Citrus Sinensis ID: 017944

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
ccEEEEEcccccEEEcccccccccccEEccccccccccccccccccccccccccccccccEEEccccHHHHHHHcccccccccccccccEEEcccccccHHHHHHHHHHHHccccccccHHccccHHHHcccccccEEEEEcccccEEEcccccccccccccHHEEccHHHHHHHHHHHHHcccccccccHHHHHHHHccccEEcccHHHHHHHcccccccEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHcccEEcccccccccHHHHHHHHHHccccccccEEEccccccccccccEEEEEcHHHHcccccccccccccccccccccccEEcccc
ccEEEEEcccccEEccccccccccccEcccEcccccccccEEEcHHHHHccccEEEccccEEccHHHHHHHHHHHHHHHcccccccHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEEccHHHHHHHccccHHHHccccccHHHHHHHHHccccHHHHHHHHccEEEEcHHHccccHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHcc
MEAAVVDAGSKllkagpaipdqapsmvipsqmkrvledgsssvdnstlvedvtvdpvvrgFIRDWDAMEDLLHHVLYaglgweegnegqilftdplcspkAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRisgctvdighgkidiaPVIEGAVQHIASRRFEVGGMDLTKLLAQElgktnpsvnlslyDVEKLKEQFSCCAEDELAYEKTQKSCeieqhtlpdgqvirigkerytvgealfqpsilgleaHGIVEQLVHTISTVSSENHRQLLENTvlcggttsmtgfEDRFQKEAglcssairptlvkppeympenltLYSAWIGGAILAKvvfpqnqhitkadydesgpsvvhrkcf
MEAAVVDAGskllkagpaipdqapsmVIPSQMKRVLEDgsssvdnstlvedvtvdpVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQelgktnpsvnlsLYDVEKLKEQFSCCAEDELAYEKTqksceieqhtlpdgqvirIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHItkadydesgpsvvhrkcf
MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
************************************************VEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT*****************
MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAED*****************LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
********GSKLLKAGPAIPDQAPSMVIPSQMKRV*********NSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADY*************
MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q8L4Y5363 Actin-related protein 7 O yes no 0.997 0.997 0.846 0.0
A3ANB5360 Actin-related protein 7 O yes no 0.991 1.0 0.727 1e-155
A2XMK6360 Actin-related protein 7 O N/A no 0.991 1.0 0.727 1e-155
P84336375 Actin, cytoplasmic 1 OS=C N/A no 0.969 0.938 0.402 2e-60
Q2U7A3375 Actin OS=Aspergillus oryz no no 0.972 0.941 0.397 2e-60
Q25010376 Actin, cytoplasmic A3a OS N/A no 0.969 0.936 0.402 5e-60
P04829376 Actin, cytoplasmic A3 OS= N/A no 0.969 0.936 0.402 1e-59
Q26065376 Actin, adductor muscle OS N/A no 0.969 0.936 0.396 2e-59
P29751375 Actin, cytoplasmic 1 OS=O yes no 0.969 0.938 0.399 2e-59
P60707375 Actin, cytoplasmic 1 OS=T N/A no 0.969 0.938 0.399 2e-59
>sp|Q8L4Y5|ARP7_ARATH Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1 Back     alignment and function desciption
 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/364 (84%), Positives = 341/364 (93%), Gaps = 2/364 (0%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDN-STLVEDVTVDPVVR 59
           MEA VVDAGSK LKAG AIPDQ+P+M+IPSQMKR+++DGSSS DN +T+ EDVT+DP+ R
Sbjct: 1   MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIER 60

Query: 60  GFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGF 119
           G IRDWDAMEDLL +V+Y GLGWEEGNEG ILFTDPLC+PKA+REQLVQLMFETFN+SGF
Sbjct: 61  GLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGF 120

Query: 120 YSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQE 179
           Y+SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV+EGAVQHIAS+RFE+GG +LTKL AQE
Sbjct: 121 YASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGGTELTKLFAQE 180

Query: 180 LGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYT 239
           LGKTNPS+NLS+ DVEKLKEQ++ CAEDE+AY+KTQ +CEIEQHTLPDGQVI IG+ERY+
Sbjct: 181 LGKTNPSMNLSMSDVEKLKEQYANCAEDEIAYKKTQ-NCEIEQHTLPDGQVISIGRERYS 239

Query: 240 VGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE 299
           VGEALFQPSILGLE HGIVEQLV  ISTVSSENHRQLLENTVLCGGTTSMTGFE RFQKE
Sbjct: 240 VGEALFQPSILGLEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSMTGFESRFQKE 299

Query: 300 AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH 359
           A LCSSAIRPTLVKPPEYMPENL +YSAW+GGAILAKVVFPQNQH+TKADYDE+GPSVVH
Sbjct: 300 ANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVH 359

