++-+. .. +.++-...-.+|++||=| ..+.++
T Consensus 113 ~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~ 191 (379)
T PF06025_consen 113 HILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEK 191 (379)
T ss_pred HHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHH
Confidence 344443 4788999999999999999999999999999999999888 32 345555566777878765 678999
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHH-HHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHR-KAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~-kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
|.+.+-+..+.+++.++..-..++. ..+..+.+-..+ +-+++|..++.+.+
T Consensus 192 ~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DE-L~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 192 VKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDE-LMRHHPSLKPDIID 243 (379)
T ss_pred HHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHH-HHccCHHHHHHHHH
Confidence 9999999999999988632211222 244444433322 11466666665543
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.29 E-value=8.3 Score=40.93 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=81.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-cHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMF 254 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~-a~~~f 254 (363)
+..+..+|.++..+-|..+..-|..+-.+.| .|-.+......+.|++-|++.++.+..+++.-+++++..... +...|
T Consensus 338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~f 416 (675)
T KOG0212|consen 338 IEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKF 416 (675)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHH
Confidence 5566678899999999999999998876655 677777778999999999999999999999999999986432 22222
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 255 ~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
. .-|.+.+..+ ..-++.++.+.+..||.
T Consensus 417 l-----~sLL~~f~e~--~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 417 L-----LSLLEMFKED--TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred H-----HHHHHHHhhh--hHHHHhhhhHHHHHHHH
Confidence 2 2233334444 34588899999999986
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.21 E-value=5.5 Score=44.25 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHh--cCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~--lGgl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
.-.+|..|++.+-..+++-. -...+ .|-+..++... ...|..+-..|+.+|..++......-.. +-.+.+|.|+
T Consensus 266 ~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~ll 342 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNVFPSLL 342 (815)
T ss_pred chHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhhcchHH
Confidence 34678888888888776644 11111 22333444433 4678999999999999999865544111 2237889999
Q ss_pred HhhcCCCHHH---HHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCc
Q 017926 223 KMVKSSFVEE---AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE 299 (363)
Q Consensus 223 ~LL~s~~~~v---~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~ 299 (363)
+-+......+ .++++-++++.+. -..-.+.+...+++. +++++.....++...... .++..
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~ns~~----------l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~----~~~~~ 406 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILNSTP----------LSKMSEAILEALKGK--NPQIKGECLLLLDRKLRK----LGPKT 406 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhh----cCCcC
Confidence 9998766554 4566666666211 112345677778887 566788866666666642 33344
Q ss_pred chhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 300 PPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 300 ~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
...-.-.++++.++.+....+.++|+.++.++.
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~ 439 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVA 439 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHH
Confidence 444444678899999988889999999999987
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.14 E-value=3.8 Score=44.58 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=106.4
Q ss_pred HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHH
Q 017926 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (363)
Q Consensus 112 ~r~~~Lkeal~~l~-~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~I 190 (363)
+|+.-+|.++..|+ |+|-..+-.+-++-.... +.+.|.-.-. ++-+.-..+-....+.+..++.-..++++.|
T Consensus 29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~--dlelKKlvyL----Yl~nYa~~~P~~a~~avnt~~kD~~d~np~i 102 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTR--DLELKKLVYL----YLMNYAKGKPDLAILAVNTFLKDCEDPNPLI 102 (734)
T ss_pred hHHHHHHHHHhcCccCcchHhhhHHHHhhcccC--CchHHHHHHH----HHHHhhccCchHHHhhhhhhhccCCCCCHHH
Confidence 68888899999886 444333333322222222 2343332222 2223344444555667777777778899999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~ 270 (363)
|..|...+|.+-- ++..++ ...+|.+.++++.+.+|..|...+..+=+- ..+.+.+.|-++.|..++.+.
T Consensus 103 R~lAlrtm~~l~v--~~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 103 RALALRTMGCLRV--DKITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDS 172 (734)
T ss_pred HHHHhhceeeEee--hHHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCC
Confidence 9999888887653 334444 467899999999988998888888877432 346777888899999999965
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 017926 271 SFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~~ 289 (363)
++-+-..|+.++..+..
T Consensus 173 --~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 173 --NPMVVANALAALSEIHE 189 (734)
T ss_pred --CchHHHHHHHHHHHHHH
Confidence 34467778888887764
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.36 Score=51.56 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=65.3
Q ss_pred hhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 167 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 167 An~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
+.+++..|.-..++.-|+.+--+||..|...++.++++.|..... ++..|++|++++-..||.+|+++|-.|..|
T Consensus 366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 557777888888898888888999999999999999999987765 467899999998888999999999888765
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.88 Score=49.47 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHH-HHHhcCCCCHHHHHHHHHHHHHHhccCh-
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSV-LVGQLNHPDTDIRKISAWILGKASQNNP- 206 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~-Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp- 206 (363)
-+.+.-..+.-|+|+ +.+.|..|++-+..+.--+.+.....-+|-+.. |.+.|...++++.-....+|..++.-.-
T Consensus 797 lpqi~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred hHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence 345556667777776 567888888888877666666655555555544 4578888999998877777777764220
Q ss_pred -HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 017926 207 -LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (363)
Q Consensus 207 -~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~--~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~l 283 (363)
+.+-= -.|.+|.|.-+|++....++...+--++.|+-..+.-. ....+ .-=-|+++|++. .-.+|+.|...
T Consensus 875 ~km~pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkah--kK~iRRaa~nT 948 (1172)
T KOG0213|consen 875 TKMTPP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAH--KKEIRRAAVNT 948 (1172)
T ss_pred cccCCC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHH--HHHHHHHHHhh
Confidence 00100 13789999999999888899999988888887665521 11111 111245555554 33578889888
Q ss_pred HHHHhh
Q 017926 284 VGDLAK 289 (363)
Q Consensus 284 L~~L~~ 289 (363)
+.+++.
T Consensus 949 fG~Iak 954 (1172)
T KOG0213|consen 949 FGYIAK 954 (1172)
T ss_pred hhHHHH
Confidence 888875
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=91.02 E-value=3.9 Score=35.06 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=57.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCCCH-H-HHHHHHHHHHHHhcCC
Q 017926 177 SVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFV-E-EAVKALYTVSSLIRNN 247 (363)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~~~-~-v~~kAL~ALSsLiR~~ 247 (363)
..|-.-|++.++.++..|..+|-.+++|. +..+..+...+.+..|.+++..... . |+.|++..+-+-...+
T Consensus 40 r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 40 RLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999999994 6688888888999999999987542 3 8888888777655443
|
Unpublished observations. Domain of unknown function. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=90.91 E-value=20 Score=36.44 Aligned_cols=186 Identities=18% Similarity=0.196 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhc-CCCCHHHHHH----HHHHH-HH
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKI----SAWIL-GK 200 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL-~s~~~~Ir~~----Aa~~L-gt 200 (363)
|+..+++.+.+....+... +..+..++..+.-++........+.. -+..+..-+ ...++..+.. .+|+. |-
T Consensus 185 ~~~~~ll~~l~~~~~~~~~-~~~~~~~~~~la~LvNK~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 185 PDLEELLQSLLNLALSSED-EFSRLAALQLLASLVNKWPDDDDLDE--FLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred cCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCChhhHHH--HHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 4444566677776655443 66777788877777766433332221 122222222 2223333333 33444 44
Q ss_pred HhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc--------cHHHHHhcC----cHHHHHHhhc
Q 017926 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--------GQEMFYVEA----GDLMLQDILG 268 (363)
Q Consensus 201 ~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~--------a~~~f~~~g----G~~~L~~lL~ 268 (363)
+..++|...+. +..|+++|.+ +++...|..++.-++.+.+. ..+.+++.- -++.|++..+
T Consensus 262 v~R~~~~~~~~------~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 262 VMRGHPLATEL------LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHcCCchHHHH------HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 55677765543 6789999988 44566666777777666322 233333332 3455666555
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH--hCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 269 s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~--~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.. +...|..-..+++++..+ -| .+.+. -..++|.|++.|..+|.+++..++.+|.
T Consensus 334 ~~--~~~~k~~yL~ALs~ll~~-----vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~ 390 (415)
T PF12460_consen 334 EA--DDEIKSNYLTALSHLLKN-----VP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLK 390 (415)
T ss_pred hc--ChhhHHHHHHHHHHHHhh-----CC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 54 223566777788888853 22 11222 1368899999999999999999999977
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=90.41 E-value=4.6 Score=39.18 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=78.6
Q ss_pred CCHHHHH-HhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHH
Q 017926 174 GGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 174 Ggl~~Li-~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~ 252 (363)
+.+..|| +.++++++.||..|..|+|-++-=+.+... ..++.+...++.++..++..|+.+|.-++.-|...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~-- 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGID-- 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch--
Confidence 4455555 788999999999999999999975553333 24788888887778899999999999887765432
Q ss_pred HHHhc----------CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 253 MFYVE----------AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 253 ~f~~~----------gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.|-.. .-..++...+.+. +..+|.-|+--++-|..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLL 143 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHh
Confidence 22222 2356777777776 55688888887777764
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=90.08 E-value=2 Score=37.48 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHH
Q 017926 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (363)
Q Consensus 234 ~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv 313 (363)
-..+-.|+-+|+..+.+. ..++..|..=|+++ +..++..|+.++..++. +.+..+...+.+.+++..|+
T Consensus 22 w~~ileicD~In~~~~~~-----k~a~ral~krl~~~--n~~vql~AL~LLe~~vk----NCG~~fh~evas~~fl~~l~ 90 (142)
T cd03569 22 LASILEICDMIRSKDVQP-----KYAMRALKKRLLSK--NPNVQLYALLLLESCVK----NCGTHFHDEVASREFMDELK 90 (142)
T ss_pred HHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHH
Confidence 355666788887654332 24566777778876 57789999999999987 35677788888999999999
Q ss_pred HhccC-CChhHHHHHHHHHHhhcccc
Q 017926 314 DLTAS-ADLDLQEKVFLEHVFCGLVF 338 (363)
Q Consensus 314 ~lL~~-~d~~lqE~al~aL~~~~~~~ 338 (363)
.++.. .+..++++++..+..++...
T Consensus 91 ~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 91 DLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 99984 58899999999998666533
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.9 Score=37.24 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=56.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHHhc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VE---EAVKALYTVSSLIR 245 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~~-~~---v~~kAL~ALSsLiR 245 (363)
+..|-.-|++.++.++..|..+|-.+++|. +..+..+.....+..|.+++.+.. .. |+.|++--|..-..
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 445567788899999999999999999997 788888888889999999998654 33 78888776665443
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.91 Score=48.65 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=63.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
|+-..++.=|.++--+||..|+++++++..+.|.-. .-.+..|+..+.+. ..-+|.||.+.+..++.+.
T Consensus 373 GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE--~~~VRL~ai~aL~~Is~~l---- 441 (823)
T KOG2259|consen 373 GACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDE--IEVVRLKAIFALTMISVHL---- 441 (823)
T ss_pred cccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHh----
Confidence 333334433433334689999999999998876532 24577899999987 4568999999999998531
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+++..++.+.+.|...+++++|....-|.
T Consensus 442 -------~i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 442 -------AIREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred -------eecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 122334455555555555555555544444
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.96 Score=39.94 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=75.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccChHHHHHHH-HcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcC
Q 017926 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (363)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~l-e~G~lp~Ll~LL~--s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~g 258 (363)
++...+.+-...+..+++.+-+--|.+-..++ ..|.++.++.+.. +.+..++..++-+|+.-+-+ .....|+..+
T Consensus 51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN 128 (157)
T ss_dssp HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence 33444444667889999999999898887776 5699999999999 66778899999999988754 5577888889
Q ss_pred cHHHHHHhhcCCCccHH-HHHHHHHHH
Q 017926 259 GDLMLQDILGNSSFEIR-LHRKAVSLV 284 (363)
Q Consensus 259 G~~~L~~lL~s~~~~~k-lr~kA~~lL 284 (363)
|++.|...++... +.. +|..|+-.|
T Consensus 129 ~~~~L~~~~~~~~-~~~~ir~~A~v~L 154 (157)
T PF11701_consen 129 YVSWLKELYKNSK-DDSEIRVLAAVGL 154 (157)
T ss_dssp CHHHHHHHTTTCC--HH-CHHHHHHHH
T ss_pred HHHHHHHHHcccc-chHHHHHHHHHHH
Confidence 9999999996543 444 666665544
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=89.76 E-value=8.9 Score=40.49 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=94.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----cChHHH
Q 017926 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----NNPLVQ 209 (363)
Q Consensus 138 ~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~~Lgt~aq----NNp~~Q 209 (363)
+.+.+...+..+...++-.+...+...+ ...+..+..++++ .++.++..|.-.+|+++. +++.++
T Consensus 364 ~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 364 QWIKNKKITPLEAAQLLAVLPHTARYPT-------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhhhcCC-------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3444555555555555555555443322 1234445566654 366788888888887764 344443
Q ss_pred HHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhc-CCCccHHHHHHHHHHH
Q 017926 210 KQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-NSSFEIRLHRKAVSLV 284 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s----~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~-s~~~~~klr~kA~~lL 284 (363)
.. +....++.|.+.|.. .+...+.-+|-||+|+ +++... ..|..++. ....+..+|.-|++++
T Consensus 437 ~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~i---------~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 437 DF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSSI---------KVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred hh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhHH---------HHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 22 223467777776653 2334466788888887 445433 33444443 3334678999999999
Q ss_pred HHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHH
Q 017926 285 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHV 332 (363)
Q Consensus 285 ~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~ 332 (363)
..++.. .+. .+-+.+..+..+. +.++|-.|..+|.
T Consensus 505 r~~a~~-----~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 505 RNLAKR-----DPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHh-----Cch--------HHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 988742 211 2334455555543 7888888888777
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=89.64 E-value=4.7 Score=40.20 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=128.2
Q ss_pred CCHHHHHHHHHHHHHcccC-CCchh--hH-HhcCCHHHHHHh-c-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcH
Q 017926 145 LSLEDSQRALQELLILVEP-IDNAN--DL-SKLGGLSVLVGQ-L-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~-iDnAn--~l-~~lGgl~~Li~l-L-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~l 218 (363)
.+.|.|..+...+..++.. ++... .. .-..-.|-++.. + ..+++++-..+..+|..++.. +.+-+.++....+
T Consensus 88 L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~-e~l~~~iL~~~~f 166 (335)
T PF08569_consen 88 LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH-ESLAKIILYSECF 166 (335)
T ss_dssp S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS-HHHHHHHHTSGGG
T ss_pred CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh-HHHHHHHhCcHHH
Confidence 3567777776666665554 33311 10 111222333332 2 235788888999999999974 6677788889999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc---HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG---DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 219 p~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG---~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
..+.+.+..++-++...|...+-.+...|+.....|+..+= +.....+|.+++ --.|+.++-||+.|..
T Consensus 167 ~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N--YvtkrqslkLL~elll------ 238 (335)
T PF08569_consen 167 WKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN--YVTKRQSLKLLGELLL------ 238 (335)
T ss_dssp GGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS--HHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC--eEeehhhHHHHHHHHH------
Confidence 99999999999999999999999988888888888887652 467888888874 4579999999999996
Q ss_pred CCCcch----hHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 296 HKVEPP----LFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 296 ~~~~~~----~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
+.++.. .+-+..-++.++.+|++....+|-.|-+......+
T Consensus 239 dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 239 DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 333332 33456778999999999999999888888764444
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.5 Score=35.41 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=56.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
+...+..|+++.+.||.++...|+.+...+. ....-..+.+..++..|+++++-+--.|+.+++.++.-+|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3455677889999999999999999999776 11112246778888899988887888899999999887765
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.30 E-value=21 Score=34.11 Aligned_cols=175 Identities=17% Similarity=0.119 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcccC-CCchhhHHhcCCHHHHH--------HhcCC----CCHHHHHHHHHHHHHHhccChHHHHHHHHcC
Q 017926 150 SQRALQELLILVEP-IDNANDLSKLGGLSVLV--------GQLNH----PDTDIRKISAWILGKASQNNPLVQKQVLELG 216 (363)
Q Consensus 150 k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li--------~lL~s----~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G 216 (363)
|+.||++|-+--++ .|.|-.+-...|++..+ .+|+- +...=|..-+-.|-.+...+|+.+..|++..
T Consensus 62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ah 141 (315)
T COG5209 62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAH 141 (315)
T ss_pred HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeecc
Confidence 44466666665555 46777776666665432 23331 2344455555555556667999999999875
Q ss_pred c---HHHHHHhhcCCCH--HHHHHHHHHHHHHhcCCcccHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 217 A---LSKLMKMVKSSFV--EEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 217 ~---lp~Ll~LL~s~~~--~v~~kAL~ALSsLiR~~~~a~~~f~-~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
. +-+.+...++.++ ..|..++..|+++++|..+-...|. ....++++.+++... +.--|.-|+|.+.-+.-
T Consensus 142 iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g--SElSktvaifI~qkil~- 218 (315)
T COG5209 142 IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG--SELSKTVAIFIFQKILG- 218 (315)
T ss_pred cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh--hHHHHHHHHHHHHHHhc-
Confidence 3 2233333333332 3588999999999999766555555 467899999999876 34567778888776652
Q ss_pred hhhcCCCCcchh-------HH-hCCcHHHHHHhcc-CCChhHHHHHHHHHH
Q 017926 291 QLENMHKVEPPL-------FR-DRFFLKSVVDLTA-SADLDLQEKVFLEHV 332 (363)
Q Consensus 291 ~~~~~~~~~~~~-------l~-~~g~v~~Lv~lL~-~~d~~lqE~al~aL~ 332 (363)
++.-.+. |. -..++..++..+- .+.-.+..+++++-.
T Consensus 219 -----dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYl 264 (315)
T COG5209 219 -----DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYL 264 (315)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHhe
Confidence 3222211 11 1234455554442 335566667766644
|
|
| >PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.1 Score=41.11 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh
Q 017926 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (363)
Q Consensus 188 ~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL 267 (363)
..+-..+...|...+.+|++.|..+.++ ++.++..+.......-.-+...+.+++++|+.....+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4677899999999999999999999876 44344444433322234567778889999999888887766 88899988
Q ss_pred cCCCccHHHHHHHHHHHHHHhhh
Q 017926 268 GNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 268 ~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
...+ -+.+-+-++..||..
T Consensus 152 ~~~g----r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHG----RQPRYLDFLSSLCVC 170 (207)
T ss_dssp -----------------------
T ss_pred HHcC----CChHHHHHHhhhccc
Confidence 8742 234677788888864
|
They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.97 E-value=5 Score=39.92 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=98.3
Q ss_pred CchhhHHhc-CCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChH-HHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHH
Q 017926 165 DNANDLSKL-GGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS--FVEEAVKALYT 239 (363)
Q Consensus 165 DnAn~l~~l-Ggl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~-~Q~~~le~G~lp~Ll~LL~s~--~~~v~~kAL~A 239 (363)
..|.++.++ ..+.-++.+.+. ....|-..++.++.+++...|+ .-...+-.|-+.+-+++|... +++.-+.=+.-
T Consensus 225 ~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~ 304 (432)
T COG5231 225 ECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIER 304 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHH
Confidence 345555554 344455566554 3566777888888888874432 222233345455666666542 12111111111
Q ss_pred HH----------------------HHhcCCcc---------cHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 240 VS----------------------SLIRNNLA---------GQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 240 LS----------------------sLiR~~~~---------a~~~f~~~--gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
|- .+..-.|+ +.++|.+- .-+..|.+++++.+.+.-+ .-|+.=|..
T Consensus 305 i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i-~vAc~Di~~ 383 (432)
T COG5231 305 IRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWI-CVACSDIFQ 383 (432)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceE-eeeHhhHHH
Confidence 11 12211222 45666653 4678888999887544222 235555666
Q ss_pred HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+.. ..|+.+..+...|+=..++++++++|++++=.|+.|+-
T Consensus 384 ~Vr-----~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q 424 (432)
T COG5231 384 LVR-----ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQ 424 (432)
T ss_pred HHH-----hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence 664 57888999999999999999999999999999999977
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=88.92 E-value=4.5 Score=41.00 Aligned_cols=122 Identities=12% Similarity=0.044 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhc---cChHHHHHHHH-cCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHH
Q 017926 192 KISAWILGKASQ---NNPLVQKQVLE-LGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 264 (363)
Q Consensus 192 ~~Aa~~Lgt~aq---NNp~~Q~~~le-~G~lp~Ll~LL~s~~---~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~ 264 (363)
+.-...|..+.+ ++...-..+++ ...+..|-.++++.. ..+-.-|+..++.+|.+.|.....+.+.|-++.++
T Consensus 78 K~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 78 KSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 344455666666 34444444555 344445556666654 35677899999999999898888899999999888
Q ss_pred Hhhc-CC-CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC
Q 017926 265 DILG-NS-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (363)
Q Consensus 265 ~lL~-s~-~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 319 (363)
..+. .. -.+..+-.-.-.++..||- +....+.+++.+.++.+.+++.+.
T Consensus 158 ~~i~~~~i~~s~e~l~~lP~~l~AicL------N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 158 DAITAKGILPSSEVLTSLPNVLSAICL------NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHhccCCCCcHHHHHHHHHHHhHHhc------CHHHHHHHHhcChHHHHHHHhCCH
Confidence 8887 32 1234455566677888884 556778888888888888887765
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=88.88 E-value=3.5 Score=37.56 Aligned_cols=146 Identities=12% Similarity=-0.001 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhcc-ChHHH----HHHH------HcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh
Q 017926 189 DIRKISAWILGKASQN-NPLVQ----KQVL------ELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqN-Np~~Q----~~~l------e~G~lp~Ll~-LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~ 256 (363)
.||..|..+|.++++. .++.= -.++ ..+.-+.|+. ++.+++..+|..|+.+|+.|+.+..+....-.+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999998 43211 0111 1223444554 444556789999999999999886443322222
Q ss_pred cC----c---------------HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc
Q 017926 257 EA----G---------------DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (363)
Q Consensus 257 ~g----G---------------~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (363)
.. . -..|...|+.++ +..+.......+..|+..- ........+. ..++..+..++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~t---PY~rL~~~ll-~~~v~~v~~~l~ 155 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQAT---PYHRLPPGLL-TEVVTQVRPLLR 155 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccC---ChhhcCHhHH-HHHHHHHHHHHh
Confidence 22 1 124555566653 3345566677777776421 1111111111 123344455566
Q ss_pred CCChhHHHHHHHHHHhhccccc
Q 017926 318 SADLDLQEKVFLEHVFCGLVFC 339 (363)
Q Consensus 318 ~~d~~lqE~al~aL~~~~~~~~ 339 (363)
+.|++++..++.++.......+
T Consensus 156 ~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 156 HRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred cCCCcHHHHHHHHHHHHHcCCC
Confidence 7899999999999884444433
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.86 E-value=4.4 Score=46.03 Aligned_cols=134 Identities=9% Similarity=-0.034 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHc----CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHH
Q 017926 189 DIRKISAWILGKASQNNPLVQKQVLEL----GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~----G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L 263 (363)
+=...+..+|.++..-||.....|-.. |.++.+..++.... ..++.-|+..++-+ ..|.+........|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLA-TANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHH-hcccHHHHHHHhhhHHHHH
Confidence 344688999999999999766655432 77888888887654 45677777777655 4567888889999999999
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHH
Q 017926 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 264 ~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
..+|.+- +..|..++..++.|++ .++......++|.+..+.+++... +++.+.+++.-+.
T Consensus 1819 L~lLHS~---PS~R~~vL~vLYAL~S------~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLla 1879 (2235)
T KOG1789|consen 1819 LTLLHSQ---PSMRARVLDVLYALSS------NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLA 1879 (2235)
T ss_pred HHHHhcC---hHHHHHHHHHHHHHhc------CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHH
Confidence 9999985 3478999999999985 556666667889999999999876 5556666665554
|
|
| >PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region [] | Back alignment and domain information |
|---|
Probab=88.47 E-value=12 Score=36.99 Aligned_cols=148 Identities=16% Similarity=0.064 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHHhccChHHHHHHHHc-------C----cHHHHHHhhcCCC-----HHHHH-HHHHHHHHHhcCCc
Q 017926 186 PDTDIRKISAWILGKASQNNPLVQKQVLEL-------G----ALSKLMKMVKSSF-----VEEAV-KALYTVSSLIRNNL 248 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-------G----~lp~Ll~LL~s~~-----~~v~~-kAL~ALSsLiR~~~ 248 (363)
..-++|..|+.|+-.-..+|+..|..|++. + ....|+.-|-+.+ +..+. .|...++.++++++
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 367899999999999999999999999874 1 1223554444221 23343 78889999999999
Q ss_pred ccHHHHHhc------Cc------HHHHHHhhcCC---CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhC-CcHHHH
Q 017926 249 AGQEMFYVE------AG------DLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSV 312 (363)
Q Consensus 249 ~a~~~f~~~------gG------~~~L~~lL~s~---~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~-g~v~~L 312 (363)
.+.+...+. .| ++.+..+|... +.+.+++.--+.||..-+. .++.....|.++ .-++.|
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~-----e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLF-----ECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHT-----T-HHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHh-----CCHHHHHHHHcCcchHHHH
Confidence 887776653 12 34455555441 2356666555555555553 455555666554 689999
Q ss_pred HHhcc-CCChhHHHHHHHHHHhhcccc
Q 017926 313 VDLTA-SADLDLQEKVFLEHVFCGLVF 338 (363)
Q Consensus 313 v~lL~-~~d~~lqE~al~aL~~~~~~~ 338 (363)
++... .++.+..-+.|-|+.+-.+++
T Consensus 205 i~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 205 IEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 99754 446666667777776444443
|
p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A. |
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.43 E-value=23 Score=36.71 Aligned_cols=177 Identities=16% Similarity=0.083 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-----C----hHHHHHHHHcCcHH
Q 017926 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-----N----PLVQKQVLELGALS 219 (363)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN-----N----p~~Q~~~le~G~lp 219 (363)
+....++.+--+....|.-..|..++|++.|+.+|.|+|.+|-......+-.++-. + ...-+..++.++++
T Consensus 100 dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla 179 (536)
T KOG2734|consen 100 DLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA 179 (536)
T ss_pred cHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH
Confidence 34556777777778889999999999999999999999999999999988888742 1 13445667889999
Q ss_pred HHHHhhcCCCHHH------HHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhh
Q 017926 220 KLMKMVKSSFVEE------AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (363)
Q Consensus 220 ~Ll~LL~s~~~~v------~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~ 293 (363)
.|++-+.-=+.++ ...++.-+-+++.-.+.......+.|-+..|..-+.....-..-+.-+.-+++-+..
T Consensus 180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq---- 255 (536)
T KOG2734|consen 180 LLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ---- 255 (536)
T ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc----
Confidence 9999887432222 234555555665544555566666766677666343321111123334444444442
Q ss_pred cCCCCcchhHHhCCcHHHHHHhccC---C------ChhHHHHHHHH
Q 017926 294 NMHKVEPPLFRDRFFLKSVVDLTAS---A------DLDLQEKVFLE 330 (363)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~---~------d~~lqE~al~a 330 (363)
...+.+..+-.-..+..++.-+.. . ..+..|..-.+
T Consensus 256 -~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdc 300 (536)
T KOG2734|consen 256 -NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDC 300 (536)
T ss_pred -cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHH
Confidence 222355555566666666666641 1 23555666666
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=88.35 E-value=2 Score=37.59 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHH
Q 017926 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (363)
Q Consensus 235 kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~ 314 (363)
..+-.|+-+|+..+.+- -..+..|..=|.+. ++.++..|+.++-.++. |.+..+...+.+..++..|+.
T Consensus 19 ~~il~icD~I~~~~~~~-----k~a~ral~KRl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evask~Fl~eL~k 87 (144)
T cd03568 19 GLILDVCDKVKSDENGA-----KDCLKAIMKRLNHK--DPNVQLRALTLLDACAE----NCGKRFHQEVASRDFTQELKK 87 (144)
T ss_pred HHHHHHHHHHhcCCccH-----HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHHH
Confidence 34455666666543222 23455666667776 56789999999999987 467778888889999999999
Q ss_pred hccC-CChhHHHHHHHHHHhhcccccCchh--hhhHHHHHHhhhhcccc
Q 017926 315 LTAS-ADLDLQEKVFLEHVFCGLVFCTCPC--IVRGAVIVAEYIYINFS 360 (363)
Q Consensus 315 lL~~-~d~~lqE~al~aL~~~~~~~~~~~~--~~r~~~l~~~~~~~~~~ 360 (363)
++.. .+..++++++..+..++......++ .+++.--.....|+.|.
T Consensus 88 l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G~~f~ 136 (144)
T cd03568 88 LINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEGPDLV 136 (144)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcCCCCC
Confidence 9998 6999999999999877654443332 23333334445566654
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.12 E-value=1.8 Score=46.28 Aligned_cols=153 Identities=13% Similarity=0.114 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhccChHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~-~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
.++...++.|+++ +++.|+.|++-...++--+.+...+..+.-+. +|.+.|...++++.-....+|+.+..-.....
T Consensus 604 ~ivStiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 604 MIVSTILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 4556677777765 56778888877766655444433333222222 34567778899998888888877775322110
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~--~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L 287 (363)
-+-=-.|.+|.|.-+|.+....+.+..+--++-|+.+.|... ....+ .---|+..|++- +-.+|+.|.-.+.++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR--IcfeLvd~Lks~--nKeiRR~A~~tfG~I 757 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR--ICFELVDSLKSW--NKEIRRNATETFGCI 757 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHh--hHHHHHhhhhhhhhH
Confidence 000124789999999999888888888888888888766521 11111 111245556655 345788898888888
Q ss_pred hh
Q 017926 288 AK 289 (363)
Q Consensus 288 ~~ 289 (363)
..
T Consensus 758 s~ 759 (975)
T COG5181 758 SR 759 (975)
T ss_pred Hh
Confidence 75
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.12 E-value=26 Score=33.79 Aligned_cols=177 Identities=18% Similarity=0.103 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHcccCC-CchhhHHhcCCHH-HHHH-h------cC----CCCHHHHHHHHHHHHHHhccChHHHHHHHH
Q 017926 148 EDSQRALQELLILVEPI-DNANDLSKLGGLS-VLVG-Q------LN----HPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~-~Li~-l------L~----s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le 214 (363)
+.++.||.+|..--+.. |.|.-+-+.-|.+ .+++ . |+ ++...-|..-+-+|-.++..+|+.+..|++
T Consensus 39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~ 118 (293)
T KOG3036|consen 39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR 118 (293)
T ss_pred chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence 55777888887766653 6676655543333 3332 1 21 234556766677777777789999999999
Q ss_pred cCcHHHHHHhhcCC----C-HHHHHHHHHHHHHHhcCCcccHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 215 LGALSKLMKMVKSS----F-VEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 215 ~G~lp~Ll~LL~s~----~-~~v~~kAL~ALSsLiR~~~~a~~~f~~-~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
...=-.|-.+|... + +-.|..++.-|++++++.......|.- .+.++..++.+... +.--|.-|+|.+.-+.
T Consensus 119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G--SelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG--SELSKTVATFILQKIL 196 (293)
T ss_pred ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc--cHHHHHHHHHHHHHHh
Confidence 86433334444432 2 246899999999999997766666664 57889999999887 3446777888877766
Q ss_pred hhhhhcCCCCc-------chhHH-hCCcHHHHHHhcc-CCChhHHHHHHHHHH
Q 017926 289 KCQLENMHKVE-------PPLFR-DRFFLKSVVDLTA-SADLDLQEKVFLEHV 332 (363)
Q Consensus 289 ~~~~~~~~~~~-------~~~l~-~~g~v~~Lv~lL~-~~d~~lqE~al~aL~ 332 (363)
. ++.- .++|. -..++..++..|. .++..+..++.++..
T Consensus 197 l------dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYl 243 (293)
T KOG3036|consen 197 L------DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYL 243 (293)
T ss_pred h------ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3 2221 12221 1234444444443 457788888888766
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.80 E-value=6.3 Score=45.12 Aligned_cols=133 Identities=19% Similarity=0.123 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcccC--CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 147 LEDSQRALQELLILVEP--IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~--iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
+=.|..-+++|..||.- ..-+||+. +..|+.+|+..+..+|..=..-|.-++ -.++..-++.+.+|.|.+=
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~ksND~i----LshLiTfLNDkDw~LR~aFfdsI~gvs---i~VG~rs~seyllPLl~Q~ 664 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEKSNDVI----LSHLITFLNDKDWRLRGAFFDSIVGVS---IFVGWRSVSEYLLPLLQQG 664 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccch----HHHHHHHhcCccHHHHHHHHhhccceE---EEEeeeeHHHHHHHHHHHh
Confidence 45677778888887764 24566665 788999999999999865544444332 1234444577889999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
|.+..+.|.++||++|++||...---...+ ..-++....+|-++ +.-+|+-++..|.....+
T Consensus 665 ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hP--N~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 665 LTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHP--NLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred ccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCc--hHHHHHHHHHHHHHHHhh
Confidence 999888999999999999998643222222 23455666667777 677999999999888753
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.46 E-value=57 Score=37.58 Aligned_cols=170 Identities=14% Similarity=0.127 Sum_probs=104.5
Q ss_pred HHHHhHHHHHHHH-HHcCC--CCHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcccCCC--chhhHHhcCCHHHHH
Q 017926 109 ELKKRQMEIKELM-EKLKT--PSDAQLIQIAIDDLNNST---LSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLV 180 (363)
Q Consensus 109 ~l~~r~~~Lkeal-~~l~~--~~d~~lmk~al~~L~~~~---~s~e~k~~AL~~L~~Lve~iD--nAn~l~~lGgl~~Li 180 (363)
.+..|+.+|+-.. .-+.. .+.....+.++..+.... ........-|+.+.-++.-.+ +...+. .+.
T Consensus 586 ~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~------~v~ 659 (1176)
T KOG1248|consen 586 ILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF------TVD 659 (1176)
T ss_pred cHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH------Hhh
Confidence 3556888888776 33332 223445566555543221 111222333444444444333 222222 444
Q ss_pred Hhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 181 GQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 181 ~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
... ++.+..+|..+-.+|..+.+- |.++-.+.+. .....|.+-+++.+...+...+.+|+.|++.++.-...|+..
T Consensus 660 ~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k 738 (1176)
T KOG1248|consen 660 PEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK 738 (1176)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 444 567999999999999999987 6666554433 345556666666666789999999999999887444555555
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 258 gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
...++|+.. +.. +.+.|+.|.-+|..|+
T Consensus 739 ~I~EvIL~~-Ke~--n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 739 LIPEVILSL-KEV--NVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHHhc-ccc--cHHHHhhHHHHHHHHH
Confidence 555666655 443 5677888888888887
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.13 E-value=4.1 Score=40.20 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC--CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-
Q 017926 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN- 204 (363)
Q Consensus 128 ~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN- 204 (363)
++-..+++++..|.+.+ =+.++..|..+..|.+-. -..+.|++ .+..+++-+++....|-..||.+++.+.++
T Consensus 85 ~p~~al~~~l~~L~s~d--W~~~vdgLn~irrLs~fh~e~l~~~L~~--vii~vvkslKNlRS~VsraA~~t~~difs~l 160 (334)
T KOG2933|consen 85 DPEAALKQALKKLSSDD--WEDKVDGLNSIRRLSEFHPESLNPMLHE--VIIAVVKSLKNLRSAVSRAACMTLADIFSSL 160 (334)
T ss_pred cHHHHHHHHHHHhchHH--HHHHhhhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 33456888999887653 478888888888776643 22333433 466677888899999999999999999995
Q ss_pred ChHHHHHHHHcCcHHHHH-HhhcCC---CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 017926 205 NPLVQKQVLELGALSKLM-KMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (363)
Q Consensus 205 Np~~Q~~~le~G~lp~Ll-~LL~s~---~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA 280 (363)
|..+++ .+..++ .|+... +.-++..|--||-+++.+-.++. .+..|+.++++. ..+++.++
T Consensus 161 n~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~--n~r~r~~a 225 (334)
T KOG2933|consen 161 NNSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHS--NPRVRAKA 225 (334)
T ss_pred HHHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhh--chhhhhhh
Confidence 444444 223333 344332 34578888888888987644422 344566666655 45677777
Q ss_pred HHHHHHHh
Q 017926 281 VSLVGDLA 288 (363)
Q Consensus 281 ~~lL~~L~ 288 (363)
+..+.+..
T Consensus 226 ~~~~~~~v 233 (334)
T KOG2933|consen 226 ALCFSRCV 233 (334)
T ss_pred hccccccc
Confidence 76555443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=87.13 E-value=26 Score=34.44 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC---CchhhHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhc--
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI---DNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQ-- 203 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i---DnAn~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aq-- 203 (363)
+++....+.++... + +++..|+..+.-++=++ +.+..+.+ ...|+|.+.+.. ..+.+|..++.+||-++-
T Consensus 86 tL~~~~~k~lkkg~-~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 86 TLLDALLKSLKKGK-S-EEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHHhccCC-H-HHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 45666666676544 3 66777777777776664 46677666 356677777764 356788888878877643
Q ss_pred -cChHHHHHHHHcCcHHHHHH--hhcC----------CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC
Q 017926 204 -NNPLVQKQVLELGALSKLMK--MVKS----------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 204 -NNp~~Q~~~le~G~lp~Ll~--LL~s----------~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~ 270 (363)
+.+..-...+ ..+..+.. .++. ++..+...|+.+-+-|+..-++..-.-.-...++.|..+|.++
T Consensus 163 ~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~ 240 (309)
T PF05004_consen 163 GSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD 240 (309)
T ss_pred cCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 3332222111 12221111 1221 1235788999999988877665321111134689999999987
Q ss_pred CccHHHHHHHHHHHHHHh
Q 017926 271 SFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~ 288 (363)
+..||.-|.-.|.=|.
T Consensus 241 --d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 241 --DVDVRIAAGEAIALLY 256 (309)
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 6778888887776554
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=87.06 E-value=5.1 Score=42.57 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=87.4
Q ss_pred hcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhccChH---------
Q 017926 141 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPL--------- 207 (363)
Q Consensus 141 ~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~~Lgt~aqNNp~--------- 207 (363)
.+...+..+....+-.+...+...+ ...+..+..++++ .++.++..|.-.+|+++...-.
T Consensus 405 ~~~~~~~~ea~~~l~~l~~~~~~Pt-------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~ 477 (618)
T PF01347_consen 405 KSKKLTDDEAAQLLASLPFHVRRPT-------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCD 477 (618)
T ss_dssp HTT-S-HHHHHHHHHHHHHT------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT--------
T ss_pred HcCCCCHHHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccccc
Confidence 3445555555556666665552222 1123334445553 4677888888888887743111
Q ss_pred HHHHHHHcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC-CccHHHHHHHHH
Q 017926 208 VQKQVLELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-SFEIRLHRKAVS 282 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~----s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~-~~~~klr~kA~~ 282 (363)
.....+....++.|.+.+. ..+...+..+|.||+|+ +++. .++.|..++.+. ..+..+|..|++
T Consensus 478 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~~Ai~ 546 (618)
T PF01347_consen 478 PCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPE---------SIPVLLPYIEGKEEVPHFIRVAAIQ 546 (618)
T ss_dssp ---SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GG---------GHHHHHTTSTTSS-S-HHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCch---------hhHHHHhHhhhccccchHHHHHHHH
Confidence 1112233356777777776 23345678899999998 4443 455666666554 346678889999
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHH
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHV 332 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~ 332 (363)
++..+... . ...+.+.+..++.+. +.++|-.|...|.
T Consensus 547 Alr~~~~~-----~--------~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 547 ALRRLAKH-----C--------PEKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp TTTTGGGT--------------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HHHHHhhc-----C--------cHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 98877642 1 112335556665543 7888888887776
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.92 E-value=16 Score=40.69 Aligned_cols=189 Identities=17% Similarity=0.108 Sum_probs=104.7
Q ss_pred HHHHHHhhcCC-CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHH------------HHHH-hcCC---CCHHHHHHHHH
Q 017926 134 QIAIDDLNNST-LSLEDSQRALQELLILVEPIDNANDLSKLGGLS------------VLVG-QLNH---PDTDIRKISAW 196 (363)
Q Consensus 134 k~al~~L~~~~-~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~------------~Li~-lL~s---~~~~Ir~~Aa~ 196 (363)
.+....+++.. .+...-+..|+...+.+++.|.=--+..+.|+. -+.+ +.+. ..++.|...-.
T Consensus 749 ~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGE 828 (982)
T KOG4653|consen 749 QMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGE 828 (982)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHH
Confidence 33444444332 234445566777777777776543333334333 3333 2221 12456666668
Q ss_pred HHHHHhc-cChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc-HHHHHhcCcHHHHHHhhcCCCccH
Q 017926 197 ILGKASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGNSSFEI 274 (363)
Q Consensus 197 ~Lgt~aq-NNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a-~~~f~~~gG~~~L~~lL~s~~~~~ 274 (363)
+|+..+| -++-++.+.- -.+...++.+.+++...|..++.+++.+++-..-. .+.|. .-+..++.+.+.+. ..