Query: 360 RKCF 363
           RKCF
Sbjct: 360 RKCF 363
Essential protein required during embryogenesis and all plant development stages, probably through a chromatin-mediated regulation of gene expression.
Arabidopsis thaliana (taxid: 3702)
>sp|A3ANB5|ARP7_ORYSJ Actin-related protein 7 OS=Oryza sativa subsp. japonica GN=ARP7 PE=2 SV=2 Back     alignment and function description
>sp|A2XMK6|ARP7_ORYSI Actin-related protein 7 OS=Oryza sativa subsp. indica GN=ARP7 PE=2 SV=2 Back     alignment and function description
>sp|P84336|ACTB_CAMDR Actin, cytoplasmic 1 OS=Camelus dromedarius GN=ACTB PE=1 SV=1 Back     alignment and function description
>sp|Q2U7A3|ACT_ASPOR Actin OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=act1 PE=3 SV=1 Back     alignment and function description
>sp|Q25010|ACT3A_HELAM Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1 Back     alignment and function description
>sp|P04829|ACT3_BOMMO Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3 Back     alignment and function description
>sp|Q26065|ACT_PLAMG Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1 Back     alignment and function description
>sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 OS=Oryctolagus cuniculus GN=ACTB PE=2 SV=1 Back     alignment and function description
>sp|P60707|ACTB_TRIVU Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=ACTB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
225450096361 PREDICTED: actin-related protein 7 [Viti 0.994 1.0 0.867 0.0
18411737363 actin-related protein 7 [Arabidopsis tha 0.997 0.997 0.846 0.0
297817402363 hypothetical protein ARALYDRAFT_486557 [ 0.997 0.997 0.846 0.0
255553556360 Actin, putative [Ricinus communis] gi|22 0.991 1.0 0.840 0.0
224106087363 actin related protein [Populus trichocar 1.0 1.0 0.820 0.0
224055172363 actin related protein [Populus trichocar 1.0 1.0 0.823 0.0
449436311361 PREDICTED: actin-related protein 7-like 0.994 1.0 0.831 0.0
357457909363 Actin related protein [Medicago truncatu 1.0 1.0 0.807 1e-180
359807411361 uncharacterized protein LOC100813266 [Gl 0.994 1.0 0.820 1e-180
356534592361 PREDICTED: actin-related protein 7-like 0.994 1.0 0.820 1e-179
>gi|225450096|ref|XP_002278255.1| PREDICTED: actin-related protein 7 [Vitis vinifera] gi|297736268|emb|CBI24906.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/363 (86%), Positives = 342/363 (94%), Gaps = 2/363 (0%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRG 60
           MEA VVDAGSKLLKAG A+PDQAPSM+IP+QMKR LEDG   + +S+L ED+TVDPVVRG
Sbjct: 1   MEAVVVDAGSKLLKAGFAVPDQAPSMIIPTQMKRTLEDGP--LTDSSLFEDITVDPVVRG 58

Query: 61  FIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFY 120
           FIRDWDAMEDLL+HVLY GLGWE GNEGQILFTDPL +PKA REQLVQLMFETFNISGFY
Sbjct: 59  FIRDWDAMEDLLNHVLYTGLGWEMGNEGQILFTDPLSTPKAFREQLVQLMFETFNISGFY 118

Query: 121 SSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 180
           +SEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFE+GG+DLTKLLAQEL
Sbjct: 119 ASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEIGGVDLTKLLAQEL 178

Query: 181 GKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 240
           GK+NP+VNL++ DVE+LKEQ+SCCAEDELAYEK Q+SC+ EQHTLPDGQVI IG+ERYTV
Sbjct: 179 GKSNPTVNLNITDVERLKEQYSCCAEDELAYEKIQRSCQREQHTLPDGQVINIGRERYTV 238

Query: 241 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 300
           GEALFQPSILGLEAHGIVEQLV +ISTVSSENHRQLLENTVLCGGT SM GFEDRFQKEA
Sbjct: 239 GEALFQPSILGLEAHGIVEQLVRSISTVSSENHRQLLENTVLCGGTASMGGFEDRFQKEA 298

Query: 301 GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 360
            LCSSAIRP+LVKPPEYMPENLT+YSAW+GGAILAKVVFPQNQHITK DYDE+GPS+VHR
Sbjct: 299 SLCSSAIRPSLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKGDYDETGPSIVHR 358

Query: 361 KCF 363
           KCF
Sbjct: 359 KCF 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18411737|ref|NP_567105.1| actin-related protein 7 [Arabidopsis thaliana] gi|75300978|sp|Q8L4Y5.1|ARP7_ARATH RecName: Full=Actin-related protein 7 gi|21427469|gb|AAM53247.1|AF507915_1 actin-related protein 7 [Arabidopsis thaliana] gi|20466390|gb|AAM20512.1| actin -like protein [Arabidopsis thaliana] gi|21489920|tpg|DAA00028.1| TPA_exp: actin-related protein 7; AtARP7 [Arabidopsis thaliana] gi|21593327|gb|AAM65276.1| actin-like protein [Arabidopsis thaliana] gi|22136342|gb|AAM91249.1| actin -like protein [Arabidopsis thaliana] gi|332646594|gb|AEE80115.1| actin-related protein 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297817402|ref|XP_002876584.1| hypothetical protein ARALYDRAFT_486557 [Arabidopsis lyrata subsp. lyrata] gi|297322422|gb|EFH52843.1| hypothetical protein ARALYDRAFT_486557 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255553556|ref|XP_002517819.1| Actin, putative [Ricinus communis] gi|223543091|gb|EEF44626.1| Actin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224106087|ref|XP_002314038.1| actin related protein [Populus trichocarpa] gi|222850446|gb|EEE87993.1| actin related protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224055172|ref|XP_002298428.1| actin related protein [Populus trichocarpa] gi|222845686|gb|EEE83233.1| actin related protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449436311|ref|XP_004135936.1| PREDICTED: actin-related protein 7-like [Cucumis sativus] gi|449488840|ref|XP_004158188.1| PREDICTED: actin-related protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357457909|ref|XP_003599235.1| Actin related protein [Medicago truncatula] gi|355488283|gb|AES69486.1| Actin related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|359807411|ref|NP_001241387.1| uncharacterized protein LOC100813266 [Glycine max] gi|255640268|gb|ACU20424.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356534592|ref|XP_003535837.1| PREDICTED: actin-related protein 7-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2101866363 ARP7 "AT3G60830" [Arabidopsis 0.997 0.997 0.848 5.2e-168
UNIPROTKB|F1MRD0375 ACTB "Actin, cytoplasmic 1, N- 0.966 0.936 0.408 1.2e-56
FB|FBgn0000042376 Act5C "Actin 5C" [Drosophila m 0.966 0.933 0.408 2.5e-56
FB|FBgn0000043376 Act42A "Actin 42A" [Drosophila 0.966 0.933 0.408 4.2e-56
UNIPROTKB|P60706375 ACTB "Actin, cytoplasmic 1" [G 0.966 0.936 0.406 4.2e-56
UNIPROTKB|P60712375 ACTB "Actin, cytoplasmic 1" [B 0.966 0.936 0.406 4.2e-56
UNIPROTKB|O18840375 ACTB "Actin, cytoplasmic 1" [C 0.966 0.936 0.406 4.2e-56
UNIPROTKB|P60709375 ACTB "Actin, cytoplasmic 1" [H 0.966 0.936 0.406 4.2e-56
UNIPROTKB|Q6QAQ1375 ACTB "Actin, cytoplasmic 1" [S 0.966 0.936 0.406 4.2e-56
UNIPROTKB|P29751375 ACTB "Actin, cytoplasmic 1" [O 0.966 0.936 0.406 4.2e-56
TAIR|locus:2101866 ARP7 "AT3G60830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1634 (580.3 bits), Expect = 5.2e-168, P = 5.2e-168
 Identities = 309/364 (84%), Positives = 340/364 (93%)

Query:     1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLV-EDVTVDPVVR 59
             MEA VVDAGSK LKAG AIPDQ+P+M+IPSQMKR+++DGSSS DN T V EDVT+DP+ R
Sbjct:     1 MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIER 60

Query:    60 GFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGF 119
             G IRDWDAMEDLL +V+Y GLGWEEGNEG ILFTDPLC+PKA+REQLVQLMFETFN+SGF
Sbjct:    61 GLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGF 120

Query:   120 YSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQE 179
             Y+SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV+EGAVQHIAS+RFE+GG +LTKL AQE
Sbjct:   121 YASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGGTELTKLFAQE 180

Query:   180 LGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYT 239
             LGKTNPS+NLS+ DVEKLKEQ++ CAEDE+AY+KTQ +CEIEQHTLPDGQVI IG+ERY+
Sbjct:   181 LGKTNPSMNLSMSDVEKLKEQYANCAEDEIAYKKTQ-NCEIEQHTLPDGQVISIGRERYS 239

Query:   240 VGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKE 299
             VGEALFQPSILGLE HGIVEQLV  ISTVSSENHRQLLENTVLCGGTTSMTGFE RFQKE
Sbjct:   240 VGEALFQPSILGLEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSMTGFESRFQKE 299

Query:   300 AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH 359
             A LCSSAIRPTLVKPPEYMPENL +YSAW+GGAILAKVVFPQNQH+TKADYDE+GPSVVH
Sbjct:   300 ANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVH 359

Query:   360 RKCF 363
             RKCF
Sbjct:   360 RKCF 363
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005634 "nucleus" evidence=IDA
GO:0006325 "chromatin organization" evidence=TAS
GO:0009653 "anatomical structure morphogenesis" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP
GO:0010227 "floral organ abscission" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0051301 "cell division" evidence=RCA
UNIPROTKB|F1MRD0 ACTB "Actin, cytoplasmic 1, N-terminally processed" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0000042 Act5C "Actin 5C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0000043 Act42A "Actin 42A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P60706 ACTB "Actin, cytoplasmic 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P60712 ACTB "Actin, cytoplasmic 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O18840 ACTB "Actin, cytoplasmic 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P60709 ACTB "Actin, cytoplasmic 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6QAQ1 ACTB "Actin, cytoplasmic 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P29751 ACTB "Actin, cytoplasmic 1" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6NVA9ACTB_XENTRNo assigned EC number0.39940.96960.9386yesno
P84185ACT5C_ANOGANo assigned EC number0.40210.96960.9361yesno
P63258ACTG_BOVINNo assigned EC number0.39680.96960.9386yesno
P63259ACTG_RATNo assigned EC number0.39680.96960.9386yesno
Q5R1X3ACTB_PANTRNo assigned EC number0.39940.96960.9386yesno
A2XMK6ARP7_ORYSINo assigned EC number0.72720.99171.0N/Ano
A3ANB5ARP7_ORYSJNo assigned EC number0.72720.99171.0yesno
P60712ACTB_BOVINNo assigned EC number0.39940.96960.9386yesno
P02572ACT2_DROMENo assigned EC number0.40210.96960.9361yesno
P60709ACTB_HUMANNo assigned EC number0.39940.96960.9386yesno
P60708ACTB_HORSENo assigned EC number0.39940.96960.9386yesno
P60706ACTB_CHICKNo assigned EC number0.39940.96960.9386yesno
P48975ACTB_CRIGRNo assigned EC number0.39940.96960.9386yesno
Q5ZMQ2ACTG_CHICKNo assigned EC number0.39680.96960.9386yesno
O18840ACTB_CANFANo assigned EC number0.39940.96960.9386yesno
Q6P378ACTG_XENTRNo assigned EC number0.39940.96960.9386yesno
P63260ACTG_MOUSENo assigned EC number0.39680.96960.9386yesno
P60710ACTB_MOUSENo assigned EC number0.39940.96960.9386yesno
P60711ACTB_RATNo assigned EC number0.39940.96960.9386yesno
Q8L4Y5ARP7_ARATHNo assigned EC number0.84610.99720.9972yesno
P29751ACTB_RABITNo assigned EC number0.39940.96960.9386yesno
Q6QAQ1ACTB_PIGNo assigned EC number0.39940.96960.9386yesno
P63261ACTG_HUMANNo assigned EC number0.39680.96960.9386yesno
P10987ACT1_DROMENo assigned EC number0.40210.96960.9361yesno
Q71FK5ACTB_CAVPONo assigned EC number0.39940.96960.9386yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028776001
SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (361 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
pfam00022367 pfam00022, Actin, Actin 7e-86
smart00268373 smart00268, ACTIN, Actin 2e-83
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 2e-76
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 5e-71
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 3e-58
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 1e-52
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 1e-50
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 1e-39
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 1e-13
COG0849418 COG0849, ftsA, Cell division ATPase FtsA [Cell div 2e-05
TIGR01174371 TIGR01174, ftsA, cell division protein FtsA 1e-04
pfam14450159 pfam14450, FtsA, Cell division protein FtsA 0.001
cd10227312 cd10227, ParM_like, Plasmid segregation protein Pa 0.002
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information 
 Score =  263 bits (675), Expect = 7e-86
 Identities = 140/372 (37%), Positives = 190/372 (51%), Gaps = 20/372 (5%)

Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDN-----STLVEDVTV-DP 56
           A V+D GS   KAG A  + AP  VIPS + R    G            +    + V  P
Sbjct: 5   ALVIDNGSGTTKAGFA-GEDAPRAVIPSVVGRPRGRGVMVKYYVGDEALSKRPGLEVRYP 63

Query: 57  VVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116
           +  G + +WDAME +  H  +  L  +   E  +L T+P  +P A RE+  ++MFETF +
Sbjct: 64  IEDGIVENWDAMEKIWEHTFFEELRVDP-EEHPLLLTEPPLNPPANREKATEIMFETFGV 122

Query: 117 SGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLL 176
              Y ++QAVLS YA GR +G  VD G G   + PV EG V   A RR ++ G DLT  L
Sbjct: 123 PALYLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDLAGDDLTDYL 182

Query: 177 AQELGKTNPSVNLS--LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQ--HTLPDGQVIR 232
            + L     S N       V  +KE  S C   +  +  T  S       + LPDG VI 
Sbjct: 183 RKLLSSRTYSFNTYAEEEVVRDIKE--SLCYVSDDPFGDTAASSSPPTVSYELPDGYVII 240

Query: 233 IGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGF 292
           +G ER+ V E LF PS++G E+ GI E +  +I+    +    LL N V+ GGTT   GF
Sbjct: 241 LGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGGTTLFPGF 300

Query: 293 EDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV-VFPQNQHITKADYD 351
            +R +KE     + + P+ VK     P N   YSAWIGG+ILA +  F Q   ++K +Y+
Sbjct: 301 TERLEKEL----AQLAPSGVKVKIIAPPNERKYSAWIGGSILASLGTFQQ-MWVSKQEYE 355