T Consensus 829 ai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l~~~d~-s~ 903 (982)
T KOG4653|consen 829 AILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EVLQLILSLETTDG-SV 903 (982)
T ss_pred HHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHccCC-ch
Confidence 8888887 3555555432 45566777777666677999999999888743322 22222 23445555555553 57
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCcchhHH--hCCcHHHHHHhccCC-ChhHHHHHHHHH
Q 017926 275 RLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASA-DLDLQEKVFLEH 331 (363)
Q Consensus 275 klr~kA~~lL~~L~~~~~~~~~~~~~~~l~--~~g~v~~Lv~lL~~~-d~~lqE~al~aL 331 (363)
-+|+.|+.++..+... ...+..+.+. -....+.+....+.. |..++-++-.|+
T Consensus 904 ~vRRaAv~li~~lL~~----tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 904 LVRRAAVHLLAELLNG----TGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhHHHHHHHHHHHHhc----cchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 7999999999999852 2333333332 223334444444544 444555554443
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.77 E-value=17 Score=37.98 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=73.7
Q ss_pred hhHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHH
Q 017926 168 NDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSS 242 (363)
Q Consensus 168 n~l~~lGgl~~Li~lL----~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll-~LL~s~~~~v~~kAL~ALSs 242 (363)
+.+-+.|.+.-++..| .+++..+|..|+.+||+.+..-|.--..-.. -.+..++ .|.+..+.+|.-.++.+|-.
T Consensus 248 ~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 248 KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTM 326 (533)
T ss_pred ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3344677777665544 3578899999999999999885532222111 2233333 44455556776666666655
Q ss_pred HhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 243 LiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
++.--..-.-.++=.+..-.+..++.+. +.++|..|.+++..|+..
T Consensus 327 v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 327 VLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHH
Confidence 5432111122333345556677777776 557899999999999864
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=86.60 E-value=6.8 Score=34.07 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHH
Q 017926 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (363)
Q Consensus 234 ~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv 313 (363)
-..+-.|+-+|+..+.+. ..++..|..-|+++ +..++..|+.++-.+.. |....+...+.+.+++..|+
T Consensus 19 w~~ileicD~In~~~~~~-----k~a~rai~krl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 19 WEAIQAFCEQINKEPEGP-----QLAVRLLAHKIQSP--QEKEALQALTVLEACMK----NCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred HHHHHHHHHHHHcCCccH-----HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHHhHHHHHHHH
Confidence 345666777776654332 23566777778877 56789999999999987 46778888888999999999
Q ss_pred HhccC------CChhHHHHHHHHHHhhcccccCch
Q 017926 314 DLTAS------ADLDLQEKVFLEHVFCGLVFCTCP 342 (363)
Q Consensus 314 ~lL~~------~d~~lqE~al~aL~~~~~~~~~~~ 342 (363)
.++.. .+..++++++..+..++.-.+.+|
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p 122 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEP 122 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 99963 478999999999987765444333
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.22 E-value=43 Score=36.02 Aligned_cols=193 Identities=11% Similarity=0.041 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcC-C--HHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLG-G--LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lG-g--l~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~L 221 (363)
...-|..++..+.+.++..+. .++..+- . +.++..-++ .++..+|-.|..+|..-. ..+|..|-.++-...+
T Consensus 147 p~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl---~fv~~nf~~E~erNy~ 222 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL---MFVQGNFCYEEERNYF 222 (858)
T ss_pred chHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH---HHHHHhhcchhhhchh
Confidence 345688999999999999886 4555432 2 223333444 467889999999887632 2345545444333333
Q ss_pred H----HhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc-HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhh---
Q 017926 222 M----KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG-DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE--- 293 (363)
Q Consensus 222 l----~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG-~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~--- 293 (363)
+ ..-+.++.+++.+|..++.-|..=+-.-.+ ++-.+. .......+++. +.++...|+-.-+.+|.+.-+
T Consensus 223 mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~-~ymE~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~ 299 (858)
T COG5215 223 MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQ-SYMENALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEM 299 (858)
T ss_pred heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHH
Confidence 3 344456678999999999887754433334 443444 45667778887 567888888888888875310
Q ss_pred --cCCCCcc------hhHHhCCcHHHHHHhccC-------CChhHHHHHHHHHHhhcccccCchhhhhHH
Q 017926 294 --NMHKVEP------PLFRDRFFLKSVVDLTAS-------ADLDLQEKVFLEHVFCGLVFCTCPCIVRGA 348 (363)
Q Consensus 294 --~~~~~~~------~~l~~~g~v~~Lv~lL~~-------~d~~lqE~al~aL~~~~~~~~~~~~~~r~~ 348 (363)
..-++.. ..-.-..++|-|.++|.. +|.+....|..||- +.+..|+++.-..
T Consensus 300 e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLq---lfaq~~gd~i~~p 366 (858)
T COG5215 300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQ---LFAQLKGDKIMRP 366 (858)
T ss_pred HHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHH---HHHHHhhhHhHHH
Confidence 0001100 011112467888888875 24566677777777 6777788765544
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.06 E-value=2.4 Score=44.21 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=101.3
Q ss_pred HHHHHHHHHHcccCCCchhhHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc----c--ChHHHHHHHHcCcHHHHH
Q 017926 150 SQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQ----N--NPLVQKQVLELGALSKLM 222 (363)
Q Consensus 150 k~~AL~~L~~Lve~iDnAn~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq----N--Np~~Q~~~le~G~lp~Ll 222 (363)
+..|+..+.-+|-..-.+.+.. -......++..|.+..-..|+.|+|.+|++.. | ||.+|..=...-.+..++
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~ 487 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKML 487 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 4556666666665555444433 23455666677777788899999999999874 3 444444433333455666
Q ss_pred HhhcCC---CHHHHHHHHHHHHHHhcCCc----ccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 223 KMVKSS---FVEEAVKALYTVSSLIRNNL----AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 223 ~LL~s~---~~~v~~kAL~ALSsLiR~~~----~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
+..... ...|+.+|+.||+++..--. .+..... .+....+...--.+ ...++|-+++++++||..+
T Consensus 488 ~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn----- 560 (728)
T KOG4535|consen 488 RSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-EESIQALISTVLTE-AAMKVRWNACYAMGNLFKN----- 560 (728)
T ss_pred HHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-HHHHHhcccceecc-cccccchHHHHHHHHhhcC-----
Confidence 655432 34678889999988764211 1111111 12222222222122 2567999999999999963
Q ss_pred CCCcchhHHhCCcH----HHHHHhccC-CChhHHHHHHHHHH
Q 017926 296 HKVEPPLFRDRFFL----KSVVDLTAS-ADLDLQEKVFLEHV 332 (363)
Q Consensus 296 ~~~~~~~l~~~g~v----~~Lv~lL~~-~d~~lqE~al~aL~ 332 (363)
+.. .+.+..+. +.|..++.. .+-.+|..|+.+|.
T Consensus 561 -~a~--~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 561 -PAL--PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred -ccc--cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 222 12333333 445555554 37788888998877
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.04 E-value=31 Score=38.25 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s 227 (363)
-.|.+|+..+.-++-.-+++.+ -+|.+++...+.+.+||...---|-.-|.++|... .=-|..+=+-|++
T Consensus 50 ~~KleAmKRIia~iA~G~dvS~-----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~D 119 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKGKDVSL-----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKD 119 (968)
T ss_pred HHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcC
Confidence 3455666665555555444443 36778888888888888887766666666655321 1125566677888
Q ss_pred CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCC
Q 017926 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (363)
Q Consensus 228 ~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g 307 (363)
+++.+|.-||.++|+| |= +...-+ .+-.+.++..+. ...+|+.|+.+|--|-+ .+++....+
T Consensus 120 pN~LiRasALRvlSsI-Rv--p~IaPI----~llAIk~~~~D~--s~yVRk~AA~AIpKLYs-----Ld~e~k~qL---- 181 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSI-RV--PMIAPI----MLLAIKKAVTDP--SPYVRKTAAHAIPKLYS-----LDPEQKDQL---- 181 (968)
T ss_pred CcHHHHHHHHHHHHhc-ch--hhHHHH----HHHHHHHHhcCC--cHHHHHHHHHhhHHHhc-----CChhhHHHH----
Confidence 8888899999999997 31 211111 123444555554 67899999999998875 344444433
Q ss_pred cHHHHHHhccCCChhHHHHHHHHHHhhcccccCchhhh
Q 017926 308 FLKSVVDLTASADLDLQEKVFLEHVFCGLVFCTCPCIV 345 (363)
Q Consensus 308 ~v~~Lv~lL~~~d~~lqE~al~aL~~~~~~~~~~~~~~ 345 (363)
+..+-.+|...++-+.-.|+.|.. ..||+.+
T Consensus 182 -~e~I~~LLaD~splVvgsAv~AF~------evCPerl 212 (968)
T KOG1060|consen 182 -EEVIKKLLADRSPLVVGSAVMAFE------EVCPERL 212 (968)
T ss_pred -HHHHHHHhcCCCCcchhHHHHHHH------HhchhHH
Confidence 334455566667777766666644 6688743
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.59 E-value=14 Score=39.95 Aligned_cols=162 Identities=19% Similarity=0.192 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCCC--HHHHHH--HHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhc----CCHHHHHHhcCCC
Q 017926 115 MEIKELMEKLKTPS--DAQLIQ--IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL----GGLSVLVGQLNHP 186 (363)
Q Consensus 115 ~~Lkeal~~l~~~~--d~~lmk--~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~l----Ggl~~Li~lL~s~ 186 (363)
..+++++..++.-+ ..+... ++++++-+ .+++.+--|||.|..++-+.-....|+.. ..+..++..++ .
T Consensus 524 ~~~eeil~li~~s~~~~~e~~~~l~~l~~l~~--wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~ 600 (745)
T KOG0301|consen 524 NGLEEILSLIKNSSHYSSEVLQSLLALAILLQ--WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A 600 (745)
T ss_pred hhHHHHHHhhcCCCCccchhHHHHHHHHHHhc--CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c
Confidence 35566666654312 112222 45555543 36788899999999999887666666652 23344555555 5
Q ss_pred CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC----CCHHHH-HHH--HHHHHH-HhcCCcccHHHHHhcC
Q 017926 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS----SFVEEA-VKA--LYTVSS-LIRNNLAGQEMFYVEA 258 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s----~~~~v~-~kA--L~ALSs-LiR~~~~a~~~f~~~g 258 (363)
++..+..+++||+++..| |..++.+... +..++..+.. ++..++ .-| +...|- ++..+. +.+
T Consensus 601 ~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-------~~~ 670 (745)
T KOG0301|consen 601 DPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-------QLE 670 (745)
T ss_pred chhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-------ccc
Confidence 688899999999999976 8888877655 3333333221 122221 111 112332 222221 267
Q ss_pred cHHHHHHhhcC---CCccHHHHHHHHHHHHHHhh
Q 017926 259 GDLMLQDILGN---SSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 259 G~~~L~~lL~s---~~~~~klr~kA~~lL~~L~~ 289 (363)
|.+.+..++.. +..+..-.-+.+-+|.+|+.
T Consensus 671 ~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 671 GKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred hHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 77766666542 21233234456667777774
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.13 E-value=5.7 Score=45.29 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=94.6
Q ss_pred cCCHHHHH-HhcC----CCCHHHHHHHHHHHHHHhc-cChHHHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 017926 173 LGGLSVLV-GQLN----HPDTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIR 245 (363)
Q Consensus 173 lGgl~~Li-~lL~----s~~~~Ir~~Aa~~Lgt~aq-NNp~~Q~~~le~G~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR 245 (363)
+|-+.|++ ...+ .++|++|..|.-++|.+.- .+..| + --+|.|+.++. ++++-+|..++-|+|-+.-
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----e-s~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----E-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----H-HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 45566665 5553 3689999999999999874 22222 2 24899999998 4556678899999998766
Q ss_pred CCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHH
Q 017926 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 325 (363)
Q Consensus 246 ~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE 325 (363)
-+|.-.+.+- +.|-.-|++. +..+|+.|...+++|.. ...++-.|.+..++-+|..++..+.+
T Consensus 991 ~fpnlie~~T-----~~Ly~rL~D~--~~~vRkta~lvlshLIL----------ndmiKVKGql~eMA~cl~D~~~~Isd 1053 (1251)
T KOG0414|consen 991 RFPNLIEPWT-----EHLYRRLRDE--SPSVRKTALLVLSHLIL----------NDMIKVKGQLSEMALCLEDPNAEISD 1053 (1251)
T ss_pred hcccccchhh-----HHHHHHhcCc--cHHHHHHHHHHHHHHHH----------hhhhHhcccHHHHHHHhcCCcHHHHH
Confidence 6665443332 2344445665 56689999999999985 23556678999999999888888877
Q ss_pred HHH
Q 017926 326 KVF 328 (363)
Q Consensus 326 ~al 328 (363)
.|-
T Consensus 1054 lAk 1056 (1251)
T KOG0414|consen 1054 LAK 1056 (1251)
T ss_pred HHH
Confidence 665
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=84.97 E-value=14 Score=32.83 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=74.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc--CcHHHHHHhhcCCCH-HHHHHHHHHHHH---HhcCCcc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFV-EEAVKALYTVSS---LIRNNLA 249 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G~lp~Ll~LL~s~~~-~v~~kAL~ALSs---LiR~~~~ 249 (363)
+.-+..+|++.++.-|+.++..++..+++++ .+.+.++ -.+..|+++|+.+++ .+..-++.+++. .++++|.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4456689999999999999999999999874 2444444 468889999998653 455555555554 5667777
Q ss_pred cHHHHHhcCc---HHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 250 GQEMFYVEAG---DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 250 a~~~f~~~gG---~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
-.+++..-.. ++.++.+++. ......++.++..+..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence 6667665443 3444444443 2356678888888875
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=84.95 E-value=8 Score=42.95 Aligned_cols=133 Identities=19% Similarity=0.239 Sum_probs=89.8
Q ss_pred hhhHHhcCCHHHHHHhcCC-----CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc----CCC----HHHH
Q 017926 167 ANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSF----VEEA 233 (363)
Q Consensus 167 An~l~~lGgl~~Li~lL~s-----~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~----s~~----~~v~ 233 (363)
++.+.+.||+..++.+|.+ ...++-.....++..+++ -+.+++++++.|+++.|++.|. ... ..+.
T Consensus 110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 5667779999999999875 234566777888888886 4889999999999999998885 322 3555
Q ss_pred HHHHHHHHHHhcCCc----ccHHHHHhcCc--------HHHHHHhhcCC--CccHHHHHHHHHHHHHHhhhhhhcCCCCc
Q 017926 234 VKALYTVSSLIRNNL----AGQEMFYVEAG--------DLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVE 299 (363)
Q Consensus 234 ~kAL~ALSsLiR~~~----~a~~~f~~~gG--------~~~L~~lL~s~--~~~~klr~kA~~lL~~L~~~~~~~~~~~~ 299 (363)
.+.+.-+-.++..-. .....+....| +.++...+.++ ..+.++..-.+.+|-.|+. ++++.
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~-----G~~e~ 263 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTY-----GNEEK 263 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhc-----CCHHH
Confidence 666666655554311 11122233344 77788877765 2356777778888888885 45554
Q ss_pred chhHHh
Q 017926 300 PPLFRD 305 (363)
Q Consensus 300 ~~~l~~ 305 (363)
.+.+++
T Consensus 264 m~~Lv~ 269 (802)
T PF13764_consen 264 MDALVE 269 (802)
T ss_pred HHHHHH
Confidence 455444
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.69 E-value=12 Score=40.52 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=106.7
Q ss_pred HHHHHHHHHHcccCCC-chhhHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHH--HcCcHHHHHHhh
Q 017926 150 SQRALQELLILVEPID-NANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL--ELGALSKLMKMV 225 (363)
Q Consensus 150 k~~AL~~L~~Lve~iD-nAn~l~~-lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~l--e~G~lp~Ll~LL 225 (363)
.+.+||-+.-|++.+. ....+.. .|....++.|+..+-++||..|.-.||.++.-. -+.+. -...+|.|..-+
T Consensus 636 iI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c---~~~v~p~~~~fl~~lg~Nl 712 (885)
T KOG2023|consen 636 IIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC---FEHVIPNLADFLPILGANL 712 (885)
T ss_pred EEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---HHhccchHHHHHHHHhhcC
Confidence 3556776666766652 3444543 345556678999999999999999999998653 22221 124555555555
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
..+..++...|+|||+-|+-......+.++. ..+.-|..+++.++++..+-.+.+-.|..|... ..+...+.+
T Consensus 713 ~~~~isv~nNA~WAiGeia~k~g~~~~~~v~-~vl~~L~~iin~~~~~~tllENtAITIGrLg~~----~Pe~vAp~l-- 785 (885)
T KOG2023|consen 713 NPENISVCNNAIWAIGEIALKMGLKMKQYVS-PVLEDLITIINRQNTPKTLLENTAITIGRLGYI----CPEEVAPHL-- 785 (885)
T ss_pred ChhhchHHHHHHHHHHHHHHHhchhhhhHHH-HHHHHHHHHhcccCchHHHHHhhhhhhhhhhcc----CHHhcchhH--
Confidence 5556678889999999887654443343332 345666777777777777888888888888642 111222221
Q ss_pred CCcHHHHHHhccC-CChhHHHHHHHH
Q 017926 306 RFFLKSVVDLTAS-ADLDLQEKVFLE 330 (363)
Q Consensus 306 ~g~v~~Lv~lL~~-~d~~lqE~al~a 330 (363)
..+++.-...|+. +|.+-++.|-+.
T Consensus 786 ~~f~~pWc~sl~~i~DneEK~sAFrG 811 (885)
T KOG2023|consen 786 DSFMRPWCTSLRNIDDNEEKESAFRG 811 (885)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHH
Confidence 2344455555554 355666666655
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.54 E-value=22 Score=41.03 Aligned_cols=181 Identities=16% Similarity=0.117 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc----ChHHHHHHHHcCcHHHHH
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLM 222 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN----Np~~Q~~~le~G~lp~Ll 222 (363)
.+-|..||+-|..|...+|--..+.. .+|.++.|+..+...||..|...|+.+..+ +|.-...|.++ .+|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDR--VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDR--VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhh--hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhH
Confidence 46788898888888888876666665 489999999999999999999998877654 23233333343 688888
Q ss_pred HhhcCCCH-HHHHHHHHHHHHH-------------hc-----CCcccH---H-----HHHh-cCcHH-HHHHhhcCCCcc
Q 017926 223 KMVKSSFV-EEAVKALYTVSSL-------------IR-----NNLAGQ---E-----MFYV-EAGDL-MLQDILGNSSFE 273 (363)
Q Consensus 223 ~LL~s~~~-~v~~kAL~ALSsL-------------iR-----~~~~a~---~-----~f~~-~gG~~-~L~~lL~s~~~~ 273 (363)
.|+.+.+. -+|..-...|+-+ +| |.+... . ...+ ..+++ ....+|.++ +
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~--~ 591 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS--P 591 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC--c
Confidence 88887432 2332111111111 11 222220 0 0001 12443 334444444 3
Q ss_pred HHHHHHHHHHHHHHhhhhh-hcCC---------------CCcchhH---------------HhCCcHHHHHHhccCCChh
Q 017926 274 IRLHRKAVSLVGDLAKCQL-ENMH---------------KVEPPLF---------------RDRFFLKSVVDLTASADLD 322 (363)
Q Consensus 274 ~klr~kA~~lL~~L~~~~~-~~~~---------------~~~~~~l---------------~~~g~v~~Lv~lL~~~d~~ 322 (363)
..+|+--+--|.-||...+ +..+ ...+..| +++.++|.|.+-|..+..-
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~ 671 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA 671 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh
Confidence 4466655555555654321 1111 1111111 3567788888888888899
Q ss_pred HHHHHHHHHH
Q 017926 323 LQEKVFLEHV 332 (363)
Q Consensus 323 lqE~al~aL~ 332 (363)
+.++|++++.
T Consensus 672 Viv~aL~~ls 681 (1431)
T KOG1240|consen 672 VIVSALGSLS 681 (1431)
T ss_pred hHHHHHHHHH
Confidence 9999999976
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.44 E-value=57 Score=38.66 Aligned_cols=145 Identities=12% Similarity=0.152 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHhhcCC---------CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHH
Q 017926 128 SDAQLIQIAIDDLNNST---------LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWIL 198 (363)
Q Consensus 128 ~d~~lmk~al~~L~~~~---------~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~L 198 (363)
..-..||-.+..+.+.+ .+.-+.-.|.....++...-...+.|.. -+..++..|..+...+|..|..||
T Consensus 763 ~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~--yLk~Il~~l~e~~ialRtkAlKcl 840 (1692)
T KOG1020|consen 763 TVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDP--YLKLILSVLGENAIALRTKALKCL 840 (1692)
T ss_pred hhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHH--HHHHHHHHhcCchHHHHHHHHHHH
Confidence 33455666666655442 1112233444444445444444554443 256677888989999999999999
Q ss_pred HHHhcc------ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCc
Q 017926 199 GKASQN------NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 272 (363)
Q Consensus 199 gt~aqN------Np~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~ 272 (363)
+.++.- +|.+|..+. .=+.+++..||..|+--+|-.|-.++....++++ .|..-+.++
T Consensus 841 S~ive~Dp~vL~~~dvq~~Vh---------~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~-----~i~erIlDt-- 904 (1692)
T KOG1020|consen 841 SMIVEADPSVLSRPDVQEAVH---------GRLNDSSASVREAALDLVGRFVLSIPELIFQYYD-----QIIERILDT-- 904 (1692)
T ss_pred HHHHhcChHhhcCHHHHHHHH---------HhhccchhHHHHHHHHHHhhhhhccHHHHHHHHH-----HHHhhcCCC--
Confidence 999976 455555543 2334456789999999999888877877777764 455545554
Q ss_pred cHHHHHHHHHHHHHHhhh
Q 017926 273 EIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 273 ~~klr~kA~~lL~~L~~~ 290 (363)
.+.||.++...+.++|.+
T Consensus 905 gvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 905 GVSVRKRVIKILRDICEE 922 (1692)
T ss_pred chhHHHHHHHHHHHHHHh
Confidence 567999999999999974
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.34 E-value=19 Score=39.23 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=97.4
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccH
Q 017926 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQ 251 (363)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~ 251 (363)
-..+|.|...+++.+..++..+..++.+++.-=+ ..+++.-.+|.|-.+... .+..++..++-|+..++ ..+
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~l 460 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QRL 460 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----HHH
Confidence 3467778888899999999999999999986322 445666778988887554 34678999999999998 345
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHH
Q 017926 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 324 (363)
Q Consensus 252 ~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lq 324 (363)
+.+.-..-+..+..+.+.. +..+......+...+..- ...- ..+.-+.++|.++-+...+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~--dp~iv~~~~~i~~~l~~~-----~~~g-~ev~~~~VlPlli~ls~~~~L~~~ 525 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTR--DPAIVMGFLRIYEALALI-----IYSG-VEVMAENVLPLLIPLSVAPSLNGE 525 (700)
T ss_pred HHHHhHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHhh-----cccc-eeeehhhhhhhhhhhhhcccccHH
Confidence 5555556667777777766 455677777777777642 1111 344557888988888777644333
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.25 E-value=31 Score=37.16 Aligned_cols=107 Identities=22% Similarity=0.171 Sum_probs=72.8
Q ss_pred hhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 017926 168 NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 168 n~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~ 247 (363)
.+|+. |-+..+++.+.+++..||..++.+|+-+..+--++- ..+-.|.+..|.+=+-...+.||..|+.+|+-.=. .
T Consensus 86 ~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eID-e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe-~ 162 (885)
T COG5218 86 EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREID-EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE-M 162 (885)
T ss_pred hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-c
Confidence 34442 567778888899999999999999999886543333 34555778888776666677899999999987632 2
Q ss_pred cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 248 ~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
..+.+-++ ...|+.+++.+. +..+|+-|+.
T Consensus 163 ~~neen~~----~n~l~~~vqnDP-S~EVRr~all 192 (885)
T COG5218 163 ELNEENRI----VNLLKDIVQNDP-SDEVRRLALL 192 (885)
T ss_pred cCChHHHH----HHHHHHHHhcCc-HHHHHHHHHH
Confidence 22222222 347777777764 4457765543
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.01 E-value=59 Score=34.02 Aligned_cols=183 Identities=16% Similarity=0.119 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-cccCCCchhh--HHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccC
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNAND--LSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNN 205 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~-Lve~iDnAn~--l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNN 205 (363)
..++++.++.+.+.+ ..+.+..|+.+|-. ++++--.-.+ |.+ .+..+++.|.. .+..+|+.|.++|+.++.|-
T Consensus 285 ~~~v~~~l~~~~g~e-~a~~~k~alsel~~m~~e~sfsvWeq~f~~--iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q 361 (516)
T KOG2956|consen 285 SALVADLLKEISGSE-RASERKEALSELPKMLCEGSFSVWEQHFAE--ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ 361 (516)
T ss_pred hHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHHHHHHccchhhHHHHHHHHHHHHHHHhc
Confidence 467788888887764 34667777776655 4444322122 222 24456677755 88999999999999999875
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 017926 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (363)
Q Consensus 206 p~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~ 285 (363)
|.--..-. +=++.++++--++..+++-.-|.-+.+-++..+.|-+. +..+..++... |...-.-++..+.
T Consensus 362 ~~~l~Dst-E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~--D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 362 PARLFDST-EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTA--DEPRAVAVIKMLT 431 (516)
T ss_pred hHhhhchH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcC--cchHHHHHHHHHH
Confidence 53221111 13566666766676666655555555555544444332 23344444443 2222222333444
Q ss_pred HHhhhhhhcCCCCcchhHH--hCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 286 DLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 286 ~L~~~~~~~~~~~~~~~l~--~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
-|+.. .. .+.+. -..+.|.+++--.+....+|..+.-||+
T Consensus 432 kl~e~----l~---~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 432 KLFER----LS---AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHHhh----cC---HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 44421 11 12221 1357777788888888999998888877
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.96 E-value=5 Score=43.65 Aligned_cols=122 Identities=21% Similarity=0.197 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC
Q 017926 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 229 (363)
Q Consensus 150 k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~ 229 (363)
--.||.-|..++ -.|.|+|+. +-++.+|+++.+-+|..|.-++=.+.---|+.-. -.+|+|..-|.+++
T Consensus 126 ~giAL~GLS~fv-TpdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 126 VGLALSGLSCIV-TPDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPD 194 (877)
T ss_pred hhheeccccccc-CchhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCC
Confidence 344555555443 346777765 3567889999999999999998877654443322 46899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 230 ~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
+.|+..|+..||-+.|.+|.+.-.+ -+.+..+|.+.. +.=+-.|..-++.+|+
T Consensus 195 p~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSs-NNWmLIKiiKLF~aLt 247 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSS-NNWVLIKLLKLFAALT 247 (877)
T ss_pred chHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccC-CCeehHHHHHHHhhcc
Confidence 9999999999999999999765332 244555554432 3345567777777776
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.65 E-value=22 Score=35.32 Aligned_cols=98 Identities=27% Similarity=0.172 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 223 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~--lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~ 223 (363)
++..+..|.+++.-|.-. .-..|.+ --.++.+.++++...+ -..|+.++.+++| ++..++.++.. .+..++.
T Consensus 16 sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~ 89 (353)
T KOG2973|consen 16 SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKVLMD 89 (353)
T ss_pred ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHH
Confidence 456677777777766554 1222222 1245566777776655 6789999999999 47788888887 8888889
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 224 MVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 224 LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
++.++......-..-.|||+.|....
T Consensus 90 ~~~~p~~~lad~~cmlL~NLs~~~~~ 115 (353)
T KOG2973|consen 90 MLTDPQSPLADLICMLLSNLSRDDDE 115 (353)
T ss_pred HhcCcccchHHHHHHHHHHhccCchH
Confidence 99887666777777888899887444
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=83.40 E-value=20 Score=37.83 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=68.1
Q ss_pred CHHHHHHhcC----CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc-CC--CHHHHHHHHHHHHHHhcCC
Q 017926 175 GLSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS--FVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 175 gl~~Li~lL~----s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~-s~--~~~v~~kAL~ALSsLiR~~ 247 (363)
-++.+...|. ..+.+-+..+..+||++.. | ..++.|..++. +. +..+|..|++||..+...+
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~ 511 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD 511 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3444544442 2455556677777776653 2 23555666665 22 3568999999999887655
Q ss_pred cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHH
Q 017926 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQ 324 (363)
Q Consensus 248 ~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lq 324 (363)
|. -.-+.+..++.+...+..+|.-|..++-.- +|. ..++..++..+..+ +..+.
T Consensus 512 p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t--------~P~-------~~~l~~ia~~l~~E~~~QV~ 566 (574)
T smart00638 512 PR--------KVQEVLLPIYLNRAEPPEVRMAAVLVLMET--------KPS-------VALLQRIAELLNKEPNLQVA 566 (574)
T ss_pred ch--------HHHHHHHHHHcCCCCChHHHHHHHHHHHhc--------CCC-------HHHHHHHHHHHhhcCcHHHH
Confidence 54 234567777776655666777666554322 222 34566777777664 34443
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.72 E-value=2 Score=42.71 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=65.3
Q ss_pred CchhhHHhc--CCHHHHHHhcCCCCHH-HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 017926 165 DNANDLSKL--GGLSVLVGQLNHPDTD-IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS 241 (363)
Q Consensus 165 DnAn~l~~l--Ggl~~Li~lL~s~~~~-Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALS 241 (363)
+|+..|.+- .-+..|..+|++.++. .-.-||.=|+..+..-|+....+.++|+=..++.|++++++.++-.|+.|+-
T Consensus 345 ~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q 424 (432)
T COG5231 345 TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQ 424 (432)
T ss_pred hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence 344444432 3566778888876655 6678999999999999999999999999999999999999999988888877
Q ss_pred HHhc
Q 017926 242 SLIR 245 (363)
Q Consensus 242 sLiR 245 (363)
.++.
T Consensus 425 ~~i~ 428 (432)
T COG5231 425 TCIS 428 (432)
T ss_pred HHHh
Confidence 6654
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=82.70 E-value=22 Score=39.85 Aligned_cols=209 Identities=12% Similarity=0.103 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccc----CCCchhh--HHh----cCCHHHHHHh
Q 017926 113 RQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE----PIDNAND--LSK----LGGLSVLVGQ 182 (363)
Q Consensus 113 r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve----~iDnAn~--l~~----lGgl~~Li~l 182 (363)
=..|+-+++=.=+-|...++-++.++.|.+++.- .--..+|+.+-.=+. -...|.. +.+ ..-+|.+++.
T Consensus 797 ~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g-~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~ 875 (1030)
T KOG1967|consen 797 VLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTG-SPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSK 875 (1030)
T ss_pred HHHHHHHHHHHcCCcccchHHHHHHHhcCCcccc-chHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHH
Confidence 3556644432223444456667777777765531 111122222211111 1112222 333 2356777777
Q ss_pred cCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc-H
Q 017926 183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG-D 260 (363)
Q Consensus 183 L~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG-~ 260 (363)
..+....+|..-...|+++-.|-|+ |...=+. ..+|.|++-|+-++..+|..++..|.-++..++.-+..-. +- +
T Consensus 876 ~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~--~Tlv 952 (1030)
T KOG1967|consen 876 FETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL--STLV 952 (1030)
T ss_pred hccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH--hHHH
Confidence 7777788899999999999988887 3322222 6789999999988888999999999988877665443322 22 3
Q ss_pred HHHHHhhcCCCc-cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHH
Q 017926 261 LMLQDILGNSSF-EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLE 330 (363)
Q Consensus 261 ~~L~~lL~s~~~-~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~a 330 (363)
+.+..+=++.+. ..-+|.-|...+..|..- -|...=.-....++..|...|....--+|+.|.++
T Consensus 953 p~lLsls~~~~n~~~~VR~~ALqcL~aL~~~-----~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 953 PYLLSLSSDNDNNMMVVREDALQCLNALTRR-----LPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHHHHHHhcc-----CCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 444444333321 367899999999999852 22222222345678888888887767777777665
|
|
| >PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning | Back alignment and domain information |
|---|
Probab=82.69 E-value=10 Score=31.13 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh
Q 017926 189 DIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqNNp~~Q~~~l-e~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL 267 (363)
+||.+|..-|-+=-.++=-+...+. +.+.+..|+.-+..++...+..++--|+.++++ |.+...+.+.|+...|.++-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHH
Confidence 6777777655443334433444444 447788888888888777788999999998875 78889999999999988765
Q ss_pred cCCCccHHHHHHHHHH
Q 017926 268 GNSSFEIRLHRKAVSL 283 (363)
Q Consensus 268 ~s~~~~~klr~kA~~l 283 (363)
... +..++...--+
T Consensus 81 ~~~--~~~~~~~id~i 94 (98)
T PF14726_consen 81 PNV--EPNLQAEIDEI 94 (98)
T ss_pred hcC--CHHHHHHHHHH
Confidence 433 34455444333
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=82.66 E-value=29 Score=30.13 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=52.4
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhcC
Q 017926 177 SVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 177 ~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~-Ll~LL~s~---~~~v~~kAL~ALSsLiR~ 246 (363)
..|-.=|+ +.++.+...|..+|-++++|. +..+..+...+.+.. |++++... +..|+.|.+.-|-+-...
T Consensus 41 ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 41 RALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 33444444 468999999999999999997 578888888899997 99999742 346787777766655443
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.64 E-value=9.2 Score=36.40 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcccCCCchhhHHhcCCHHH-HHHhcCC-----CCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHH
Q 017926 150 SQRALQELLILVEPIDNANDLSKLGGLSV-LVGQLNH-----PDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLM 222 (363)
Q Consensus 150 k~~AL~~L~~Lve~iDnAn~l~~lGgl~~-Li~lL~s-----~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll 222 (363)
...||.-|.-++.......-|.... +|. +..+|+. +.+-+|..+..+||.+++|. +.+-........+|.++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~Ah-iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAH-IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecc-cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3567776777777777766666543 332 3355542 45789999999999999985 44555556679999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCc
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~ 248 (363)
++...++.--+.-|++-+.-++-+..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDv 221 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccch
Confidence 99999876556677777777776543
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=82.14 E-value=7.6 Score=33.26 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHH
Q 017926 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (363)
Q Consensus 235 kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~ 314 (363)
..+-.|+-+|+..+.+.. .++..|..=|+++ ++.++..|+.++-.+.. +..+.+...+.+..++..|+.
T Consensus 19 ~~~l~icD~i~~~~~~~k-----~a~r~l~krl~~~--n~~v~l~AL~lLe~~vk----Ncg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 19 ELILEICDLINSTPDGPK-----DAVRLLKKRLNNK--NPHVALLALTLLDACVK----NCGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred HHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHHhHHHHHHHHH
Confidence 455667777776644332 2345577777776 56789999999999987 366777888888999999999
Q ss_pred hccCC-Chh-HHHHHHHHHHhhcc
Q 017926 315 LTASA-DLD-LQEKVFLEHVFCGL 336 (363)
Q Consensus 315 lL~~~-d~~-lqE~al~aL~~~~~ 336 (363)
++... +.. ++++++..+..++.
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHH
Confidence 99875 434 99999999885554
|
Unpublished observations. Domain of unknown function. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=82.06 E-value=19 Score=31.94 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=75.6
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhh
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG--~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~ 293 (363)
.....+..+|.+.+..-|-.++.-+..+++.++ .+.|.+.++ +..|+.+|+.+. +..++.-++..+..|....
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~-~~~~~~~ai~~L~~l~~~~-- 99 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPD-PPSVLEAAIITLTRLFDLI-- 99 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHh--
Confidence 356678899999888888899999999998764 467777665 578888888863 5678888999999988632
Q ss_pred cCCCCcchhHHhC---CcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 294 NMHKVEPPLFRDR---FFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 294 ~~~~~~~~~l~~~---g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
...++....+... +++..++.+++. ..+.+.++.+|.
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~ 139 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALA 139 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHH
Confidence 2334433333332 445555555553 456666666655
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=81.56 E-value=10 Score=32.39 Aligned_cols=74 Identities=20% Similarity=0.135 Sum_probs=59.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc-HHHHHhcCcHHHHHHhhcCC-CccHHHHHHHHHHHHHHhhh
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGNS-SFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a-~~~f~~~gG~~~L~~lL~s~-~~~~klr~kA~~lL~~L~~~ 290 (363)
++..|-+-|+++++.++..|+..|-.+++|+... ...|....-+.-|+.++..+ ..+..+|.|+.-++......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677778888888899999999999999998664 44455556677788888764 56788999999999998853
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=81.32 E-value=8.7 Score=36.30 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=100.8
Q ss_pred ccCCCHHHHHHhHHHHHHHHHHcCCCCH----H-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCC-
Q 017926 102 VQRLSPSELKKRQMEIKELMEKLKTPSD----A-QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG- 175 (363)
Q Consensus 102 ~~~~~~e~l~~r~~~Lkeal~~l~~~~d----~-~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGg- 175 (363)
..++++++++ .|+++++.+..++. . .........+. ..+.+.+.-++|-+.-++-+...+.-+...++
T Consensus 33 ~~~l~~~el~----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~ 106 (268)
T PF08324_consen 33 ELKLSEEELE----SLESLLSALKSTSAYHSDLSAWLILLLKILL--SWPPESRFPALDLLRLAALHPPASDLLASEDSG 106 (268)
T ss_dssp CT-S-HHHHH----HHHHHHCCCCCC-SS---HHHHHHHHHHHHC--CS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH
T ss_pred ccCCCHHHHH----HHHHHHHHhcCCCccccchhHHHHHHHHHHH--hCCCccchhHHhHHHHHHhCccHHHHHhccccc
Confidence 3578887665 47777765543221 2 22333344443 34557799999999998888887776666542
Q ss_pred -HHHHHHhcC----CCCHHHHHHHHHHHHHHhccChHHHHHHHHc-C-cHHHHHHhhcCC----CHHHHH---HHHHHHH
Q 017926 176 -LSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLEL-G-ALSKLMKMVKSS----FVEEAV---KALYTVS 241 (363)
Q Consensus 176 -l~~Li~lL~----s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G-~lp~Ll~LL~s~----~~~v~~---kAL~ALS 241 (363)
...+..++. +..+..+..++++++++..+.+ .+..+++. + .+...+..+... +..++. ..++-+|
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nls 185 (268)
T PF08324_consen 107 IADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLS 185 (268)
T ss_dssp -HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 334444332 3578999999999999998544 55555554 3 344454444443 344443 4455555
Q ss_pred HHhcCCcc-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 242 SLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 242 sLiR~~~~-a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
......+. .... ..-+..+.+.+.....+....-+.+-++.+|+.
T Consensus 186 v~~~~~~~~~~~~---~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 186 VLLHKNRSDEEWQ---SELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHHHCTS-CCHH---HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCChHHH---HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 54444332 1100 112344555333332355677889999999985
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.20 E-value=4.1 Score=45.33 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHccc--------CCCchhhHHhcCCHHHHHHhcCC--------CCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 148 EDSQRALQELLILVE--------PIDNANDLSKLGGLSVLVGQLNH--------PDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 148 e~k~~AL~~L~~Lve--------~iDnAn~l~~lGgl~~Li~lL~s--------~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
+..+..+..++.+++ +-.-|++|.++||+..++.+... +..++-..|..+|+-+. --|+.|.+
T Consensus 567 ~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t-~iP~iq~~ 645 (1516)
T KOG1832|consen 567 EAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVT-SIPDIQKA 645 (1516)
T ss_pred hHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeE-ecchHHHH
Confidence 444555555555554 23569999999999999988753 33567777877777554 46888887
Q ss_pred HHHc--------CcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCcc------------------------------
Q 017926 212 VLEL--------GALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLA------------------------------ 249 (363)
Q Consensus 212 ~le~--------G~lp~Ll~LL~s~----~~~v~~kAL~ALSsLiR~~~~------------------------------ 249 (363)
+... .||..+++-.... +++++..||..|-+++-.-|.
T Consensus 646 La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le 725 (1516)
T KOG1832|consen 646 LAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLE 725 (1516)
T ss_pred HHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHH
Confidence 7643 2555555444322 456777777777665543222
Q ss_pred -----cHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 250 -----GQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 250 -----a~~~f~~~gG~~~L~~lL~s~~---~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
....+...+|+.+|+.+|+-.. +...+|.-|+..|.-|+. ++..++.+.+
T Consensus 726 ~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR------~~tVrQIltK 783 (1516)
T KOG1832|consen 726 QVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR------DDTVRQILTK 783 (1516)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc------CcHHHHHHHh
Confidence 2344556789999999997542 245688889999888885 5555555544
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=80.79 E-value=5.4 Score=36.12 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcc---ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN---Np~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~ 251 (363)
|+.++++.-+++..+|..|..+|..+.+. ||. -++|.|+.|..++++.++.+|...+..+...++.-.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 56778888899999999999999998874 663 479999999999999999999999999987776543
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=80.78 E-value=7.2 Score=31.50 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
+..++++..++++. +..|..+|..|..||+..+ ......-+.+..++..|+++++-|=-.|..+++.++.-.|.
T Consensus 3 ~~~~~al~~L~dp~--~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPL--PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--- 76 (92)
T ss_pred HHHHHHHHHccCCC--cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---
Confidence 45677888887765 4679999999999999988 11112224566777899999999999999999999987663
Q ss_pred HHHHcCcHHHHHHhhcC
Q 017926 211 QVLELGALSKLMKMVKS 227 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s 227 (363)
.++|.|++...+
T Consensus 77 -----~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -----EVLPILLDEYAD 88 (92)
T ss_pred -----HHHHHHHHHHhC
Confidence 356777665544
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.16 E-value=59 Score=32.34 Aligned_cols=208 Identities=13% Similarity=0.093 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~ 208 (363)
+...||..++.+.+... -..|...+-++..+...++.+... .+..++..+.++...+-...|.+++++++....+
T Consensus 42 ~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~ 116 (353)
T KOG2973|consen 42 SEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEV 116 (353)
T ss_pred hhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHH
Confidence 34556656565554432 223333444444455556666666 5566677777877788888999999999877666
Q ss_pred HHHHHHc-----CcHHHHHHhhcCCCHH--H-HHHHHHHHHHHhcCCcccHHHHHhcCc--HHHHHHhhcCCCccHHHHH
Q 017926 209 QKQVLEL-----GALSKLMKMVKSSFVE--E-AVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHR 278 (363)
Q Consensus 209 Q~~~le~-----G~lp~Ll~LL~s~~~~--v-~~kAL~ALSsLiR~~~~a~~~f~~~gG--~~~L~~lL~s~~~~~klr~ 278 (363)
....... .+++.|+.-+...+-. . -.-...-+++|.| ++.++..|....- .+.|..+-+ . +..+|+
T Consensus 117 ~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~ft~-~--~s~vRr 192 (353)
T KOG2973|consen 117 AALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLPFTS-E--DSQVRR 192 (353)
T ss_pred HHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhcccc-c--chhhhc
Confidence 6554432 3555555554433211 0 1122223334433 3555666655441 122222222 1 233443
Q ss_pred H-HHHHHHHHhhhhh------------------hcCCCCcchhHHhCCcHHHHHHhcc-----CCChhHHHHHHHHHHhh
Q 017926 279 K-AVSLVGDLAKCQL------------------ENMHKVEPPLFRDRFFLKSVVDLTA-----SADLDLQEKVFLEHVFC 334 (363)
Q Consensus 279 k-A~~lL~~L~~~~~------------------~~~~~~~~~~l~~~g~v~~Lv~lL~-----~~d~~lqE~al~aL~~~ 334 (363)
. .+..|.|.|...- .-.+++....=--.++...| +.|. .+|++++.+-+.||.++
T Consensus 193 ~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lL 271 (353)
T KOG2973|consen 193 GGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLL 271 (353)
T ss_pred cchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHH
Confidence 3 4455666554210 00011100000012333333 5554 34899999999999965
Q ss_pred cccccCchhhhhH
Q 017926 335 GLVFCTCPCIVRG 347 (363)
Q Consensus 335 ~~~~~~~~~~~r~ 347 (363)
.+.... ++.+|.
T Consensus 272 caT~~G-Re~lR~ 283 (353)
T KOG2973|consen 272 CATRAG-REVLRS 283 (353)
T ss_pred HhhhHh-HHHHHh
Confidence 444432 344444
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=80.01 E-value=17 Score=35.11 Aligned_cols=106 Identities=15% Similarity=0.013 Sum_probs=71.7
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhc
Q 017926 216 GALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (363)
Q Consensus 216 G~lp~Ll-~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~ 294 (363)
+.+..|+ .-+.+++..+|..++-+|+-.+=-+..... .-+..+...++.+ +..+|..|+..+.++....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~--- 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD--DEEVKITALKALFDLLLTH--- 95 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc---
Confidence 4555555 667787889999999998855443332221 2356677777554 6779999999999998642
Q ss_pred CCCCcch-------hHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 295 MHKVEPP-------LFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 295 ~~~~~~~-------~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+....+ ......+++.+.+.|.+.++++|..+..++.
T Consensus 96 -g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~ 139 (298)
T PF12719_consen 96 -GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLC 139 (298)
T ss_pred -CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222111 1223567888888888888888888877754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 4e-35
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 15/214 (7%)
Query: 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG 175
++K + L P ++ + AL+ L L E +DNA D +L G
Sbjct: 29 QMKSCLRVLSQPMPP------TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSG 82
Query: 176 LSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA- 233
+ +LVG+ L +R +A ++G SQN +Q+QVL LGAL KL++++ +
Sbjct: 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142
Query: 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293
VKAL+ +S L+R AG F G +L + +++ K+ L+ +L E
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK--VKSAFLLQNLLVGHPE 200
Query: 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKV 327
+ + ++ +V L + E V
Sbjct: 201 HKGTL-----CSMGMVQQLVALVRTEHSPFHEHV 229
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 6e-07
Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
+L G SVL+ + ++ SA++L +P + + +G + +L+ +
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217
Query: 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267
V++ L + SL+ + G +L L+++L
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRE--CREPELGLEELL 258
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 7e-10
Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 8/199 (4%)
Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
Q++ + + N+ +E ++ L L + + K GG+ LV L P
Sbjct: 57 SPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 115
Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248
+ + L + + V G L K++ ++ + V+ + L N
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175
Query: 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 308
+ + G L +I+ ++E L ++ L+ C N P +
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGG 228
Query: 309 LKSVVDLTASADLDLQEKV 327
++++ L +
Sbjct: 229 MQALGLHLTDPSQRLVQNC 247
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 3e-06
Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 14/168 (8%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
G L LV L D ++ +A IL + NN + V ++G + L++
Sbjct: 257 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316
Query: 225 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHR 278
V + E A+ AL ++S + Q L ++ +L S +
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV-RLHYGLPVVVKLLHPPSHWPLIK- 374
Query: 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326
V L+ +LA C N + R++ + +V L A D Q +
Sbjct: 375 ATVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRR 416
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 9/82 (10%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
+ + L LN D + +A ++ + S+ + +S +++
Sbjct: 8 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67
Query: 225 VKSS----FVEEAVKALYTVSS 242
++++ L+ +S
Sbjct: 68 MQNTNDVETARCTAGTLHNLSH 89
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 5/134 (3%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
++ + GG LV + + + + K + ++E G + L
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235
Query: 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284
+ L+T+ +L + +E L +LG+ + A ++
Sbjct: 236 LTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVV--TCAAGIL 290
Query: 285 GDLAKCQLENMHKV 298
+L +N V
Sbjct: 291 SNLTCNNYKNKMMV 304
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 19/172 (11%)
Query: 87 IGHSDPAKLKETAQDVQRLSPSELKKRQMEIKE-----LMEKLKTPSDAQLIQI-AIDDL 140
+G D + A + L+ + K + M + L+ + D + I AI L
Sbjct: 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
Query: 141 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK 200
+ T ++++ A + GL V+V L+ P + L +
Sbjct: 335 RHLTSRHQEAEMAQNAVR-------------LHYGLPVVVKLLHPPSHWPLIKATVGLIR 381
Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252
P + E GA+ +L++++ + + + + E
Sbjct: 382 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 30/200 (15%), Positives = 69/200 (34%), Gaps = 10/200 (5%)
Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
Q++ + + N+ +E ++ L L + + K GG+ LV L P
Sbjct: 54 SPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 112
Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248
+ + L + + V G L K++ ++ + V+ + L N
Sbjct: 113 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172
Query: 249 AGQEMFYVEAGDLM-LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307
+ + + +G L +I+ ++E L ++ L+ C N P +
Sbjct: 173 ESKLII-LASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAG 224
Query: 308 FLKSVVDLTASADLDLQEKV 327
++++ L +
Sbjct: 225 GMQALGLHLTDPSQRLVQNC 244
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 12/167 (7%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
G L LV L D ++ +A IL + NN + V ++G + L++
Sbjct: 254 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 313
Query: 225 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279
V + E A+ AL ++S + Q + G ++ +L S +
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK-A 372
Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326
V L+ +LA C N + R++ + +V L A D Q +
Sbjct: 373 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRR 413
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 160 LVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALS 219
L+ D+A + L LN D + +A ++ + S+ + +S
Sbjct: 2 LINYQDDA--ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 59
Query: 220 KLMKMVKSS----FVEEAVKALYTVSS 242
+++ ++++ L+ +S
Sbjct: 60 AIVRTMQNTNDVETARCTAGTLHNLSH 86
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 16/159 (10%)
Query: 95 LKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS-------- 146
L QD QR + ++Q ME++ L +A D N +
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462
Query: 147 ---LEDSQRALQE-----LLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWIL 198
L +Q L L + + A + G + L L+ + + +A +L
Sbjct: 463 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522
Query: 199 GKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKAL 237
+ S++ P K+ L + S L + ++ E A L
Sbjct: 523 FRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGL 561
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-09
Identities = 38/182 (20%), Positives = 81/182 (44%), Gaps = 16/182 (8%)
Query: 151 QRALQEL-LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209
A ++ IL + + + G L LV L+ P+ I + + W L +
Sbjct: 30 LSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89
Query: 210 KQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQD 265
+ V++ GAL L++++ S ++EA+ AL ++S + ++AG L L
Sbjct: 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ----AVIDAGALPALVQ 145
Query: 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 325
+L + + +I ++A+ + ++A E + V D L ++V L +S + + +
Sbjct: 146 LLSSPNEQIL--QEALWALSNIASGGNEQIQAV-----IDAGALPALVQLLSSPNEQILQ 198
Query: 326 KV 327
+
Sbjct: 199 EA 200
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-08
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
+ + G L LV L+ P+ I + + W L + + V++ GAL L+++
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188
Query: 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSL 283
+ S + +AL+ +S++ ++ EAG L L+ + + + +I+ ++A
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAV-KEAGALEKLEQLQSHENEKIQ--KEAQEA 245
Query: 284 VGDLAK 289
+ L
Sbjct: 246 LEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 25/169 (14%)
Query: 166 NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225
+ + L + QLN D + + + + + V++ GAL L++++
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63
Query: 226 KS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAV 281
S ++EA+ AL ++S Q ++AG L L +L + + +I ++A+
Sbjct: 64 SSPNEQILQEALWALSNIAS----GGNEQIQAVIDAGALPALVQLLSSPNEQIL--QEAL 117
Query: 282 SLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQE 325
+ ++A E + V P L V L +S + + +
Sbjct: 118 WALSNIASGGNEQIQAVIDAGALPAL----------VQLLSSPNEQILQ 156
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 5e-09
Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 8/199 (4%)
Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
Q++ + + N+ +E ++ L L + + K GG+ LV L P
Sbjct: 190 SPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD 248
Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248
+ + L + + V G L K++ ++ + V+ + L N
Sbjct: 249 SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308
Query: 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 308
+ + G L +I+ ++E L ++ L+ C N P +
Sbjct: 309 ESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGG 361
Query: 309 LKSVVDLTASADLDLQEKV 327
++++ L +
Sbjct: 362 MQALGLHLTDPSQRLVQNC 380
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 1e-07
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 12/167 (7%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
G L LV L D ++ +A IL + NN + V ++G + L++
Sbjct: 390 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 449
Query: 225 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279
V + E A+ AL ++S ++ Q + G ++ +L S +
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA- 508
Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326
V L+ +LA C N + R++ + +V L A D Q +
Sbjct: 509 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRR 549
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 5e-06
Identities = 17/178 (9%), Positives = 53/178 (29%), Gaps = 6/178 (3%)
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQ--RLSPSELKKRQMEIKELMEKLKTPS 128
L G + D + + + ++ Q + R ++ M
Sbjct: 45 SLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDE 104
Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
Q+ D + + + + + ++ + + L LN D
Sbjct: 105 GMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQ 164
Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSS 242
+ +A ++ + S+ + +S +++ ++++ L+ +S
Sbjct: 165 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH 222
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 8e-05
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 8/171 (4%)
Query: 129 DAQLIQIAIDDLNNSTLS-LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD 187
A +Q + LN + + L + LQ L + ++ + GG LV +
Sbjct: 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ--ESKLIILASGGPQALVNIMRTYT 331
Query: 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247
+ + + K + ++E G + L + L+T+ +L
Sbjct: 332 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391
Query: 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298
+ +E L +LG+ + A ++ +L +N V
Sbjct: 392 ---TKQEGMEGLLGTLVQLLGSDDINVVTC--AAGILSNLTCNNYKNKMMV 437
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 17/87 (19%), Positives = 35/87 (40%)
Query: 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210
+ A L L + + A + G + L L+ + + +A +L + S++ P K
Sbjct: 611 RVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK 670
Query: 211 QVLELGALSKLMKMVKSSFVEEAVKAL 237
+ L + S L + ++ E L
Sbjct: 671 KRLSVELTSSLFRTEPMTWNETGDLGL 697
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 6e-08
Identities = 63/435 (14%), Positives = 134/435 (30%), Gaps = 131/435 (30%)
Query: 27 RAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSS-IDGMLQW 85
+ +V +FW K ++ + ++D ++S D
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNS--------PETVLEMLQKLLYQIDPNWTSRSDHSS-- 221
Query: 86 AIGHSDPAKLKETAQDVQRLSPSELKKRQMEI------KELMEK-------LKTPSDAQL 132
+ ++ +++RL S+ + + + + L T Q+
Sbjct: 222 ----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 133 IQIAIDDLNNST---LSLEDSQRAL-----QELLILVEPIDNANDLSK--LGG----LSV 178
D L+ +T +SL+ L + LL+ DL + L LS+
Sbjct: 278 ----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSI 332
Query: 179 LVGQL-NHPDT-------DIRKISAWILGKASQNN--PLVQKQVLELGAL--------SK 220
+ + + T + K++ I ++S N P +++ + ++ +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 221 LMKMV----KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRL 276
L+ ++ S V V L+ S + + + + + L ++ E L
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYL-ELKVKLENEYAL 445
Query: 277 HRKAVSLV--------GDLAKCQLEN---------MHKVEP----PLFRDRF----FLKS 311
HR V DL L+ + +E LFR F FL+
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 312 VVDLTASA------------DLDLQEKV-----------------FLEHVFCGLVFCTCP 342
+ ++A L + FL + L+
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 343 CIVRGAVIVA-EYIY 356
++R A++ E I+
Sbjct: 566 DLLRIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-05
Identities = 62/385 (16%), Positives = 119/385 (30%), Gaps = 118/385 (30%)
Query: 15 LLVL------------------LMITMAIGRAERVNNSS-----------------SAGL 39
LLVL L+ T + ++ ++ L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 40 FWSTAK----EDEDQPRKAERNDD---STAAAIVNDHDELDGGFSSIDGMLQWAIGHSDP 92
K +D PR+ + S A + D ++ D W H +
Sbjct: 307 L---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG------LATWD---NWK--HVNC 352
Query: 93 AKLKETAQ-DVQRLSPSELKKR--QMEI--------KELMEKLKTPSDAQLIQIAIDDLN 141
KL + + L P+E +K ++ + L+ + + + ++ L+
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 142 NSTLSLEDSQRALQEL----LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197
+L + + + + L L ++N L + +V N P + +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-----SIVDHYNIP----KTFDSDD 463
Query: 198 LGKASQNNPLVQ------KQVLELGALSKLMKMV--KSSFVEEAVK----ALYTVSSLIR 245
L + K +E L +MV F+E+ ++ A S++
Sbjct: 464 LIPPYLDQYFYSHIGHHLKN-IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL- 521
Query: 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305
N Q FY I N + + R LV + L+ + K+E L
Sbjct: 522 -NTLQQLKFY-------KPYICDN---DPKYER----LVNAI----LDFLPKIEENLICS 562
Query: 306 RFFLKSVVDLTASADLDLQEKVFLE 330
++ DL A + E +F E
Sbjct: 563 KY-----TDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 42/355 (11%), Positives = 91/355 (25%), Gaps = 117/355 (32%)
Query: 39 LFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKET 98
LFW+ + V + ++ F M P+ +
Sbjct: 67 LFWTL-----------LSKQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRM 111
Query: 99 -AQDVQRL--SPSELKKRQMEIKELMEKLKTP----SDAQLIQI-----------AIDDL 140
+ RL K + + KL+ A+ + I A+D
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 141 NNS-------------TLSLEDSQRA----LQELLILVEP------------IDNANDLS 171
+ L +S LQ+LL ++P + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 172 KLGGLSVLVGQLNHPDT-----DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226
L L+ + + +++ +A L K++ +
Sbjct: 232 A--ELRRLLKSKPYENCLLVLLNVQ--NAKAW------------NAFNLS--CKILLTTR 273
Query: 227 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR-----LHRKAV 281
V + + A T + ++ + +L L ++ + + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 282 SLVGDLAK---CQLENMHKV----------------EPPLFRDRF-----FLKSV 312
S++ + + +N V EP +R F F S
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 7e-08
Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 24/212 (11%)
Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL 176
+ +E LK + L + L N R + + G +
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA----------------GAV 109
Query: 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVK 235
+ + L+ D+++ + W LG + ++ + + VL+ L L+++ + +
Sbjct: 110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169
Query: 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295
A++ +S+L R E V +L +L S ++ A + L+ + +
Sbjct: 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD--ACWALSYLSDGPNDKI 227
Query: 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKV 327
V D + +V+L D +
Sbjct: 228 QAV-----IDAGVCRRLVELLMHNDYKVVSPA 254
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 4e-07
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 6/169 (3%)
Query: 159 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218
+ P D + G LV L H D + + +G + + + +L AL
Sbjct: 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278
Query: 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278
L+ ++ S +A +T+S++ N A + L IL + F R +
Sbjct: 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR--K 336
Query: 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKV 327
+A + + K + +K + DL D + +
Sbjct: 337 EAAWAITNATSGGSAEQIK----YLVELGCIKPLCDLLTVMDSKIVQVA 381
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 9e-08
Identities = 33/158 (20%), Positives = 68/158 (43%), Gaps = 19/158 (12%)
Query: 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 233
L +V QLN PD + + L + + + V++ GAL L++++ S +
Sbjct: 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 234 VKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292
+AL+ +S++ Q ++AG L L +L + + +I ++A+ + ++A
Sbjct: 72 QEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQIL--QEALWALSNIASGGN 128
Query: 293 ENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQE 325
E + V P L V L +S + + +
Sbjct: 129 EQIQAVIDAGALPAL----------VQLLSSPNEQILQ 156
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 159 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218
I + + G L LV L+ P+ I + + W L + ++ V E GAL
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182
Query: 219 SKLMKMVKSS---FVEEAVKALYTVSS 242
KL ++ +EA +AL + S
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 20/181 (11%)
Query: 153 ALQEL-LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211
AL++L I + + G L LV L+ P+ I + + W L + +
Sbjct: 32 ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91
Query: 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNS 270
V++ GAL L++++ S + +AL+ +S++ Q ++AG L L +L +
Sbjct: 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSP 150
Query: 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQE 325
+ +I ++A+ + ++A E V+ L L + + +Q+
Sbjct: 151 NEQIL--QEALWALSNIASGGNEQKQAVKEAGALEKL----------EQLQSHENEKIQK 198
Query: 326 K 326
+
Sbjct: 199 E 199
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 46/291 (15%), Positives = 97/291 (33%), Gaps = 27/291 (9%)
Query: 44 AKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQ 103
AK + + D A+ + S++ +++ I ++ + Q +
Sbjct: 24 AKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVK-GINSNNLESQLQATQAAR 82
Query: 104 RLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILV 161
+L E + I A LI + L + S +S AL I
Sbjct: 83 KLLSREKQPPIDNI----------IRAGLIPKFVSFLGKTDCSPIQFESAWALTN--IAS 130
Query: 162 EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221
+ + G + + L P I + + W LG + + + V++ GA+ L
Sbjct: 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPL 190
Query: 222 MKMVKSSFVEEAVK-----ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRL 276
+ ++ + +T+S+L RN + VE L +L ++ E+
Sbjct: 191 LALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKV 327
+ + L E + V + + +V L + +L +
Sbjct: 251 D--SCWAISYLTDGPNERIEMV-----VKKGVVPQLVKLLGATELPIVTPA 294
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 37/253 (14%), Positives = 98/253 (38%), Gaps = 22/253 (8%)
Query: 87 IGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS 146
+ H+DP L ++ + L+ ++ +M + ++ + L + L
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVV-----------KKGVVPQLVKLLGATELP 289
Query: 147 L-EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205
+ + RA+ I+ + + G L+V L +P T+I+K + W + +
Sbjct: 290 IVTPALRAIGN--IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347
Query: 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM-LQ 264
+QV+ G + L+ ++ + + +A + +++ Q ++ V G + L
Sbjct: 348 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407
Query: 265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP--PLFRDRFFLKSVVDLTASADLD 322
++L +I + + + ++ + E + + E + + L + L +
Sbjct: 408 NLLSAKDTKII--QVILDAISNIFQAA-EKLGETEKLSIMIEECGGLDKIEALQRHENES 464
Query: 323 LQEKVF--LEHVF 333
+ + +E F
Sbjct: 465 VYKASLNLIEKYF 477
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 30/192 (15%), Positives = 76/192 (39%), Gaps = 8/192 (4%)
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISA 195
+ + STL+ + L L + A L + L LV L+H D ++ S
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253
Query: 196 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255
W + + + V++ G + +L+K++ ++ + AL + +++ +
Sbjct: 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313
Query: 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315
+ +L N I+ ++A + ++ + + + +V + + +V +
Sbjct: 314 DAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV-----VNHGLVPFLVGV 366
Query: 316 TASADLDLQEKV 327
+ AD Q++
Sbjct: 367 LSKADFKTQKEA 378
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 130 AQLIQIAIDDLNNSTLS-LEDSQRALQELL-ILVEPIDNANDLSKLGGLSVLVGQLNHPD 187
A L+ +TL+ +E L+ + ++ D+ L + L L+ L
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 276
Query: 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247
I + L S NP Q+ + ++GA+S L ++ S A+ + + +L+ N
Sbjct: 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336
Query: 248 LA 249
A
Sbjct: 337 PA 338
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 8e-06
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 170 LSKLGGLSVLVGQLNHPDTDIRKISAWILGK-ASQNNPLVQKQVLELGALSKLMKMVKSS 228
S G + LV QL D++++ A +L + + + +K + E+G++ LM+
Sbjct: 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 182
Query: 229 ----FVEEAVKALYTVSSLIRNN 247
++ + AL+ +S+ N
Sbjct: 183 KKESTLKSVLSALWNLSAHCTEN 205
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 6/102 (5%)
Query: 150 SQRALQELLILVEPIDNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQN 204
L +L + + G+ + P + +L K S
Sbjct: 3 HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF- 61
Query: 205 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246
+ + + ELG L + ++++ + + +L R
Sbjct: 62 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRY 103
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 3e-07
Identities = 37/283 (13%), Positives = 91/283 (32%), Gaps = 30/283 (10%)
Query: 51 PRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRL----- 105
P +D+ +++ D + M Q + D + +++
Sbjct: 61 PTDGADSDEEDESSVSADQQFYSQLQQELPQMTQ-QLNSDDMQEQLSATVKFRQILSREH 119
Query: 106 -SPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI 164
P ++ + + L+E ++ L A L N + + +
Sbjct: 120 RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA------- 172
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
+ + + L ++++ + W LG + ++ + VL+ A+ ++ +
Sbjct: 173 ---------DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223
Query: 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284
S+ A +T+S+L R + V L ++ + E + A +
Sbjct: 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD--ACWAI 281
Query: 285 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKV 327
L+ E + D K +V+L + +Q
Sbjct: 282 SYLSDGPQEAIQ-----AVIDVRIPKRLVELLSHESTLVQTPA 319
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 7e-07
Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 4/169 (2%)
Query: 159 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218
+ P + + + LV L+H T ++ + +G N L + V+ G L
Sbjct: 284 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 343
Query: 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278
L ++ S +A +T+S++ N + ++A + L E + +
Sbjct: 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAV-IDANLIPPLVKL-LEVAEYKTKK 401
Query: 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKV 327
+A + + + L+ + + +K + DL AD + E
Sbjct: 402 EACWAISNASSGGLQRPDIIR--YLVSQGCIKPLCDLLEIADNRIIEVT 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 7e-07
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 132 LIQIAIDDLNNSTLS-LEDSQRALQELL-ILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189
L+ +TL+ +E L+ + ++ D+ L + L L+ L
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 394
Query: 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247
I + L S NP Q+ + ++GA+S L ++ S A+ + + +L+ N
Sbjct: 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 174 GGLSVLVGQLNHPDTDIRKISAWILGK-ASQNNPLVQKQVLELGALSKLMKMVKSS---- 228
G + LV QL D++++ A +L + + + +K + E+G++ LM+
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302
Query: 229 FVEEAVKALYTVSSLIRNN 247
++ + AL+ +S+ N
Sbjct: 303 TLKSVLSALWNLSAHCTEN 321
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 17/123 (13%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLIL-VEPIDNANDLSKLGGLSVLVGQLNHPDT 188
++ A+ L + A + + + +++L G+ L+ L +
Sbjct: 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66
Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FVEEAVKALYTVSSLI 244
D+++ L + + +V EL + +L++++K + ++ L+ +SS
Sbjct: 67 DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126
Query: 245 RNN 247
+
Sbjct: 127 KLK 129
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 3e-06
Identities = 18/115 (15%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Query: 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK 235
+ V L+ D + I A+ + + ++QV +LG + KL+ +++S
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290
A + +L+ + + + G +L + + ++ L+ +L+
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSST 117
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 1e-05
Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 6/153 (3%)
Query: 142 NSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 201
L +R L + + L ++ L ++ +A L
Sbjct: 16 YYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHL 75
Query: 202 SQNNPLVQKQVLELGALSKLMKMVKSSFV---EEAVKALYTVSSLIRNNLAGQEMFYVEA 258
N V+ V +L + L+ ++ A AL +S + +
Sbjct: 76 CYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS--FGRDQDNKIAIKNCD 133
Query: 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291
G L +L + L + +L+
Sbjct: 134 GVPALVRLLRKARDM-DLTEVITGTLWNLSSHD 165
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 40.3 bits (93), Expect = 7e-04
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 10/135 (7%)
Query: 162 EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221
+ L + LS + L + + K ++ L + + K+++ A+ L
Sbjct: 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNL 400
Query: 222 MKMVKSSF--------VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 273
+K + + + L T++ +I NL + G L I + +
Sbjct: 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460
Query: 274 IRLHRKAVSLVGDLA 288
+ R A ++ +
Sbjct: 461 EKEVRAAALVLQTIW 475
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 1e-04
Identities = 25/189 (13%), Positives = 61/189 (32%), Gaps = 16/189 (8%)
Query: 143 STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK-- 200
T S + + L + + + + GG+ L+ ++ + L +
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564
Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYV 256
+ N + L + L+ +++ E++ AL ++S+ + ++
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV---RQRIIK 621
Query: 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 316
E G ++ L + L R A + +L V + +K + L
Sbjct: 622 EQGVSKIEYYL--MEDHLYLTRAAAQCLCNLVMS-----EDVIKMFEGNNDRVKFLALLC 674
Query: 317 ASADLDLQE 325
D +
Sbjct: 675 EDEDEETAT 683
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 5/150 (3%)
Query: 129 DAQLIQIAIDDLNNSTLSLE-DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD 187
+ + + + L + + L LL + P L G+S L+ L
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179
Query: 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEE----AVKALYTVSSL 243
IR +L +++N +QK V A +L+ ++ + L + +L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239
Query: 244 IRNNLAGQEMFYVEAGDLMLQDILGNSSFE 273
++NN + Q F + ++
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDEN 269
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 363 | |||
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 100.0 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.87 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.86 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.84 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.84 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.83 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.81 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.8 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.78 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.77 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.76 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.76 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.75 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.74 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.73 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.73 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.73 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.72 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.72 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.71 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.7 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.69 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.68 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.68 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.68 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.67 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.67 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.66 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.64 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.63 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.62 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.6 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.58 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.54 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.52 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.51 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.27 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.27 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.22 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 98.94 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.86 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.82 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.8 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.75 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.75 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.69 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.61 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.59 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 98.35 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.33 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.28 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.26 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.22 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 98.21 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.19 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.18 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.13 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.12 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.11 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.05 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.95 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.9 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.87 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.87 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.83 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.82 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.74 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.74 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.63 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.62 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.59 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.53 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.44 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.37 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.29 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.2 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.2 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.0 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.9 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 96.67 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 96.35 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.02 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 95.55 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 95.33 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 95.17 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 95.09 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 94.7 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 94.66 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 94.59 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 94.48 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 94.4 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 94.3 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 94.14 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 93.41 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.39 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.27 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 92.96 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 92.52 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 92.45 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 92.02 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 91.57 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 91.2 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 91.11 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 90.98 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 90.9 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 90.61 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 90.48 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 90.16 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 89.46 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 89.34 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 88.43 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 88.39 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 88.16 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 88.07 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 87.59 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 86.92 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 85.35 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 84.9 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 84.8 | |
| 1elk_A | 157 | Target of MYB1; superhelix of helices, endocytosis | 84.63 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 84.58 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 84.42 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 84.34 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 84.04 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 82.39 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 81.87 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 81.69 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 81.68 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 81.21 |
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=296.70 Aligned_cols=213 Identities=25% Similarity=0.315 Sum_probs=193.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhcC----------CCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHH-hc
Q 017926 115 MEIKELMEKLKTPSDAQLIQIAIDDLNNS----------TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QL 183 (363)
Q Consensus 115 ~~Lkeal~~l~~~~d~~lmk~al~~L~~~----------~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~-lL 183 (363)
.||.++|+ ++||++++||+++.+|.++ +.+.+.|+.|++.|.++++++|||++|++.||+++|+. +|
T Consensus 14 ~~~~~~~~--~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL 91 (296)
T 1xqr_A 14 VPRGSHMR--GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL 91 (296)
T ss_dssp ------CC--SCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH
Confidence 46777765 4589999999999999997 45668999999999999999999999999999999999 99
Q ss_pred CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHH
Q 017926 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (363)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~-~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~ 262 (363)
+++++++|..|+|+||++++|||.+|+.+++.|++|+|+++|+++ +..++.+|+||||+++|+++++++.|.+.||++.
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999964 6889999999999999999999999999999999
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 263 L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
|+.+|+++ +.++|++|+|+|++|+. .+++.+..+++.|+++.|+.+|.++|.+++++++.+|..+..
T Consensus 172 L~~lL~~~--d~~v~~~A~~aLs~L~~-----~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 172 LMRAMQQQ--VQKLKVKSAFLLQNLLV-----GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHSS--CHHHHHHHHHHHHHHHH-----HCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHh-----CChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 99999986 78899999999999996 367788999999999999999999999999999999984443
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=171.11 Aligned_cols=180 Identities=16% Similarity=0.217 Sum_probs=166.9
Q ss_pred CHHHHHHHHHHHHHcc-cCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 146 SLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lv-e~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
+.+.+..|+..|..+. .+.++...+.+.|+++.|+.+|+++++++|..|+|+|++++.+++..+..+++.|++|.|+++
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence 5788888999999988 455777889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
|++++..++..|+++|++++.+++.....+.+.|+++.|+.+|+++ +..++..|+++|.+|+. .++..+..+.
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~-----~~~~~~~~~~ 177 (210)
T 4db6_A 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQKQAVK 177 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHT-----SCHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHc-----CCcHHHHHHH
Confidence 9999999999999999999999888888999999999999999986 67899999999999995 3466778889
Q ss_pred hCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 305 DRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+.|+++.|+.++.+++.+++++|+.+|.
T Consensus 178 ~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 178 EAGALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999987
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-20 Score=166.84 Aligned_cols=192 Identities=17% Similarity=0.207 Sum_probs=174.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCC-chhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iD-nAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
++..++.+.+++ .+.+..|+..|..++...+ +...+.+.|++++|+.+|+++++++|..|+++|++++.+++..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 455667776653 7888999999999987764 8889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhh
Q 017926 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~ 291 (363)
+.+.|++|.|++++++++..++..|+++|++++.+++.....+.+.|+++.|+.+++++ +..++..++++|.+|+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~-- 157 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS-- 157 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT--
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHc--
Confidence 99999999999999999999999999999999998899999999999999999999987 57799999999999995
Q ss_pred hhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 292 ~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
.++.....+.+.|+++.|+.+|.+++..+++.++.+|..
T Consensus 158 ---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 196 (252)
T 4hxt_A 158 ---GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 196 (252)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 345556788899999999999999999999999999984
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.9e-20 Score=164.82 Aligned_cols=193 Identities=16% Similarity=0.190 Sum_probs=175.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
.++..++.+.++ +.+.+..++..|..+... .++...+.+.|++++|+.+|+++++++|..|+++|++++..++..+.
T Consensus 45 ~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 45 GVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp HHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 355566667654 478899999999999987 67888999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+.+.|++|.|++++++++..++..|+++|++++.+++.....+.+.|+++.|+.++.++ +..+|..|+++|.+|+.
T Consensus 123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~- 199 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS- 199 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHc-
Confidence 999999999999999999999999999999999999888888999999999999999976 57899999999999995
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
.++.....+.+.|+++.|++++.+++.++++.|+.+|..
T Consensus 200 ----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 200 ----GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp ----SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 356677888999999999999999999999999999983
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-20 Score=166.85 Aligned_cols=192 Identities=16% Similarity=0.192 Sum_probs=174.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccc-CCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
.+...++.+.+++ .+.+..|+..|..++. +.++...+.+.|++++|+.+|+++++.+|..|+|+|++++.+++..+.
T Consensus 55 ~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 55 ALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp HHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 4566777777653 7889999999999997 567888999999999999999999999999999999999998887768
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+++.|++|.|+++|++++..++..|+++|++++.+++.....+.+.|+++.|+.+|+++ +..++..|+++|.+|+.
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~- 209 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS- 209 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhc-
Confidence 899999999999999999999999999999999999888888999999999999999987 67899999999999995
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.++.....+.+.|+++.|+.++.++++++++.|+.+|.
T Consensus 210 ----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 210 ----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp ----SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred ----CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45667788899999999999999999999999999988
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=165.26 Aligned_cols=179 Identities=16% Similarity=0.227 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHcc-cCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 147 LEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lv-e~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
.+.+..|+..|..++ .+.++...+.+.|++++|+.+|+++++++|..|+++|++++..++..+..+++.|++|.|+++|
T Consensus 26 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 105 (252)
T 4db8_A 26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105 (252)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 355667777774433 3445667888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
++++..++..|+++|+++..+.+.....+.+.|+++.|+.+|+++ +..++..|+++|.+|+. .++.....+.+
T Consensus 106 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~ 178 (252)
T 4db8_A 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQIQAVID 178 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHc-----CChHHHHHHHH
Confidence 999999999999999999998776658899999999999999986 67899999999999995 34566777889
Q ss_pred CCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 306 RFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.|+++.|+++|.++++.+++.++.+|.
T Consensus 179 ~~~i~~L~~ll~~~~~~v~~~a~~~L~ 205 (252)
T 4db8_A 179 AGALPALVQLLSSPNEQILQEALWALS 205 (252)
T ss_dssp TTCHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999998
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-19 Score=156.06 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=142.7
Q ss_pred HHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 170 LSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 170 l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
...-|+.++|+.+|+++++++|..|+|+|++++..++..+..+++.|++|.|+++|++++..++..|+++|++++.+++.
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHH
Q 017926 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFL 329 (363)
Q Consensus 250 a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~ 329 (363)
....+++.||++.|+.+|+++ +..+|..|+++|.+|+. .++.....+.+.|+++.|+++|++++..+++.++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 160 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHc-----CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999987 67899999999999995 35566677889999999999999999999999999
Q ss_pred HHHh
Q 017926 330 EHVF 333 (363)
Q Consensus 330 aL~~ 333 (363)
+|..
T Consensus 161 aL~~ 164 (210)
T 4db6_A 161 ALSN 164 (210)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9984
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-19 Score=172.01 Aligned_cols=207 Identities=13% Similarity=0.029 Sum_probs=170.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcccC--CCchhhHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 135 IAIDDLNNSTLSLEDSQRALQELLILVEP--IDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 135 ~al~~L~~~~~s~e~k~~AL~~L~~Lve~--iDnAn~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
..+..|.. .+.+.+..|...|..|... .+|...+.+.||+|+|+++| ++.+++++..|+++|.+++..++..+..
T Consensus 131 ~LV~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~ 208 (354)
T 3nmw_A 131 ALVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208 (354)
T ss_dssp HHHHGGGC--SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCC--CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHH
Confidence 34444543 3678888888888888764 45778889999999999975 6788999999999999999878888888
Q ss_pred HH-HcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 017926 212 VL-ELGALSKLMKMVKSSFV----EEAVKALYTVSSLIR---NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (363)
Q Consensus 212 ~l-e~G~lp~Ll~LL~s~~~----~v~~kAL~ALSsLiR---~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~l 283 (363)
+. ..|++|.|+++|.++++ +++..|.++|+++.. +++.++..+.+.||++.|+.+|++. +..++..|+++
T Consensus 209 i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~a 286 (354)
T 3nmw_A 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNACGT 286 (354)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS--CHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC--ChHHHHHHHHH
Confidence 87 78999999999997654 578889999988886 6788899999999999999999986 56799999999
Q ss_pred HHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcccccCchhhhhHHHHHHh
Q 017926 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGLVFCTCPCIVRGAVIVAE 353 (363)
Q Consensus 284 L~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~~~~~~~~~~r~~~l~~~ 353 (363)
|.+|+. .+++.+..+.+.|+++.|+++|++++..+++.|+.||. .+....+.+|+...|++.
T Consensus 287 L~nLa~-----~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~---nL~~~~~~~~~~~~~~~~ 348 (354)
T 3nmw_A 287 LWNLSA-----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR---NLMANRPAKYKDANIMSP 348 (354)
T ss_dssp HHHHTS-----SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH---HHHTTCCGGGC-------
T ss_pred HHHHhC-----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH---HHHcCCHHHHhhhcccCC
Confidence 999985 36677889999999999999999999999999999998 445556888887777653
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=168.34 Aligned_cols=194 Identities=16% Similarity=0.231 Sum_probs=166.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCc--hhhHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDn--An~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
+.+.++.++.. +++.+..|...+..++...+| .+.+++.|++|+|+++|++ +++++|..|||+|++++..+++.+
T Consensus 59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 55666767543 678899999999988765544 5789999999999999974 578999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCc---cHHHHHHHHHHHHH
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF---EIRLHRKAVSLVGD 286 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~---~~klr~kA~~lL~~ 286 (363)
+.+++.|++|.|+++|++++..++..|++||++|+.+++..+..+.+.||++.|+.+|.++.. ...+++.+++.+++
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987532 34578899999999
Q ss_pred HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
++.. ...........++++.|+.+|.+++.+++..++.+|..
T Consensus 217 l~~~-----~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 217 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHCC-----CSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred Hhhc-----ccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9962 33334444456899999999999999999999999883
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-18 Score=169.26 Aligned_cols=191 Identities=13% Similarity=0.098 Sum_probs=163.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchh-hHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn-~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
+...+..|..+ +++.+..|...|..++...++.. .+.+.||+|+|+.+|++++++++..|+|+|++++..|+..+..
T Consensus 4 l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34456666654 45788999999999887666655 9999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhc--------CCC------ccHHH
Q 017926 212 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG--------NSS------FEIRL 276 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~--------s~~------~~~kl 276 (363)
+++.|++|.|+++|. +++..++..|+++|++|..+ +.....+.+ ||++.|+.+|. ++. .+..+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 999999999999999 77889999999999999988 778888889 99999999993 221 24567
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCcchhHHhC-CcHHHHHHhccC------CChhHHHHHHHHHHh
Q 017926 277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ADLDLQEKVFLEHVF 333 (363)
Q Consensus 277 r~kA~~lL~~L~~~~~~~~~~~~~~~l~~~-g~v~~Lv~lL~~------~d~~lqE~al~aL~~ 333 (363)
++.|+|+|.+|+. +++.+..+.+. |+++.|+.+|++ .+..++|+++.+|..
T Consensus 160 ~~~a~~aL~nLs~------~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~n 217 (457)
T 1xm9_A 160 FFNATGCLRNLSS------ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN 217 (457)
T ss_dssp HHHHHHHHHHHTT------SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHh
Confidence 7899999999995 36678888887 999999999985 466788888888774
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=162.14 Aligned_cols=187 Identities=16% Similarity=0.140 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHHcccCCC-chhhHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChHHHHHHHHcCcHHHHH
Q 017926 146 SLEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLM 222 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iD-nAn~l~~lGg-l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN-Np~~Q~~~le~G~lp~Ll 222 (363)
+++-+..|...|..++...+ +...+...|| +|+|+.+|.++++++|..|+|+|++++.+ |+..+..+.+.|++|.|+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 35668889999999987765 4445556777 99999999999999999999999999985 888999999999999999
Q ss_pred Hhh-cCCCHHHHHHHHHHHHHHhcCCcccHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhhhhhcCCCC
Q 017926 223 KMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKV 298 (363)
Q Consensus 223 ~LL-~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~-~~gG~~~L~~lL~s~~~~--~klr~kA~~lL~~L~~~~~~~~~~~ 298 (363)
++| ++++..++..|+.+|.+|..+++.++..+. ..||++.|+.+|++++.. ..++..|+++|.+|+... ..+++
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~ 254 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNED 254 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHH
Confidence 975 566788899999999999887777777887 689999999999876322 258999999999998521 02556
Q ss_pred cchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhh
Q 017926 299 EPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFC 334 (363)
Q Consensus 299 ~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~ 334 (363)
.+..+.+.|+++.|+++|++++..+++.|+.+|..+
T Consensus 255 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 255 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999943
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-18 Score=170.72 Aligned_cols=201 Identities=12% Similarity=0.021 Sum_probs=168.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcccC--CCchhhHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 134 QIAIDDLNNSTLSLEDSQRALQELLILVEP--IDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 134 k~al~~L~~~~~s~e~k~~AL~~L~~Lve~--iDnAn~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
...+..|.. .+.+.+..|...|..|... .+|...+...||+++|+++| .+.+++++..|+.+|++++..++..+.