Query: 352 ESGPSVVHRKCF 363
           E G SVV RKCF
Sbjct: 356 EHGSSVVERKCF 367

Length = 367
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233300 TIGR01174, ftsA, cell division protein FtsA Back     alignment and domain information
>gnl|CDD|222760 pfam14450, FtsA, Cell division protein FtsA Back     alignment and domain information
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 100.0
PRK13929335 rod-share determining protein MreBH; Provisional 100.0
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 100.0
PRK13928336 rod shape-determining protein Mbl; Provisional 100.0
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.96
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.87
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.82
CHL00094 621 dnaK heat shock protein 70 99.74
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.73
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 99.73
PRK13411 653 molecular chaperone DnaK; Provisional 99.71
PRK13410 668 molecular chaperone DnaK; Provisional 99.71
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.7
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.7
PRK01433 595 hscA chaperone protein HscA; Provisional 99.7
PLN03184 673 chloroplast Hsp70; Provisional 99.7
PRK05183 616 hscA chaperone protein HscA; Provisional 99.7
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.69
PTZ00009 653 heat shock 70 kDa protein; Provisional 99.67
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 99.56
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 99.54
PRK11678450 putative chaperone; Provisional 99.53
PRK09472420 ftsA cell division protein FtsA; Reviewed 99.49
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 99.43
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 99.33
PRK13917344 plasmid segregation protein ParM; Provisional 99.31
COG4820277 EutJ Ethanolamine utilization protein, possible ch 99.23
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 99.22
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 99.15
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 99.1
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 99.01
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 98.81
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 98.73
PRK10719 475 eutA reactivating factor for ethanolamine ammonia 98.52
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 98.51
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 98.49
KOG0102 640 consensus Molecular chaperones mortalin/PBP74/GRP7 98.48
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 98.37
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 98.27
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 97.8
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 97.69
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 97.66
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 97.58
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 96.94
COG0248 492 GppA Exopolyphosphatase [Nucleotide transport and 96.68
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 96.46
PRK11031 496 guanosine pentaphosphate phosphohydrolase; Provisi 96.37
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 96.19
PRK10854 513 exopolyphosphatase; Provisional 95.66
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 95.07
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 94.99
PRK09557301 fructokinase; Reviewed 94.85
COG1548330 Predicted transcriptional regulator/sugar kinase [ 94.81
TIGR00744318 ROK_glcA_fam ROK family protein (putative glucokin 94.45
PF01869271 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In 94.37
PRK13317277 pantothenate kinase; Provisional 93.91
COG4819473 EutA Ethanolamine utilization protein, possible ch 91.59
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 90.93
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 90.77
PF07318343 DUF1464: Protein of unknown function (DUF1464); In 90.42
COG1521251 Pantothenate kinase type III (Bvg accessory factor 89.75
COG2441374 Predicted butyrate kinase [Energy production and c 87.41
PRK13324258 pantothenate kinase; Reviewed 86.57
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 85.5
PRK13321256 pantothenate kinase; Reviewed 84.37
KOG1385453 consensus Nucleoside phosphatase [Nucleotide trans 83.1
TIGR00671243 baf pantothenate kinase, type III. This model desc 81.42
PRK13318258 pantothenate kinase; Reviewed 80.45
>PTZ00452 actin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-85  Score=620.82  Aligned_cols=353  Identities=33%  Similarity=0.553  Sum_probs=324.1

Q ss_pred             ccEEEEcCCCcEEEeecCCCCCCceecccceeeccC----------CCccccCcccccC-Cce-eccccCCeecCHHHHH
Q 017944            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE----------DGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAME   69 (363)
Q Consensus         2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~----------~~~~g~~~~~~~~-~~~-~~p~~~g~i~~~~~~~   69 (363)
                      ++||||+||+++|+||| ||+.|++++||++++...          +.++| +++...+ .++ .+|+++|.|.|||.+|
T Consensus         6 ~~vViD~Gs~~~k~G~a-ge~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG-~~~~~~~~~~~l~~Pi~~G~I~dwd~~e   83 (375)
T PTZ00452          6 PAVVIDNGSGYCKIGIA-GDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVG-EEAQAKRGVLAIKEPIQNGIINSWDDIE   83 (375)
T ss_pred             CEEEEECCCCeEEEeeC-CCCCcCEEecceeEEECCccccccccccceEEC-hhhhccccCcEEcccCcCCEEcCHHHHH
Confidence            47999999999999999 999999999999976421          34678 7764444 445 4999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEE
Q 017944           70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI  149 (363)
Q Consensus        70 ~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v  149 (363)
                      .+|+|+|.+.|.+++ +++|+++++++++++..|++++|++||.|++|++++.++++|++|++|++||+|||+|++.|+|
T Consensus        84 ~iw~~~f~~~l~v~p-~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v  162 (375)
T PTZ00452         84 IIWHHAFYNELCMSP-EDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHC  162 (375)
T ss_pred             HHHHHHHHhhcCCCc-ccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceE
Confidence            999999998899999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCcc--ccHHHHHHHHHHcccccCC-HHHHHHhcc-cCCCceeEC
Q 017944          150 APVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVN--LSLYDVEKLKEQFSCCAED-ELAYEKTQK-SCEIEQHTL  225 (363)
Q Consensus       150 ~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~--~~~~~~~~iK~~~~~v~~~-~~~~~~~~~-~~~~~~~~l  225 (363)
                      +||+||+++.+++.++++||+++|++|.++|.++++++.  .+.++++++||++||++.| .++.+.... +...+.|+|
T Consensus       163 ~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~L  242 (375)
T PTZ00452        163 VPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKL  242 (375)
T ss_pred             EEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEEC
Confidence            999999999999999999999999999999988887763  3577899999999999988 344432222 223468999


Q ss_pred             CCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCC
Q 017944          226 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCS  304 (363)
Q Consensus       226 p~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~  304 (363)
                      |||+.+.++.||+.++|+||+|+++|.+..||+++|.++|++||+|+|+.|++||||+||+|++|||.+||++|| ++.|
T Consensus       243 PDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p  322 (375)
T PTZ00452        243 PDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVP  322 (375)
T ss_pred             CCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             CCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcccC
Q 017944          305 SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  363 (363)
Q Consensus       305 ~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~~  363 (363)
                      .+.++++.++++      |.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus       323 ~~~~v~v~~~~~------r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        323 SQLKIQVAAPPD------RRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             CCceeEEecCCC------cceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence            888999999888      99999999999999999999999999999999999999997