T Consensus 246 p~LV~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 246 RALVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHGGGC--SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 334444543 3678888999999998764 35667888999999999974 677899999999999999987778888
Q ss_pred HHH-HcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 211 QVL-ELGALSKLMKMVKSSFV----EEAVKALYTVSSLIR---NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 211 ~~l-e~G~lp~Ll~LL~s~~~----~v~~kAL~ALSsLiR---~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
.+. ..|++|.|+++|.+.++ +++..|.++|+++.. +++.+...+.+.||++.|+.+|++. +..++..|++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~--~~~v~~~A~~ 401 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNACG 401 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS--CHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC--ChHHHHHHHH
Confidence 887 78999999999997654 478889999998886 6888899999999999999999986 5679999999
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcccccCchhhhh
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGLVFCTCPCIVR 346 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~~~~~~~~~~r 346 (363)
+|.+|+. .+++.+..+.+.|+++.|+++|.+++..+++.|+.||. .+....|.+||
T Consensus 402 aL~nLa~-----~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~---nL~~~~p~ky~ 457 (458)
T 3nmz_A 402 TLWNLSA-----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR---NLMANRPAKYK 457 (458)
T ss_dssp HHHHHHS-----SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH---HHHTCCSCC--
T ss_pred HHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH---HHHcCCHhhhc
Confidence 9999995 36678889999999999999999999999999999998 44444577776
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-17 Score=166.45 Aligned_cols=182 Identities=12% Similarity=0.102 Sum_probs=166.3
Q ss_pred CCHHHHHHHHHHHHHcccCCC-chhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHH
Q 017926 145 LSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 223 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iD-nAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~ 223 (363)
.+.+.+..|+..|.++.+..+ +...+...|+++.|+.+|.++++.++..|+++|++++..++..+..+++.|+++.|+.
T Consensus 263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~ 342 (529)
T 3tpo_A 263 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 342 (529)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHH
Confidence 366888899999999988764 4456778899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhH
Q 017926 224 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (363)
Q Consensus 224 LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l 303 (363)
+|.+++..++..|+|+|++|+.+++.....+++.|+++.|+.+|.+. +..+|..|+|+|.+|+.. .+++....+
T Consensus 343 LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~----~~~~~~~~l 416 (529)
T 3tpo_A 343 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSG----GTVEQIVYL 416 (529)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcC----CCHHHHHHH
Confidence 99999999999999999999999998889999999999999999987 677999999999999963 455677889
Q ss_pred HhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 304 RDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
++.|+++.|+++|.+.|.+++..++.+|.
T Consensus 417 ~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ 445 (529)
T 3tpo_A 417 VHCGIIEPLMNLLSAKDTKIIQVILDAIS 445 (529)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999987
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=162.59 Aligned_cols=194 Identities=16% Similarity=0.215 Sum_probs=165.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCC--chhhHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iD--nAn~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
+++.++.+.. .+++.+..|+..+..++..-. ....+++.|++|+|+.+|. ++++.++..|+|+|++++.+++...
T Consensus 78 l~~lv~~l~s--~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 78 VEDIVKGINS--NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHHTS--SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4555666654 367888899999988775443 3578999999999999996 5679999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCc---cHHHHHHHHHHHHH
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF---EIRLHRKAVSLVGD 286 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~---~~klr~kA~~lL~~ 286 (363)
..+++.|++|.|+.+|.+++..++..|++||++|+.+++..+..+.+.||++.|+.+|..+.. ...+++.+++.+++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986532 34578899999999
Q ss_pred HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
++.. ...........++++.|+.+|.+++.+++..++.+|..
T Consensus 236 l~~~-----~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 236 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHCC-----CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHhc-----ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9962 33334444557899999999999999999999999873
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-17 Score=165.10 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=165.7
Q ss_pred CCHHHHHHHHHHHHHcccCCC-chhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHH
Q 017926 145 LSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 223 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iD-nAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~ 223 (363)
.+.+.+..|+..|.++++..+ +...+...|+++.|+.+|.+++..++..|+++|++++..++..+..+++.|+++.|+.
T Consensus 244 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~ 323 (510)
T 3ul1_B 244 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 323 (510)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-
T ss_pred CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHH
Confidence 467888899999999988764 3456678899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhH
Q 017926 224 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (363)
Q Consensus 224 LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l 303 (363)
+|++++..++..|+|+|++|+.+++.....+.+.|+++.|+.++++. +..+|..|+|+|.+|+.. .+.+.+..+
T Consensus 324 LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~----~~~~~~~~L 397 (510)
T 3ul1_B 324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSG----GTVEQIVYL 397 (510)
T ss_dssp CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----CCHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcc----CCHHHHHHH
Confidence 99999999999999999999999999899999999999999999987 678999999999999973 456677889
Q ss_pred HhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 304 RDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
++.|+++.|+++|...|.+++..++.+|.
T Consensus 398 ~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ 426 (510)
T 3ul1_B 398 VHCGIIEPLMNLLSAKDTKIIQVILDAIS 426 (510)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=164.23 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHcccCCC-chhhHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChHHHHHHHHcCcHHHHHH
Q 017926 147 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK 223 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iD-nAn~l~~lGg-l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN-Np~~Q~~~le~G~lp~Ll~ 223 (363)
++-+..|...|..++.+.+ +...+...+| +|+|+.+|.+++++++..|+|+|++++.+ ++..+..+.+.|++|+|++
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence 4557788889999887765 3444556677 99999999999999999999999999985 7889999999999999999
Q ss_pred hh-cCCCHHHHHHHHHHHHHHhcCCcccHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhhhhhcCCCCc
Q 017926 224 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE 299 (363)
Q Consensus 224 LL-~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~-~~gG~~~L~~lL~s~~~~--~klr~kA~~lL~~L~~~~~~~~~~~~ 299 (363)
+| .+++..++..|+.||.+|..+++.++..+. ..||++.|+.+|.+++.. ..++..|+++|.+|+... ..+++.
T Consensus 294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~ 371 (458)
T 3nmz_A 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH 371 (458)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHH
Confidence 75 556778888999999999886667777887 689999999999876322 258999999999998521 025567
Q ss_pred chhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhc
Q 017926 300 PPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCG 335 (363)
Q Consensus 300 ~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~ 335 (363)
+..+.+.|+++.|+.+|++++.++++.|+.+|+.++
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999433
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-17 Score=151.50 Aligned_cols=193 Identities=12% Similarity=0.098 Sum_probs=155.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccc-CCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
+..+++.|..++...+.+..|...|..++. +.++-..+...||+|+|+++|.++++++|..|+|+|.+++..|++.+..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 445566666655445667777788888774 5567788999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcC--------------CCccHHH
Q 017926 212 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN--------------SSFEIRL 276 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s--------------~~~~~kl 276 (363)
+.+.|+||+|+++|. +.+.+++..|..+|-++.. ++.....+.+ +|++.|+.++.. ...+..+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 999999999999998 4677888877767776654 3556666665 589999886530 1135689
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCcchhHHhC-CcHHHHHHhccCC------ChhHHHHHHHHHH
Q 017926 277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTASA------DLDLQEKVFLEHV 332 (363)
Q Consensus 277 r~kA~~lL~~L~~~~~~~~~~~~~~~l~~~-g~v~~Lv~lL~~~------d~~lqE~al~aL~ 332 (363)
+.+|+..|.+|+. .+++.+..+.+. |+|+.|+.+++.. +...+|.+..+|.
T Consensus 168 ~~na~~~L~nLss-----~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~ 225 (233)
T 3tt9_A 168 FYNVTGCLRNMSS-----AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH 225 (233)
T ss_dssp HHHHHHHHHHHTT-----SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Confidence 9999999999985 356788888875 7899999999752 6789999999988
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=154.81 Aligned_cols=192 Identities=15% Similarity=0.209 Sum_probs=167.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC--CchhhHHhcCCHHHHHHhcCCCC-HHHHHHHHHHHHHHhccChHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPD-TDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnAn~l~~lGgl~~Li~lL~s~~-~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
+...++.|.+. +++.+..|+..|..++... .+...+...|+++.|+.+|.+++ +.+|..|+|+|++++..++..+
T Consensus 76 l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 56667777543 6788999999998886543 56788999999999999999876 9999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
..+++.|++|.|+.+|.+++..++..|+++|++|+.+++.....+.+.|+++.|+.+|..+ .+..++..++++|.+|+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999888889999999999999999543 367899999999999996
Q ss_pred hhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
. . .........|+++.|+.+|.+++..+++.++.+|..
T Consensus 233 ~-----~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~ 270 (528)
T 4b8j_A 233 G-----K-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSY 270 (528)
T ss_dssp S-----S-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred C-----C-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 2 2 223344568999999999999999999999999883
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-16 Score=158.29 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHHHHcccCCCc-hhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 146 SLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDn-An~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
+.+.+..++..|.+++...+. ...+...|+++.|+.+|.++++.++..|+++|++++..++...+.+++.|++|.|+.+
T Consensus 257 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 336 (528)
T 4b8j_A 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSL 336 (528)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHH
Confidence 567888999999999877644 3577888999999999999999999999999999999999999999999999999999
Q ss_pred hcCC-CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhH
Q 017926 225 VKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (363)
Q Consensus 225 L~s~-~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l 303 (363)
|.++ +..++..|+++|++++.+++.....+++.|+++.|+.+|.+. +..+|..|+++|.+|+.. .++.....+
T Consensus 337 L~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~----~~~~~~~~l 410 (528)
T 4b8j_A 337 LTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSG----GSHDQIKYL 410 (528)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH----SCHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC----CCHHHHHHH
Confidence 9998 889999999999999998888888899999999999999876 678999999999999973 356778888
Q ss_pred HhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 304 RDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+.|+++.|+.+|..+|.++++.++.+|.
T Consensus 411 ~~~~~i~~L~~lL~~~d~~v~~~al~~L~ 439 (528)
T 4b8j_A 411 VSEGCIKPLCDLLICPDIRIVTVCLEGLE 439 (528)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999988
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-16 Score=153.04 Aligned_cols=181 Identities=17% Similarity=0.129 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHHHcccCC-CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 146 SLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
+.+.+..++..|.+++... ++...+...|++++|+.+|.++++.+|..|+++|++++.+++...+.+++.|++|.|+++
T Consensus 205 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (450)
T 2jdq_A 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL 284 (450)
T ss_dssp CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHH
Confidence 4677888999999988864 566778888999999999999999999999999999999999888889999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
+.+++..++..|+++|++++++++...+.+++.|+++.|+.+|+++ +..+|..|+++|.+|+.. .++.....+.
T Consensus 285 l~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~----~~~~~~~~l~ 358 (450)
T 2jdq_A 285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSG----GSAEQIKYLV 358 (450)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH----CCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC----CCHHHHHHHH
Confidence 9998899999999999999999888888899999999999999976 578999999999999963 2445566777
Q ss_pred hCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 305 DRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+.|+++.|+++|..++..+++.++.+|.
T Consensus 359 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 386 (450)
T 2jdq_A 359 ELGCIKPLCDLLTVMDSKIVQVALNGLE 386 (450)
T ss_dssp HHTCHHHHHHGGGSSCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999987
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-15 Score=153.13 Aligned_cols=192 Identities=13% Similarity=0.166 Sum_probs=167.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC--CchhhHHhcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnAn~l~~lGgl~~Li~lL~s~-~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
+...++.|.+. +++.+..|+..|..++... .+...+...|+++.|+.+|.++ ++.+|..|+|+|++++..++..+
T Consensus 89 i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 45555666543 5788899999999987653 4456788899999999999987 89999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
..+++.|++|.|+.+|.+++..++..|+++|++++.+++.....+...|+++.|+.++.+. +..++..|+++|.+|+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998888888999999999999999985 67799999999999995
Q ss_pred hhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
. ...........++++.|+.+|.++|..++..++.+|..
T Consensus 245 ~-----~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 245 G-----KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 283 (530)
T ss_dssp C-----SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred C-----CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2 22334455668999999999999999999999999883
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=146.07 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=134.7
Q ss_pred CHHHHHHhcCCCCH--HHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHH
Q 017926 175 GLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 175 gl~~Li~lL~s~~~--~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~ 252 (363)
.+|+++++|+++++ +++..|+++|.+++.+|+..+..+.+.|+||+|+++|++++..++..|++||.+|..+++.+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999888 9999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc---------------
Q 017926 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------------- 317 (363)
Q Consensus 253 ~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~--------------- 317 (363)
.+.++||++.|+.+|++.. +..++..|+.+|.+|+. .+..+..+.+. .++.|++++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~------~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSS------NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHT------SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred HHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHc------ChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 9999999999999998421 56799999999999985 44566777764 6899998763
Q ss_pred -CCChhHHHHHHHHHHhhcc
Q 017926 318 -SADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 318 -~~d~~lqE~al~aL~~~~~ 336 (363)
..+.++++.|..+|..+++
T Consensus 161 ~~~~~~v~~na~~~L~nLss 180 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSS 180 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhc
Confidence 1267999999999994433
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-15 Score=148.65 Aligned_cols=193 Identities=13% Similarity=0.115 Sum_probs=164.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
.+...++.+.+. .+.+.+..|+..|..++.. .++...+...|+++.|+.+|+++++++|..|+|+|++++.+++..+.
T Consensus 65 ~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 65 VVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp HHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 455556666554 2578889999999998875 35667788899999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC-cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 211 QVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~-~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
.+++.|++|.|++++.+ .+..++..|+++|++++++. +.....+. .++++.|+.+++++ +..++..++++|.+|+
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Confidence 99999999999999996 57899999999999999876 43333333 78999999999976 6789999999999999
Q ss_pred hhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
. ..+.....+.+.|+++.|+.+|.+++..+++.++.+|..
T Consensus 221 ~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 221 D-----GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp S-----SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred C-----CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 5 234456677889999999999999999999999999983
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.5e-16 Score=156.27 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=135.6
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHH
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f 254 (363)
.+|.++.+|+++++++|..|+++|++++.+|+..+..+.+.|++|.|+++|++++..++..|++||.+|..+++++...+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999999999999899999999999999999999999999999999999889999999
Q ss_pred HhcCcHHHHHHhhc-CCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhc--------cCC------
Q 017926 255 YVEAGDLMLQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT--------ASA------ 319 (363)
Q Consensus 255 ~~~gG~~~L~~lL~-s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL--------~~~------ 319 (363)
.+.||++.|+.+|+ ++ +..++..|+++|.+|+. +++.+..+.+ |.++.|+++| .++
T Consensus 83 ~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~------~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSS------TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHT------SSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhc------CHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 99999999999998 54 56799999999999995 4677888888 9999999999 332
Q ss_pred --ChhHHHHHHHHHHhhc
Q 017926 320 --DLDLQEKVFLEHVFCG 335 (363)
Q Consensus 320 --d~~lqE~al~aL~~~~ 335 (363)
+.+++..++.+|..++
T Consensus 154 ~~~~~v~~~a~~aL~nLs 171 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLS 171 (457)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHc
Confidence 4556669999998443
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-16 Score=166.85 Aligned_cols=189 Identities=11% Similarity=0.015 Sum_probs=163.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcccCC-CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHH
Q 017926 135 IAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 213 (363)
Q Consensus 135 ~al~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~l 213 (363)
-.+..|. .+.+...+..|+..|.+|...- ++...+...||++.|+.+|.++++.||..|+++|++++.+ +..|..++
T Consensus 584 pLv~LL~-~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v 661 (810)
T 3now_A 584 PLLNLLQ-QDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFE 661 (810)
T ss_dssp HHHHTTS-TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHhC-CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHH
Confidence 3344443 3335556678899999998874 6788899999999999999999999999999999999984 56888888
Q ss_pred H-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhh
Q 017926 214 E-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (363)
Q Consensus 214 e-~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~-~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~ 291 (363)
+ .|+++.|+.|+.+++..++..|.+||+++..+++...+.+++ .||++.|+.+|.++ +.++|..|+|+|.+|+.
T Consensus 662 ~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~--d~~vq~~A~~aL~NL~~-- 737 (810)
T 3now_A 662 GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP--SPAVQHRGIVIILNMIN-- 737 (810)
T ss_dssp SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHT--
T ss_pred hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHh--
Confidence 6 699999999999999999999999999999988888888998 89999999999987 78899999999999985
Q ss_pred hhcCCCCcchhHHhCCcHHHHHHhccCC---ChhHHHHHHHHHH
Q 017926 292 LENMHKVEPPLFRDRFFLKSVVDLTASA---DLDLQEKVFLEHV 332 (363)
Q Consensus 292 ~~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d~~lqE~al~aL~ 332 (363)
++++....+.+.|+++.|+++|+.. +.++.+.|+.+|.
T Consensus 738 ---~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~ 778 (810)
T 3now_A 738 ---AGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLA 778 (810)
T ss_dssp ---TCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHH
Confidence 3456788899999999999999765 6899999998876
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=152.63 Aligned_cols=192 Identities=12% Similarity=0.085 Sum_probs=167.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcccCC-CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHH
Q 017926 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (363)
Q Consensus 134 k~al~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~ 212 (363)
...+..+.+ .+.+.+..|+..|..++... .+.......|++++|+.+|.++++.++..|+|+|++++.+++...+.+
T Consensus 218 ~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~ 295 (530)
T 1wa5_B 218 EPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV 295 (530)
T ss_dssp HHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 334445544 45677888999999998765 455566668999999999999999999999999999999988888889
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhh
Q 017926 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (363)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~ 292 (363)
++.|++|.|+.+|.+++..++..|+++|++++.+++.....+++.|+++.|+.+|+++ +..+|..|+++|.+|+.
T Consensus 296 ~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~--- 370 (530)
T 1wa5_B 296 IDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITA--- 370 (530)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT---
T ss_pred HhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHc---
Confidence 9999999999999998899999999999999999888888899999999999999987 57899999999999985
Q ss_pred hcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhh
Q 017926 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFC 334 (363)
Q Consensus 293 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~ 334 (363)
..+.....+.+.|+++.|+.+|..++..++..++.+|..+
T Consensus 371 --~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 371 --GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410 (530)
T ss_dssp --SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445566778899999999999999999999999998843
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.3e-16 Score=147.68 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=136.2
Q ss_pred HHHHH-HhhcCCCCHHHHHHHHHHHHHcccCCC-chhhHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChHHHH
Q 017926 134 QIAID-DLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 134 k~al~-~L~~~~~s~e~k~~AL~~L~~Lve~iD-nAn~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
.-.+. .|.+ .+++.|..|+..|..++.+-+ +.+.+.+.||+++|+.+|++ +++.+|..|+|+|++++.+++..++
T Consensus 84 ~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 84 HLLVGRYLEA--GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 34555 5543 367889999999999988654 56678899999999999985 5899999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.|.+.|++|.|+.+|++++..++.+|+|||++++.+++..+..|++.|+++.|+.+|.++ +..++.+|+.+|.+|+.
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999898999999999999999999987 55699999999999996
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-15 Score=149.61 Aligned_cols=193 Identities=13% Similarity=0.116 Sum_probs=166.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
.+...++.|.+. .+.+.+..++..|..+....++...+.+.|++++|+.+|+++++++|..|+++|++++.+++..+..
T Consensus 60 ~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 138 (529)
T 1jdh_A 60 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138 (529)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence 455566666543 3678888999999999888888999999999999999999999999999999999999998888999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhh
Q 017926 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~ 291 (363)
+.+.|++|.|++++++++..++..++.+|.++..+++..+..+.+.||++.|+.+|++.. +...+..++.++.+|+.
T Consensus 139 i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-- 215 (529)
T 1jdh_A 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-- 215 (529)
T ss_dssp HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT--
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc--
Confidence 999999999999999988889999999999999988999999999999999999998764 45677788899999984
Q ss_pred hhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 292 ~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+..+..+.+.|+++.|+.++..++..+++.++.+|.
T Consensus 216 ----~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~ 252 (529)
T 1jdh_A 216 ----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252 (529)
T ss_dssp ----STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 5567788888888888888887777777777766665
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=151.56 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=171.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
..+...++.|.+. .+.+.+..|...|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 56 ~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 4456666777653 367888999999999998888899999999999999999999999999999999999999888899
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+.+.|++|.|+++|++++..++..++.+|++++.+++..+..+.+.||++.|+.+|++.. ...++..++.+|.+|+.
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~- 212 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV- 212 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc-
Confidence 9999999999999999988888888999999999888889999999999999999999874 56788899999999984
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhh
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFC 334 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~ 334 (363)
.+..+..+++.|+++.|+.++..++..+++.++.+|..+
T Consensus 213 -----~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 213 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp -----CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred -----CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 567788889999999999988887778888777777633
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=154.85 Aligned_cols=192 Identities=14% Similarity=0.062 Sum_probs=157.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccc-CCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQK 210 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN-Np~~Q~ 210 (363)
+...+..|... +++.+..|...|..++. +.++...+...||+|+|+.+|.++++++|..|+|+|++++.. |+..+.
T Consensus 50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 55566666543 56778888888988885 667888999999999999999999999999999999999985 799999
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhc----------------CCCcc
Q 017926 211 QVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG----------------NSSFE 273 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~----------------s~~~~ 273 (363)
.+++.|+||.|+++|.+ .+.+++..|..||-+|.. ++.....+++ +|++.|+.++. .+..+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 99999999999999997 467788888888888876 5667777774 68999999872 01125
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh-CCcHHHHHHhccC------CChhHHHHHHHHHHh
Q 017926 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTAS------ADLDLQEKVFLEHVF 333 (363)
Q Consensus 274 ~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~-~g~v~~Lv~lL~~------~d~~lqE~al~aL~~ 333 (363)
..++..|+++|.+|+. .++..+..+++ .|+++.|+.+|+. .+...+|.++.+|..
T Consensus 206 ~~V~~nAa~~L~NLs~-----~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~N 267 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSS-----ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN 267 (584)
T ss_dssp HHHHHHHHHHHHHHTS-----SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-----CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence 7899999999999995 34455777776 5778899999974 467899999999873
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-15 Score=159.14 Aligned_cols=180 Identities=13% Similarity=0.052 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHH---hcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLS---KLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~---~lGgl~~Li~lL~s~-~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~L 221 (363)
+.+-|..|...|..++...+....|. ..|++|+|+.+|.++ +...+..|+|+|++++..++..++.+++.|++|+|
T Consensus 549 ~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~L 628 (810)
T 3now_A 549 TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKI 628 (810)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence 45668888888888877666555442 257999999999876 44556799999999999999999999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 017926 222 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 300 (363)
Q Consensus 222 l~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~-~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~ 300 (363)
+.++.+++..++..|+.+|++|+.+ ++.+..|.+ .|+++.|+.++.++ +..+|+.|+|+|++|+. +++...
T Consensus 629 v~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~-----~s~~~~ 700 (810)
T 3now_A 629 EYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAIITS-----VSVKCC 700 (810)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHH-----HCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhC-----CCHHHH
Confidence 9999998889999999999999986 567888886 68899999999986 67899999999999996 245567
Q ss_pred hhHHh-CCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 301 PLFRD-RFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 301 ~~l~~-~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
..+.+ .|+++.|+.+|.++|.++|..|+.+|..
T Consensus 701 ~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N 734 (810)
T 3now_A 701 EKILAIASWLDILHTLIANPSPAVQHRGIVIILN 734 (810)
T ss_dssp HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 77887 8999999999999999999999999973
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=150.87 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=138.1
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-Cccc
Q 017926 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAG 250 (363)
Q Consensus 172 ~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~-~~~a 250 (363)
.-+++++|+.+|.+++++++..|+++|.+++..++..+..+.+.|+||+|+++|++++..++..|++||.+|..+ ++.+
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999986 6889
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc-------------
Q 017926 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA------------- 317 (363)
Q Consensus 251 ~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~------------- 317 (363)
...+.++||++.|+.+|++.. +..++..|+.+|.+|+. +++.+..+.+ +.++.|+++|.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~------~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSS------HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTT------SGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred HHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhC------CchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 999999999999999999742 46689999999999985 4566777775 46899999871
Q ss_pred -----CCChhHHHHHHHHHHhhc
Q 017926 318 -----SADLDLQEKVFLEHVFCG 335 (363)
Q Consensus 318 -----~~d~~lqE~al~aL~~~~ 335 (363)
..+.++++.|..+|..++
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs 220 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVS 220 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHHHHHHHHh
Confidence 236899999999999443
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.6e-14 Score=150.12 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=163.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~ 212 (363)
+...+..|.+. .+.+.+..|+..|..+....++...+...|++++|+.+|+++++.+|..|+++|++++.+++..+..+
T Consensus 194 i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 33344445443 36788999999999988888888899999999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhh
Q 017926 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (363)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~ 292 (363)
.+.|++|.|+++|.+++..++..++.+|..++.+++..+..+.+.||++.|+.+|++.+ +...+..++.++.+|+.
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~--- 348 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV--- 348 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHT---
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhc---
Confidence 99999999999999988888999999999999888999999999999999999999864 45677788999999984
Q ss_pred hcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 293 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+..+..+.+.|+++.|+.+|.+++..+++.++.+|.
T Consensus 349 ---~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 349 ---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385 (780)
T ss_dssp ---STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4456777778888888888877777777777666655
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-14 Score=139.08 Aligned_cols=193 Identities=13% Similarity=0.065 Sum_probs=162.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhc-CCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~l-Ggl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
+...++.+.+ .+++.+..|+..|..+..+.++...+... |++++|+.+|.+ +++++|..|+++|++++.+ +..+.
T Consensus 19 i~~Lv~lL~~--~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~ 95 (529)
T 1jdh_A 19 IPELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLL 95 (529)
T ss_dssp HHHHHHHHTC--SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHH
Confidence 4445555553 36678889999999988877666566654 899999999964 5899999999999999875 66899
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+.+.|++|.|+++|+++++.++..|+++|.+++.+++..+..+.+.|+++.|+.+|+++ +.+++..++.++.+|+.
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la~- 172 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAY- 172 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHT-
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999998777888899999999999999986 56788889999999985
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHHhhc
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHVFCG 335 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~~~~ 335 (363)
.+++.+..+.+.|.++.|+.+|+.+ +...++.+..+|..++
T Consensus 173 ----~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 214 (529)
T 1jdh_A 173 ----GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp ----TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ----CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 3567788888999999999999876 5567777888877433
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-13 Score=143.61 Aligned_cols=202 Identities=14% Similarity=0.113 Sum_probs=162.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCc----hhhHHhcCCHHHHHHhcCCCCH-HHHHHHHHHHHHHhccChH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN----ANDLSKLGGLSVLVGQLNHPDT-DIRKISAWILGKASQNNPL 207 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDn----An~l~~lGgl~~Li~lL~s~~~-~Ir~~Aa~~Lgt~aqNNp~ 207 (363)
+...++.+.+.+...+.+..|+..|..++..... ...+...|++++|+.+|.+++. .+|..|+|+|++++. ++.
T Consensus 443 i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~ 521 (780)
T 2z6g_A 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPA 521 (780)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS-SHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc-CHH
Confidence 4455555655333457788889999988764322 3477789999999999988764 999999999999997 566
Q ss_pred HHHHHHHcCcHHHHHHhhcCCC----------------------HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHH
Q 017926 208 VQKQVLELGALSKLMKMVKSSF----------------------VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s~~----------------------~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~ 265 (363)
.|..+.+.|++|.|+++|.+.+ .+++..++.||++++++ +.++..+.+.|+++.|+.
T Consensus 522 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~ 600 (780)
T 2z6g_A 522 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD-IHNRIVIRGLNTIPLFVQ 600 (780)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC-hhhHHHHHHCCcHHHHHH
Confidence 7888999999999999997632 34566788889988864 677778889999999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcccccCchhhh
Q 017926 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGLVFCTCPCIV 345 (363)
Q Consensus 266 lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~~~~~~~~~~ 345 (363)
+|.++ +..++..|+.+|.+|+. ++..+..+.+.|+++.|+.++.+++.++++.|+.||..+. ...+..|
T Consensus 601 lL~~~--~~~v~~~a~~aL~~L~~------~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~---~~~~~~~ 669 (780)
T 2z6g_A 601 LLYSP--IENIQRVAAGVLCELAQ------DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS---EDKPQDY 669 (780)
T ss_dssp GGGCS--CHHHHHHHHHHHHHHHT------SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH---TTSCTTH
T ss_pred HHcCC--CHHHHHHHHHHHHHHhc------CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH---cCChHhh
Confidence 99987 67799999999999984 5567888999999999999999999999999999988433 3333455
Q ss_pred hH
Q 017926 346 RG 347 (363)
Q Consensus 346 r~ 347 (363)
+.
T Consensus 670 ~~ 671 (780)
T 2z6g_A 670 KK 671 (780)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-13 Score=140.03 Aligned_cols=193 Identities=13% Similarity=0.065 Sum_probs=164.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhc-CCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~l-Ggl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
+...+..|.+ .++..+..|+..|..+..+.++...+... |++++|+.+|.+ +++++|..|+.+|.+++.+ +..+.
T Consensus 16 i~~Lv~lL~~--~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~ 92 (644)
T 2z6h_A 16 IPELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLL 92 (644)
T ss_dssp HHHHHHHHTC--SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHH
Confidence 4455555653 36688999999999999888766666654 889999999976 4899999999999999976 55888
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+.+.|++|.|+++|+++++.++..|+++|.+++.+++.....+.+.|+++.|+.+|+++ +.+++..++.+|.+|+.
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~- 169 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAY- 169 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHT-
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC--CHHHHHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999998877888899999999999999987 46788888889999985
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHHhhc
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHVFCG 335 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~~~~ 335 (363)
.+++.+..+.+.|.++.|+.+|++. ...+++.++.+|..++
T Consensus 170 ----~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs 211 (644)
T 2z6h_A 170 ----GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 211 (644)
T ss_dssp ----TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred ----cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 3566778889999999999999987 4678888999988443
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=121.68 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=164.8
Q ss_pred HhHHHHHHHHHHcC--CCCHH--HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCC------------------chhh
Q 017926 112 KRQMEIKELMEKLK--TPSDA--QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------------------NAND 169 (363)
Q Consensus 112 ~r~~~Lkeal~~l~--~~~d~--~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iD------------------nAn~ 169 (363)
.||.-+..+- .+. -+.++ .-|+..+.+|++...+.|--..+|+.|..+....+ ++..
T Consensus 38 DRR~Av~~Lk-~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 116 (651)
T 3grl_A 38 DRRNAVRALK-SLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116 (651)
T ss_dssp HHHHHHHHHH-HTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence 4666665543 232 23332 33788888888877777777778888877655432 2334
Q ss_pred HH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChH-HHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 170 LS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 170 l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~-~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
|. +-++++.|+.+|++++-.+|.++..+|..++.++|. .|+.++.. +++|.|+.+|+++...+|..++..|+.++++
T Consensus 117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 43 458999999999999999999999999999999999 99999977 9999999999998889999999999999999
Q ss_pred CcccHHHHHhcCcHHHHHHhhcCCCc--cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC
Q 017926 247 NLAGQEMFYVEAGDLMLQDILGNSSF--EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (363)
Q Consensus 247 ~~~a~~~f~~~gG~~~L~~lL~s~~~--~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 319 (363)
++..|+.+.-.||++.|..++..... .-.+...++.++.+|+. .++.+...|.+.|+++.|..+|..+
T Consensus 197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr-----~N~sNQ~~FrEt~~i~~L~~LL~~~ 266 (651)
T 3grl_A 197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK-----NNNSNQNFFKEGSYIQRMKPWFEVG 266 (651)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTCGGGGGGGGCCC
T ss_pred CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh-----cCHHHHHHHHHcCCHHHHHHHhCCC
Confidence 99988888888999999999986431 23578899999999996 5777899999999999999999865
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=129.57 Aligned_cols=220 Identities=10% Similarity=0.080 Sum_probs=154.0
Q ss_pred HHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHH---HHHHHHHHHcccC-------C-----------C-
Q 017926 108 SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDS---QRALQELLILVEP-------I-----------D- 165 (363)
Q Consensus 108 e~l~~r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~s~e~k---~~AL~~L~~Lve~-------i-----------D- 165 (363)
|.+-+...+++.+++.++.+.+..+.-.++.++.|-..+.+.. ..-+..|..+.+. . +
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence 4555667777777777764445556666777765533211100 0012222222211 1 1
Q ss_pred chhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHH---HHHHHHHHHHH
Q 017926 166 NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE---EAVKALYTVSS 242 (363)
Q Consensus 166 nAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~---v~~kAL~ALSs 242 (363)
|...+.+.|++++|+.++.++++.+|..|+|+|.+++. +++++..+++.|+++.|+.+|.+.+.. .+..|+.||++
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999985 599999999999999999999987654 78999999999
Q ss_pred HhcCCcccHHHHHh---cCcHHHHHHhhcC-CCc-----------cHHHHHHHHHHHHHHhhhhhhcCC---CCcchhHH
Q 017926 243 LIRNNLAGQEMFYV---EAGDLMLQDILGN-SSF-----------EIRLHRKAVSLVGDLAKCQLENMH---KVEPPLFR 304 (363)
Q Consensus 243 LiR~~~~a~~~f~~---~gG~~~L~~lL~s-~~~-----------~~klr~kA~~lL~~L~~~~~~~~~---~~~~~~l~ 304 (363)
|.-...+.. .|.. .|+++.|+.+|.. +.. +..-+..|+.+|++|+.. .+ ++.+..++
T Consensus 528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~----~~n~~E~~r~~Ii 602 (778)
T 3opb_A 528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS----ETSDGEEVCKHIV 602 (778)
T ss_dssp HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----CSHHHHHHHHHHH
T ss_pred HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----CcccchHHHHHHH
Confidence 886543322 3422 4899999999983 211 112366899999999972 11 23467777
Q ss_pred hC-CcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 305 DR-FFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 305 ~~-g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
++ |+++.|.++|.+++..+|..|+.++-.
T Consensus 603 ~~~ga~~~L~~LL~s~n~~VrrAA~elI~N 632 (778)
T 3opb_A 603 STKVYWSTIENLMLDENVPLQRSTLELISN 632 (778)
T ss_dssp HSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 75 999999999999999999999999773
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.2e-11 Score=126.97 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=152.7
Q ss_pred HHHHHHhhcCCCC-HHHHHHHHHHHHHcccCCCchhhHHh---cCCHHHHHHhcCC-CCH------------HH-HHHHH
Q 017926 134 QIAIDDLNNSTLS-LEDSQRALQELLILVEPIDNANDLSK---LGGLSVLVGQLNH-PDT------------DI-RKISA 195 (363)
Q Consensus 134 k~al~~L~~~~~s-~e~k~~AL~~L~~Lve~iDnAn~l~~---lGgl~~Li~lL~s-~~~------------~I-r~~Aa 195 (363)
+..+..+.+.... .+.|..|...|..+....|...-|.. .|+++||+.+|.. +.. .+ +..|+
T Consensus 501 ~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL 580 (778)
T 3opb_A 501 KIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEAL 580 (778)
T ss_dssp HHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHH
Confidence 3344444443211 12588899999998888887776642 5999999999982 221 13 78999
Q ss_pred HHHHHHhccC----hHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH-HHHHhc------CcHHHH
Q 017926 196 WILGKASQNN----PLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYVE------AGDLML 263 (363)
Q Consensus 196 ~~Lgt~aqNN----p~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~-~~f~~~------gG~~~L 263 (363)
.+|+++|..+ +..+..+++. |++|.|..++.+++..++..|+.+||+++. ++.+. ..|... +++++|
T Consensus 581 ~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lL 659 (778)
T 3opb_A 581 LALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNIL 659 (778)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHH
T ss_pred HHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHH
Confidence 9999999975 4678888885 999999999999999999999999999997 45554 355432 358899
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhC-CcHHHHHHhccC--CChhHHHHHHHHHHhhcccc
Q 017926 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS--ADLDLQEKVFLEHVFCGLVF 338 (363)
Q Consensus 264 ~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~-g~v~~Lv~lL~~--~d~~lqE~al~aL~~~~~~~ 338 (363)
+.+++++ +..+|+.|+++|++++. .++.....+.+. +++..++.+++. ++.++|..++.++...+.+.
T Consensus 660 V~Ll~s~--D~~~r~AAagALAnLts-----~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 660 VKLLQLS--DVESQRAVAAIFANIAT-----TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHGGGCS--CHHHHHHHHHHHHHHHH-----HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCC--CHHHHHHHHHHHHHhcC-----CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 9999886 78899999999999975 255666777776 899999999998 89999999999988555443
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=104.84 Aligned_cols=211 Identities=14% Similarity=0.118 Sum_probs=161.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcc
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN 204 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aqN 204 (363)
++..+.+....+-+.+ +.-.|||..|+..|..+..+ .+.-+..+|+++|+..|+. .|.++-..+..+|..+...
T Consensus 17 qs~~etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 17 HTEAETIQKLCDRVAS-STLLDDRRNAVRALKSLSKK---YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp -CHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTTT---TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred CChhhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHH---hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 3567788888888877 44679999999999999654 3445557899999999965 5888888899999887765
Q ss_pred ChH-----------------HHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-cHHHHHhc-CcHHHHH
Q 017926 205 NPL-----------------VQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQ 264 (363)
Q Consensus 205 Np~-----------------~Q~~~l-e~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~-a~~~f~~~-gG~~~L~ 264 (363)
++. ..+.|+ +.+.++.|+.+|++++-.+|..++..|+.++++.+. .++.+... +|++.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 543 223444 448999999999999989999999999999999888 77888865 9999999
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCCh----hHHHHHHHHHHhhcccccC
Q 017926 265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL----DLQEKVFLEHVFCGLVFCT 340 (363)
Q Consensus 265 ~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~----~lqE~al~aL~~~~~~~~~ 340 (363)
.+|+++ ...+|..++.+|.+|+. .+++..+.+.-+|..+.|.+++..... .+.+-++..|..+.....+
T Consensus 173 ~lL~d~--rE~iRneallLL~~Lt~-----~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 173 DLLADS--REVIRNDGVLLLQALTR-----SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp GGGGCS--SHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhCc--hHHHHHHHHHHHHHHhc-----CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 999987 46799999999999995 566667777778999999999986432 4555555555532233333
Q ss_pred chhhhhHH
Q 017926 341 CPCIVRGA 348 (363)
Q Consensus 341 ~~~~~r~~ 348 (363)
....||+.
T Consensus 246 NQ~~FrEt 253 (651)
T 3grl_A 246 NQNFFKEG 253 (651)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 44556653
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-07 Score=81.83 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
+...|..|+..|..+-. -+.++.|+.+|+++++.+|..|+++|+.+.. ..+++.|++++
T Consensus 58 ~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l 116 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL 116 (201)
T ss_dssp SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH
Confidence 34555555555544321 1355666666666666666666666666532 13566666666
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
.+++..+|..|+++|+.+- . ...++.|..++.++ +..+|..|+..|..+..
T Consensus 117 ~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~---------------- 167 (201)
T 3ltj_A 117 KDEDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG---------------- 167 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHT--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS----------------
T ss_pred cCCCHHHHHHHHHHHHHhC--C---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------------
Confidence 6666666666666666652 1 23455666666554 44566666666665531
Q ss_pred CCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 306 RFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
...++.|..++..++..+++.|..+|.
T Consensus 168 ~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 168 ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 224556666666666667766666665
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-07 Score=82.56 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
+...+..|+..|..+-. -+.++.|+.+|+++++.+|..|+++|+.+.. .+.++.|++++
T Consensus 63 ~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l 121 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL 121 (211)
T ss_dssp CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH
Confidence 44555556555554321 2356667777777777777777777776642 24567777777
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
++++..+|..|+.+|+.+- . ...++.|..+++++ +..+|..|+..|..+..
T Consensus 122 ~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~---------------- 172 (211)
T 3ltm_A 122 KDEDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG---------------- 172 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS----------------
T ss_pred hCCCHHHHHHHHHHHHHcC--C---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------------
Confidence 7777777777777777761 1 13566677777654 45677777777776641
Q ss_pred CCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 306 RFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
...++.|..++..+++.++..|..+|.
T Consensus 173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 173 ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 245667777777777888888888877
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.7e-08 Score=85.32 Aligned_cols=152 Identities=15% Similarity=0.100 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHH
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
.+.+...++.|.++ +...|..|+..|..+-+ -++++.|+.+|+++++.+|..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~--~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 34456666666643 67888889888887533 3578999999999999999999999998863
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.+.++.|+++|.+++..+|..|+++|+.+- . ...++.|+.++.++ +..+|..|+..|..+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDE--DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999873 2 24678899999876 67799999999998852
Q ss_pred hhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
...++.|..+|..++..++..++.+|..
T Consensus 142 ----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 142 ----------------ERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2478899999998899999999999883
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=106.16 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=121.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcC-CcccHH
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRN-NLAGQE 252 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll-~LL~s~~~~v~~kAL~ALSsLiR~-~~~a~~ 252 (363)
.+.|+++.|++++++.|..||++|+++++ ++..+..+++.|+++.++ .+|.+++.++|..|.+||.+|+.+ .+....
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 57789999999999999999999999997 788999999999998865 578888899999999999999875 456677
Q ss_pred HHHhcCcHHHHHHhhcCCC------------ccH-------HHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHH
Q 017926 253 MFYVEAGDLMLQDILGNSS------------FEI-------RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (363)
Q Consensus 253 ~f~~~gG~~~L~~lL~s~~------------~~~-------klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv 313 (363)
.+++.|+++.|..+++... ... .+...++.+|.+|+. ...+....+...+.++.|+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e-----~s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLAL-----ARDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHTCHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHhcccHHHHH
Confidence 7888999999998875310 000 122346678888885 2445566778889999999
Q ss_pred HhccCC---ChhHHHHHHHHHH
Q 017926 314 DLTASA---DLDLQEKVFLEHV 332 (363)
Q Consensus 314 ~lL~~~---d~~lqE~al~aL~ 332 (363)
.+|... ..+++..++.+|.
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~ 210 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLT 210 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHH
Confidence 998543 4689999999987
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-07 Score=82.68 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~ 208 (363)
+.......++.|.++ +.+.|..|+..|..+-. -+.++.|+.+|+++++.+|..|+++|+.+..
T Consensus 12 ~~~~~~~~i~~L~~~--~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp CHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred CCcchHHHHHHhcCC--CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 444555666666654 56778888888876532 2578999999999999999999999998753
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 209 Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
..+++.|+++|.++++.+|..|+++|+.+- . ...++.|..++.++ +..+|..|++.+..+.
T Consensus 75 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG 135 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Confidence 257899999999999999999999999873 2 24678889999876 6779999999998885
Q ss_pred hhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHH
Q 017926 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEH 331 (363)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL 331 (363)
. ...++.|..+|..++..++..++.+|
T Consensus 136 ~----------------~~~~~~L~~~l~d~~~~vr~~A~~aL 162 (201)
T 3ltj_A 136 D----------------ERAVEPLIKALKDEDGWVRQSAADAL 162 (201)
T ss_dssp C----------------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred C----------------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 35778889999888888888887665
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.69 E-value=8.7e-08 Score=101.31 Aligned_cols=167 Identities=14% Similarity=0.057 Sum_probs=134.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcc-ChHHHHHHH
Q 017926 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVL 213 (363)
Q Consensus 136 al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li-~lL~s~~~~Ir~~Aa~~Lgt~aqN-Np~~Q~~~l 213 (363)
.++.|.++ +.++|..|+..|..++++-.+...+.+.|++.+++ .+|.+++.+||..|+++|++++.. .+.+...++
T Consensus 39 ll~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 39 VLKDLKSP--DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHSSS--CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHcCCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 34455543 56789999999999999877888899999999876 578999999999999999999985 688999999
Q ss_pred HcCcHHHHHHhhcCCCH---------------------HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcC-CC
Q 017926 214 ELGALSKLMKMVKSSFV---------------------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS 271 (363)
Q Consensus 214 e~G~lp~Ll~LL~s~~~---------------------~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s-~~ 271 (363)
+.|++++|+.++++... .+...++++|.+++.++..+...+...++++.|+.+|.+ +.
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~ 196 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI 196 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 99999999999853211 123467888899998888888899999999999888743 33
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcH
Q 017926 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 309 (363)
Q Consensus 272 ~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v 309 (363)
.+..++..|+.+|..|+. .++.....+.+.+..
T Consensus 197 ~~~~v~~~a~~~L~~ls~-----dn~~~~~~i~~~~~~ 229 (684)
T 4gmo_A 197 APQDIYEEAISCLTTLSE-----DNLKVGQAITDDQET 229 (684)
T ss_dssp SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHTCCSS
T ss_pred CcHHHHHHHHHHHHHHhc-----cCHHHHHHHHhcchH
Confidence 456799999999999985 355666677766643
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-06 Score=80.47 Aligned_cols=120 Identities=9% Similarity=0.088 Sum_probs=91.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHH
Q 017926 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 261 (363)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~ 261 (363)
+++++++.+|..|+++|+.+...++.... ..+|.|+.++++++..+|..|+++|+.+-. ...++
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~ 162 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIP 162 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHH
Confidence 34677888888888888888766654333 457888888888888888888888887632 24788
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 262 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 262 ~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
.|+.+++++ +..+|..|++.|..+.. + ...+++.|+.+|..++..++..++.+|..
T Consensus 163 ~L~~~l~d~--~~~vr~~a~~aL~~~~~------~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 163 LLINLLKDP--NGDVRNWAAFAININKY------D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp HHHHHHTCS--SHHHHHHHHHHHHHHTC------C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHhhcc------C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 888988876 56689999999887742 1 12467889999998899999999999883
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-06 Score=79.69 Aligned_cols=144 Identities=10% Similarity=0.026 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
+...+..++..|..+..... ...-..++.|+.+|+++++.+|..|+++|+.+.. .+++|.|+.++
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l 168 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLL 168 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH
Confidence 45566666666665432110 0112357888899999999999999999997653 25899999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
++++..+|..|+++|+.+-.+.+ ..++.|..+++++ +..+|..|++.|..+. +
T Consensus 169 ~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~----------------~ 221 (280)
T 1oyz_A 169 KDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK--NEEVRIEAIIGLSYRK----------------D 221 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS--CHHHHHHHHHHHHHTT----------------C
T ss_pred cCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC--CHHHHHHHHHHHHHhC----------------C
Confidence 99999999999999998842222 3567899999876 5779999999988775 2
Q ss_pred CCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 306 RFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
...++.|+.+|..++ ++..++.+|..
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~ 247 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGE 247 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHH
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHh
Confidence 357899999998654 88889999884
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-05 Score=75.83 Aligned_cols=193 Identities=17% Similarity=0.102 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-cccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh
Q 017926 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (363)
Q Consensus 128 ~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~-Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp 206 (363)
++.....++++.|.+. +.+++..+|-.|.. +-++.+.|..|+..+|+..|+......+.+.+.++..+++.+.- +.
T Consensus 115 sps~ra~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v 191 (339)
T 3dad_A 115 QLSVRVNAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FV 191 (339)
T ss_dssp CHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SH
T ss_pred CcHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-cc
Confidence 4556677888888854 57889999999999 55789999999999999999999999999999999999999986 44
Q ss_pred HHHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhc-------Cc---HHHHHHhhcCC-CccH
Q 017926 207 LVQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-------AG---DLMLQDILGNS-SFEI 274 (363)
Q Consensus 207 ~~Q~~~le-~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~-------gG---~~~L~~lL~s~-~~~~ 274 (363)
.--+.+++ ...|..|..++.+....+...|+.-|-++|-..+.+...+.+. .| ++-|+.+|++. ..+.
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 45555554 3688899999998777888888888888888776665555442 23 88999999732 2477
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCC----CcchhHHhCCcHHHHHHhccCC--ChhHHHH
Q 017926 275 RLHRKAVSLVGDLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASA--DLDLQEK 326 (363)
Q Consensus 275 klr~kA~~lL~~L~~~~~~~~~~----~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~ 326 (363)
.++.+|..||..+.... .+. +....+.+.|+=..+..++++. |++++++
T Consensus 272 elq~~amtLIN~lL~~a---pd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 272 ELLVYTVTLINKTLAAL---PDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 89999999999998641 111 2345566778877788878765 7777765
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.5e-06 Score=74.45 Aligned_cols=171 Identities=9% Similarity=0.055 Sum_probs=126.3
Q ss_pred CCCHHHHHHHHHHHHHcccC-CCc-hhhHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHH
Q 017926 144 TLSLEDSQRALQELLILVEP-IDN-ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALS 219 (363)
Q Consensus 144 ~~s~e~k~~AL~~L~~Lve~-iDn-An~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp 219 (363)
+.+-..|..|+..|..+++. .+. ..++.+ .++.|..+|. ..+..+|..|+.+++.++..- +....++ ...+|
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~--i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp 101 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGA--LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVP 101 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHH
Confidence 34678899999999998875 221 223333 3667788884 899999999999999999631 1122211 24799
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCC-
Q 017926 220 KLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV- 298 (363)
Q Consensus 220 ~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~- 298 (363)
.|+..+.+.+..+|..|..||.+++...+ ... -++.|...++++ +.++|..++.+|..++.. ..++
T Consensus 102 ~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~----~~~~~ 168 (242)
T 2qk2_A 102 SLLEKFKEKKPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNK--NPSVKSETALFIARALTR----TQPTA 168 (242)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT----CCGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----cCCCC
Confidence 99999999999999999999999987643 222 345677778876 568999999999997642 2222
Q ss_pred -cchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 299 -EPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 299 -~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
....+ ..+++.|+.+|...+..+|+.|..++..
T Consensus 169 ~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 169 LNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGT 202 (242)
T ss_dssp CCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 22333 3689999999998999999999999883
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-05 Score=79.67 Aligned_cols=174 Identities=10% Similarity=-0.006 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
.+.+.|..|++.|..+++..... ...-..+|.+..+++++++.+|..|+.+++.+++..+.- ......+|.+.++
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~ 250 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQA 250 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHH
Confidence 46788999999999988776532 223356778888999999999999999999999865531 2234578999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
+++++..+|..|+.+|+.++....+ ......-++.+..+++++ +..+|..++..+..++.. ..+.......
T Consensus 251 ~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~----~~~~~~~~~~ 321 (588)
T 1b3u_A 251 AEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCEN----LSADCRENVI 321 (588)
T ss_dssp HTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHT----SCTTTHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHH----hChhhhhhHH
Confidence 9888888999999999999875322 122345578888989876 567999999999999863 2222121122
Q ss_pred hCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 305 DRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
-..+++.+..+++..+..+|..++.+|.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~ 349 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIM 349 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3456677777777777788877777766
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-07 Score=78.40 Aligned_cols=118 Identities=9% Similarity=0.022 Sum_probs=87.5
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
..++.++.+|+++++.+|..|+++|+.+.. ..++.|+++|++++..+|..|+++|+.+- .+
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~----- 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE----- 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SH-----
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CH-----
Confidence 457788899999999999999999986542 12689999999888899999999998873 11
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..++.|..+|+++ +..+|..|++.|..+.. ...++.|..+|+.+|..++..+..+|.
T Consensus 73 ----~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 73 ----RAVEPLIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2478888888765 56789999999888752 246788899998889999999998875
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=80.67 Aligned_cols=169 Identities=9% Similarity=-0.008 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
+...|..+++.+..+++..... +..-..++.++.+|++++..||..|+.+++.++..... .+.....+|.|+.++
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~ 489 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMS 489 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHh
Confidence 4456666777776665433211 11112467788899999999999999999999875332 122346789999998
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
.+++..+|..++.+++.+++.... .++...-++.|..+++++ +..+|..++.++..++.. .+ ..+..
T Consensus 490 ~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~----~~----~~~~~ 556 (588)
T 1b3u_A 490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LD----NSTLQ 556 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SC----HHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHH----hc----hhhhH
Confidence 888888999999999999875332 233345678888888876 567999999999999853 11 22334
Q ss_pred CCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 306 RFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+++.|..++...|.++|+.|..|+.
T Consensus 557 ~~~~p~l~~l~~d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 557 SEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 567777888777779999999999987
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.7e-06 Score=79.76 Aligned_cols=137 Identities=16% Similarity=0.207 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHH--hcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc--CcHHHHH
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG--QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLM 222 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~--lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G~lp~Ll 222 (363)
.+....||+.|+++.+++...-.|.... +..|-. |..+..+.+|..|+.+||.+.+|||.+-+.|.+. ..+..+.
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 4556789999999999999988888653 455544 3456788999999999999999999999988875 4444444
Q ss_pred Hhh----cC---CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 223 KMV----KS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 223 ~LL----~s---~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.-| .. ....++..-+++|..|+.+. ..| ...|+..|..++...+.+..+|+|++-++.++-.
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 333 22 23455677899999999874 224 3568888888876543367799999999999874
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.2e-06 Score=90.37 Aligned_cols=171 Identities=13% Similarity=0.056 Sum_probs=116.7
Q ss_pred HHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC
Q 017926 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 229 (363)
Q Consensus 150 k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~ 229 (363)
|..|...|..+++... ..+.. ..++.+..+|++++..+|..|+++||.++...++.-.. .-.+.+|.|+.++++++
T Consensus 338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~ 413 (852)
T 4fdd_A 338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKK 413 (852)
T ss_dssp HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCC
Confidence 4455555555544322 12221 24666677888999999999999999999876642222 22468999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcH
Q 017926 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 309 (363)
Q Consensus 230 ~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v 309 (363)
..+|..|+++|+.+....++....-+-.+-++.|...+.++ +.++|..|++++.+++... .+...+.+ ..++
T Consensus 414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~----~~~l~~~l--~~ll 485 (852)
T 4fdd_A 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEA----CTELVPYL--AYIL 485 (852)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHH----GGGGGGGH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHh----hHhhHhHH--HHHH
Confidence 99999999999998875332111111124567888888775 5689999999999999642 22333333 4677
Q ss_pred HHHHHhccCCChhHHHHHHHHHH
Q 017926 310 KSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 310 ~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+.|+.+++..+......++.++.
T Consensus 486 ~~L~~~l~~~~~~~~~~~~~ai~ 508 (852)
T 4fdd_A 486 DTLVFAFSKYQHKNLLILYDAIG 508 (852)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 88888887666666555666655
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-05 Score=79.91 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=114.5
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHH
Q 017926 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (363)
Q Consensus 112 ~r~~~Lkeal~~l-~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~I 190 (363)
+|.+-+++++-.+ .|.+-.......++.+.+ .+.+.|..+.-.+..+.+.. .++. +-.+..+.+.|+++++.+
T Consensus 29 ~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s--~~~~~Krl~yl~l~~~~~~~---~e~~-~l~~n~l~kdL~~~n~~i 102 (591)
T 2vgl_B 29 KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQT--DNLELKKLVYLYLMNYAKSQ---PDMA-IMAVNSFVKDCEDPNPLI 102 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSS--SCHHHHHHHHHHHHHHHHHS---HHHH-HTTHHHHGGGSSSSSHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcccC---chHH-HHHHHHHHHHcCCCCHHH
Confidence 4666666665443 344433445556665443 35677766666666655421 1221 234567778899999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~ 270 (363)
|..|..+||++. +|+..+. .+|.+.+++.++++.+|.+|+.|+..+.+.+|.... +.+-++.|..+|.++
T Consensus 103 r~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~ 172 (591)
T 2vgl_B 103 RALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADS 172 (591)
T ss_dssp HHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCC
Confidence 999999999886 5555444 468899999999999999999999999998776442 345678999999876
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 017926 271 SFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~~ 289 (363)
+..++..|+.++..++.
T Consensus 173 --d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 173 --NPMVVANAVAALSEISE 189 (591)
T ss_dssp --CHHHHHHHHHHHHHHTT
T ss_pred --ChhHHHHHHHHHHHHHh
Confidence 67799999999999985
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=4e-05 Score=71.02 Aligned_cols=178 Identities=10% Similarity=0.027 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHHHH-cccC-CCc---hhhHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhccC--hHHH-HHHHH
Q 017926 144 TLSLEDSQRALQELLI-LVEP-IDN---ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNN--PLVQ-KQVLE 214 (363)
Q Consensus 144 ~~s~e~k~~AL~~L~~-Lve~-iDn---An~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNN--p~~Q-~~~le 214 (363)
+..-.+|..|++.|.. +++. .+. ..++..+ +..|...| +..+..+|..|+.+|+.++..- +..+ .+..
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~--~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~- 103 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL--LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS- 103 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHH--HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHH--HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH-
Confidence 4467889999999999 8854 121 2233333 66777888 7889999999999999999531 3333 3222
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhc
Q 017926 215 LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (363)
Q Consensus 215 ~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~ 294 (363)
-.+|.++..+++....|+..+.+|+-+++.+.++....-+-..-++.|...|+++ +..+|.-++.+|..++..
T Consensus 104 -~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~---- 176 (249)
T 2qk1_A 104 -LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE---- 176 (249)
T ss_dssp -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH----
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----
Confidence 3799999999998889999999999999986533110000012456778888887 567999999999999863
Q ss_pred CCCCcchh---HHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 295 MHKVEPPL---FRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 295 ~~~~~~~~---l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+..... .....+++.|..++...+.++|+.|..++.
T Consensus 177 -~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 177 -EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp -CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred -cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2221122 223679999999999999999999999988
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.12 E-value=7.3e-05 Score=77.22 Aligned_cols=159 Identities=15% Similarity=0.129 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 147 LEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
.+.|..++..+.++.-. .|. -.+++.+++++.+++..+|..+...+..++..+|+... -+++.|.+-|
T Consensus 27 ~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL 95 (591)
T 2vgl_B 27 KEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDC 95 (591)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHc
Confidence 45566666555553322 221 23678899999999999999999999999887765432 3567888889
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
.++++.+|..|+.+|+++. .+.....+ ++.+..++.++ +..+|.+|+.++..++. .+++ .+.+
T Consensus 96 ~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~--~~~VRk~A~~al~~i~~-----~~p~---~~~~ 158 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDE--DPYVRKTAAVCVAKLHD-----INAQ---MVED 158 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCS--CHHHHHHHHHHHHHHHH-----SSCC---CHHH
T ss_pred CCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCC--ChHHHHHHHHHHHHHHh-----hChh---hccc
Confidence 9989999999999999984 34333332 46788888876 67899999999999985 2444 3344
Q ss_pred CCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 306 RFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
.++++.+..+|...|+.++..|+.+|.-
T Consensus 159 ~~~~~~l~~lL~d~d~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 159 QGFLDSLRDLIADSNPMVVANAVAALSE 186 (591)
T ss_dssp HHHHHHHHHTTSCSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 6899999999998899999999999883
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00014 Score=67.38 Aligned_cols=180 Identities=12% Similarity=0.111 Sum_probs=139.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~-lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
.....++.|. +.+...+..+|..|++++...|-.-+... -.+++.++.++.+.|..+-..|..||+++..+.|-.-+
T Consensus 34 ~l~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3444445553 34678899999999999998754444433 35899999999999999999999999999999998888
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+.+ .+..|..++++.+.-.+..|.-.++.+ +--.+. -+-+..|.+++.|+ +.++|.-+..++.+++..
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~------~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDS------KLVRTYINELVVSP--DLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCC------HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGG
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccch------HHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcc
Confidence 8765 468888999988887888888888888 211111 13467899999776 778888999999999864
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..|+.... +++.-+.++|++.|+.++|+|+.++.
T Consensus 181 ---S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le 214 (265)
T 3b2a_A 181 ---SADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLE 214 (265)
T ss_dssp ---CSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHH
T ss_pred ---cCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 23444443 45566789999999999999999987
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.1e-05 Score=84.06 Aligned_cols=176 Identities=13% Similarity=0.066 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHHcccCCCchhhHHh--cCCHHHHHHhc-----------CC-----------CCHHHHHHHHHHHHH
Q 017926 145 LSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-----------NH-----------PDTDIRKISAWILGK 200 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDnAn~l~~--lGgl~~Li~lL-----------~s-----------~~~~Ir~~Aa~~Lgt 200 (363)
.+.+.+..|++.+..+++.....+.+.. -..+|.++..+ .. .+-.+|..|+.+|+.
T Consensus 268 ~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 268 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 3567788899988888876432221111 12356666666 22 123579999999999
Q ss_pred HhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 017926 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (363)
Q Consensus 201 ~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA 280 (363)
++...+. .++. ..+|.+.+++.+++..+|..|+++|++++.+.......+ -.+.++.|..+++++ +..+|..|
T Consensus 348 la~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~--~~~Vr~~a 420 (852)
T 4fdd_A 348 LANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDK--KALVRSIT 420 (852)
T ss_dssp HHHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCS--SHHHHHHH
T ss_pred HHHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCC--CHHHHHHH
Confidence 9986542 2222 467888888988888999999999999998866433222 235688999999876 67899999
Q ss_pred HHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 281 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 281 ~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
++++..++..... ...... -.++++.|+..|..+++.+++.++.+|.
T Consensus 421 ~~~l~~l~~~~~~---~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~ 467 (852)
T 4fdd_A 421 CWTLSRYAHWVVS---QPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFA 467 (852)
T ss_dssp HHHHHHTHHHHHH---SCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc---chHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999864210 111111 2367888999998889999999999987
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.95 E-value=7.8e-05 Score=72.39 Aligned_cols=201 Identities=8% Similarity=0.062 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCc--hhhHHhcCCHHHHHHhcCCC--CHHHHHHHHHHHHHHhccC
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLNHP--DTDIRKISAWILGKASQNN 205 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDn--An~l~~lGgl~~Li~lL~s~--~~~Ir~~Aa~~Lgt~aqNN 205 (363)
.+++...+..+.+.+.+...+..++..|..+++.... -..+. -..++.++.+|+++ ++.||..|+++++++..--
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3566667777765422567888999999998876521 11111 13567788899887 7999999999999976421
Q ss_pred hHHH-HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 017926 206 PLVQ-KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284 (363)
Q Consensus 206 p~~Q-~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL 284 (363)
...- ......-.++.|.+++.+++..++..++.+|..++..++.....++..+-++.+...+++. +..+|..++.++
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~a~~~l 283 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFW 283 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS--SHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHH
Confidence 1100 0001111467777788888889999999999999987765332222225567777778765 567899999999
Q ss_pred HHHhhhhhh----cCC---------CCcchhHH--hCCcHHHHHHhccCC-------ChhHHHHHHHHHHh
Q 017926 285 GDLAKCQLE----NMH---------KVEPPLFR--DRFFLKSVVDLTASA-------DLDLQEKVFLEHVF 333 (363)
Q Consensus 285 ~~L~~~~~~----~~~---------~~~~~~l~--~~g~v~~Lv~lL~~~-------d~~lqE~al~aL~~ 333 (363)
..++....+ ..+ ......+. -..+++.++..+... +..++..+..+|..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~ 354 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 999864200 000 01111111 134566677777542 34678888888773
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00018 Score=79.85 Aligned_cols=188 Identities=9% Similarity=0.061 Sum_probs=127.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCc-hhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDn-An~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
+.+.++.+.+ .+.+.|..|++.|...+...-. ...-..-..++.+++.|.++++.+|..|+.+|+.++...+.-
T Consensus 8 l~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--- 82 (1230)
T 1u6g_C 8 ISNLLEKMTS--SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--- 82 (1230)
T ss_dssp HHHHHHHTTC--SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---
T ss_pred HHHHHHhcCC--CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---
Confidence 3344444443 3567777777777765533110 000111134677889999999999999999999999865541
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc-----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a-----~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
.+ ...++.|+..+.+++..+|..|..+|+.++....+. .....-..-++.|...+.+. .+..+|..|+..+..
T Consensus 83 ~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMAD 160 (1230)
T ss_dssp HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHH
Confidence 11 246788999888878888999999999998875542 11112234577888888742 256789999999999
Q ss_pred HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
++.. ..+...+.+ ..+++.+...|.+++..+|+.++.|+..
T Consensus 161 ~~~~----~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 161 MLSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGH 201 (1230)
T ss_dssp HHHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHH----hHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 9853 222233322 4577888888888899999999999883
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.3e-05 Score=66.36 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=71.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~ 255 (363)
++.|+.+|+++++.+|..|+++||.+.. ..+++.|+++|++++..+|..|+++|+.+- .
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~-------- 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--G-------- 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--S--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c--------
Confidence 7899999999999999999999998763 135899999999888899999999999873 1
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 256 ~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
...++.|..+++++ +..+|..|+..|..
T Consensus 103 -~~a~~~L~~~l~d~--~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 -ERVRAAMEKLAETG--TGFARKVAVNYLET 130 (131)
T ss_dssp -HHHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHhCC--CHHHHHHHHHHHHh
Confidence 23578889999865 55688888877653
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00076 Score=74.84 Aligned_cols=196 Identities=14% Similarity=0.093 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH-
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV- 208 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~- 208 (363)
..++...++.+.+ .+.+.|..|+..|..+++.... ..+. ..++.|+..|.++++.+|..|+.+|+.++..-+.-
T Consensus 47 ~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~-~~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 47 RKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKE-YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCH-HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCH-HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence 3667778888864 4778899999999998876543 2222 24667778888889999999999999999754432
Q ss_pred -----HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 209 -----QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 209 -----Q~~~le~G~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
+... -...+|.|++.+. +++..++..|+.+++.++..++.....+. ..-++.|...|.++ +..+|.+|+.
T Consensus 122 ~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~--~~~vR~~a~~ 197 (1230)
T 1u6g_C 122 SGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP--RLAVRKRTII 197 (1230)
T ss_dssp --CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS--SHHHHHHHHH
T ss_pred cccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC--cHHHHHHHHH
Confidence 1222 2357999999998 47788899999999999975443222211 23456677777765 4678999998
Q ss_pred HHHHHhhhhh---------------h-cCCCCcch---------------hHH--hCCcHHHHHHhccCCChhHHHHHHH
Q 017926 283 LVGDLAKCQL---------------E-NMHKVEPP---------------LFR--DRFFLKSVVDLTASADLDLQEKVFL 329 (363)
Q Consensus 283 lL~~L~~~~~---------------~-~~~~~~~~---------------~l~--~~g~v~~Lv~lL~~~d~~lqE~al~ 329 (363)
++..++.... . ..+...+. .+. -..+++.+...+...++++++.++.
T Consensus 198 al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 198 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp HHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8888874310 0 00011110 010 1356778888888788999999998
Q ss_pred HHHhh
Q 017926 330 EHVFC 334 (363)
Q Consensus 330 aL~~~ 334 (363)
++..+
T Consensus 278 ~l~~l 282 (1230)
T 1u6g_C 278 AFESF 282 (1230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88743
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0003 Score=73.21 Aligned_cols=174 Identities=15% Similarity=0.118 Sum_probs=122.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
...+.++.+.+ .+.+.|....-.+..+.+.- .++..+ .+..+.+-|+++++.+|..|+++||++. +++.-
T Consensus 71 ~~~~vik~~~s--~~~~~Krl~Yl~~~~~~~~~---~e~~~l-~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~-- 140 (618)
T 1w63_A 71 GQLECLKLIAS--QKFTDKRIGYLGAMLLLDER---QDVHLL-MTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC-- 140 (618)
T ss_dssp GHHHHHHHHHS--SSHHHHHHHHHHHHHHCCCC---HHHHHH-HHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH--
T ss_pred hHHHHHHHHcC--CchHHHHHHHHHHHHHhCCC---cHHHHH-HHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH--
Confidence 33444454443 35566666555666666542 232221 4566777889999999999999999998 34332
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhh
Q 017926 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~ 291 (363)
...+|.+.++|.+.++.+|.+|+.|+..+.+.+|.... +-++.+..+|.++ +..++..|+.++..++..
T Consensus 141 ---~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~- 209 (618)
T 1w63_A 141 ---RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEK--NHGVLHTSVVLLTEMCER- 209 (618)
T ss_dssp ---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCS-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHh-
Confidence 25689999999999999999999999999998886543 4456777788775 677999999999999842
Q ss_pred hhcCCCCcchhHHhCCcHHHHHHhccC---------------CChhHHHHHHHHHH
Q 017926 292 LENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKVFLEHV 332 (363)
Q Consensus 292 ~~~~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~~lqE~al~aL~ 332 (363)
+++....+. .+++.++.+|.. .++-.|-.++++|.
T Consensus 210 ----~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~ 259 (618)
T 1w63_A 210 ----SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLR 259 (618)
T ss_dssp ----HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHH
T ss_pred ----ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHH
Confidence 222222332 567777777652 47888888888877
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.82 E-value=4.5e-05 Score=74.09 Aligned_cols=194 Identities=9% Similarity=-0.022 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhh------HHh------cCCHHHHHHhcCCCCHHHHHHHHH
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND------LSK------LGGLSVLVGQLNHPDTDIRKISAW 196 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~------l~~------lGgl~~Li~lL~s~~~~Ir~~Aa~ 196 (363)
..+.+...+.++.+.+.+.+.|..|...|..++.......+ ... ...-..|+..|.++++.+ ..++.
T Consensus 33 ~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~ 111 (462)
T 1ibr_B 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQ 111 (462)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHH
T ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHH
Confidence 35566677788887666788899999888888765431111 111 112234677888888888 99999
Q ss_pred HHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCC-cccHHHHHhcCcHHHHHHhhcCCCc
Q 017926 197 ILGKASQNN-PLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSF 272 (363)
Q Consensus 197 ~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~--~~~v~~kAL~ALSsLiR~~-~~a~~~f~~~gG~~~L~~lL~s~~~ 272 (363)
+|+.++... |. .. -.+.+|.|++.+.++ +..++..++.+|+.+++.. +.....+. ...++.+..+++++..
T Consensus 112 ~i~~ia~~~~~~-~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 112 CVAGIACAEIPV-NQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHHHHHHHHGGG-TC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhccc-cc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC
Confidence 999998642 21 00 137899999999988 7888999999999999865 32211121 1356788888887633
Q ss_pred cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 273 ~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+..+|..|+..+.+++....+.... .....-+++.+...+..++.+++..++.++.
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~ 242 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDK----ESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTS----HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5679999999999876321000000 0011124667777777889999999999987
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00025 Score=74.76 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-HHHHHHHHcCcHHHHHHhhc
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVK 226 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp-~~Q~~~le~G~lp~Ll~LL~ 226 (363)
..|..|...|..+++... ..+.. ..++.+...|++++..+|..|++++|.++...+ +.-...+ ...+|.|+..++
T Consensus 343 ~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~ 418 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK 418 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC
Confidence 345566666666554332 11211 245555677888999999999999999998654 3222222 358999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcccH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhc----------
Q 017926 227 SSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN---------- 294 (363)
Q Consensus 227 s~~~~v~~kAL~ALSsLiR~~~~a~--~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~---------- 294 (363)
+++..+|..|+++|+.++...++.. ..+. ...++.|...+.++ .++|..+++++.+++....+.
T Consensus 419 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~ 494 (876)
T 1qgr_A 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEP 494 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 9888999999999999998765421 1111 24466777777663 678999999999998642100
Q ss_pred CCCCcchhHHhCCcHHHHHHhccCC---ChhHHHHHHHHHHh
Q 017926 295 MHKVEPPLFRDRFFLKSVVDLTASA---DLDLQEKVFLEHVF 333 (363)
Q Consensus 295 ~~~~~~~~l~~~g~v~~Lv~lL~~~---d~~lqE~al~aL~~ 333 (363)
......+.+ ..+++.|..++... +..++..++.++..
T Consensus 495 ~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~ 534 (876)
T 1qgr_A 495 ATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLME 534 (876)
T ss_dssp CCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHH
T ss_pred cchhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHH
Confidence 001123333 35778888888764 35777778777763
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00044 Score=62.58 Aligned_cols=146 Identities=8% Similarity=0.089 Sum_probs=110.1
Q ss_pred HHHHHHHHHhh-cCCCCHHHHHHHHHHHHHcccCCCchhhHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChH
Q 017926 131 QLIQIAIDDLN-NSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (363)
Q Consensus 131 ~lmk~al~~L~-~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~--lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~ 207 (363)
+++......+. + .+...+..|+..+..++.... ..|.. -.-+++|+..+.+.++.+|..|+.+|.+++.+.+
T Consensus 56 ~i~~~L~~~l~kd--~~~~V~~~a~~~l~~la~~l~--~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~- 130 (242)
T 2qk2_A 56 ALVSALKKVITKD--SNVVLVAMAGKCLALLAKGLA--KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS- 130 (242)
T ss_dssp HHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-
Confidence 55555555563 4 366788899999999886542 23332 2368888999999999999999999999998654
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc--HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 017926 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG--QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a--~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~ 285 (363)
.. ..+|.|+..+++.+..+|..++..|+.++..+.+. ....+ ..-++.|..+|.+. +..+|..|..++.
T Consensus 131 ~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 131 LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEP--DPTVRDSSAEALG 201 (242)
T ss_dssp HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHHH
T ss_pred HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHHH
Confidence 11 36888999999988999999999999987765332 12222 25678899999876 5679999999999
Q ss_pred HHhhh
Q 017926 286 DLAKC 290 (363)
Q Consensus 286 ~L~~~ 290 (363)
.++..
T Consensus 202 ~l~~~ 206 (242)
T 2qk2_A 202 TLIKL 206 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00015 Score=76.24 Aligned_cols=191 Identities=13% Similarity=0.131 Sum_probs=126.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchh-hHHhcCCHHHHHHhcCC---------------CCHHHHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNH---------------PDTDIRKIS 194 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn-~l~~lGgl~~Li~lL~s---------------~~~~Ir~~A 194 (363)
.+|...+..+.+.+.+...|..+++.+..++....... .+. -..+++++..|.. ....+|..+
T Consensus 498 ~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 576 (861)
T 2bpt_A 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576 (861)
T ss_dssp HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence 45666666666544445667778888888877654321 111 1345666666542 246789999
Q ss_pred HHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCcc
Q 017926 195 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 273 (363)
Q Consensus 195 a~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~ 273 (363)
+.+|+++++.-+..-..++ ...++.++.++++.+. .++..++.++++++.........++. .-++.|...+.++ +
T Consensus 577 ~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~--~ 652 (861)
T 2bpt_A 577 LTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV--D 652 (861)
T ss_dssp HHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT--T
T ss_pred HHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc--c
Confidence 9999999986553100111 2568888888988766 78889999999998765443333332 3567888888665 4
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHH
Q 017926 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHV 332 (363)
Q Consensus 274 ~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~ 332 (363)
..+|..++.++..++.. .++...+.+ ..+++.+...+..+ +.++++.++.++.
T Consensus 653 ~~vr~~a~~~l~~l~~~----~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 653 SPVSITAVGFIADISNS----LEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp SHHHHHHHHHHHHHHHH----TGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 45899999999999863 222222222 35677788888765 4889999999987
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0002 Score=74.49 Aligned_cols=174 Identities=12% Similarity=0.039 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
++-.+..|+..|..+... ++.. ..++++..+|+++++.||..|+.+++.+...+|+.-+ +.++.|.++|
T Consensus 120 n~~vr~lAL~~L~~i~~~-----~~~~-~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL 188 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGSS-----EMCR-DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL 188 (618)
T ss_dssp SSHHHHHHHHHHHHHCCH-----HHHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST
T ss_pred CHhHHHHHHHHHHhcCCH-----HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh
Confidence 556788888888876521 2221 3467888999999999999999999999998886432 6889999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcC-------------CCccHHHHHHHHHHHHHHhhhhh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-------------SSFEIRLHRKAVSLVGDLAKCQL 292 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s-------------~~~~~klr~kA~~lL~~L~~~~~ 292 (363)
.+.++.++..|+.+|+.++.+++.....|. .-++.+..+|.+ ...++-+|.+++.++..++....
T Consensus 189 ~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~ 266 (618)
T 1w63_A 189 NEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD 266 (618)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred CCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence 998899999999999999887654333333 234444444432 01245667777777776664200
Q ss_pred h--------------cCCC---Cc----------------chhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 293 E--------------NMHK---VE----------------PPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 293 ~--------------~~~~---~~----------------~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
+ ..+. .. .+.+. ...+..|..+|.+.|+++|..++.+|..
T Consensus 267 ~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~ 339 (618)
T 1w63_A 267 DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR-VLAINILGRFLLNNDKNIRYVALTSLLK 339 (618)
T ss_dssp HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 0 0000 00 00111 1356677788888888999988888873
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0019 Score=67.98 Aligned_cols=194 Identities=13% Similarity=0.075 Sum_probs=130.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCch--hhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChH
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA--n~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~ 207 (363)
..++...+..+.+++.+.+.|..|+..|..+++.+... ........++.+..++++++.++|..|+.+++.++...++
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34555566666665446788999999998877643210 1111111366667778888999999999999999998776
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc-----------------HHHHHh---cCcHHHHHHhh
Q 017926 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----------------QEMFYV---EAGDLMLQDIL 267 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a-----------------~~~f~~---~gG~~~L~~lL 267 (363)
.-...+....++.++..+.+.++.++..|+..++.+++..... ...+.. ..-++.+...+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 5344444578999999888888899999999999988642100 000111 12245566666
Q ss_pred cCC-----CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 268 GNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 268 ~s~-----~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
... ..+.++|..|..++..|+... .+ .+. ..+++.+...+.+.+..+|+.++.++.
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~----~~----~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~ 391 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCC----ED----DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFG 391 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHH----GG----GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHC----cH----hhH-HHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 421 123457888999999998632 11 122 256777888888889999999999988
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0025 Score=67.02 Aligned_cols=199 Identities=12% Similarity=-0.010 Sum_probs=131.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCch--hhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA--n~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~ 208 (363)
.++...+..+.+++.+.+.|..|+..+..+++.++.. ........++.|..+++++++.+|..|+.+++.++...|..
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666557888999999998876544311 00011113555667778899999999999999999877653
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-----------------cHHHHHhcCcHHHHHHhhcCCC
Q 017926 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-----------------GQEMFYVEAGDLMLQDILGNSS 271 (363)
Q Consensus 209 Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~-----------------a~~~f~~~gG~~~L~~lL~s~~ 271 (363)
-...+....++.++..+.+.+..++..|+..++.+++.... ....++ ...++.++..|....
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQN 337 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 22223336778888888888889999999999998875211 011111 234667777776421
Q ss_pred -----ccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcccccCch
Q 017926 272 -----FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGLVFCTCP 342 (363)
Q Consensus 272 -----~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~~~~~~~ 342 (363)
.+..+|..+..++..++... .+. +. ..+++.+.+.+.+.+...++.++.++. .+...|.
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~----~~~----~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~---~i~~~~~ 401 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNC----GNH----IL-EPVLEFVEQNITADNWRNREAAVMAFG---SIMDGPD 401 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHH----GGG----GH-HHHHHHHHHHTTCSSHHHHHHHHHHHH---HTSSSSC
T ss_pred cccccccCcHHHHHHHHHHHHHHHc----cHh----HH-HHHHHHHHHHcCCCChhHHHHHHHHHH---HHHcCCC
Confidence 12368888999999998632 111 11 246677788888889999999999988 4444443
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0034 Score=65.42 Aligned_cols=163 Identities=14% Similarity=0.019 Sum_probs=122.1
Q ss_pred CCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 143 STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 143 ~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
+..+...|..++..+.++.-.-. +. ..|+..+++++.+++..+|..+--.+...+..+|+.-.. ++..+.
T Consensus 48 ~~~~~~~k~~~l~Kli~l~~~G~---d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~ 117 (621)
T 2vgl_A 48 KALDGYSKKKYVCKLLFIFLLGH---DI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIK 117 (621)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHSC---CC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC---CC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHH
Confidence 34567778777777776533211 11 247899999999999999999999999999988754322 356777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh--cCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 300 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL--~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~ 300 (363)
+=+.++++-++.-|+.+||++. .+. +.+ .-.+.+..++ .+. +..+|++|+..+..+... +++..
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~--~~e----~~~-~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~-----~p~~~ 183 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVG--SRE----MAE-AFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRT-----SPDLV 183 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHC--CHH----HHH-HHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHH-----CGGGC
T ss_pred HhcCCCCHHHHHHHHHHhhccC--CHH----HHH-HHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHh-----Chhhc
Confidence 7778888889999999999993 232 222 3446777888 444 678999999999999862 33322
Q ss_pred hhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 301 PLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 301 ~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+ ..++++.+.++|...|+.++..|+.++.
T Consensus 184 ~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~ 212 (621)
T 2vgl_A 184 P---MGDWTSRVVHLLNDQHLGVVTAATSLIT 212 (621)
T ss_dssp C---CCSCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred C---chhHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 2 2589999999998889999999988876
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0036 Score=58.06 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=114.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~ 255 (363)
+..|+.+|...|+.++.+|..+|..+...-|..-....=...+|.++.++++.+..+..+|+.+|..++.+.|..-+.|.
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~ 114 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL 114 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 45566788888999999999999999987655555544457899999999999999999999999999999998888887
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhc
Q 017926 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCG 335 (363)
Q Consensus 256 ~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~ 335 (363)
.. ...|..++.++ +.-++.-|+-.+..|-- .. . ..+++..+..++.+.|..++..++.++..-+
T Consensus 115 Kl--~~aL~dlik~~--~~il~~eaae~Lgklkv-----~~--~-----~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 115 KA--AKTLVSLLESP--DDMMRIETIDVLSKLQP-----LE--D-----SKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HH--HHHHHHHTTSC--CHHHHHHHHHHHHHCCB-----SC--C-----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HH--HHHHHHHhcCC--CchHHHHHHHHhCcCCc-----cc--c-----hHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 64 45777888866 45577888887777721 11 1 2456778888888889999999999988433
Q ss_pred c
Q 017926 336 L 336 (363)
Q Consensus 336 ~ 336 (363)
.
T Consensus 179 ~ 179 (265)
T 3b2a_A 179 N 179 (265)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.013 Score=57.38 Aligned_cols=180 Identities=10% Similarity=0.045 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp 206 (363)
++....++|+ ..++++..++..+..++..+.++.-.-+.=....-...+..+++++.+++..+|...--.+-.++..++
T Consensus 22 ~~k~~v~qe~-r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~ 100 (355)
T 3tjz_B 22 LEKSAVLQEA-RVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE 100 (355)
T ss_dssp CCHHHHHHHG-GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS
T ss_pred chHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH
Confidence 3445555563 566665555555455666666554433221111112345566777777787887777777777665432
Q ss_pred HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 207 ~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
+ .+ =+...|.+=++++++-+|..|+.++|+|.- +.-.+. -...+..+|.+. ++.+|++|+.....
T Consensus 101 e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~--~pyVRk~A~l~~~k 165 (355)
T 3tjz_B 101 D---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDK--VPSVSSSALVSSLH 165 (355)
T ss_dssp C---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHH
T ss_pred H---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence 2 12 245666666667777777777888877742 222222 234567777766 55677777777777
Q ss_pred HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
|.. .. . .+++ +|+..+-+++...++-++-+|+.+|.
T Consensus 166 L~~-----~~---p-e~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ 201 (355)
T 3tjz_B 166 LLK-----CS---F-DVVK-RWVNEAQEAASSDNIMVQYHALGLLY 201 (355)
T ss_dssp HTT-----TC---H-HHHH-TTHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred Hhc-----cC---H-HHHH-HHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 763 12 2 2232 57777777777777777766666655
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0082 Score=55.30 Aligned_cols=175 Identities=9% Similarity=0.097 Sum_probs=120.3
Q ss_pred HhHHHHHHHHH-HcCC-------CCH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCC--chh-hHHhcCCHHHH
Q 017926 112 KRQMEIKELME-KLKT-------PSD-AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NAN-DLSKLGGLSVL 179 (363)
Q Consensus 112 ~r~~~Lkeal~-~l~~-------~~d-~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iD--nAn-~l~~lGgl~~L 179 (363)
+|++-+.++.. .+.+ ..+ .+++....+.+.+ +.+...+..|+..+..+++... .-. .+.. -.+|++
T Consensus 32 eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~-D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~l 109 (249)
T 2qk1_A 32 DRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK-DANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTPL 109 (249)
T ss_dssp HHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHHH
Confidence 46666666666 4421 123 4566666666632 3356678888999998886442 111 2222 258899
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh---
Q 017926 180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--- 256 (363)
Q Consensus 180 i~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~--- 256 (363)
+..+.+..+.||..+..++-+++.+-+.....-.=...++.|+..|++.+..+|..++..|+.++...+..-..|..