>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>PRK09557 fructokinase; Reviewed Back     alignment and domain information
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) Back     alignment and domain information
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis Back     alignment and domain information
>PRK13317 pantothenate kinase; Provisional Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length Back     alignment and domain information
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] Back     alignment and domain information
>COG2441 Predicted butyrate kinase [Energy production and conversion] Back     alignment and domain information
>PRK13324 pantothenate kinase; Reviewed Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00671 baf pantothenate kinase, type III Back     alignment and domain information
>PRK13318 pantothenate kinase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 1e-61
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 7e-61
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 1e-60
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 2e-60
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 2e-60
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 4e-60
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 5e-60
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 5e-60
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 2e-59
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 2e-59
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 2e-59
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 2e-59
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 3e-59
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 4e-59
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 4e-59
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 5e-59
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 5e-59
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 5e-59
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 5e-59
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 5e-59
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 5e-59
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 5e-59
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 5e-59
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 6e-59
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 7e-59
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 8e-59
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 1e-58
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 2e-58
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 2e-58
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 1e-56
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 1e-56
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 2e-56
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 7e-56
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 7e-56
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 1e-55
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 4e-55
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 6e-55
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 4e-52
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 7e-51
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 1e-39
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 3e-39
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 6e-24
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 4e-20
4i6m_B439 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 9e-12
3qb0_A 498 Crystal Structure Of Actin-Related Protein Arp4 Fro 6e-10
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure 
Iteration: 1

 Score =  233 bits (595), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 196/367 (53%), Gaps = 20/367 (5%)
Query: 3   AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFI 62
           A V D GS L+KAG A  D AP  V PS + RV ++  S     TL       P+  G I
Sbjct: 7   ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRVGDEAQSKRGILTLKY-----PIEHGII 60
Query: 63  RDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSS 122
            +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y +
Sbjct: 61  TNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVA 119
Query: 123 EQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 182
            QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L +
Sbjct: 120 IQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE 179
Query: 183 TNPSVNLSLYD--VEKLKEQFSCCA---EDELAYEKTQKSCEIEQHTLPDGQVIRIGKER 237
              S   +     V  +KE+    A   E+E+A   +  S E + + LPDGQVI IG ER
Sbjct: 180 RGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLE-KSYELPDGQVITIGNER 238
Query: 238 YTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQ 297
           +   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GGTT   G  DR Q
Sbjct: 239 FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQ 298
Query: 298 KE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPS 356
           KE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   ITK +YDE+GPS
Sbjct: 299 KEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMWITKQEYDEAGPS 352
Query: 357 VVHRKCF 363
           +VHRKCF
Sbjct: 353 IVHRKCF 359
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 1e-105
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 1e-104
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-93
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 3e-86
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 4e-52
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 3e-43
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 2e-09
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 2e-05
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 3e-04
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
 Score =  314 bits (807), Expect = e-105
 Identities = 107/387 (27%), Positives = 183/387 (47%), Gaps = 27/387 (6%)

Query: 1   MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVD----- 55
            +  V D G+  +K G A     P  + P+ + R     S++   +  ++D+ V      
Sbjct: 6   RKVVVCDNGTGFVKCGYA-GSNFPEHIFPALVGRP-IIRSTTKVGNIEIKDLMVGDEASE 63

Query: 56  ---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQL 106
                    P+  G +R+WD M+ L  +         +    +IL T+P  +P   RE++
Sbjct: 64  LRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKI 123

Query: 107 VQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFE 166
           V++MFET+  SG Y + QAVL+LYA G ++G  VD G G   I PV EG      +RR +
Sbjct: 124 VEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLD 183

Query: 167 VGGMDLTKLLAQELGKTNPSVN--LSLYDVEKLKEQFSCCAEDELAYEKT--QKSCEIEQ 222
           + G D+T+ L + L     + N       V  +KE+      +    +K   + +  +E 
Sbjct: 184 IAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVES 243

Query: 223 HTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVL 282
           +TLPDG++I++G ER+   EALFQP ++ +E  G+ E L +TI     +   +  ++ VL
Sbjct: 244 YTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVL 303

Query: 283 CGGTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLT-----LYSAWIGGAILAK 336
            GG+T   G   R ++E   L    +    V+        +       +  ++GGA+LA 
Sbjct: 304 SGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363