T Consensus 110 l~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~ 189 (249)
T 2qk1_A 110 LDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK 189 (249)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 99999989999999999999888754211100000136788999999988899999999999999876643233332
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 257 ~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
-.-++.|..++.+. +..+|..|..++..++..
T Consensus 190 ~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 190 DEVVPIVIQIVNDT--QPAIRTIGFESFAILIKI 221 (249)
T ss_dssp TTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH
Confidence 35678999999876 667999999999999864
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.016 Score=53.62 Aligned_cols=177 Identities=12% Similarity=-0.011 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHHHHcccCCCc----hhhHHhcCCHHHH-HHhcCCCCHHHHHHHHHHHHHHhccChH-----HHHHHHH
Q 017926 145 LSLEDSQRALQELLILVEPIDN----ANDLSKLGGLSVL-VGQLNHPDTDIRKISAWILGKASQNNPL-----VQKQVLE 214 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDn----An~l~~lGgl~~L-i~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~-----~Q~~~le 214 (363)
..=..|..|++.|..++..... ...+...+.+..+ -..+...|..+...++.+|..++..-.. ......-
T Consensus 21 k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~ 100 (278)
T 4ffb_C 21 KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLI 100 (278)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHH
Confidence 3557889999999888765321 1122234444444 4678899999999999999998864221 1111222
Q ss_pred cCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhh
Q 017926 215 LGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (363)
Q Consensus 215 ~G~lp~Ll~-LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~ 293 (363)
...+|.|+. .+.+....++.+|+.++..++....+... + ++.+...+++. +++++..++..|..+....
T Consensus 101 ~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-~-----~e~l~~~l~~K--npkv~~~~l~~l~~~l~~f-- 170 (278)
T 4ffb_C 101 STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-S-----VELVIPFFEKK--LPKLIAAAANCVYELMAAF-- 170 (278)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-H-----HHHHGGGGGCS--CHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-H-----HHHHHHHHhcc--CHHHHHHHHHHHHHHHHHh--
Confidence 356888885 57888888898999988888754332221 1 35566667776 6789999999998887642
Q ss_pred cCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+.........-..+++.+..+|.+.|.++|+.|..++.
T Consensus 171 -g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 171 -GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIV 208 (278)
T ss_dssp -TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred -CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11111111111246677888899999999999999876
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.017 Score=60.17 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
.+.+.|..+.-.+..+.+.- .++.-+ .+..+.+-|+++++-+|..|..+||++. +|+.-+ ..+|.+.++
T Consensus 86 ~~~~~Krl~YL~l~~~~~~~---~e~~~L-~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~ 154 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLVNSN---SELIRL-INNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKI 154 (621)
T ss_dssp SCHHHHHHHHHHHHHSCCCC---HHHHHH-HHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHccCC---cHHHHH-HHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHH
Confidence 35677877777777776542 222211 2445566778999999999999999996 455333 457889999
Q ss_pred h--cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 225 V--KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 225 L--~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+ .+.++-||.+|+.|+..+.+.+|.... ..+-++.|..+|.++ +..++..|+.++..++.
T Consensus 155 l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 155 LVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQ--HLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCS--CHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCC--CccHHHHHHHHHHHHHH
Confidence 9 778889999999999999998775442 136689999999765 66799999999999986
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.017 Score=55.94 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=113.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhc-
Q 017926 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE- 257 (363)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~- 257 (363)
+++-|.+.+..-+..+..-|..+.|..+..-..|++.+|+..|+++..+.+...+.-+|.|+..+.- |..+.+-++..
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~~ 201 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHCH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCCH
Confidence 4455556677778899999999777767777789999999999999999888899999999999985 67788777764
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh--------C--CcHHHHHHhcc---CCChhHH
Q 017926 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--------R--FFLKSVVDLTA---SADLDLQ 324 (363)
Q Consensus 258 gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~--------~--g~v~~Lv~lL~---~~d~~lq 324 (363)
..+..|..++.+. +..+.+.|+.+|..++.. .+.....+.+ . .-...|+.+|+ +.|.+++
T Consensus 202 ~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~-----se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 202 DTIQWLYTLCASL--SRLVVKTALKLLLVFVEY-----SENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred HHHHHHHHHHcCc--cHHHHHHHHHHHHHHHcc-----CcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 5788889888864 677888899999999863 2222222221 1 23679999997 6799999
Q ss_pred HHHHHHHH
Q 017926 325 EKVFLEHV 332 (363)
Q Consensus 325 E~al~aL~ 332 (363)
..++.-+.
T Consensus 275 ~~amtLIN 282 (339)
T 3dad_A 275 VYTVTLIN 282 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877655
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.12 Score=50.69 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=114.7
Q ss_pred HHHHHHHHHccc--CCCchhhHHhcCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhccChHHHHHHHHc-C
Q 017926 151 QRALQELLILVE--PIDNANDLSKLGGLSVLVGQLN-----------HPDTDIRKISAWILGKASQNNPLVQKQVLEL-G 216 (363)
Q Consensus 151 ~~AL~~L~~Lve--~iDnAn~l~~lGgl~~Li~lL~-----------s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G 216 (363)
...|..|.-.+. +++.-..|. .+|+..|+..|. ..+..++..+..||..+. ||...-+.++++ .
T Consensus 85 ~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~ 162 (383)
T 3eg5_B 85 LSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEE 162 (383)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChH
Confidence 345666665444 457788997 899999998874 124578888999999887 666666777766 7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-cc-HHHHHh----------cCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFYV----------EAGDLMLQDILGNSSFEIRLHRKAVSLV 284 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~-~a-~~~f~~----------~gG~~~L~~lL~s~~~~~klr~kA~~lL 284 (363)
.+..|...|.+....++.-++--|+.+|--.. .+ ...+++ ..-+..++..|.+. .+..++..+..+|
T Consensus 163 ~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lI 241 (383)
T 3eg5_B 163 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLI 241 (383)
T ss_dssp HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHH
Confidence 89999999999888888878888877765432 22 333322 23478889999875 3677889999999
Q ss_pred HHHhhhhhhcCCC----CcchhHHhCCcHHHHHHhccC-CChhHH
Q 017926 285 GDLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTAS-ADLDLQ 324 (363)
Q Consensus 285 ~~L~~~~~~~~~~----~~~~~l~~~g~v~~Lv~lL~~-~d~~lq 324 (363)
..++... .+- ..+..|...|+.+.+-. |+. +++++.
T Consensus 242 N~li~~~---~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L~ 282 (383)
T 3eg5_B 242 NALITPA---EELDFRVHIRSELMRLGLHQVLQE-LREIENEDMK 282 (383)
T ss_dssp HHHHTTC---CCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHHH
T ss_pred HHHHcCC---CCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhHH
Confidence 9998631 111 23455667788776665 444 354444
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.12 Score=48.45 Aligned_cols=166 Identities=12% Similarity=0.014 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhc----cChHHHHHHHHcCcHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQ----NNPLVQKQVLELGALSK 220 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~~Lgt~aq----NNp~~Q~~~le~G~lp~ 220 (363)
+...+..+++.|...+++. ....+..+..+-.-+. -+.+++..+-..+..+|..+.. .+....++-. .-.+|.
T Consensus 59 d~k~~~~ale~L~~~l~~~-~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~ 136 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTS-PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPY 136 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHC-HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHH
Confidence 5688888888888876642 1222222222221111 2236788898899888887753 2222222111 236899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 017926 221 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 300 (363)
Q Consensus 221 Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~ 300 (363)
|+.-+.+..+.+|.++-..+-.+..-+++. .-++.+...+++. +.|.|...+..+.++.... ...
T Consensus 137 LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~----G~~-- 201 (266)
T 2of3_A 137 LLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSK--NARQRSECLLVIEYYITNA----GIS-- 201 (266)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH----CSG--
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhc----CCC--
Confidence 999998888888766555443333223331 1345677788887 5789999999999998642 111
Q ss_pred hhHHhCCcH---HHHHHhccCCChhHHHHHHHHHH
Q 017926 301 PLFRDRFFL---KSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 301 ~~l~~~g~v---~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
....+ +.+..++...|..+|+.|+.|+.
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLV 232 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 13468 99999999999999999999988
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.18 Score=45.44 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=103.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~ 255 (363)
+|.+..-+.-.++.+|..-+.+|+.++.+||..-.. .+.-+..|+.+.+..-+..|+.-|+++-.|++....
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~--- 180 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN--- 180 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG---
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC---
Confidence 444445556679999999999999999999986654 456788999988877788999999998766554332
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhc
Q 017926 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCG 335 (363)
Q Consensus 256 ~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~ 335 (363)
-=++.|..+|.++ +.-+|..|+-.+.+|+. .++..++ ++...++-+...+..++.++-.+|....
T Consensus 181 --PfLprL~aLL~D~--deiVRaSaVEtL~~lA~-----~npklRk------ii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 181 --PFLPRIINLLHDG--DEIVRASAVEALVHLAT-----LNDKLRK------VVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp --GGHHHHHGGGGCS--SHHHHHHHHHHHHHHHT-----SCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred --cchHHHHHHHcCc--chhhhHHHHHHHHHHHH-----cCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3467888899987 67799999999999995 3433332 3444556667778888888888877444
Q ss_pred ccc
Q 017926 336 LVF 338 (363)
Q Consensus 336 ~~~ 338 (363)
+.+
T Consensus 246 l~e 248 (253)
T 2db0_A 246 LLE 248 (253)
T ss_dssp HC-
T ss_pred HHh
Confidence 433
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.48 Score=42.64 Aligned_cols=185 Identities=12% Similarity=0.139 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
+.+++.+..|.+.-.+ .+..|+..+..+.+...-+ +. -.+.-|+.++ +++.-.+-..-+..+|.++.-||+.-
T Consensus 32 ~~l~~lI~~LDDDlwt--V~kNAl~vi~~i~~~~~el---~e-pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 32 SVLKKLIELLDDDLWT--VVKNAISIIMVIAKTREDL---YE-PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHTTCSCHH--HHHHHHHHHHHHHTTCGGG---HH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhccHHHH--HHHhHHHHHHHHHHHhHHH---HH-HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 3445555555443222 2344555555555443211 10 0122334454 46677777788999999999999755
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
. +.+|.|..-..-.++..+..--|+|.-|.|.||..... .+.-+..++.+++.. =|.-|+.+|..|..
T Consensus 106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~--Dkl~aLnFi~alGe 173 (253)
T 2db0_A 106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNRE--DKLTALNFIEAMGE 173 (253)
T ss_dssp H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHH--HHHHHHHHHHTCCT
T ss_pred H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChH--HHHHHHHHHHHHhc
Confidence 4 46788888888889999999999999999999875533 345567778877433 35567777776653
Q ss_pred hhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcccccCchhhhhH
Q 017926 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGLVFCTCPCIVRG 347 (363)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~~~~~~~~~~r~ 347 (363)
. ....+ .-++|.|..+|..+|.-++-.+..+|...+ ...+. +|.
T Consensus 174 n--------~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA---~~npk-lRk 217 (253)
T 2db0_A 174 N--------SFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLA---TLNDK-LRK 217 (253)
T ss_dssp T--------THHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHH---TSCHH-HHH
T ss_pred c--------Ccccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHH---HcCHH-HHH
Confidence 2 12222 357899999999999999999999998444 33343 664
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.35 Score=45.18 Aligned_cols=199 Identities=17% Similarity=0.147 Sum_probs=134.1
Q ss_pred hHHHHhhHhhcCCCCCcccchhcccCCCHHHHHHhHHHHHH----HHHHcCCCCHHHHHHHHHHHhhc---CCCCH--HH
Q 017926 79 IDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN---STLSL--ED 149 (363)
Q Consensus 79 l~~LL~wsi~~s~~~~~~~~~~~~~~~~~e~l~~r~~~Lke----al~~l~~~~d~~lmk~al~~L~~---~~~s~--e~ 149 (363)
++.+.+|-.+-.+|+.-..+-. +|-|||+-..+ ++.++| .-+.+++|.+.+.-. +..+. -+
T Consensus 2 ~~~i~qli~~L~~p~~Re~AL~--------eLsk~Re~~~~La~~LW~S~G--tia~LLQEIisiYp~lspp~Lt~~~Sn 71 (268)
T 2fv2_A 2 REKIYQWINELSSPETRENALL--------ELSKKRESVPDLAPMLWHSFG--TIAALLQEIVNIYPSINPPTLTAHQSN 71 (268)
T ss_dssp CHHHHHHHHHTSSTTTHHHHHH--------HHHHHTTTCTTHHHHHHHSTT--HHHHHHHHHHHTGGGBTTBCCCHHHHH
T ss_pred hHHHHHHHHHhcCchhHHHHHH--------HHHHhhhccccHHHHHHhccC--HHHHHHHHHHHHcccCCCcccCHHHHh
Confidence 4678889988888765211111 12223332222 344433 356788888887643 23332 23
Q ss_pred H-HHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCC-----CHHHHHHHHHHHHHHhc-cChHHHHHHHHcCcHHHHH
Q 017926 150 S-QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 150 k-~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~-----~~~Ir~~Aa~~Lgt~aq-NNp~~Q~~~le~G~lp~Ll 222 (363)
| ..||--|...+.+.|....|.+.+---.|..+|+.. .+-+|-.+..+||.+++ +++++-..+++.+.+|..+
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 3 556666677778889999999987666777888653 36899999999999998 5788888889999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCccc-------HHHHHhcC-cHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNLAG-------QEMFYVEA-GDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~~a-------~~~f~~~g-G~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+.+..+++--+.-|.|-+.-|+-+. .+ .+.|...+ -+..++.-+... .+.++-+.+......|+.
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKE-PSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTT
T ss_pred HHHhhccHHHHHHHHHHHHHHhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhc
Confidence 9999999877888888888877543 33 24455433 233333333332 367888888887777764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.3 Score=53.63 Aligned_cols=185 Identities=12% Similarity=0.143 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHH-hc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--cC
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KL-GGLSVLVGQLNHPDTDIRKISAWILGKASQ--NN 205 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~-~l-Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq--NN 205 (363)
..++...+..+.+.. .=..|..||+.+..+++.. ...+. .+ ..+|.+-.++....++|+..|..++..+|+ .|
T Consensus 132 ~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n 208 (986)
T 2iw3_A 132 KALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208 (986)
T ss_dssp HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC
Confidence 344555666664432 4578999999999999854 22222 12 356666788888999999999999998887 45
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 017926 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (363)
Q Consensus 206 p~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~ 285 (363)
..+. ..+|.|++.+.+++. .-+++..||+.. |......=.=+=-+++|.+.|... ...+++|++-.+.
T Consensus 209 ~d~~------~~~~~~~~~~~~p~~--~~~~~~~l~~~t--fv~~v~~~~l~~~~p~l~r~l~~~--~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 209 KDIE------RFIPSLIQCIADPTE--VPETVHLLGATT--FVAEVTPATLSIMVPLLSRGLNER--ETGIKRKSAVIID 276 (986)
T ss_dssp TTTG------GGHHHHHHHHHCTTH--HHHHHHHHTTCC--CCSCCCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHH
T ss_pred cchh------hhHHHHHHHhcChhh--hHHHHHHhhcCe--eEeeecchhHHHHHHHHHhhhccC--cchhheeeEEEEc
Confidence 5443 468999999998753 456788888742 222111100011246666667765 3457899999999
Q ss_pred HHhhhhhhcCCCCcchhHHhCCcHHHHHHhccC-CChhHHHHHHHHHHh
Q 017926 286 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKVFLEHVF 333 (363)
Q Consensus 286 ~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~~lqE~al~aL~~ 333 (363)
|||.-. .+|.....|. ..++|.|-..... .|+++||.+.+|+..
T Consensus 277 n~~~lv---~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 277 NMCKLV---EDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKT 321 (986)
T ss_dssp HHHTTC---CCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred chhhhc---CCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHH
Confidence 999632 2333333332 4566666665554 499999999888773
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.09 E-value=2.2 Score=41.45 Aligned_cols=157 Identities=8% Similarity=0.023 Sum_probs=94.8
Q ss_pred HhHHHHHHHHHHcC-CCC-HH----HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC
Q 017926 112 KRQMEIKELMEKLK-TPS-DA----QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH 185 (363)
Q Consensus 112 ~r~~~Lkeal~~l~-~~~-d~----~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s 185 (363)
+.++-+++++-.+. |.+ .. .+.-..++.+.. .+.+.|.-..--+..+....+.+ | =....|.+-+++
T Consensus 43 kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s--~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~ 115 (355)
T 3tjz_B 43 KCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQS--NDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTG 115 (355)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCC
Confidence 45667777766542 322 11 122222333433 35566655555555555442221 1 135556677778
Q ss_pred CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHH
Q 017926 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~ 265 (363)
+++-+|..|..++|.+.. |+.-+. ..+.+-+.+.+.++.||.+|+.+...+++.+|+..+ +.++-+.+
T Consensus 116 ~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ 183 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQE 183 (355)
T ss_dssp SCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHH
T ss_pred CcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHH
Confidence 888888888888888864 323222 356677777787888888888888888877765432 45666777
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhh
Q 017926 266 ILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 266 lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
++.+. +.-++-.|..++..+..
T Consensus 184 ll~d~--n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 184 AASSD--NIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HTTCS--SHHHHHHHHHHHHHHHT
T ss_pred HhcCC--CccHHHHHHHHHHHHHh
Confidence 77665 34566677777776653
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.062 Score=54.41 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=64.9
Q ss_pred CHHHHHHhcCC----------CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 017926 175 GLSVLVGQLNH----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (363)
Q Consensus 175 gl~~Li~lL~s----------~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi 244 (363)
.+..|+.+|.+ .++.+.+-||.=||..++..|..+..+-+.|+=..+++|+.+++++||..||.|+.-++
T Consensus 396 llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 396 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45677888863 47889999999999999999999998889999999999999999999999999999888
Q ss_pred cCC
Q 017926 245 RNN 247 (363)
Q Consensus 245 R~~ 247 (363)
.++
T Consensus 476 ~~~ 478 (480)
T 1ho8_A 476 GYT 478 (480)
T ss_dssp HHS
T ss_pred Hhc
Confidence 764
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.43 Score=43.33 Aligned_cols=157 Identities=17% Similarity=0.102 Sum_probs=104.4
Q ss_pred CCCchhhHHhcCCHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhccChHHHHHHHHc-CcHHHHHHhhcCCCH
Q 017926 163 PIDNANDLSKLGGLSVLVGQLNH----P-------DTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFV 230 (363)
Q Consensus 163 ~iDnAn~l~~lGgl~~Li~lL~s----~-------~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G~lp~Ll~LL~s~~~ 230 (363)
+++.-..| ..||+..|+.+|.. . +..++..+..||..+. ||...-+.+++. +++..|...|.++..
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 45667777 46898888887742 1 4577888999998887 566666667665 789999999998888
Q ss_pred HHHHHHHHHHHHHhcCCc-cc-HHHHHh----------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCC-
Q 017926 231 EEAVKALYTVSSLIRNNL-AG-QEMFYV----------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK- 297 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~-~a-~~~f~~----------~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~- 297 (363)
.++..++--|+.+|--.. .+ ...+.+ ..-+..+++.+++. .+..++..+..+|..|+... .+.
T Consensus 111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~~~m~lIN~li~~~---~dl~ 186 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPA---EELD 186 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHTTC---CCHH
T ss_pred hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC-ChHHHHHHHHHHHHHHHCCC---CCHH
Confidence 888777766666654332 24 333322 12356788888754 36778999999999998631 111
Q ss_pred ---CcchhHHhCCcHHHHHHhccCCChhHHH
Q 017926 298 ---VEPPLFRDRFFLKSVVDLTASADLDLQE 325 (363)
Q Consensus 298 ---~~~~~l~~~g~v~~Lv~lL~~~d~~lqE 325 (363)
..+..|...|+.+.+-.+=...++++..
T Consensus 187 ~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 187 FRVHIRSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence 2345566778876665554444555443
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.019 Score=58.21 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHcccCCCchhhHH-hcCCHHHHHHhcCCC
Q 017926 116 EIKELMEKLKTPSDAQLIQIAIDDLNNS--------TLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHP 186 (363)
Q Consensus 116 ~Lkeal~~l~~~~d~~lmk~al~~L~~~--------~~s~e~k~~AL~~L~~Lve~iDnAn~l~-~lGgl~~Li~lL~s~ 186 (363)
|.+.+ ..|.. ++.+++|..++.|... +.++.....|+.++.++|....+.+.+. ++||=..+.++++|+
T Consensus 382 W~ENa-~kf~e-~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~ 459 (480)
T 1ho8_A 382 WSDNI-DEFKK-DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS 459 (480)
T ss_dssp HHHHS-GGGSS-GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS
T ss_pred HHHHH-HHHHh-cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC
Confidence 44444 45544 6899999999999742 2345567889999999999887766554 688888888999999
Q ss_pred CHHHHHHHHHHHHHHhccC
Q 017926 187 DTDIRKISAWILGKASQNN 205 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNN 205 (363)
|++||..|..|+..+..+|
T Consensus 460 d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 460 DSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp SHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999887654
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.48 E-value=1.9 Score=40.05 Aligned_cols=133 Identities=9% Similarity=0.079 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
+.++|+..|....+++-+.|.+ -+- .-++.++.+-.+++.++|...+..|..++...++... ..++.|..|+
T Consensus 28 ~~~~kl~~L~qa~el~~~~dp~-ll~--~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll 99 (257)
T 3gs3_A 28 SPSTKCELLAKVQETVLGSCAE-LAE--EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL 99 (257)
T ss_dssp CHHHHHHHHHHHHHHHTTTTGG-GHH--HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHccCHh-HHH--HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3479999999999977666533 222 2467778877778999999999999999976665433 4678899999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc--------H-------HHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------D-------LMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG--------~-------~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.++++.+..+++.+.+++-+ ...+.+...++ | ..+...+.+. +..+|..+.-++..+...
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~---~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~--n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYK---NGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE--NDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHH---HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS--CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH---HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC--CcchHHHHHHHHHHHHHh
Confidence 98888888888888888743 23333333222 2 2344456665 577899999999888754
Q ss_pred h
Q 017926 291 Q 291 (363)
Q Consensus 291 ~ 291 (363)
|
T Consensus 175 q 175 (257)
T 3gs3_A 175 Q 175 (257)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.78 Score=42.81 Aligned_cols=194 Identities=16% Similarity=0.106 Sum_probs=120.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC-CchhhHHhc-CCHHHHHH-------hcCCCC----HHHH-HHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKL-GGLSVLVG-------QLNHPD----TDIR-KISAW 196 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnAn~l~~l-Ggl~~Li~-------lL~s~~----~~Ir-~~Aa~ 196 (363)
+.|.+.+..|.++ +.|+.|+.+|..--|+. |.|--+-.. |-+..|++ .|..+. ..-| ..|..
T Consensus 3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 4455666666665 45999999998877765 445555443 55555543 232221 2223 23333
Q ss_pred HHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCCcc-cHHHHHhcCcHHHHHHhhcCC
Q 017926 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 197 ~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~-----~~v~~kAL~ALSsLiR~~~~-a~~~f~~~gG~~~L~~lL~s~ 270 (363)
.+-.+| .||+.+..|++.+..--|...|+..+ +-+|..++.-|+++++...+ ...-+.+..-++...+.+...
T Consensus 79 LlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 79 LLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence 334444 58999999999987666667776544 23588999999999997544 444455678899999999887
Q ss_pred CccHHHHHHHHHHHHHHhhhh--hhcCCCCcchhHH-hCCcHHHHHHhcc-CCChhHHHHHHHHHH
Q 017926 271 SFEIRLHRKAVSLVGDLAKCQ--LENMHKVEPPLFR-DRFFLKSVVDLTA-SADLDLQEKVFLEHV 332 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~~~~--~~~~~~~~~~~l~-~~g~v~~Lv~lL~-~~d~~lqE~al~aL~ 332 (363)
+.-.|.-|.|.+..+.... +... -...++|. =..++..+|..+. .++..+..++.+|-.
T Consensus 158 --selSKtvAtfIlqKIL~dd~GL~Yi-C~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYl 220 (268)
T 2fv2_A 158 --SELSKTVATFILQKILLDDTGLAYI-CQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYL 220 (268)
T ss_dssp --CHHHHHHHHHHHHHHHHSHHHHHHH-TSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHhccchhHHHH-HccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4557889999998887521 0000 01122221 1234444555443 457788888888765
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.86 Score=49.92 Aligned_cols=115 Identities=12% Similarity=0.018 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHh
Q 017926 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKAS 202 (363)
Q Consensus 126 ~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~---~~~Ir~~Aa~~Lgt~a 202 (363)
||-+++.+.+|++..-++.++.+.|..|.+-|+.+=+.. ++|.....+|.++ ++.+|..|+.+|-+..
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I 71 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKV 71 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 456777888899877788888999999988888765554 3889999999653 7999999999999988
Q ss_pred ccChHH----HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC-Ccc
Q 017926 203 QNNPLV----QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN-NLA 249 (363)
Q Consensus 203 qNNp~~----Q~~~le~G~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR~-~~~ 249 (363)
+.-|.- +...++...+..+.+.-. .++..++.|...+++.++.. +|.
T Consensus 72 ~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~ 124 (980)
T 3ibv_A 72 REWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS 124 (980)
T ss_dssp HHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT
T ss_pred HhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 744444 556666666666666211 23456899999999998875 444
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=94.14 E-value=1.5 Score=48.17 Aligned_cols=152 Identities=13% Similarity=0.136 Sum_probs=108.0
Q ss_pred HHHHHHHHHcccCCCchh--hHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChHHHHHHHHcCcHHHHHHhhcC
Q 017926 151 QRALQELLILVEPIDNAN--DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS 227 (363)
Q Consensus 151 ~~AL~~L~~Lve~iDnAn--~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN-Np~~Q~~~le~G~lp~Ll~LL~s 227 (363)
+.|+..+..+++....+. .-.-++.++.++..+.+....||..|..++-+++++ ||..- ...+|.|+..+++
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~ 144 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVE 144 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcc
Confidence 777888888876553322 223347788889988888899999999999888885 55443 3468999999976
Q ss_pred CC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhC
Q 017926 228 SF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 306 (363)
Q Consensus 228 ~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~ 306 (363)
.. =..+..|+..|..++...+ .+-...--..++.+..++.+.+ ..++..|...+..+|... .+.+. .
T Consensus 145 ~~kw~~k~~~l~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~d~k--~~v~~~~~~~~~~~~~~~---~n~d~------~ 212 (986)
T 2iw3_A 145 TNKWQEKIAILAAFSAMVDAAK-DQVALRMPELIPVLSETMWDTK--KEVKAAATAAMTKATETV---DNKDI------E 212 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHTTCSS--HHHHHHHHHHHHHHGGGC---CCTTT------G
T ss_pred ccchHHHHHHHHHHHHHHHHhH-HHHHHhccchhcchHhhcccCc--HHHHHHHHHHHHHHHhcC---CCcch------h
Confidence 54 3568889999999997653 2222222467899999998863 458888888899888642 23332 2
Q ss_pred CcHHHHHHhccCC
Q 017926 307 FFLKSVVDLTASA 319 (363)
Q Consensus 307 g~v~~Lv~lL~~~ 319 (363)
.++|.|++++.++
T Consensus 213 ~~~~~~~~~~~~p 225 (986)
T 2iw3_A 213 RFIPSLIQCIADP 225 (986)
T ss_dssp GGHHHHHHHHHCT
T ss_pred hhHHHHHHHhcCh
Confidence 4567777777765
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=93.41 E-value=2.6 Score=41.14 Aligned_cols=157 Identities=17% Similarity=0.100 Sum_probs=103.5
Q ss_pred CCCchhhHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhccChHHHHHHHHc-CcHHHHHHhhcCCCH
Q 017926 163 PIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFV 230 (363)
Q Consensus 163 ~iDnAn~l~~lGgl~~Li~lL~s-----------~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G~lp~Ll~LL~s~~~ 230 (363)
+++.-..|. .+|+..|+.+|.. .+..+...+..||..+. ||...-+.++.. +++..|...|.+...
T Consensus 37 ~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~ 114 (386)
T 2bnx_A 37 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVP 114 (386)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred CcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 346667775 6888888877741 14577888999998887 555556666665 789999999998888
Q ss_pred HHHHHHHHHHHHHhcCCc-cc-HHHHHh----------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCC-
Q 017926 231 EEAVKALYTVSSLIRNNL-AG-QEMFYV----------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK- 297 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~-~a-~~~f~~----------~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~- 297 (363)
.++..++--|+.+|--.. .+ ...+++ ..=+..|+..+... .+..++..++.+|..|+... .+-
T Consensus 115 ~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~a~m~lIN~lv~~~---~dl~ 190 (386)
T 2bnx_A 115 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPA---EELD 190 (386)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHTTC---SCHH
T ss_pred hHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHHHHHHHHHHHHHHCCC---CCHH
Confidence 887777666666554332 23 332221 22466788888754 35678999999999998631 111
Q ss_pred ---CcchhHHhCCcHHHHHHhccCCChhHHH
Q 017926 298 ---VEPPLFRDRFFLKSVVDLTASADLDLQE 325 (363)
Q Consensus 298 ---~~~~~l~~~g~v~~Lv~lL~~~d~~lqE 325 (363)
..+..|...|+.+.+-.+=...++++..
T Consensus 191 ~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 191 FRVHIRSELMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence 2345667778877765554444555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.39 E-value=1.5 Score=48.07 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc-cCCCchhhHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhccC
Q 017926 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNN 205 (363)
Q Consensus 128 ~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnAn~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNN 205 (363)
.+...+++.+..+.+. .+.+.|..|...|..+. .+. ..++.++..| ++.++.+|..|++++|.++..|
T Consensus 574 Gn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp CCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Confidence 3456677777776643 35567777888887642 222 2456677644 6789999999999999999887
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc
Q 017926 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (363)
Q Consensus 206 p~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a 250 (363)
|. ..++..|..+.++.+..||..|+.||+-+.-++..+
T Consensus 644 ~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 644 GL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp CC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred Cc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 73 124677888888888999999999999988765554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.27 E-value=1.1 Score=48.88 Aligned_cols=101 Identities=5% Similarity=-0.006 Sum_probs=65.1
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 217 ALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 217 ~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
.+|.++.+|. +.++.+|..|.+||+-+.-+++. ...++.|..+++++ +..+|..|++.+.-+... .
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~g----t 678 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQ----Q 678 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTT----C
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcC----C
Confidence 4577776554 45677888888888888776653 12455777777765 667999999999988763 2
Q ss_pred CCCcchhHHhCCcHHHHHHhccC--CChhHHHHHHHHHH
Q 017926 296 HKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKVFLEHV 332 (363)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~--~d~~lqE~al~aL~ 332 (363)
++...+.+. .+.+.|...... .|...+=.+.-|.+
T Consensus 679 nna~~~rva--~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 679 TEKLNPQVA--DINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp CTTTCTTHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred ccccchHHH--HHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 333333332 355667777754 35656655555544
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=3.5 Score=40.50 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHH
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
-+.+-+.+....... .++|+..|..+.+++=+.|. .-+ -+-++.++.+-...+.+||...+..|..++...++..
T Consensus 24 ~~~v~~lln~A~~~~--~~~Kl~~L~q~~EL~l~~dp-sLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~ 98 (386)
T 3o2t_A 24 SERVVDLLNQAALIT--NDSKITVLKQVQELIINKDP-TLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL 98 (386)
T ss_dssp HHHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTCG-GGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhhhccC--hHHHHHHHHHHHHHHhccCH-HHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444432 25799999999997554443 122 2457888998888899999999999999997655443
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc--------HH-------HHHHhhcCCCccH
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------DL-------MLQDILGNSSFEI 274 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG--------~~-------~L~~lL~s~~~~~ 274 (363)
..+++.|..||.++++.+..+++.+.+++- +...+.++..++ |+ .++..+.+. +.
T Consensus 99 -----~~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~--n~ 168 (386)
T 3o2t_A 99 -----LKLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD--ND 168 (386)
T ss_dssp -----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS--SH
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC--Cc
Confidence 245788889998888888888888888874 333333333322 32 344445655 57
Q ss_pred HHHHHHHHHHHHHhhhh
Q 017926 275 RLHRKAVSLVGDLAKCQ 291 (363)
Q Consensus 275 klr~kA~~lL~~L~~~~ 291 (363)
.+|..++-++..++..|
T Consensus 169 GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 169 GIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHh
Confidence 78999999998887543
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=4.9 Score=38.77 Aligned_cols=184 Identities=14% Similarity=0.105 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHHHcccCC-Cc----hhhHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcH
Q 017926 145 LSLEDSQRALQELLILVEPI-DN----ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~i-Dn----An~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~l 218 (363)
.+.|.|..+...+..++..- +. ..-++. --..+.-++. .+++++--.+-.+|..|.. ++.+...++..+.+
T Consensus 90 L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRecir-~e~la~~iL~~~~f 166 (341)
T 1upk_A 90 IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECIR-HEPLAKIILWSEQF 166 (341)
T ss_dssp SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHHT-SHHHHHHHHHSGGG
T ss_pred CCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHHH-hHHHHHHHhccHHH
Confidence 35677777766666665543 21 111111 1111112221 2456777777778888876 67788888888899
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc---HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG---DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 219 p~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG---~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
..+.+.+..++-++...|...+-.++..|......|+..+= +.....+|.+++ --.|+.++-||+.|.... .
T Consensus 167 ~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N--YVTkRQSlKLLgelLldr---~ 241 (341)
T 1upk_A 167 YDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN--YVTKRQSLKLLGELLLDR---H 241 (341)
T ss_dssp GHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHSG---G
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc--chhHHHHHHHHHHHHhCc---h
Confidence 99999999988899999999999988888887888887552 466777888874 457999999999998631 2
Q ss_pred CCCcch-hHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 296 HKVEPP-LFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 296 ~~~~~~-~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
+..... .+-+..-++.++.+|+.....+|-.|-+......+
T Consensus 242 N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 242 NFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp GHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 222222 23345778999999999999999888887664444
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.45 E-value=1.7 Score=46.74 Aligned_cols=132 Identities=9% Similarity=0.121 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHcccCCCchh--hHHhcCCHHHHHHhcC--CCCHHHHHHHHHHHHHHhc---cChHHHHHHHHcCcH
Q 017926 146 SLEDSQRALQELLILVEPIDNAN--DLSKLGGLSVLVGQLN--HPDTDIRKISAWILGKASQ---NNPLVQKQVLELGAL 218 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn--~l~~lGgl~~Li~lL~--s~~~~Ir~~Aa~~Lgt~aq---NNp~~Q~~~le~G~l 218 (363)
+-.+++.++-.+..+.+...... .+.. .++ ++..|. .+++.||..++|+||..+. .+|+ .+ ..++
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~~~l~~--l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~----~l-~~vl 548 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEKRQIPR--LMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA----YI-PPAI 548 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC------CHHHH--HHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CH-HHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhhhHHHHH--HHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH----HH-HHHH
Confidence 44678888888888877654221 1111 123 333334 3489999999999998874 2331 11 1456
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 219 p~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
|.|+..++ +.++..|.+|+..+++.......-++ ..-++.|..++..+..+...+..+...+..++.
T Consensus 549 ~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 549 NLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 77777773 46799999999999987653322222 134566677777654456778888888888875
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=92.02 E-value=0.99 Score=48.74 Aligned_cols=176 Identities=9% Similarity=-0.008 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHcccCCC----chh------hHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHhccChHHHHHH
Q 017926 146 SLEDSQRALQELLILVEPID----NAN------DLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKASQNNPLVQKQV 212 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iD----nAn------~l~~lGgl~~Li~lL~s~---~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~ 212 (363)
+-..|..|+-.+..+.+... ... ++... ....++..|+++ ++-+|..|+|+||..+..-+ ...
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~-l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~ 493 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF-FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQ 493 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH-HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHH
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH-HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHH
Confidence 44677788887777755321 111 12110 011234555666 89999999999999987421 222
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-------c-cHHHHHh--cCcHHHHHHhhcCCC-ccHH--HHHH
Q 017926 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-------A-GQEMFYV--EAGDLMLQDILGNSS-FEIR--LHRK 279 (363)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~-------~-a~~~f~~--~gG~~~L~~lL~s~~-~~~k--lr~k 279 (363)
-...++.+++.|.+++..|+..|.+||.+++.+.. . ....+.. ..-++.|..++.... .+.+ ....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 23468889998888788899999999999997521 1 1122221 133455666666531 0111 1234
Q ss_pred HHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc----C-CChhHHHHHHHHHH
Q 017926 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA----S-ADLDLQEKVFLEHV 332 (363)
Q Consensus 280 A~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~----~-~d~~lqE~al~aL~ 332 (363)
+..+|..++.. ..++..+.+. .+++.|...+. + ++..++..++.++.
T Consensus 573 l~~al~~vv~~----~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~ 624 (960)
T 1wa5_C 573 LMRSIFRVLQT----SEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIG 624 (960)
T ss_dssp HHHHHHHHHHH----HTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 55666666542 1233344322 24444444442 2 36667766777766
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=91.57 E-value=3.7 Score=44.24 Aligned_cols=188 Identities=10% Similarity=0.092 Sum_probs=109.2
Q ss_pred HHHHHhhcCC-CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-------h
Q 017926 135 IAIDDLNNST-LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN-------P 206 (363)
Q Consensus 135 ~al~~L~~~~-~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-------p 206 (363)
..+..+.++. ..+--|..|+..+..+.+.+. ...+. ..++.++..|.++++.||..||++|.+++.+. +
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~ 535 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAF 535 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccc
Confidence 3455565542 256778889999999988763 22222 34777888888889999999999999988741 1
Q ss_pred H-HHHHHHH--cCcHHHHHHhhcCCC---HH--HHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh----cCCCccH
Q 017926 207 L-VQKQVLE--LGALSKLMKMVKSSF---VE--EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL----GNSSFEI 274 (363)
Q Consensus 207 ~-~Q~~~le--~G~lp~Ll~LL~s~~---~~--v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL----~s~~~~~ 274 (363)
. .+..+.. ...++.|+.++.... .. ....++.||+.++.........+.. .-++.|...+ +++ .+.
T Consensus 536 ~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~-~~~ 613 (960)
T 1wa5_C 536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNP-SNP 613 (960)
T ss_dssp SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSC-CCH
T ss_pred cccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCC-CCc
Confidence 2 1222222 145677777877741 11 2345667777666543322222211 1223333333 333 355
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 275 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 275 klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.++....-+|+.++.. .+++....+ ...+++.+...|.....++.+.+...+.
T Consensus 614 ~~~~~~~e~l~~l~~~----~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~ 666 (960)
T 1wa5_C 614 RFTHYTFESIGAILNY----TQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIA 666 (960)
T ss_dssp HHHHHHHHHHHHHHHT----SCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 6666777778777752 233333333 3456677777777665566666655544
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.20 E-value=10 Score=35.81 Aligned_cols=208 Identities=11% Similarity=0.058 Sum_probs=117.7
Q ss_pred cCCCHHHHHHhHHHHHHHHHHcC-----CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHH
Q 017926 103 QRLSPSELKKRQMEIKELMEKLK-----TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS 177 (363)
Q Consensus 103 ~~~~~e~l~~r~~~Lkeal~~l~-----~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~ 177 (363)
-+++|+++. -|+++++.+. .+++ ..+.-..+++ ..+.+.+.-++|-+.-++-+.+.+.-|..-+.-.
T Consensus 75 ~~Ls~~el~----~L~~l~~~l~~~s~~~~~~-~~l~~l~kil---~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~ 146 (304)
T 3ebb_A 75 KKLTEDDLI----LLEKILSLICNSSSEKPTV-QQLQILWKAI---NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGA 146 (304)
T ss_dssp GCCCHHHHH----HHHHHHHHHHTTCSSCCCH-HHHHHHHHHH---TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHH
T ss_pred cCcCHHHHH----HHHHHHHHHhccCCCccch-HHHHHHHHHH---cCCHHhHHHHHHHHHHHHcCccHHHHhhccccch
Confidence 358998775 3444444332 2232 2333344444 4566788899999998877666555555443333
Q ss_pred HHH----HhcCC-CCHHHHHHHHHHHHHHhccChHHHHHHHHc--CcHHHHHHhhcCCCHHHHH---HHHHHHHHHhcCC
Q 017926 178 VLV----GQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAV---KALYTVSSLIRNN 247 (363)
Q Consensus 178 ~Li----~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G~lp~Ll~LL~s~~~~v~~---kAL~ALSsLiR~~ 247 (363)
.++ ..+++ ..+..+..++++++++..+ +..++.++.. ..++.+...+.+.+..++. ..++-+|....+.
T Consensus 147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~ 225 (304)
T 3ebb_A 147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD 225 (304)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc
Confidence 333 44432 4567799999999999975 5566666643 3445555555555666654 4556566554432
Q ss_pred cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHH
Q 017926 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEK 326 (363)
Q Consensus 248 ~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~ 326 (363)
.. .+.-. --+..+..++... .+....-+.+-++.+|+. .+++..+.....|+-..+-...... ...+.|.
T Consensus 226 ~~-~~~~~--~ll~~l~~il~~~-~d~EalyR~LvALGtL~~-----~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 226 HN-IEGKA--QCLSLISTILEVV-QDLEATFRLLVALGTLIS-----DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp CC-HHHHH--HHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred CC-chHHH--HHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHh-----CChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 22 11111 1344555556543 355577788999999985 3444444445556655444444442 4455554
Q ss_pred HH
Q 017926 327 VF 328 (363)
Q Consensus 327 al 328 (363)
+-
T Consensus 297 ~~ 298 (304)
T 3ebb_A 297 CR 298 (304)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.11 E-value=2.4 Score=38.63 Aligned_cols=138 Identities=10% Similarity=0.092 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHHcccCCCchh---hH-Hh--cCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcC
Q 017926 144 TLSLEDSQRALQELLILVEPIDNAN---DL-SK--LGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG 216 (363)
Q Consensus 144 ~~s~e~k~~AL~~L~~Lve~iDnAn---~l-~~--lGgl~~Li~-lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G 216 (363)
+...-....+++.+..+++....+. .+ .. -..++.|+. +|.++.+.+|..|..++-.++....... -
T Consensus 66 DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~ 139 (278)
T 4ffb_C 66 DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------Q 139 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------H
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------H
Confidence 4456677788888888887654321 11 11 234566664 6888999999999998887764321111 1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc---HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a---~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.++.++..+++.++.++..++..|+.+++.+... ...++. ..++.+..++.+. +..||..|..++..+...
T Consensus 140 ~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~--~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 140 SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG--DRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS--SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHH
Confidence 2456667788888999999999999998864321 111111 2234566677776 677999999999988764
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=90.98 E-value=1.5 Score=46.96 Aligned_cols=135 Identities=15% Similarity=0.147 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHcccCCCc-hhhHHhcCCHHHHHHh---cCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHH
Q 017926 145 LSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQ---LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSK 220 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDn-An~l~~lGgl~~Li~l---L~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~ 220 (363)
.+-..++.++-.+..+.+..+. ...+ ++.++.. +.++++.||..++|+||..+.--.... .++ ...++.
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~~~~-----l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~ 533 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNYSDV-----VPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPL 533 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSCCSH-----HHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchhhHH-----HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHH
Confidence 4567777788777777776532 1111 2333333 244688999999999998875211111 222 378899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 221 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 221 Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
|+..+.+ +.++..|.+|+..+++..+....-+. ..-++.|..++.....+...+..+...+..++.
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 9988865 67899999999999986543221111 122344555565432345567777777777764
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=90.90 E-value=0.95 Score=39.09 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=53.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 017926 178 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSL 243 (363)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsL 243 (363)
.|..-|++.++.++.+|..+|-++++|. +..+..+.....+..|+++++. .++.|+.|++.-|-.-
T Consensus 56 al~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 56 AIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4556678889999999999999999994 7788788778889999999975 4567888887766543
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=90.61 E-value=2.2 Score=43.27 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHH
Q 017926 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 264 (363)
Q Consensus 185 s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~ 264 (363)
..++..+..||..|......-|..|+. +|..+++|..+++..+|+.|+..|..+|++ .... .-.++|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHH
Confidence 347999999999999999999999987 567899999999999999999999999997 3332 3456889
Q ss_pred HhhcCCC
Q 017926 265 DILGNSS 271 (363)
Q Consensus 265 ~lL~s~~ 271 (363)
++|+++.
T Consensus 107 QlLqtdd 113 (507)
T 3u0r_A 107 QLLQTDD 113 (507)
T ss_dssp HHTTCCC
T ss_pred HHHhccc
Confidence 9999863
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=90.48 E-value=1.2 Score=37.86 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcC
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN-Np~~Q~~~le~G~lp~Ll~LL~s------~~~~v~~kAL~ALSsLiR~ 246 (363)
+..|..-|++.++.++..|..+|-++++| .+..+..+.....+..|++++.. .+..|+.|++.-|-+-...
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455667899999999999999999999 46788888888999999999974 3568888887766654433
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=90.16 E-value=3.6 Score=45.35 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=92.5
Q ss_pred cccCCCHHHHH----------HhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhH
Q 017926 101 DVQRLSPSELK----------KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL 170 (363)
Q Consensus 101 ~~~~~~~e~l~----------~r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l 170 (363)
-.+.++.|+|+ +-|.|+.+++-..+.+.-...|++. +.+...+..+...++-.+..++.. +
T Consensus 319 ~lR~~~~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~---i~~~~l~~~ea~~~l~~~~~~~~P-t----- 389 (1056)
T 1lsh_A 319 FLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRT---LASEQLTSAEATQIVASTLSNQQA-T----- 389 (1056)
T ss_dssp HHTTSCHHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHTCCC-C-----
T ss_pred HHhcCCHHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHhhccCCC-C-----
Confidence 34567776653 1234666666655554344445544 455666766554454444443321 1
Q ss_pred HhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----cChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 017926 171 SKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (363)
Q Consensus 171 ~~lGgl~~Li~lL~s----~~~~Ir~~Aa~~Lgt~aq----NNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSs 242 (363)
...+..+..++++ .++.+|..|.-++|+++. +++.|...+++ -....|.+.+.+.+...+..+|.||+|
T Consensus 390 --~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 390 --RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp --HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 1123444556655 467888888888888774 33333221110 122233344455566678899999999
Q ss_pred HhcCCcccHHHHHhcCcHHHHHHhhcC-----CCccHHHHHHHHHHHHHHhh
Q 017926 243 LIRNNLAGQEMFYVEAGDLMLQDILGN-----SSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 243 LiR~~~~a~~~f~~~gG~~~L~~lL~s-----~~~~~klr~kA~~lL~~L~~ 289 (363)
+ ++|. .++.|..++.. .+...++|..|+++|..+..
T Consensus 467 ~--g~p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 467 A--GQPN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp H--TCGG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred c--CChh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 8 4553 45555555532 12346777778888777763
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=89.46 E-value=0.96 Score=37.98 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsL 243 (363)
+..|..-|++.++.++.+|..+|-++++|. +..+..+.....+..|+++++..++.|+.|.+..|-+-
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 344556678889999999999999999995 56777777777888888988777788888887766554
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=89.34 E-value=1.2 Score=49.17 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC---CH--HHHHHHHHHHHHHhcCCcccHHHHHhcCcH
Q 017926 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FV--EEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~---~~--~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~ 260 (363)
.+=..++.++|++|.++..-..-+..-.=..++|.|+.++... ++ -++..++|.||...+-... ...|. ..-+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-~~~~L-~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFL-RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-CHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc-cHHHH-HHHH
Confidence 5678999999999999975433323222235788888888631 12 2345677998875542111 11121 1234
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 261 ~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
..|...+..+ +.+++..|++++.+||.
T Consensus 543 ~~L~~~l~~~--~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHH
Confidence 4566666554 46799999999999996
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=88.43 E-value=1.1 Score=38.13 Aligned_cols=112 Identities=11% Similarity=0.032 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHh
Q 017926 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (363)
Q Consensus 236 AL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~l 315 (363)
.+-.|+-+|+..+.+. ...+..|..-|++. +..++..|+.++-.++. |.+..+...+.+..++..|+.+
T Consensus 21 ~~leicD~I~~~~~~~-----k~a~rai~krl~~~--n~~vql~AL~LLe~~vk----NCG~~fh~evas~~Fl~eL~kl 89 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGP-----THAPWLLAHKIQSP--QEKEALYALTVLEMCMN----HCGEKFHSEVAKFRFLNELIKV 89 (148)
T ss_dssp HHHHHHHHHHHSSHHH-----HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCHHHHHHHTSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCccH-----HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHhhHHHHHHHHHH
Confidence 3446777777654322 23456677777776 67789999999999987 4677777888888999999999
Q ss_pred ccC------CChhHHHHHHHHHHhhcccccCchhhhhHHHHHHhhhhccc
Q 017926 316 TAS------ADLDLQEKVFLEHVFCGLVFCTCPCIVRGAVIVAEYIYINF 359 (363)
Q Consensus 316 L~~------~d~~lqE~al~aL~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 359 (363)
+.. .+..++++++..+..++...+..+. ++..--.....|+.|
T Consensus 90 ~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~-i~~~y~~Lk~~G~~F 138 (148)
T 1mhq_A 90 LSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIK-IRDAYQMLKKQGIIK 138 (148)
T ss_dssp TCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTSSC
T ss_pred HccccCCCCCCHHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHHHcCCCC
Confidence 874 4889999999999877765554453 443333344444444
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=88.39 E-value=1.5 Score=38.21 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=57.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s------~~~~v~~kAL~ALSsLiR~~ 247 (363)
+..|..-|++.++.++.+|..+|-++++|. +..+..+.+...+..|++++.. .+..|+.|++..|-.-...+
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 345667778999999999999999999995 6788888888999999999973 24678888887777654433
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=88.16 E-value=1.8 Score=36.31 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHH
Q 017926 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (363)
Q Consensus 235 kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~ 314 (363)
..+-.|+-+|+..+.+.. ..+..|..-|.+. +..++..|+.++-.++. |.++.+...+.+..++..++.
T Consensus 24 ~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~--n~~~ql~AL~LLe~~vk----NcG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPK-----DCLRSIMRRVNHK--DPHVAMQALTLLGACVS----NCGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp HHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----hcCHHHHHHHhhHHHHHHHHH
Confidence 356668888887654322 3456677777776 56788999999988886 356666666767788888888
Q ss_pred hccCCChhHHHHHHHHHHhhcccccCch
Q 017926 315 LTASADLDLQEKVFLEHVFCGLVFCTCP 342 (363)
Q Consensus 315 lL~~~d~~lqE~al~aL~~~~~~~~~~~ 342 (363)
+++..++.++++++..+..++......+
T Consensus 93 l~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 93 VLNKGHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 8877899999999999986665444444
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=88.07 E-value=1.8 Score=37.31 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHh
Q 017926 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (363)
Q Consensus 236 AL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~l 315 (363)
.+-.|+-+|+..+.+.. ..+..|..-|++. +..++..|+.+|-.++. +....+...+.+..++..|+.+
T Consensus 35 ~~leicD~I~~~~~~~k-----eA~ral~krl~~~--n~~vql~AL~LLd~~vk----NcG~~Fh~evas~~Fl~el~~l 103 (163)
T 1x5b_A 35 LIMDICDKVGSTPNGAK-----DCLKAIMKRVNHK--VPHVALQALTLLGACVA----NCGKIFHLEVCSRDFATEVRAV 103 (163)
T ss_dssp HHHHHHHHHHHSSSHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HTCHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HhhHHHHHHHhhHHHHHHHHHH
Confidence 44567778876554322 2345677777776 56788999999998887 3566777777778888889888
Q ss_pred ccC-CChhHHHHHHHHHHhhcccccCc
Q 017926 316 TAS-ADLDLQEKVFLEHVFCGLVFCTC 341 (363)
Q Consensus 316 L~~-~d~~lqE~al~aL~~~~~~~~~~ 341 (363)
+.. .++.++++++..+..++......
T Consensus 104 ~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 104 IKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 876 58999999999988766544433
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=1.5 Score=38.04 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=85.7
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCC
Q 017926 218 LSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (363)
Q Consensus 218 lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~ 296 (363)
+..+|.-..++. .+.--..+-.|+-+|+..+.+.. ..+..|..-|++. +..++..|+.++-.++. |..
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k-----~A~ral~krl~~~--n~~vql~AL~LLd~~vk----NCG 82 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQ-----IAVRLLAHKIQSP--QEWEALQALTVLEACMK----NCG 82 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH----HcC
Confidence 445555444432 11122345578888887654322 2355677778876 56789999999999987 355
Q ss_pred CCcchhHHhCCcHHHHHHhccC------CChhHHHHHHHHHHhhcccccCchhhhhHHHHHHhhhhccc
Q 017926 297 KVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKVFLEHVFCGLVFCTCPCIVRGAVIVAEYIYINF 359 (363)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~------~d~~lqE~al~aL~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 359 (363)
..+...+.+..++..|+.++.. .+..++++++..+..++...+..+ .++..--.....|+.|
T Consensus 83 ~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~-~i~~~y~~Lk~~G~~f 150 (171)
T 1juq_A 83 RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEA-KIKDAYHMLKRQGIVQ 150 (171)
T ss_dssp HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTSCS
T ss_pred HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHCCCCC
Confidence 6677777788899999999863 378999999999997776555444 3444433444445444
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=4.2 Score=34.47 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=56.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s------~~~~v~~kAL~ALSsLiR~~ 247 (363)
+..|..-|++.++.++..|..+|-++++|. +..+..|.....+..|++++.. .+..|+.|.+..|-+-...+
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 334556678899999999999999999996 4567778788899999999974 45678888887777655443
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.35 E-value=5.3 Score=38.08 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=66.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcC-c-H----HHHHHhhcCCC-ccHHHHHHHHHHHHHHhh
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA-G-D----LMLQDILGNSS-FEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~g-G-~----~~L~~lL~s~~-~~~klr~kA~~lL~~L~~ 289 (363)
.+..|+ +....+..++.+|...|++.+||||++.+.+.+.- . + +-|..++...+ ....++.+-+..|.-|+.
T Consensus 72 lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~ 150 (315)
T 3qml_C 72 LLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPV 150 (315)
T ss_dssp HHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhc
Confidence 333444 33344567899999999999999999998777632 1 2 22333333221 133577778888888874
Q ss_pred hhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHH
Q 017926 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHV 332 (363)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~ 332 (363)
++ ..|. ...+..|.+++... +.+.|.+++.-+.
T Consensus 151 ------~~---~~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~ 185 (315)
T 3qml_C 151 ------TS---EDLP-IYSTVVLQNVYERNNKDKQLQIKVLELIS 185 (315)
T ss_dssp ------CS---TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ------Ch---Hhhh-hccHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 22 2222 33447777777666 8999999887765
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=84.90 E-value=24 Score=39.10 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccC--
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNN-- 205 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNN-- 205 (363)
|.+.+.+++..+-++ +.+.|..|-+.|..+-++. ++|..+..+|. +.++.+|..|+.+|-+..+.+
T Consensus 26 Dv~~Le~lv~~ly~p--~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~ 94 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWK 94 (1073)
T ss_dssp SHHHHHHHHHTTTCS--SHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGG
T ss_pred CHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 566677777776655 3567888888777765544 36777777775 458899999999999988742
Q ss_pred --hHHHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 017926 206 --PLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 206 --p~~Q~~~le~G~lp~Ll~LL~s~-----~~~v~~kAL~ALSsLiR~ 246 (363)
|.-+...++...+..+.+.-.++ ++.++.|...+++.+++.
T Consensus 95 ~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~ 142 (1073)
T 3gjx_A 95 ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 142 (1073)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence 44555566666666666654432 355667777788877765
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=84.80 E-value=4.6 Score=37.58 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHcccCC---Cc-hhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHH
Q 017926 146 SLEDSQRALQELLILVEPI---DN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~i---Dn-An~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~L 221 (363)
+...-..+|+.|..+++-. +. -.+-...--+|.|+.-|.++...+|..+-.++..+.+--|. ...++.+
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l 172 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPML 172 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHH
Confidence 4444455566555554321 10 11111122468888888888899999999998877653221 2356778
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcH---HHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 222 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD---LMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 222 l~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~---~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
+.-+++.+..+|..++..|++++..+... ...++ +.+..++.++ |..+|.-|..++..+...
T Consensus 173 ~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 173 LDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCC--CHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999865443 23578 8999999987 677999999998887754
|
| >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=84.63 E-value=3.5 Score=35.19 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=52.9
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHH-HHHhhcC---CCHHHHHHHHHHHHHH
Q 017926 177 SVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKS---SFVEEAVKALYTVSSL 243 (363)
Q Consensus 177 ~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~-Ll~LL~s---~~~~v~~kAL~ALSsL 243 (363)
..|..-|+ +.++.++..|..+|-++++|. +..+..+.+...+.. |++++.. .+..|+.|++..|-.-
T Consensus 56 ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 56 RAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 44556676 578999999999999999996 888888888889998 8999853 2357888877666553
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=84.58 E-value=11 Score=40.02 Aligned_cols=143 Identities=12% Similarity=0.021 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccC----
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNN---- 205 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNN---- 205 (363)
..+.+++..+..+ .+.+.|..|-+.|..+-.+. ++|..+..+|. +.++.+|..|+.+|-+..+.+
T Consensus 24 ~~l~~~l~~l~~~-~~~~~r~~A~~~L~~~~~~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l 93 (963)
T 2x19_B 24 ENVEKALHQLYYD-PNIENKNLAQKWLMQAQVSP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDI 93 (963)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGS
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhC
Confidence 3344555553322 24566766766666543332 57888888885 568999999999999988643
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcccHHHHHhcCcHHHHHHhhcCC---CccHHHHHHHH
Q 017926 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNS---SFEIRLHRKAV 281 (363)
Q Consensus 206 p~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~-~~~a~~~f~~~gG~~~L~~lL~s~---~~~~klr~kA~ 281 (363)
|.-+...++...+..+.+. .+++..++.|...+|+.|++. +|.... +-++-|+.++++. ..+...+.-+.
T Consensus 94 ~~~~~~~ir~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~Wp-----~~l~~l~~~~~~~~~~~~~~~~~~~~l 167 (963)
T 2x19_B 94 PTDQYESLKAQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAWP-----CAVADMVRLFQAEDSPVDGQGRCLALL 167 (963)
T ss_dssp CGGGHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTST-----THHHHHHHHHCC------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccccc-----hHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 3334444555566666553 223577899999999999886 343322 3455666666651 01233455667
Q ss_pred HHHHHHhh
Q 017926 282 SLVGDLAK 289 (363)
Q Consensus 282 ~lL~~L~~ 289 (363)
.++..|+.
T Consensus 168 ~iL~~l~e 175 (963)
T 2x19_B 168 ELLTVLPE 175 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHhCHH
Confidence 77777764
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=84.42 E-value=6.9 Score=42.62 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC----CH-HHHHHHHHHHHHHhcCCcccHHHHHhcCcH
Q 017926 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~----~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~ 260 (363)
.+-..+..|++++|.++.......+.-+-...++.|+.+.... +. -++..++|.++...+-.... ..+.. .-+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~-~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLR-TVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHH-HHH
Confidence 4667899999999999865433322111112444444443321 12 23446888888654422111 12221 345
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 261 ~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
+.|...|.++ +.+++..|++++..|+..
T Consensus 543 ~~ll~~l~~~--~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHH
Confidence 6677777765 578999999999999963
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=84.34 E-value=0.36 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=16.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHH
Q 017926 177 SVLVGQLNHPDTDIRKISAWIL 198 (363)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~~L 198 (363)
..+..+++++++.||..|+..+
T Consensus 77 ~~l~~L~~D~~~~VR~~aA~~L 98 (244)
T 1lrv_A 77 EALTPLIRDSDEVVRRAVAYRL 98 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTS
T ss_pred HHHHHHccCcCHHHHHHHHHHC
Confidence 3455677888999999888643
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=84.04 E-value=0.38 Score=44.26 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=16.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q 017926 177 SVLVGQLNHPDTDIRKISAWI 197 (363)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~~ 197 (363)
+.|..++++++..||..++.-
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 456677888888888888774
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=82.39 E-value=3.8 Score=36.73 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=53.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHh
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLI 244 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~-~~~v~~kAL~ALSsLi 244 (363)
+..|..-|++.++.++.+|..+|-++++|. +..+..|.+...+..|++++.+. +..|+.|++.-+-.-.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 334556678899999999999999999996 56778887778899999988753 4678887776655443
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=81.87 E-value=3.4 Score=37.38 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-HHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIR 245 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp-~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR 245 (363)
+..|..-|++.++.++.+|..+|-++++|.. ..+..|.....+..|+++++. .+..|+.|++..|-.-..
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3445666789999999999999999999944 477777777888888888865 346788888877766543
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=81.69 E-value=8.1 Score=32.70 Aligned_cols=114 Identities=9% Similarity=0.059 Sum_probs=79.4
Q ss_pred HHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCC
Q 017926 218 LSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (363)
Q Consensus 218 lp~Ll~LL~s~~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~ 296 (363)
+..++.-..++.- +.--..+-.|+-+|+..+.+-. ..+..|..-+.+. ++.++..|+.++-.++. |..
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk-----~a~ral~krl~~~--n~~v~l~AL~LLe~cvk----NCG 80 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSP--QEWEAIQALTVLETCMK----SCG 80 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HCC
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hcC
Confidence 4445554444321 1123466778888887654322 2455777777776 67789999999999987 467
Q ss_pred CCcchhHHhCCcHHHHHHhccC------CChhHHHHHHHHHHhhcccccCch
Q 017926 297 KVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKVFLEHVFCGLVFCTCP 342 (363)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~------~d~~lqE~al~aL~~~~~~~~~~~ 342 (363)
..+...+.+..++..|+.++.. .+..++++++..+..++...+..+
T Consensus 81 ~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p 132 (149)
T 3g2s_A 81 KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEV 132 (149)
T ss_dssp HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 7777778888899999999963 588999999999987776444444
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=81.68 E-value=15 Score=40.03 Aligned_cols=146 Identities=10% Similarity=0.036 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcc
Q 017926 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQN 204 (363)
Q Consensus 126 ~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqN 204 (363)
.|.+.+.+.+++..+-+++ .+.|..|-+.|..+-.+. ++|..+..+|. +.++.+|..|+.+|-+....
T Consensus 11 ~~~~~~~l~~~l~~~~~p~--~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~ 79 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITR 79 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh
Confidence 4445666667777666654 346777777776654433 46777777773 57899999999999998864
Q ss_pred C----hHHHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC-CcccHHHHHhcCcHHHHHHhhcCCCccH
Q 017926 205 N----PLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEI 274 (363)
Q Consensus 205 N----p~~Q~~~le~G~lp~Ll~LL~s~-----~~~v~~kAL~ALSsLiR~-~~~a~~~f~~~gG~~~L~~lL~s~~~~~ 274 (363)
+ |.-+...++...+..+...-..+ +..++.|...+|+.|++. .|.... +-++-|+.+++. +.
T Consensus 80 ~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp-----~ll~~L~~~~~~---~~ 151 (1049)
T 3m1i_C 80 KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSSS---SV 151 (1049)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHTT---CH
T ss_pred hCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHHcc---Ch
Confidence 2 33344445555555555443222 256788999999999886 443222 345566666653 23
Q ss_pred HHHHHHHHHHHHHhhh
Q 017926 275 RLHRKAVSLVGDLAKC 290 (363)
Q Consensus 275 klr~kA~~lL~~L~~~ 290 (363)
..+..+..++..|+.+
T Consensus 152 ~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 152 NVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455667777777643
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=81.21 E-value=20 Score=39.37 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcc
Q 017926 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQN 204 (363)
Q Consensus 126 ~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqN 204 (363)
.|-|.+.+.+++..+-++. .+.|..|-+.|.++=.+. ++|..+..+|. +.++.+|..|+.+|-+..+.
T Consensus 11 ~~~dv~~Le~av~~ly~p~--~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~ 79 (1023)
T 4hat_C 11 NDLDIALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITR 79 (1023)
T ss_dssp SCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 3445666777777776654 246777777777654443 46777777774 56899999999999999874
Q ss_pred ----ChHHHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 017926 205 ----NPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 205 ----Np~~Q~~~le~G~lp~Ll~LL~s~-----~~~v~~kAL~ALSsLiR~ 246 (363)
-|.-+...++...+..+.+...++ ...++.|...+++.+++.
T Consensus 80 ~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~ 130 (1023)
T 4hat_C 80 KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 130 (1023)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence 355566667777777777765443 345678899999998876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 363 | ||||
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 3e-15 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 8e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-06 |
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.4 bits (176), Expect = 3e-15
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 12/214 (5%)
Query: 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG 175
E++++ L+ S + ++ + AL+ L L E +DNA D +L G
Sbjct: 3 EVEQMKSCLRVLSQPMPPTAGEAE---QAADQQEREGALELLADLCENMDNAADFCQLSG 59
Query: 176 LSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEA 233
+ +LVG+ L +R +A ++G SQN +Q+QVL LGAL KL++++ +
Sbjct: 60 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 119
Query: 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293
VKAL+ +S L+R AG F G +L + ++ K+ L+ +L E
Sbjct: 120 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL--KVKSAFLLQNLLVGHPE 177
Query: 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKV 327
+ ++ +V L + E V
Sbjct: 178 HKGT-----LCSMGMVQQLVALVRTEHSPFHEHV 206
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 8e-07
Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 3/140 (2%)
Query: 133 IQIAIDDLNNSTLSL-EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIR 191
I A+ L++ +Q E + +LGG+ LV L P+ +++
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE--SAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251
+ +A L + + + + + + +++ + E K L + + + +
Sbjct: 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121
Query: 252 EMFYVEAGDLMLQDILGNSS 271
E +A ++ ++ S
Sbjct: 122 EELIADALPVLADRVIIPFS 141
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 2e-06
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTL----SLEDSQRALQELLILVEPIDNANDLSK 172
I L++ L + ++ + E + L IL + N +
Sbjct: 399 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG 458
Query: 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---F 229
L + + V L P +I++++A +L + +Q + + + GA + L +++ S
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGV 517
Query: 230 VEEAVKALYTVS 241
A L+ +S
Sbjct: 518 ATYAAAVLFRMS 529
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 363 | |||
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.97 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.65 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.64 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.63 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.62 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.56 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.12 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.11 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.1 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.08 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.94 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.92 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.8 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.74 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.66 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.61 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.39 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.24 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.19 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.15 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.94 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.92 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 96.9 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.52 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.2 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 95.12 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 93.21 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 92.63 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 92.58 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 92.31 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 92.1 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 92.0 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 91.78 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 91.05 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 89.53 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 88.59 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 88.25 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 86.47 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 85.13 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 84.64 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 83.32 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 80.72 |
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.2e-30 Score=236.73 Aligned_cols=200 Identities=27% Similarity=0.344 Sum_probs=184.7
Q ss_pred CHHHHHHHHHHHhhcCC----------CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHH-hcCCCCHHHHHHHHH
Q 017926 128 SDAQLIQIAIDDLNNST----------LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAW 196 (363)
Q Consensus 128 ~d~~lmk~al~~L~~~~----------~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~ 196 (363)
.|.+.||+++.++.++. .+.+.+..|++.|.+|+++.|||+.|+++||+++++. +|+++++++|..|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~ 81 (264)
T d1xqra1 2 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ 81 (264)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHH
Confidence 36788999999998873 4568899999999999999999999999999999986 788999999999999
Q ss_pred HHHHHhccChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHH
Q 017926 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR 275 (363)
Q Consensus 197 ~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~k 275 (363)
+|+++++|||.+|..+++.|++|.|++++.+ .++.++.++++||+++++++++++..|...||++.|+.+++++ +.+
T Consensus 82 ~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~ 159 (264)
T d1xqra1 82 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQK 159 (264)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHH
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chH
Confidence 9999999999999999999999999999975 4578999999999999999999999999999999999999987 678
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhh
Q 017926 276 LHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFC 334 (363)
Q Consensus 276 lr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~ 334 (363)
++.+++++|.+|+. .+++....+.+.|+++.|+.+|+++|+++|++++.+|..+
T Consensus 160 ~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L 213 (264)
T d1xqra1 160 LKVKSAFLLQNLLV-----GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 213 (264)
T ss_dssp HHHHHHHHHHHHHH-----HCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----ccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999996 3678889999999999999999999999999999999843
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.3e-16 Score=157.95 Aligned_cols=194 Identities=14% Similarity=0.126 Sum_probs=171.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
+.+...+..|.+.+ +.+.+..|...|..+..+.++...+.+.||+++|+.+|++++++++..|+++|++++.+++..+.
T Consensus 59 ~~v~~l~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 137 (529)
T d1jdha_ 59 QMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred hHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhh
Confidence 45666666776543 56888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+.+.|++|+|+++|++++..++..++++|.+++.+++..+..+...||++.|+.++.+.. +..++..++.++.+++.
T Consensus 138 ~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~l~~ls~- 215 (529)
T d1jdha_ 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV- 215 (529)
T ss_dssp HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT-
T ss_pred HHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhh-hHHHHHHHHHHHhhhhc-
Confidence 9999999999999999999999999999999999988888889999999999999997653 46688999999999974
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+++....+.+.|.++.|+.++.+++.++++.++.++.
T Consensus 216 -----~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~ 252 (529)
T d1jdha_ 216 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252 (529)
T ss_dssp -----STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred -----cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHH
Confidence 5667777888888888888888888888888877776
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=4e-15 Score=141.84 Aligned_cols=182 Identities=12% Similarity=0.106 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHHcccCCCc-hhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHH
Q 017926 145 LSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 223 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDn-An~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~ 223 (363)
.+++.+..++..|..++...+. ...+...|+++.++.++++++++++..|+++|++++.+++.....+++.|+++.|+.
T Consensus 200 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 279 (434)
T d1q1sc_ 200 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 279 (434)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHH
T ss_pred cccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHH
Confidence 3567788899999998877543 445667899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhH
Q 017926 224 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (363)
Q Consensus 224 LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l 303 (363)
++++++++++..|+++|++++++++.....+.+.|+++.++.++.++ +.++|..+++++.+++.. .+++....+
T Consensus 280 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~--~~~v~~~a~~~l~nl~~~----~~~~~~~~l 353 (434)
T d1q1sc_ 280 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSG----GTVEQIVYL 353 (434)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHHHH
T ss_pred hhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc--ChHHHHHHHHHHHHHHhc----CCHHHHHHH
Confidence 99999999999999999999999888888999999999999999987 578999999999999863 355567778
Q ss_pred HhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 304 RDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+.|+++.|+++|..+|.+++..++.++.
T Consensus 354 ~~~~~i~~L~~ll~~~d~~~~~~~l~~l~ 382 (434)
T d1q1sc_ 354 VHCGIIEPLMNLLSAKDTKIIQVILDAIS 382 (434)
T ss_dssp HHTTCHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999986
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=8.7e-15 Score=139.46 Aligned_cols=194 Identities=16% Similarity=0.230 Sum_probs=162.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCc--hhhHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDn--An~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
+++.++.+..+ +++.+..|+..+..++....| ...+.+.|++|+|+++|++ +++++|..|+++|++++..++...
T Consensus 15 i~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~ 92 (434)
T d1q1sc_ 15 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 92 (434)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence 55556666544 678888899999887765555 4678999999999999965 568999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCc---cHHHHHHHHHHHHH
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF---EIRLHRKAVSLVGD 286 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~---~~klr~kA~~lL~~ 286 (363)
..+++.|++|.|+.+|.+++..++..|+++|++++.+++..+..+.+.||+..|+.++..... .....+.+++.+.+
T Consensus 93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 172 (434)
T d1q1sc_ 93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 172 (434)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888889999999999999976532 24556778889999
Q ss_pred HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
++. ............++++.++.++.++|+++++.++.++..
T Consensus 173 ~~~-----~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~ 214 (434)
T d1q1sc_ 173 LCR-----NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 214 (434)
T ss_dssp HTC-----CCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred Hhh-----cccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcc
Confidence 885 233444445567889999999999999999999999873
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=2e-14 Score=141.21 Aligned_cols=192 Identities=13% Similarity=0.160 Sum_probs=163.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC--CchhhHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnAn~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
+.+.+..+. +.+.+.+..++..+..++... ...+.+.+.|++|+|+.+|++ .++.++..|+|+|++++..++...
T Consensus 78 l~~~~~~~~--s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~ 155 (503)
T d1wa5b_ 78 LPQMTQQLN--SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155 (503)
T ss_dssp HHHHHHHHS--CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 334444443 336678888999998877544 346688999999999999975 578899999999999999999888
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
..+.+.|++|.|+.+|.+++.+++..|+++|++|+.+++..+..+.+.||++.|+.++.+. +..+++.++|++.+|+.
T Consensus 156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~nl~~ 233 (503)
T d1wa5b_ 156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR 233 (503)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC--CHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888899999999999999999986 56789999999999996
Q ss_pred hhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
. ...........++++.++.++.++|.+++..++.++..
T Consensus 234 ~-----~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~ 272 (503)
T d1wa5b_ 234 G-----KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 272 (503)
T ss_dssp C-----SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred C-----CccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2 33344455567899999999999999999999999873
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=8.2e-15 Score=144.07 Aligned_cols=191 Identities=13% Similarity=0.104 Sum_probs=165.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcccCC-CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHH
Q 017926 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (363)
Q Consensus 134 k~al~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~ 212 (363)
...+..+.. +.+.+-+..|+..|..++... +....+...|+++.++.+|++++.+++..|+|+|++++..++.+++.+
T Consensus 122 ~~Lv~~l~~-~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l 200 (503)
T d1wa5b_ 122 PRLVEFMRE-NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 200 (503)
T ss_dssp HHHHHTTST-TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344555543 335667788999999988654 456678889999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhh
Q 017926 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (363)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~ 292 (363)
++.|+++.|+.++.+....++..++++|++++++..+........++++.|..++.+. +..++..+++.+.+|+.
T Consensus 201 ~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~~~~~l~~l~~--- 275 (503)
T d1wa5b_ 201 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSD--- 275 (503)
T ss_dssp HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHS---
T ss_pred HhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHhhcc---
Confidence 9999999999999999989999999999999998766665566678999999999886 56789999999999985
Q ss_pred hcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 293 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+++....+.+.|+++.++.++.+++..++..++.++.
T Consensus 276 --~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~ 313 (503)
T d1wa5b_ 276 --GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 313 (503)
T ss_dssp --SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred --CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence 34556678889999999999999999999999999988
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.3e-15 Score=137.89 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=129.4
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
+.+|.|+++|+++++++|..|+++|++++.+|++.|+.+.+.|++|+|+++|+++++.++..|++||.+++.++++.+..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhc---------------cC
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT---------------AS 318 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL---------------~~ 318 (363)
+.+.||++.|+.++.+.. +..++..+++++.+|+. +......+...|+.+.+..++ ..
T Consensus 82 i~~~g~v~~li~~l~~~~-~~~~~~~a~~~l~~l~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 154 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSS------TDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp HHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHT------SSSTHHHHHHHHHHHHHHHTTHHHHTCC---------C
T ss_pred HHHCCChHHHHHHHhccC-cHHHHHHHHHHHHHHHh------hhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhccc
Confidence 999999999999998753 56799999999999985 334444455544433333322 34
Q ss_pred CChhHHHHHHHHHH
Q 017926 319 ADLDLQEKVFLEHV 332 (363)
Q Consensus 319 ~d~~lqE~al~aL~ 332 (363)
.+.++++.++.++.
T Consensus 155 ~~~~v~~~a~~~l~ 168 (457)
T d1xm9a1 155 VDPEVFFNATGCLR 168 (457)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 47899999999887
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.6e-14 Score=142.63 Aligned_cols=193 Identities=13% Similarity=0.068 Sum_probs=161.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhc-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~l-Ggl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
+...++.|++. +.+.+..|+..+..+.........+... |.++.|+.+|. +++++++..|+++|++++. ++..+.
T Consensus 19 ip~L~~lL~~~--~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~ 95 (529)
T d1jdha_ 19 IPELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLL 95 (529)
T ss_dssp HHHHHHHHTCS--CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHH
Confidence 44455556533 5677888888888887655455556554 56889999996 4678999999999999996 677888
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+++.|++|.|+++|+++++.++..|+++|++++.+++..+..|.+.||++.|+.+|+++ +..++..++.++.+|+.
T Consensus 96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~- 172 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAY- 172 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHT-
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc--ChHHHHHHHHHHHHHhh-
Confidence 999999999999999999999999999999999999999999999999999999999987 56799999999999985
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHHhhc
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHVFCG 335 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~~~~ 335 (363)
.++..+..+.+.|.++.++.++... +..+++.+..++..++
T Consensus 173 ----~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls 214 (529)
T d1jdha_ 173 ----GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp ----TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ----hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 3555677788999999999999765 6788999988888543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.2e-14 Score=131.13 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHHcccCC-CchhhHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 145 LSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
.+.+-|..|+..|..++.+. .+...+...||+++|+.+|+ .+++.+|..|+++|++++.+++..+..+.+.|+++.|+
T Consensus 71 ~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~ 150 (264)
T d1xqra1 71 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM 150 (264)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHH
Confidence 46788999999999999754 55667889999999999996 57899999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+++.+++..++.+++++|++++.+++.....+.+.|+++.|+.+|+++ +..+|..|+++|.+|+.
T Consensus 151 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~--~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 151 RAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHT
T ss_pred HHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCC--CHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999987 45689999999999985
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.4e-13 Score=124.02 Aligned_cols=177 Identities=11% Similarity=0.098 Sum_probs=140.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccc-CCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
|..+++.|.++ +++.+..|...|..++. +.++.+.+...||+|+|+++|+++++++|..|+++|++++..|+..|..
T Consensus 4 ip~lv~~L~~~--~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66777888754 57899999999999875 5678999999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhc-------------CCCccHHHH
Q 017926 212 VLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-------------NSSFEIRLH 277 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~-------------s~~~~~klr 277 (363)
+.+.|+++.|++++.+ .+..++..|+.+|.++.++.. ....+...|+...+..++. ....+..++
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh-hHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence 9999999999999976 456789999999999998644 4555555444444444321 122356788
Q ss_pred HHHHHHHHHHhhhhhhcCCCCcch-hHHhCCcHHHHHHhccC
Q 017926 278 RKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTAS 318 (363)
Q Consensus 278 ~kA~~lL~~L~~~~~~~~~~~~~~-~l~~~g~v~~Lv~lL~~ 318 (363)
..++..+..++. +++... .+...|+++.++.++++
T Consensus 161 ~~a~~~l~~~~~------~~~~~~~~~~~~~~i~~l~~ll~~ 196 (457)
T d1xm9a1 161 FNATGCLRNLSS------ADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHHHHHHHTT------SHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc------CchHHHHHHHHhccHHHHHHHHhc
Confidence 999999999885 223333 33457889999998863
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.7e-05 Score=77.49 Aligned_cols=169 Identities=9% Similarity=-0.010 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
+...|..+++.+..++..... ++..-...+.+..+|.++...||..|+++++.+++..... ......+|.+..++
T Consensus 415 ~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~ 489 (588)
T d1b3ua_ 415 KWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMS 489 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCh--HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHh
Confidence 455666777777666543321 1111123556778889999999999999999998753221 12335789999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
.+++...|..++++++.+....+. .+....-++.|..+++++ ...+|..++.++..+... .+ .....
T Consensus 490 ~~~~~~~R~~~~~~l~~l~~~~~~---~~~~~~ilp~ll~~~~D~--v~nVR~~a~~~l~~i~~~----~~----~~~~~ 556 (588)
T d1b3ua_ 490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LD----NSTLQ 556 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SC----HHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCh---HHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH----cC----cHhHH
Confidence 998888899999999998765432 233445788999999886 467899999999999753 11 12233
Q ss_pred CCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 306 RFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+.+.+..++..+|.+++..|..|+.
T Consensus 557 ~~i~~~l~~L~~D~d~dVr~~A~~al~ 583 (588)
T d1b3ua_ 557 SEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345566666666679999999999987
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6.5e-05 Score=73.17 Aligned_cols=168 Identities=12% Similarity=0.027 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
+.+.+..+.+.|..+++.+...+... ..++++..++.++++.||..|+.+++.+++..+.. .++.-.+|.+..+.
T Consensus 61 ~~ev~~~~~~~l~~~~~~~~~~~~~~--~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~L~ 135 (588)
T d1b3ua_ 61 EDEVLLALAEQLGTFTTLVGGPEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLA 135 (588)
T ss_dssp CHHHHHHHHHHHTTCSGGGTSGGGGG--GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCChhHHH--HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHh
Confidence 34666667777777666543333222 23677778889999999999999999999864422 23445677777777
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
+++....|..|...++.+.....+... ..-.+.+..+++++ +..+|+.++..+..++... ......
T Consensus 136 ~~~~~~~r~~a~~ll~~~~~~~~~~~~----~~l~~~~~~l~~D~--~~~VR~~a~~~l~~~~~~~--------~~~~~~ 201 (588)
T d1b3ua_ 136 GGDWFTSRTSACGLFSVCYPRVSSAVK----AELRQYFRNLCSDD--TPMVRRAAASKLGEFAKVL--------ELDNVK 201 (588)
T ss_dssp TCSSHHHHHHHGGGHHHHTTTSCHHHH----HHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHTS--------CHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHh--------cHHHHH
Confidence 777677788888888887765433211 12356777777776 5778999999999988521 112233
Q ss_pred CCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 306 RFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+++.+..+++.++..+|..++.++.
T Consensus 202 ~~l~~~l~~l~~d~~~~vr~~a~~~l~ 228 (588)
T d1b3ua_ 202 SEIIPMFSNLASDEQDSVRLLAVEACV 228 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 466777777777778888888888776
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.08 E-value=2.2e-07 Score=72.96 Aligned_cols=109 Identities=8% Similarity=-0.004 Sum_probs=88.1
Q ss_pred cCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHH
Q 017926 183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (363)
Q Consensus 183 L~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~ 262 (363)
|.++++.||..|+++|+.+- ...++.|+++|++++..+|..|+++|+.+- .+ ..++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--~~---------~~~~~ 57 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE---------RAVEP 57 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SH---------HHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc--hh---------hhHHH
Confidence 56788899999999998642 136789999999999999999999998652 11 34678
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 263 L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
|..+|+++ +..+|..|+..|..+.. ...++.|..++..+++.++..|+.+|.
T Consensus 58 L~~~l~d~--~~~VR~~a~~aL~~i~~----------------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 58 LIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHhhhccc--hhHHHHHHHHHHHHhCc----------------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 89999876 56799999999987742 346788889999999999999999975
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.92 E-value=5.5e-06 Score=64.62 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=71.4
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
.++++|+.+|+++++.+|..|+++||.... .+.+|.|+.+|+++++.+|..|+.||+.+ +.
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i--~~------ 82 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI--GG------ 82 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH--CS------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHh--Cc------
Confidence 478999999999999999999999997642 24689999999999999999999999987 22
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~ 285 (363)
...++.|..+++++ +..+|..|+..|.
T Consensus 83 ---~~~~~~L~~ll~d~--~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 ---ERVRAAMEKLAETG--TGFARKVAVNYLE 109 (111)
T ss_dssp ---HHHHHHHHHHTTSC--CTHHHHHHHHHGG
T ss_pred ---cchHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence 23477888888876 5568888877653
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=0.00019 Score=62.29 Aligned_cols=130 Identities=8% Similarity=0.008 Sum_probs=78.7
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
.-.+.|+++|+++++.+|..|+.+|+.... + .++|.|++++++++..+|..|+.+|+.+-..... ...
T Consensus 19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~ 86 (276)
T d1oyza_ 19 LNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDN 86 (276)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccc
Confidence 345677888888888899888888887642 1 3578888888888888888888888877432211 111
Q ss_pred HHhcCcHHHHHH-hhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 254 FYVEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 254 f~~~gG~~~L~~-lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+..+.. +++++ +..+|..++..+..++.. .+. .....++.+...+...+..++..+..++.
T Consensus 87 -----~~~~l~~~~l~d~--~~~vr~~a~~aL~~~~~~-----~~~-----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~ 149 (276)
T d1oyza_ 87 -----VFNILNNMALNDK--SACVRATAIESTAQRCKK-----NPI-----YSPKIVEQSQITAFDKSTNVRRATAFAIS 149 (276)
T ss_dssp -----HHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHH-----CGG-----GHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHhcCC--ChhHHHHHHHHHHHHccc-----cch-----hhHHHHHHHHHHhcCcchHHHHHHHHHHh
Confidence 1223333 34444 566888888888777642 110 01123444444444445555555544444
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00013 Score=75.02 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=102.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc-HHHHHhc
Q 017926 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVE 257 (363)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a-~~~f~~~ 257 (363)
+...+++++..+|..|..++|.++.+.++.-...+. ..+|.|+..++++++.+|..++|+|+.++....+. .+.+ -.
T Consensus 400 l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~ 477 (888)
T d1qbkb_ 400 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LK 477 (888)
T ss_dssp HHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TT
T ss_pred HHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hh
Confidence 335667889999999999999998765432222221 46888999999989999999999999887643222 2222 23
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 258 gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..++.|...+.++ +.+++.+|++++..++.. ..+...+.+. .+++.++..+...+......+..|+.
T Consensus 478 ~~l~~ll~~l~d~--~~~V~~~a~~al~~l~~~----~~~~l~p~~~--~il~~l~~~l~~~~~~~~~~~~~al~ 544 (888)
T d1qbkb_ 478 PLMTELLKRILDS--NKRVQEAACSAFATLEEE----ACTELVPYLA--YILDTLVFAFSKYQHKNLLILYDAIG 544 (888)
T ss_dssp THHHHHHHHHSSS--CHHHHHHHHHHHHHHHHH----HTTSSGGGHH--HHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH----hhhhhhhHHH--HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4677777777775 578999999999999864 2444445442 46778888888777666666666655
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.66 E-value=0.0012 Score=65.27 Aligned_cols=197 Identities=10% Similarity=0.004 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhc-------------CCHHHHHHhcCCCCHHHHHHH
Q 017926 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-------------GGLSVLVGQLNHPDTDIRKIS 194 (363)
Q Consensus 128 ~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~l-------------Ggl~~Li~lL~s~~~~Ir~~A 194 (363)
+.++.+..++.++.+.+.+.+-|..|.-.|...+........-... .-...++..|.++++.||..+
T Consensus 36 ~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~ 115 (861)
T d2bpta1 36 NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAA 115 (861)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4567888899999888888888888888888877765432211110 112446677888999999999
Q ss_pred HHHHHHHhcc-ChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhc--CcHHHHHHhhcCC
Q 017926 195 AWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE--AGDLMLQDILGNS 270 (363)
Q Consensus 195 a~~Lgt~aqN-Np~~Q~~~le~G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~--gG~~~L~~lL~s~ 270 (363)
+.+++.++.. -|..+ + -..+|.|++.+.+++ ..++..|+.+++.++....+....+... .-+..+...+.+.
T Consensus 116 a~~i~~i~~~~~p~~~-w---peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~ 191 (861)
T d2bpta1 116 AQLIAAIADIELPHGA-W---PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQST 191 (861)
T ss_dssp HHHHHHHHHHHGGGTC-C---HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCcCc-h---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998752 11000 0 035788888887755 5677889999999987654433222211 1223334444444
Q ss_pred CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+..+|..+...+.++.... ............+++.+...++.++.+++..+..++.
T Consensus 192 ~~~~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 249 (861)
T d2bpta1 192 ETSKAVRLAALNALADSLIFI----KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLC 249 (861)
T ss_dssp CCCHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH----hHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHH
Confidence 446778999999998887531 1111111122346677888888899999999988876
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.0013 Score=56.67 Aligned_cols=126 Identities=10% Similarity=0.008 Sum_probs=78.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 136 al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
.++.|.+ .++..|..|...|..+-. -..++.|+.+|+++++.+|..|+++|+.+.+.... ...
T Consensus 24 L~~~L~d--~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~---- 86 (276)
T d1oyza_ 24 LFRLLDD--HNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDN---- 86 (276)
T ss_dssp HHHHTTC--SSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHH----
T ss_pred HHHHhcC--CCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccc----
Confidence 3445543 356778888777765421 13578888889999999999999999888654332 221
Q ss_pred CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 216 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 216 G~lp~Ll~-LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
.++.|+. ++++++..++..|+++|+.+..+.+.... ..++.+...+.++ +..++..++..+..
T Consensus 87 -~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~--~~~vr~~a~~~l~~ 150 (276)
T d1oyza_ 87 -VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDK--STNVRRATAFAISV 150 (276)
T ss_dssp -HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCS--CHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCc--chHHHHHHHHHHhh
Confidence 2334443 45566778888889998888765443222 2234555555554 44566666555443
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00065 Score=62.18 Aligned_cols=196 Identities=12% Similarity=0.078 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCch--hhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChH
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA--n~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~ 207 (363)
..++...+..+.+.+.+.+.+..++..+..+++....- ........++.+..+++++++++|..++.+++.+++..++
T Consensus 170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 249 (458)
T d1ibrb_ 170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249 (458)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 35667777788877778889999999999888765321 1222223456667788899999999999999999987664
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc--------------------------------------
Q 017926 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-------------------------------------- 249 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~-------------------------------------- 249 (363)
.-...+.....+.+....+++...++..|+..++.++.....
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 329 (458)
T d1ibrb_ 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 329 (458)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence 322112222233344444555555555555555444311000
Q ss_pred -----------------cH---HHHHhcC-------cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchh
Q 017926 250 -----------------GQ---EMFYVEA-------GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 302 (363)
Q Consensus 250 -----------------a~---~~f~~~g-------G~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~ 302 (363)
+. ..+.... -++.+...++++ +.++|.-|+.++..++.. ..+.....
T Consensus 330 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~----~~~~~~~~ 403 (458)
T d1ibrb_ 330 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEG----PEPSQLKP 403 (458)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSS----SCTTTTCT
T ss_pred hcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHh----cCHhHHHH
Confidence 00 0011111 123455556665 677888888899888742 11222111
Q ss_pred HHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 303 FRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 303 l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+ -..+++.++..++++++.+|..|+.||.
T Consensus 404 ~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~ 432 (458)
T d1ibrb_ 404 L-VIQAMPTLIELMKDPSVVVRDTAAWTVG 432 (458)
T ss_dssp T-TTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1 2468899999999999999999999988
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.0021 Score=67.18 Aligned_cols=186 Identities=9% Similarity=0.066 Sum_probs=120.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcccCCC--chhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 134 k~al~~L~~~~~s~e~k~~AL~~L~~Lve~iD--nAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
...++.++++ +++-|.-|+..|...+.+.. .-++.. ...++.|+.+|+.++++||..|+.|++.++...+..+.
T Consensus 6 ~~ll~k~~~~--D~d~R~ma~~dl~~~l~~~~~~~~~~~~-~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~- 81 (1207)
T d1u6gc_ 6 SNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV- 81 (1207)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred HHHHHhcCCC--CHhHHHHHHHHHHHHHhhcccccChHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH-
Confidence 3444444443 56777777777776554321 111111 12577899999999999999999999999976554322
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH-----HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-----EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~-----~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
...++.|+..+.+++..++..+..+|..++...+... ...+-...++.+...+... .+..++..++..+..
T Consensus 82 ---~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~v~~~al~~l~~ 157 (1207)
T d1u6gc_ 82 ---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMAD 157 (1207)
T ss_dssp ---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHH
Confidence 2457888888877776777777777777776543211 1112222344555555554 356788999999999
Q ss_pred HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
++.. ......+.. ..+++.++..|.+++..+|..|..||..
T Consensus 158 l~~~----~g~~l~~~~--~~il~~l~~~l~~~~~~vR~~A~~~l~~ 198 (1207)
T d1u6gc_ 158 MLSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGH 198 (1207)
T ss_dssp HHHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHH----hhHhhHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9864 222222222 2477888889999999999999999873
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00061 Score=71.47 Aligned_cols=139 Identities=16% Similarity=0.134 Sum_probs=101.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~ 255 (363)
|+.|+..+.+++..+|..++.|||.++.-+|. ..+|.|.+++.+++..+|..++.++..++.+.+.....++
T Consensus 930 ~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l 1001 (1207)
T d1u6gc_ 930 WALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL 1001 (1207)
T ss_dssp HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 55566667778899999999999999987774 4689999999999999999999999999988776655554
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCc-chhHHhCCcHHHHHHhccC----------------
Q 017926 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTAS---------------- 318 (363)
Q Consensus 256 ~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~-~~~l~~~g~v~~Lv~lL~~---------------- 318 (363)
.. -++.++..|+++ +..+|+.|+.++..++.+ .++. .+.+ ..++|.|.+....
T Consensus 1002 ~~-li~~ll~~l~d~--~~~vR~~al~~l~~~~~~-----~p~li~~~l--~~llp~l~~~t~~~~e~ir~v~~gp~kh~ 1071 (1207)
T d1u6gc_ 1002 KN-CIGDFLKTLEDP--DLNVRRVALVTFNSAAHN-----KPSLIRDLL--DTVLPHLYNETKVRKELIREVEMGPFKHT 1071 (1207)
T ss_dssp HH-HSTTTHHHHSSS--STHHHHHHHHHHHHHHHH-----CGGGTGGGH--HHHHHHHHHTTSCCGGGEEEEEETTEEEE
T ss_pred HH-HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHh-----ChHHHHHHH--HHHHHHHHHHhccchhheeeeecCCceee
Confidence 32 234455677776 567999999999999863 2332 3333 2356666554322
Q ss_pred --CChhHHHHHHHHHH
Q 017926 319 --ADLDLQEKVFLEHV 332 (363)
Q Consensus 319 --~d~~lqE~al~aL~ 332 (363)
+-.++|..|..++.
T Consensus 1072 ~d~gl~~rk~a~e~~~ 1087 (1207)
T d1u6gc_ 1072 VDDGLDIRKAAFECMY 1087 (1207)
T ss_dssp EETHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHH
Confidence 12568888888776
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.002 Score=58.74 Aligned_cols=197 Identities=9% Similarity=-0.057 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhH------------HhcCCHHHHHHhcCCCCHHHHHHHH
Q 017926 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL------------SKLGGLSVLVGQLNHPDTDIRKISA 195 (363)
Q Consensus 128 ~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l------------~~lGgl~~Li~lL~s~~~~Ir~~Aa 195 (363)
+.++.+-.++.++.+...+..-|..|.--|...+...+....- .+......++..+.++++.++ .++
T Consensus 31 ~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~ 109 (458)
T d1ibrb_ 31 NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPS-SAS 109 (458)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHH
T ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHH
Confidence 4567788888889887777788888877777766654321111 112233446677777665544 566
Q ss_pred HHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCcc
Q 017926 196 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 273 (363)
Q Consensus 196 ~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~--~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~ 273 (363)
.+++..+......+. -.+.++.|++.+.++. ...+..++++++.++....+....-.-..-++.+...+.++..+
T Consensus 110 ~~~~~i~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~ 186 (458)
T d1ibrb_ 110 QCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS 186 (458)
T ss_dssp HHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHhCCccc---CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccC
Confidence 777776642111000 1267899999887643 45677888888888765433221111123456777778766556
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 274 ~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+|..+...+..+.... ............+.+.+...+..++++++..++.++.
T Consensus 187 ~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 241 (458)
T d1ibrb_ 187 NNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 241 (458)
T ss_dssp HHHHHHHHHHHHHHTTTT----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHH
Confidence 778999999998887521 1111111222346677788888889999999888877
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0041 Score=61.62 Aligned_cols=194 Identities=9% Similarity=-0.021 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhH------------HhcCCHHHHHHhcCCCCHHHHHHHH
Q 017926 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL------------SKLGGLSVLVGQLNHPDTDIRKISA 195 (363)
Q Consensus 128 ~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l------------~~lGgl~~Li~lL~s~~~~Ir~~Aa 195 (363)
+..+.+..++.++.+.+.+.+-|..|.--|...+...+....- .+..--..++.+|.+++. ++..+|
T Consensus 32 ~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a 110 (876)
T d1qgra_ 32 NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSAS 110 (876)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHH
T ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHH
Confidence 3467788888999888888888988888887777543221100 011122456777877664 566789
Q ss_pred HHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCcccHHHHHhc--CcHHHHHHhhcCC
Q 017926 196 WILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVE--AGDLMLQDILGNS 270 (363)
Q Consensus 196 ~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~~--~~v~~kAL~ALSsLiR~~~~a~~~f~~~--gG~~~L~~lL~s~ 270 (363)
.+|+.++... |. .++ -+.+|.|++.+.+++ ..++..++.+|+.++....+ ..+... .-++.++..+.+.
T Consensus 111 ~~i~~i~~~~~p~-~~W---peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~ 184 (876)
T d1qgra_ 111 QCVAGIACAEIPV-NQW---PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKE 184 (876)
T ss_dssp HHHHHHHHHHGGG-TCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHCCc-ccc---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCc
Confidence 9999988531 10 000 167999999987654 56788899999999875432 222222 3467778888766
Q ss_pred CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+..++..+...+.++.... .+.........-+++.+...+..++.+++..+..++.
T Consensus 185 ~~~~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~ 242 (876)
T d1qgra_ 185 EPSNNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (876)
T ss_dssp CSCHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 556778888888887776421 1111111112235677778888889999999988876
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0037 Score=63.83 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHcccCCCc-hhhHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH-HHHHHHcCcHHHHHHh
Q 017926 148 EDSQRALQELLILVEPIDN-ANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKM 224 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDn-An~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~-Q~~~le~G~lp~Ll~L 224 (363)
+-...+++.+..+++.... -..+. ....++.++.++++.++++|..|..++|.++...+.. +.. ++ ..+|.|++-
T Consensus 637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~-l~-~~~~~l~~~ 714 (888)
T d1qbkb_ 637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IA-DFMPILGTN 714 (888)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHH-HH-HHHHHHHHH
Confidence 4445566666666654321 22332 2344666778899999999999999999988654322 111 11 367888888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
|+++..+++..|+|+++-|++.......-++ ..-++.|+.++++++.+..++..++.+|+.|+.. .++......
T Consensus 715 L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~-----~p~~~~~~l 788 (888)
T d1qbkb_ 715 LNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV-----CPQEVAPML 788 (888)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH-----CHHHHGGGG
T ss_pred hCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH-----CHHHHHhhH
Confidence 8888888999999999999987655433322 2467899999998766777999999999999853 222211111
Q ss_pred hCCcHHHHHHhccC-CChhHHHHHHHHH
Q 017926 305 DRFFLKSVVDLTAS-ADLDLQEKVFLEH 331 (363)
Q Consensus 305 ~~g~v~~Lv~lL~~-~d~~lqE~al~aL 331 (363)
..+++.++..|.. .|.+-++.+...+
T Consensus 789 -~~~~~~~~~~l~~~~d~~ek~~~~~g~ 815 (888)
T d1qbkb_ 789 -QQFIRPWCTSLRNIRDNEEKDSAFRGI 815 (888)
T ss_dssp -GGTHHHHHHHHTTSCCSHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 2356667777765 3666667777664
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.52 E-value=0.016 Score=56.71 Aligned_cols=157 Identities=10% Similarity=0.044 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcC---CHHHHHHhc--CCCCHHHHHHHHHHHHHHhcc
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLG---GLSVLVGQL--NHPDTDIRKISAWILGKASQN 204 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lG---gl~~Li~lL--~s~~~~Ir~~Aa~~Lgt~aqN 204 (363)
++++...+..+.+. .+...+..++..|..+++..+......--. -+..++..+ ...+..+|..|..+++.+...
T Consensus 133 peli~~L~~~~~s~-~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~ 211 (861)
T d2bpta1 133 PELMKIMVDNTGAE-QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHHHHHTSTT-SCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 35566666555443 356678889999999988776543221111 123333433 345789999999999999886
Q ss_pred ChHHHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 017926 205 NPLVQKQV-LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (363)
Q Consensus 205 Np~~Q~~~-le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~l 283 (363)
-+...... .....++.|...+.+++.+++..++.++..++..++.....+...-...++....++. +..++..+.-+
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~v~~~~~~~ 289 (861)
T d2bpta1 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEF 289 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHH
T ss_pred HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHH
Confidence 55433211 1223567788888988899999999999999987766544443332333444444554 56678777777
Q ss_pred HHHHhh
Q 017926 284 VGDLAK 289 (363)
Q Consensus 284 L~~L~~ 289 (363)
+..++.
T Consensus 290 l~~l~~ 295 (861)
T d2bpta1 290 WSTICE 295 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766653
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.059 Score=52.91 Aligned_cols=158 Identities=9% Similarity=0.072 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHh-cCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhccCh
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP 206 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~-lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aqNNp 206 (363)
++++...++.+.+++.+...+..++..|.++++..+...-... -..++.++..+.+ ++.++|..|..++.+..+..+
T Consensus 127 peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~ 206 (876)
T d1qgra_ 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence 3678888888888887888888899999999887664322222 2346777887754 457899999999998887544
Q ss_pred HHHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 017926 207 LVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (363)
Q Consensus 207 ~~Q~~~l-e~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~ 285 (363)
....... ..-.++.+...+.+++..++..++.++..++..++.....+........+...+.+. ...++..+...+.
T Consensus 207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 284 (876)
T d1qgra_ 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWS 284 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHH
Confidence 3322111 112456677778888888999999999999998877666666555666777777776 4557777877777
Q ss_pred HHhh
Q 017926 286 DLAK 289 (363)
Q Consensus 286 ~L~~ 289 (363)
.++.
T Consensus 285 ~i~~ 288 (876)
T d1qgra_ 285 NVCD 288 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=95.12 E-value=0.0023 Score=56.76 Aligned_cols=147 Identities=12% Similarity=0.059 Sum_probs=73.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHH-----HHhc-cChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH-----HHh
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILG-----KASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS-----SLI 244 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lg-----t~aq-NNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALS-----sLi 244 (363)
+..|+.+++.+++.||..|+..|+ .+.+ .++.++..+.+.=..+.|..++.+++..||..+..+++ -++
T Consensus 68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~ 147 (233)
T d1lrva_ 68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFM 147 (233)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHh
Confidence 445556666666677766665543 1111 24445544444433456667777766667666554422 222
Q ss_pred cCC-cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH-----HHhhhhhhcCCCCcchhHHhCCcHHHHHHhccC
Q 017926 245 RNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG-----DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (363)
Q Consensus 245 R~~-~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~-----~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~ 318 (363)
++. +.-...+...-|.+.|..+++++ +..+|..++..+. .|+. ..+...+..+.+. ..+.++..|..
T Consensus 148 ~D~d~~VR~~aA~~~~~~~L~~l~~D~--d~~VR~~aa~~L~~~~L~~l~~----D~d~~VR~aaae~-~~~~ll~~L~D 220 (233)
T d1lrva_ 148 RDEDRQVRKLVAKRLPEESLGLMTQDP--EPEVRRIVASRLRGDDLLELLH----DPDWTVRLAAVEH-ASLEALRELDE 220 (233)
T ss_dssp TCSCHHHHHHHHHHSCGGGGGGSTTCS--SHHHHHHHHHHCCGGGGGGGGG----CSSHHHHHHHHHH-SCHHHHHHCCC
T ss_pred cCCCHHHHHHHHHhcCHHHHHHHccCC--CHHHHHHHHHhcCcHHHHHHHh----CCCHHHHHHHHHh-ccHHHHHHhCC
Confidence 221 11122333334556666666665 5567776664321 1110 1122223333332 33455666666
Q ss_pred CChhHHHHHHH
Q 017926 319 ADLDLQEKVFL 329 (363)
Q Consensus 319 ~d~~lqE~al~ 329 (363)
+|+++++.++.
T Consensus 221 ~d~~VR~aA~~ 231 (233)
T d1lrva_ 221 PDPEVRLAIAG 231 (233)
T ss_dssp CCHHHHHHHHC
T ss_pred CCHHHHHHHHH
Confidence 67777776654
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=0.046 Score=52.91 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC-Cch----hhHHhcCCHHHHHHhcCC---CCHHHHHHHHHHHHHHh
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNA----NDLSKLGGLSVLVGQLNH---PDTDIRKISAWILGKAS 202 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA----n~l~~lGgl~~Li~lL~s---~~~~Ir~~Aa~~Lgt~a 202 (363)
+.+...+.++.... -+..--.++-.|..+++.. +.. ..+.-.+++.+++..|.. .|+++...--.+--.+-
T Consensus 268 ~~i~~l~~i~~~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~ 346 (477)
T d1ho8a_ 268 SDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILE 346 (477)
T ss_dssp HHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34555555555432 2333344666777777643 211 112223445566666643 67887654443333222
Q ss_pred cc---------------------ChHHH-HHHHH----------cCcHHHHHHhhcC----------CCHHHHHHHHHHH
Q 017926 203 QN---------------------NPLVQ-KQVLE----------LGALSKLMKMVKS----------SFVEEAVKALYTV 240 (363)
Q Consensus 203 qN---------------------Np~~Q-~~~le----------~G~lp~Ll~LL~s----------~~~~v~~kAL~AL 240 (363)
++ .|.-. +.|-. ...+..|+++|++ .++.+..-|++=|
T Consensus 347 ~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~Di 426 (477)
T d1ho8a_ 347 NEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDI 426 (477)
T ss_dssp HHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhH
Confidence 22 22221 22222 1368899999962 2334567789999
Q ss_pred HHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 241 SSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 241 SsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+..||++|.+...+.+.||=..++.+|.++ |+.||..|+.++.-|..
T Consensus 427 Gefvr~~P~gr~il~~lg~K~~vM~Lm~h~--d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 427 THVVELLPESIDVLDKTGGKADIMELLNHS--DSRVKYEALKATQAIIG 473 (477)
T ss_dssp HHHHHHCTTHHHHHHHHSHHHHHHHHTSCS--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcchhHHHHHcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 77899999999988775
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=1.4 Score=40.00 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc---HHHH
Q 017926 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG---DLML 263 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG---~~~L 263 (363)
++++-..+-.+|..|.. ++.....++....+..+.+.+..++-++...|...+-.++..|+.....|+..+= +...
T Consensus 127 ~~eiAl~~G~mLREcik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~ 205 (330)
T d1upka_ 127 SPEIALNCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY 205 (330)
T ss_dssp STTTHHHHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred CcchhhhhhHHHHHHHh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHH
Confidence 34444455555555554 4556667777777888888888888888889999999888888877778887652 4566
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcch-hHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 264 ~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~-~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
..+|.++ +--.|+.++-+|+.|.... .+..... .+-+..-++.++.+|++....+|-.|-+......+
T Consensus 206 ~~LL~s~--NYVtrRqSlKLLgelLldr---~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 206 EKLLHSE--NYVTKRQSLKLLGELLLDR---HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp HHHTTCS--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC--chHHHHHHHHHHHHHHhhh---hHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence 7788887 4458999999999998631 2222222 23345678899999999999999888777765444
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.58 E-value=0.91 Score=41.35 Aligned_cols=155 Identities=16% Similarity=0.102 Sum_probs=102.1
Q ss_pred CCCchhhHHhcCCHHHHHHhcC----C-------CCHHHHHHHHHHHHHHhccChHHHHHHHH-cCcHHHHHHhhcCCCH
Q 017926 163 PIDNANDLSKLGGLSVLVGQLN----H-------PDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKSSFV 230 (363)
Q Consensus 163 ~iDnAn~l~~lGgl~~Li~lL~----s-------~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le-~G~lp~Ll~LL~s~~~ 230 (363)
.++.-..| ..+|+..|+.+|. . .+..+...+..||..+..+ ....+.+++ .+++..|...|.++..
T Consensus 35 ~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~ 112 (343)
T d2bnxa1 35 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVP 112 (343)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred CchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCch
Confidence 45566677 4578888887763 1 1356788899999888854 445555554 4899999999999888
Q ss_pred HHHHHHHHHHHHHhc--CCcccHHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCC
Q 017926 231 EEAVKALYTVSSLIR--NNLAGQEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR--~~~~a~~~f~----------~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~ 298 (363)
.++.-|+--|+.+|- ..+.+...++ +.+=+..++..|++.. +..++..++.+|..|+.. .++
T Consensus 113 ~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~-~~ey~~a~m~lIN~li~~-----~~d 186 (343)
T d2bnxa1 113 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT-SIALKVGCLQLINALITP-----AEE 186 (343)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS-CHHHHHHHHHHHHHHHTT-----CSC
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccc-cHHHHHHHHHHHHHHHcC-----ccc
Confidence 888777777776662 1122222222 2234688888888763 466889999999999963 222
Q ss_pred ------cchhHHhCCcHHHHHHhccCCChhHHH
Q 017926 299 ------EPPLFRDRFFLKSVVDLTASADLDLQE 325 (363)
Q Consensus 299 ------~~~~l~~~g~v~~Lv~lL~~~d~~lqE 325 (363)
.+..|...|+.+.+-.+=..+++++.+
T Consensus 187 l~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~ 219 (343)
T d2bnxa1 187 LDFRVHIRSELMRLGLHQVLQELREIENEDMKV 219 (343)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence 345667788876655543334544443
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.43 Score=38.39 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=59.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s------~~~~v~~kAL~ALSsLiR~~~ 248 (363)
+..|..=|++.++.++..|..+|-+++.|. +..+..+...+.+..|+++++. .+..|+.|++.-|-.-..++|
T Consensus 47 ~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp 126 (145)
T d1ujka_ 47 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 126 (145)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 334555578899999999999999999995 9999999999999999999973 345788898888877665554
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=92.10 E-value=0.97 Score=41.02 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC----CCHH
Q 017926 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTD 189 (363)
Q Consensus 114 ~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s----~~~~ 189 (363)
|+|+-+++-..|.+.-...|+ +.+.+...+..+....+-.+....+. + . ..+..+..++++ .++.
T Consensus 74 r~~~lDal~~~GT~~a~~~i~---~~I~~~~ls~~ea~~~l~~l~~~~~P-t-~------~~l~~~~~l~~~~~~~~~~~ 142 (336)
T d1lsha1 74 RRWILDAVPAMATSEALLFLK---RTLASEQLTSAEATQIVASTLSNQQA-T-R------ESLSYARELLNTSFIRNRPI 142 (336)
T ss_dssp HHHHHHHHHHHCSHHHHHHHH---HHHHTTCSCHHHHHHHHHHHHHTCCC-C-H------HHHHHHHHHHTCHHHHTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH---HHHHcCCCCHHHHHHHHHHHhccCCC-C-H------HHHHHHHHHHcCcccccchh
Confidence 355556665555433334444 44556777777777777777655442 1 1 123445556654 5788
Q ss_pred HHHHHHHHHHHHhcc----ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHH
Q 017926 190 IRKISAWILGKASQN----NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aqN----Np~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~ 265 (363)
++..+.-.+|+++.+ ++.|.+.+++. ....+.+.....+.+.+..+|.||+|+ ++|.. ++.|..
T Consensus 143 l~~~a~La~gslv~~~c~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~p~~---------i~~l~~ 210 (336)
T d1lsha1 143 LRKTAVLGYGSLVFRYCANTVSCPDELLQP-LHDLLSQSSDRAKEEEIVLALKALGNA--GQPNS---------IKKIQR 210 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCGGGTHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH--TCGGG---------HHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHH-HHHHHHHhhcccchHHHHHHHHHHhcc--CCHhH---------HHHHHH
Confidence 999999999988753 33333322111 122233334455556677889999998 45543 455555
Q ss_pred hhcCC-----CccHHHHHHHHHHHHHHhh
Q 017926 266 ILGNS-----SFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 266 lL~s~-----~~~~klr~kA~~lL~~L~~ 289 (363)
++.+. ..+..+|..|++++..+..
T Consensus 211 ~l~~~~~~~~~~~~~vR~aAi~Alr~~~~ 239 (336)
T d1lsha1 211 FLPGQGKSLDEYSTRVQAEAIMALRNIAK 239 (336)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred HhcccccccccccHHHHHHHHHHHHHhhh
Confidence 55432 2356788888888877753
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.00 E-value=0.46 Score=38.12 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=56.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC
Q 017926 178 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~-~~~v~~kAL~ALSsLiR~~ 247 (363)
.|..-|++.++.++..|..+|-.+++|. +..+..+...+.+..|.+++++. +..|+.|++..|-.-...+
T Consensus 46 al~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (145)
T d1dvpa1 46 AIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (145)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3445678899999999999999999996 67788888889999999999765 4578888887776654433
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.083 Score=51.03 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=64.9
Q ss_pred CHHHHHHhcC----------CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 017926 175 GLSVLVGQLN----------HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (363)
Q Consensus 175 gl~~Li~lL~----------s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi 244 (363)
.+..|+.+|. +.++.+.+-||.=||..++..|..+..+-+.|+=..+++|+.+++++||..||.|+.-++
T Consensus 393 llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 393 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 472 (477)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4667788885 347889999999999999999999999989999999999999999999999999999988
Q ss_pred cCC
Q 017926 245 RNN 247 (363)
Q Consensus 245 R~~ 247 (363)
.++
T Consensus 473 ~~n 475 (477)
T d1ho8a_ 473 GYT 475 (477)
T ss_dssp HHS
T ss_pred Hhc
Confidence 764
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.36 Score=38.77 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=58.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCc
Q 017926 178 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s------~~~~v~~kAL~ALSsLiR~~~ 248 (363)
.|..=|++.++.++..|..+|-.+++|. +..+..+.....+..|++++.. .+..|+.|++..|-+....++
T Consensus 42 al~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~ 119 (143)
T d1mhqa_ 42 LLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (143)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3445568899999999999999999996 9999999988999999999973 346788888888777655553
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=89.53 E-value=0.058 Score=47.31 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=39.0
Q ss_pred HhcCCCCHHHHHHHHHH------HHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 017926 181 GQLNHPDTDIRKISAWI------LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTV 240 (363)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~~------Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~AL 240 (363)
.+|.+++.++|..|+.- +.-+.-.+|.++..+.+.=+.+.|..|+..++..|+..+..++
T Consensus 49 ~~l~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l 114 (233)
T d1lrva_ 49 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRL 114 (233)
T ss_dssp GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS
T ss_pred HHhcCCcHHHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhcc
Confidence 47889999999888862 2222234667777666543345566777777777776665554
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.59 E-value=0.37 Score=38.70 Aligned_cols=115 Identities=6% Similarity=0.009 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHH
Q 017926 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (363)
Q Consensus 234 ~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv 313 (363)
-.++-.|+-+|+..+.+.. ..+..|..-|+++ ++.++..|+.++-.+.. +.++.+...+.+.+++..|.
T Consensus 23 w~~il~icD~I~~~~~~~k-----~a~ral~krl~~~--n~~v~l~aL~LLd~~vk----NcG~~f~~~i~s~~fl~~l~ 91 (145)
T d1dvpa1 23 WPSILLICDEINQKDVTPK-----NAFAAIKKKMNSP--NPHSSCYSLLVLESIVK----NCGAPVHEEVFTKENCEMFS 91 (145)
T ss_dssp HHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----ccchHHHHHHhhHHHHHHHH
Confidence 4577788888887654332 3456677778876 56789999999999986 35566677777788889998
Q ss_pred HhccCC-ChhHHHHHHHHHHhhcccccCchh--hhhHHHHHHhhhhccc
Q 017926 314 DLTASA-DLDLQEKVFLEHVFCGLVFCTCPC--IVRGAVIVAEYIYINF 359 (363)
Q Consensus 314 ~lL~~~-d~~lqE~al~aL~~~~~~~~~~~~--~~r~~~l~~~~~~~~~ 359 (363)
.++.+. +..++++++..+..++.....+++ .++..---....|+.|
T Consensus 92 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~Lk~~G~~F 140 (145)
T d1dvpa1 92 SFLESTPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTF 140 (145)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHTTCCC
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHCCCCC
Confidence 888765 889999999999876664443332 2333222333446655
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.25 E-value=0.96 Score=36.46 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=59.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s------~~~~v~~kAL~ALSsLiR~~~ 248 (363)
+..|-.=|++.++.++.+|..+|-.+++|. +..+..+.....+..|++++.. .+..|+.|.+.-|-+-...++
T Consensus 41 ~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~ 120 (151)
T d1juqa_ 41 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 120 (151)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence 344555678899999999999999999995 8888888888999999999974 245788898888887766553
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.47 E-value=1 Score=35.96 Aligned_cols=113 Identities=9% Similarity=0.042 Sum_probs=78.4
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCC
Q 017926 219 SKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (363)
Q Consensus 219 p~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~ 297 (363)
..+|.-..++. .+.--.++..||-+|+..+.+. ...+..|..=|++. ++.++..|+.++-.+.. +.++
T Consensus 3 e~liekAT~~~~~~~dw~~il~icD~I~~~~~~~-----k~a~ral~krl~~~--n~~~~l~aL~LLe~~vk----NcG~ 71 (143)
T d1mhqa_ 3 ELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGP-----THAPWLLAHKIQSP--QEKEALYALTVLEMCMN----HCGE 71 (143)
T ss_dssp HHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHH-----HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCH
Confidence 34444444432 1223456777888887654322 13445566777776 56788999999999987 4677
Q ss_pred CcchhHHhCCcHHHHHHhccC------CChhHHHHHHHHHHhhcccccCch
Q 017926 298 VEPPLFRDRFFLKSVVDLTAS------ADLDLQEKVFLEHVFCGLVFCTCP 342 (363)
Q Consensus 298 ~~~~~l~~~g~v~~Lv~lL~~------~d~~lqE~al~aL~~~~~~~~~~~ 342 (363)
.+...+.+..++..|+.++.. .+..++++++..+..++...+.++
T Consensus 72 ~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~~~~ 122 (143)
T d1mhqa_ 72 KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDI 122 (143)
T ss_dssp HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888888888999999999863 478899999999976666555444
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.13 E-value=3 Score=41.00 Aligned_cols=132 Identities=11% Similarity=0.078 Sum_probs=91.2
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCC-----
Q 017926 176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNN----- 247 (363)
Q Consensus 176 l~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~--~~v~~kAL~ALSsLiR~~----- 247 (363)
++.+..+| ++.+++.|..|-.-|-.+- ++| |.+..|++++.+++ ..+|.-|+-.+-+.++.+
T Consensus 4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~-~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~ 73 (959)
T d1wa5c_ 4 LETVAKFLAESVIASTAKTSERNLRQLE-TQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN 73 (959)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHHHHHHH-TST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHH-cCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 45666776 4678888988888887764 455 77888999887654 467877888888877642
Q ss_pred -----cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChh
Q 017926 248 -----LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD 322 (363)
Q Consensus 248 -----~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~ 322 (363)
++..+..++. .|+.+|.++ +..+|...+.+++.++... .|+.. .++++.|.+.++++|..
T Consensus 74 ~~~~i~~e~k~~Ik~----~ll~~l~~~--~~~ir~~l~~~i~~I~~~d----~p~~W-----p~ll~~l~~~l~s~~~~ 138 (959)
T d1wa5c_ 74 GNHLLPANNVELIKK----EIVPLMISL--PNNLQVQIGEAISSIADSD----FPDRW-----PTLLSDLASRLSNDDMV 138 (959)
T ss_dssp SCBSSCHHHHHHHHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHH----STTTC-----TTHHHHHHTTCCSSCTT
T ss_pred ccCCCCHHHHHHHHH----HHHHHHhCC--cHHHHHHHHHHHHHHHHHh----Ccccc-----HHHHHHHHHHhCCCCHH
Confidence 1122333333 344444443 5678999999999998631 22322 36788899999999999
Q ss_pred HHHHHHHHHH
Q 017926 323 LQEKVFLEHV 332 (363)
Q Consensus 323 lqE~al~aL~ 332 (363)
.++.++.++.
T Consensus 139 ~~~~~L~~l~ 148 (959)
T d1wa5c_ 139 TNKGVLTVAH 148 (959)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988888876
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=84.64 E-value=3.2 Score=37.32 Aligned_cols=134 Identities=14% Similarity=0.139 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHccc----CCC-chhhHHhcCCHHHHHHh----cCCCCHHHHHHH
Q 017926 126 TPSDAQLIQIAIDDLNNST--LSLEDSQRALQELLILVE----PID-NANDLSKLGGLSVLVGQ----LNHPDTDIRKIS 194 (363)
Q Consensus 126 ~~~d~~lmk~al~~L~~~~--~s~e~k~~AL~~L~~Lve----~iD-nAn~l~~lGgl~~Li~l----L~s~~~~Ir~~A 194 (363)
-|+ .+.|+...+.+..+. ..+.-+..++-.+..+|. +.+ ..+.+ ++.+... ++..+.+-+..+
T Consensus 119 ~Pt-~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~ 192 (336)
T d1lsha1 119 QAT-RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDEL-----LQPLHDLLSQSSDRAKEEEIVLA 192 (336)
T ss_dssp CCC-HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGG-----THHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCC-HHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHH-----HHHHHHHHHHhhcccchHHHHHH
Confidence 444 677888888776532 234445555555555444 222 22222 3444443 445677777888
Q ss_pred HHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC-------CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh
Q 017926 195 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-------FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (363)
Q Consensus 195 a~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~-------~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL 267 (363)
..+||++- .| +.++.|..++... +..+|..|++|+..+..++|.. ..+.+..++
T Consensus 193 LkaLGN~g--~p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~l~~i~ 253 (336)
T d1lsha1 193 LKALGNAG--QP---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIF 253 (336)
T ss_dssp HHHHHHHT--CG---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHH
T ss_pred HHHHhccC--CH---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHHHHHHH
Confidence 99999886 34 3577777777542 3578999999999987766531 234556666
Q ss_pred cCCCccHHHHHHHHHHH
Q 017926 268 GNSSFEIRLHRKAVSLV 284 (363)
Q Consensus 268 ~s~~~~~klr~kA~~lL 284 (363)
.+...+..+|..|..++
T Consensus 254 ~n~~e~~EvRiaA~~~l 270 (336)
T d1lsha1 254 LNVAIKSELRIRSCIVF 270 (336)
T ss_dssp HCTTSCHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHH
Confidence 55555667777666655
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.32 E-value=2.1 Score=34.12 Aligned_cols=109 Identities=9% Similarity=0.081 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCC
Q 017926 218 LSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (363)
Q Consensus 218 lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~ 296 (363)
+..++.-..++. .+.--.++-.|+-+|+..+.+.. .++..|..=|++. +..++..|+.++-.+.. +.+
T Consensus 9 ~e~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k-----~a~r~l~krl~~~--~~~~~l~aL~LLe~~vk----NCG 77 (145)
T d1ujka_ 9 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSP--QEWEAIQALTVLETCMK----SCG 77 (145)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHT----SCC
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HHh
Confidence 444555444432 12234677888999987655332 2455677778776 56788899999988886 467
Q ss_pred CCcchhHHhCCcHHHHHHhccC------CChhHHHHHHHHHHhhccc
Q 017926 297 KVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKVFLEHVFCGLV 337 (363)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~------~d~~lqE~al~aL~~~~~~ 337 (363)
+.+...+.+.+++..|+.++.. .+..++++++..+..++..
T Consensus 78 ~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~ 124 (145)
T d1ujka_ 78 KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 124 (145)
T ss_dssp HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 7888888899999999999963 4779999999999755543
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.72 E-value=14 Score=32.83 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=80.9
Q ss_pred hccCh--HHHHHHHHcCcHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCCcccHHHHHh-cCcHHHHHHhh
Q 017926 202 SQNNP--LVQKQVLELGALSKLMKMVKS----S-------FVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDIL 267 (363)
Q Consensus 202 aqNNp--~~Q~~~le~G~lp~Ll~LL~s----~-------~~~v~~kAL~ALSsLiR~~~~a~~~f~~-~gG~~~L~~lL 267 (363)
-.++| .+|+ | ..+|+..|+.+|.. . +......++.+|-+++. +..+.+.++. .+++..|..+|
T Consensus 31 Lrt~~~sWv~~-F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L 107 (343)
T d2bnxa1 31 LNNNPVSWVQT-F-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAM 107 (343)
T ss_dssp HHHSCHHHHHH-H-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTC
T ss_pred HhcCCchHHHH-H-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHcc
Confidence 34555 4444 3 56788888887731 1 12345678888888875 4666666665 57899999999
Q ss_pred cCCCccHHHHHHHHHHHHHHhhhhh-hcCCCCc------chhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHH
Q 017926 268 GNSSFEIRLHRKAVSLVGDLAKCQL-ENMHKVE------PPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 268 ~s~~~~~klr~kA~~lL~~L~~~~~-~~~~~~~------~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
.++ ..++|.-|.-+|+.+|.... +.+.+.. .....+.+-...+++.|+.+ +.+++-..+.-+.
T Consensus 108 ~s~--~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN 178 (343)
T d2bnxa1 108 DPA--VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN 178 (343)
T ss_dssp CTT--SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred CCC--chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHH
Confidence 987 57789999999999985310 0001111 12234456668888888876 6677766555444
|