Query: 337 VV-FPQNQHITKADYDESGPSVVHRKC 362
           ++    N  +T+ +Y E G  V+ +  
Sbjct: 364 IMKDKDNFWMTRQEYQEKGVRVLEKLG 390
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 100.0
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.92
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.91
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.9
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.89
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.87
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.81
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.79
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.77
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.77
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.73
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.71
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 99.7
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 99.48
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 99.46
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 99.4
3js6_A355 Uncharacterized PARM protein; partition, segregati 99.34
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 98.73
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 98.66
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 98.19
1hux_A270 Activator of (R)-2-hydroxyglutaryl-COA dehydratase 97.51
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 97.0
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 96.74
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 96.54
2gup_A292 ROK family protein; sugar kinase, streptococcus pn 96.52
1u6z_A 513 Exopolyphosphatase; alpha/beta protein, askha (ace 96.35
3hi0_A 508 Putative exopolyphosphatase; 17739545, structural 96.31
4db3_A327 Glcnac kinase, N-acetyl-D-glucosamine kinase; stru 95.77
4htl_A297 Beta-glucoside kinase; structural genomics, sugar 95.77
3vgl_A321 Glucokinase; ROK family, transferase; HET: BGC ANP 95.54
2qm1_A326 Glucokinase; alpha-beta structure, putative helix- 95.47
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 95.36
3vov_A302 Glucokinase, hexokinase; ROK, sugar kinase, transf 94.94
3aap_A353 Ectonucleoside triphosphate diphosphohydrolase I; 94.27
2i7n_A360 Pantothenate kinase 1; PANK, transferase; HET: ACO 93.97
2hoe_A380 N-acetylglucosamine kinase; TM1224, structural gen 93.18
3r8e_A321 Hypothetical sugar kinase; ribonuclease H-like mot 92.98
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 91.75
3bex_A249 Type III pantothenate kinase; actin-like fold, ATP 90.42
3djc_A266 Type III pantothenate kinase; structural genomics, 90.32
2h3g_X268 Biosynthetic protein; pantothenate kinase, anthrax 90.11
3zx3_A452 Ectonucleoside triphosphate diphosphohydrolase 1; 89.87
3cj1_A456 Ectonucleoside triphosphate diphosphohydrolase 2; 86.97
1zbs_A291 Hypothetical protein PG1100; alpha-beta protein., 85.36
3epq_A302 Putative fructokinase; SCRK, ADP binding, PSI2, MC 84.71
2ap1_A327 Putative regulator protein; zinc binding protein, 84.45
1zc6_A305 Probable N-acetylglucosamine kinase; NESG, Q7NU07_ 83.9
2ch5_A347 NAGK protein; transferase, N-acetylglucosamine, gl 81.44
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=2.1e-83  Score=613.75  Aligned_cols=352  Identities=28%  Similarity=0.434  Sum_probs=307.1

Q ss_pred             ccEEEEcCCCcEEEeecCCCCCCceecccceeeccC--------------------------------CCccccCccccc
Q 017944            2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE--------------------------------DGSSSVDNSTLV   49 (363)
Q Consensus         2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~--------------------------------~~~~g~~~~~~~   49 (363)
                      ++||||+||+++|+||| ||+.|++++||++++...                                +.++| +++...
T Consensus         6 ~~iViDnGs~~~KaG~a-g~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG-~ea~~~   83 (427)
T 3dwl_A            6 VPIIMDNGTGYSKLGYA-GNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIG-NDALKK   83 (427)
T ss_dssp             SCEEECCCSSBC-CEET-TSSSCSCCCBCCEECC------------------------------CCSSCCEET-HHHHHT
T ss_pred             CeEEEECCCCeEEEEEC-CCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEc-hHHhhC
Confidence            68999999999999999 999999999999976421                                35788 877555


Q ss_pred             C--Cce-eccccCCeecCHHHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchh
Q 017944           50 E--DVT-VDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAV  126 (363)
Q Consensus        50 ~--~~~-~~p~~~g~i~~~~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~  126 (363)
                      +  .+. +||+++|.|.|||.+|++|+|+|.+.|++++ .++|+++++|+++++..|++++|++||.|++|+++++.+++
T Consensus        84 ~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~-~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~v  162 (427)
T 3dwl_A           84 ASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEP-EDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAV  162 (427)
T ss_dssp             HHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCG-GGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHH
T ss_pred             cccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCC-cCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHH
Confidence            4  344 5999999999999999999999999999998 89999999999999999999999999999999999999999


Q ss_pred             hhhccCC--------CceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHH
Q 017944          127 LSLYAVG--------RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLK  198 (363)
Q Consensus       127 ~a~~~~g--------~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK  198 (363)
                      ||+|++|        .++|+|||+|++.|+|+||++|+++.++++++++||+++|++|.++|+++++. ..+.+++++||
T Consensus       163 la~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~-~~~~~~~~~IK  241 (427)
T 3dwl_A          163 LALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP-DSSLKTAERIK  241 (427)
T ss_dssp             HHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC---------CHHHHHHH
T ss_pred             HHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC-chhHHHHHHHH
Confidence            9999998        68999999999999999999999999999999999999999999999988776 56788999999


Q ss_pred             HHcccccCC-HHHHHHhcccC-CCceeEC--CCCc--EEEEeceeccccccccCCCCCCcc-cccHHHHHHHHHHcCChh
Q 017944          199 EQFSCCAED-ELAYEKTQKSC-EIEQHTL--PDGQ--VIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSE  271 (363)
Q Consensus       199 ~~~~~v~~~-~~~~~~~~~~~-~~~~~~l--p~~~--~i~i~~~r~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~~  271 (363)
                      +++||++.| .++++...... ..+.|.+  |||.  .+.++.|||+++|+||+|++++.+ ..+|+++|.++|++||+|
T Consensus       242 e~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~d  321 (427)
T 3dwl_A          242 EECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPID  321 (427)
T ss_dssp             HHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHH
T ss_pred             HhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHH
Confidence            999999998 55555432221 2367778  8887  788899999999999999999988 489999999999999999


Q ss_pred             HHHHhhcCeEEccCcccccchHHHHHhhh-ccC--------------CCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944          272 NHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC--------------SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK  336 (363)
Q Consensus       272 ~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~--------------~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~  336 (363)
                      +|+.|++|||||||+|++|||.+||++|| ++.              |..++++|.++|+      |.+++|+||||+|+
T Consensus       322 lr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~------r~~s~WiGGSilas  395 (427)
T 3dwl_A          322 VRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKR------QRNAVWFGGSLLAQ  395 (427)
T ss_dssp             HHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTT------CTTHHHHHHHHHHH
T ss_pred             HHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCc------cccceecCceeecc
Confidence            99999999999999999999999999999 765              5567899999998      99999999999999


Q ss_pred             cCCCCceeeehHHHhhcCccchhcccC
Q 017944          337 VVFPQNQHITKADYDESGPSVVHRKCF  363 (363)
Q Consensus       337 l~~~~~~~itk~ey~e~G~~~~~rk~~  363 (363)
                      +++|+++||||+||+|+|+++++||++
T Consensus       396 l~~f~~~witk~EYeE~G~~iv~~~~~  422 (427)
T 3dwl_A          396 TPEFGSYCHTKADYEEYGASIARRYQI  422 (427)
T ss_dssp             STTHHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred             ccchhheeEEHHHHhhhChHhheeccc
Confidence            999999999999999999999999974
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} Back     alignment and structure
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} Back     alignment and structure
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Back     alignment and structure
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} Back     alignment and structure
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A* Back     alignment and structure
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Back     alignment and structure
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A* Back     alignment and structure
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A* Back     alignment and structure
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 2e-59
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 9e-49
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 5e-37
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 4e-27
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 6e-27
d1e4ft2191 c.55.1.1 (T:200-390) Cell division protein FtsA {T 2e-04
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  189 bits (481), Expect = 2e-59
 Identities = 86/231 (37%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 134 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS--L 191
           R +G  +D G G     P+ EG     A  R ++ G DLT  L + L +   S   +   
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60

Query: 192 YDVEKLKEQFSCCAEDELAYEKT--QKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSI 249
             V  +KE+    A D      T    S   + + LPDGQVI IG ER+   E LFQPS 
Sbjct: 61  EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSF 120

Query: 250 LGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIR 308
           +G+E+ GI E   ++I     +  + L  N V+ GGTT   G  DR QKE   L  S ++
Sbjct: 121 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMK 180

Query: 309 PTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH 359
             ++ PPE        YS WIGG+ILA +   Q   ITK +YDE+GPS+VH
Sbjct: 181 IKIIAPPERK------YSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 225
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.97
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.96
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.52
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 99.32
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 99.04
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 98.83
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.8
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 98.52
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 98.26
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.14
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 97.88
d2d0oa3203 Diol dehydratase-reactivating factor large subunit 95.37
d1nbwa3202 ATPase domain of the glycerol dehydratase reactiva 94.94
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 92.18
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 91.81
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 91.44
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 91.32
d2i7na2212 Pantothenate kinase 1, PANK1 {Human (Homo sapiens) 90.46
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 89.72
d2aa4a2170 N-acetylmannosamine kinase NanK {Escherichia coli 85.45
d2ap1a1186 Putative regulator protein YcfX {Salmonella typhim 85.25
d1zc6a1114 Probable N-acetylglucosamine kinase CV2896 {Chromo 83.77
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 82.57
d2ch5a2117 N-acetylglucosamine kinase, NAGK {Human (Homo sapi 82.47
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-54  Score=377.51  Aligned_cols=220  Identities=39%  Similarity=0.603  Sum_probs=203.4

Q ss_pred             CceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHcccccCC-HHH
Q 017944          134 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELA  210 (363)
Q Consensus       134 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~--~~~~~~~~~iK~~~~~v~~~-~~~  210 (363)
                      ++||||||+|++.|+|+||+||+++.++++++++||++++++|+++|.+++++.  ..+.+.++.+|+.+|+++.+ ..+
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e   80 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE   80 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence            579999999999999999999999999999999999999999999999988776  34677999999999999998 333


Q ss_pred             HHHhc-ccCCCceeECCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccc
Q 017944          211 YEKTQ-KSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSM  289 (363)
Q Consensus       211 ~~~~~-~~~~~~~~~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l  289 (363)
                      ..... .+.....|.+|||+.+.++.+|+.++|+||+|..++.+..+|+++|.++|.+||.|.|+.|++||+|+||+|++
T Consensus        81 ~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~  160 (225)
T d2fxua2          81 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY  160 (225)
T ss_dssp             HHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred             HhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccC
Confidence            33322 23345789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHhhh-ccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchh
Q 017944          290 TGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH  359 (363)
Q Consensus       290 ~G~~~rL~~eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~  359 (363)
                      |||.+||++|| ++.+...++++..+++      |++++|+|||++|++++|+++||||+||+|+|+++||
T Consensus       161 ~G~~~RL~~El~~~~~~~~~~~v~~~~~------~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         161 PGIADRMQKEITALAPSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             TTHHHHHHHHHHHHSCTTCCCCEECCTT------TTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             CchhHHHHhHHHHhhccccceEEecCCC------CCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            99999999999 8888888999999988      9999999999999999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} Back     information, alignment and structure
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure