Citrus Sinensis ID: 017948

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLEFAGQSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSYSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDDKKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQGSALDQNKV
Secondary Structure (PSIPRED)
cccccccEEEcccccccccccccccccccHHHHHHHHcccccEEEEEEccccccEEcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccEEccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEccccccHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccEEEccccccccccccccccccccccccHcHccccccccEEEEccccccccccccccccccccccccccEEEEccccccHccccccccc
Coil and Loop (DISEMBL)
MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDivllmfsptgrstlfhgqrSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQVRILQAQLTEVHQRLsywsnpgniesIEHLRQMENSLRESINQICLHKENFGKQQLMSLEFagqsgmhlpLMMNVMQenqslswlpnndnqhmlvpndpsflpqrdmgcsedahissysgflgagkeievgnsgqvenmehgggnlnelsnnacislqlgeqysyppysslnlpsddkklkpdaemnlqgnpavyqvnsnfelsgpmygnghhdwvsasgpcgiamfdensyhqgsaldqnkv
Flexible Loop (DISEMBL)
mgrvklkikrlestsnrqvtyskrrngilkkarelSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARfaqltpqerAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLEFAGQSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSYSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDDKKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHqgsaldqnkv
Low Complexity Region (SEG)
MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLEFAGQSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSYSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQysyppysslnlpsDDKKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQGSALDQNKV
Disordered region (IsUnstruct)
*************************NGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL**************ALKKTFKKLDHDVNIQDFLGASTQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLR*****LRESINQICLHKENFGKQQLMSLEFAGQSGMHLPLMMN*******************************************YSGFLG****************************NACISLQLGEQY******************************VYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFD***************
Disordered Region (DISOPRED)
MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL****************************************************************SNPGNIESIEHLRQMENSLRESINQICLHK*************************************************************************************************************************SLNLPS*****************AVYQVNSNFEL************VSASGPCGIAMFDENSYHQG********
Disordered Region (DISEMBL)
MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLEFAGQSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSYSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDDKKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQGSALDQNKV
Disordered Region (DISPRO)
****KLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLEFAGQSGMHLPLMMNVMQEN*SLSW***********PNDPSFLPQRDMGCSEDAHISSYSGFLGAGKE******************LNELSNNACISLQLGEQYSYPPYSSLNLPSDDKKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYH**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPxxxxxxxxxxxxxxxxxxxxxDHDVNIQDFLGASTQTxxxxxxxxxxxxxxxxxxxxxLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLEFAGQSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSYSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDDKKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQGSALDQNKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.484	0.742	0.326	3e-17
Q944S9	224	MADS-box transcription fa	no	no	0.201	0.325	0.520	3e-16
Q84NC5	227	MADS-box transcription fa	no	no	0.269	0.431	0.425	1e-15
P29386	252	Agamous-like MADS-box pro	no	no	0.451	0.650	0.340	1e-15
Q6Z6W2	241	MADS-box transcription fa	no	no	0.473	0.713	0.338	2e-15
P29383	258	Agamous-like MADS-box pro	no	no	0.360	0.507	0.355	3e-15
O82743	219	Agamous-like MADS-box pro	no	no	0.465	0.771	0.318	4e-15
Q40704	236	MADS-box transcription fa	no	no	0.190	0.292	0.507	5e-15
O64645	214	MADS-box protein SOC1 OS=	no	no	0.396	0.672	0.341	7e-15
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.192	0.291	0.513	8e-15

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 112/199 (56%), Gaps = 23/199 (11%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGR K++IKR+E+T+NRQVT+SKRR G+LKKA ELS+LCD ++ L++FS +G+   +   
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61  RSNIEEVIARF-----AQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGA--STQT 113
            S+++++I R+     A++T  +      E +  +K   +KL    NI+  +G   ++ T
Sbjct: 61  SSSMKKIIERYQKVSGARITEYDNQHLYCE-MTRMKNENEKL--QTNIRRMMGEDLTSLT 117

Query: 114 VEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGK 173
           + EL H    L  QL     R+    N   ++ +E+LR+ E  L +  + +C        
Sbjct: 118 MTELHH----LGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLC-------- 165

Query: 174 QQLMSLEFAGQSGMHLPLM 192
            +L++ + A   G+  PL+
Sbjct: 166 -RLLAEQQAAVEGVQEPLL 183

Probable transcription factor.
Gnetum gnemon (taxid: 3382)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
          MGR K++IKR+E+ +NRQVTYSKRR GI+KKAREL++LCD  + ++MFS TG+   F   
Sbjct: 1  MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSP 60

Query: 61 RSNIEEVIARFAQ 73
           ++I+ +  R+ Q
Sbjct: 61 STDIKGIFDRYQQ 73

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84NC5|MAD25_ORYSJ MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 69/108 (63%), Gaps = 10/108 (9%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGR K+ IKR+++T NRQVT+SKRR G++KKAREL+ILCD D+ L++FS TGR  L+   
Sbjct: 1   MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGR--LYDFS 58

Query: 61  RSNIEEVIARFAQ--------LTPQERAKRKLESLEALKKTFKKLDHD 100
            S+++ +I R+ +        L P   AK     +  L++  + L H+
Sbjct: 59  SSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHN 106

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 95/182 (52%), Gaps = 18/182 (9%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGR ++++KR+E+  NRQVT+SKRRNG+LKKA ELS+LCD ++ L++FS  G+  L+   
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGK--LYEFG 58

Query: 61  RSNIEEVIARFAQL--------TPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGAS-- 110
              IE  I R+ +          P+E  +   + +  LK  ++ L      ++ LG    
Sbjct: 59  SVGIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVR--TNRNLLGEDLG 116

Query: 111 TQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKEN 170
              V+EL    R L+A LT   QR         +E +E LR+ E  L +   Q+ +  E 
Sbjct: 117 EMGVKELQALERQLEAALTATRQR----KTQVMMEEMEDLRKKERQLGDINKQLKIKFET 172

Query: 171 FG 172
            G
Sbjct: 173 EG 174

Probable transcription factor. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z6W2|MAD57_ORYSJ MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 107/204 (52%), Gaps = 32/204 (15%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGR K+ I+R++++++RQVT+SKRRNG+LKKA+ELSILCD ++ L++FS TGR  L+   
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGR--LYEFS 58

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
            +N++ VI R+        AK +L    A          ++ I     AS      L  Q
Sbjct: 59  STNMKTVIDRYTN------AKEELLGGNA--------TSEIKIWQREAAS------LRQQ 98

Query: 121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLE 180
           +  LQ    E H++L      G    +  L+ +EN L  S+  I + K+N  K ++  L 
Sbjct: 99  LHNLQ----ESHKQLMGEELSG--LGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELH 152

Query: 181 FAG----QSGMHLPLMMNVMQENQ 200
             G    Q  + L   +NVM + +
Sbjct: 153 VKGSLIHQENIELSRSLNVMSQQK 176

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29383|AGL3_ARATH Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 35/166 (21%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGR K+++KR+E+  NRQVT++KRRNG+LKKA ELS+LCD +I LL+FS  G+   F   
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  RSNIEEVIAR-----FAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVE 115
            S +   + +     +A + P + AK                D     QD+L   ++ VE
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAK----------------DLQDKYQDYLKLKSR-VE 103

Query: 116 ELTHQVR-ILQAQLTEVHQRLSYWSNPGNIESIEHL-RQMENSLRE 159
            L H  R +L  +L+E+           ++  +EHL RQ++ SLR+
Sbjct: 104 ILQHSQRHLLGEELSEM-----------DVNELEHLERQVDASLRQ 138

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 38/207 (18%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           M R K ++KR+E+ ++RQVT+SKRRNG+LKKA ELS+LCD ++ L++FSP  RS L+   
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSP--RSKLYEFS 58

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
            S+I   I R+     Q R K        +    K+ D+    +D     T+ +E+L   
Sbjct: 59  SSSIAATIERY-----QRRIK-------EIGNNHKRNDNSQQARDETSGLTKKIEQLEIS 106

Query: 121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLE 180
            R L  +  +               SIE L+Q+EN L  S+++I   K    ++++  L+
Sbjct: 107 KRKLLGEGIDAC-------------SIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLK 153

Query: 181 FAGQSGMHLPLMMNVMQENQSL--SWL 205
              +         N+++EN+ L   WL
Sbjct: 154 AEER---------NLVKENKDLKEKWL 171

Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 55/71 (77%), Gaps = 2/71 (2%)

Query: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
          MGR K++IKR+E+T+NRQVT+ KRRNG+LKKA ELS+LCD ++ L++FS  GR  L+   
Sbjct: 1  MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR--LYEYA 58

Query: 61 RSNIEEVIARF 71
           ++++  + R+
Sbjct: 59 NNSVKSTVERY 69

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 100/173 (57%), Gaps = 29/173 (16%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           M R K ++KR+E+ ++RQVT+SKRRNG+LKKA ELS+LCD ++ L++FSP G+  L+   
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGK--LYEFA 58

Query: 61  RSNIEEVIARFAQLTPQERAKRKL--ESLEALK----KTFKKLDH-DVNIQDFLGA--ST 111
            SN+++ I R+ + T    + + +  E+++ LK       KK++  + + +  LG    T
Sbjct: 59  SSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGT 118

Query: 112 QTVEELTH-------QVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSL 157
            ++EEL          V+ ++A+ T+V +           E IE L+Q E +L
Sbjct: 119 CSIEELQQIEQQLEKSVKCIRARKTQVFK-----------EQIEQLKQKEKAL 160

Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.

Arabidopsis thaliana (taxid: 3702)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 58/72 (80%), Gaps = 2/72 (2%)

Query: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
          MGR K+ IKR+ ++++RQVT+SKRRNG+LKKA+EL+ILCD ++ +++FS TGR  L+   
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGR--LYDFS 58

Query: 61 RSNIEEVIARFA 72
           S+++ VI R++
Sbjct: 59 SSSMKSVIERYS 70

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
359491700	375	PREDICTED: myocyte-specific enhancer fac	0.980	0.949	0.740	1e-155
255547369	363	mads box protein, putative [Ricinus comm	0.969	0.969	0.716	1e-145
147843385	465	hypothetical protein VITISV_038034 [Viti	0.909	0.709	0.643	1e-134
356565105	364	PREDICTED: MADS-box protein ZMM17-like [	0.958	0.956	0.617	1e-121
356513523	356	PREDICTED: uncharacterized protein LOC10	0.961	0.980	0.596	1e-119
449439627	363	PREDICTED: uncharacterized protein LOC10	0.972	0.972	0.570	1e-112
224098892	363	predicted protein [Populus trichocarpa]	0.972	0.972	0.566	1e-110
343160541	361	MADS1 protein [Eschscholzia californica]	0.939	0.944	0.605	1e-110
449518223	364	PREDICTED: LOW QUALITY PROTEIN: MADS-box	0.972	0.969	0.560	1e-109
343160577	349	MADS1 protein [Aristolochia fimbriata] g	0.944	0.982	0.585	1e-108

>gi|359491700|ref|XP_002281961.2| PREDICTED: myocyte-specific enhancer factor 2A homolog [Vitis vinifera] gi|297733964|emb|CBI15211.3| unnamed protein product [Vitis vinifera]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/359 (74%), Positives = 306/359 (85%), Gaps = 3/359 (0%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDI+I+LLMFSPTGR TLFHG 
Sbjct: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIEIILLMFSPTGRPTLFHGA 60

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
           RS+IEEVIA+FAQLTPQERAKRKLESLEALKKTFKKLDHDVN+QDFLGASTQT+EELT+Q
Sbjct: 61  RSDIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNLQDFLGASTQTIEELTNQ 120

Query: 121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLE 180
            R+LQAQLTEVH+RLSYWSNP  ++S EHLRQME+SLRES+N+I +HKENFGK QLMSLE
Sbjct: 121 ARLLQAQLTEVHKRLSYWSNPDKVDSTEHLRQMEDSLRESLNRIRVHKENFGKHQLMSLE 180

Query: 181 FAG--QSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSY 238
            A   Q+GMHLPL+M+ +QE Q LSWLPNN+NQH+++P +PS+LPQRDM CS DA I  Y
Sbjct: 181 CASQFQNGMHLPLIMDGVQEAQPLSWLPNNENQHLILPEEPSYLPQRDMECSADASIPGY 240

Query: 239 SGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDDK 298
           SG+   GK+ E+GNSGQV+     G  LN+LS N+ + LQL EQY Y P+ +LNLP D+K
Sbjct: 241 SGYYSTGKQTEIGNSGQVDEQGQEGSALNQLSGNSNLRLQLSEQYLYSPFGNLNLP-DEK 299

Query: 299 KLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQGSA 357
           KLKP+ EMNLQGNP  YQVN NFE+  P+Y N  H WVSASGPC IAMFDENS+ QG+ 
Sbjct: 300 KLKPEMEMNLQGNPVDYQVNGNFEIPAPIYDNRQHTWVSASGPCSIAMFDENSFSQGNV 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547369|ref|XP_002514742.1| mads box protein, putative [Ricinus communis] gi|223546346|gb|EEF47848.1| mads box protein, putative [Ricinus communis]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/356 (71%), Positives = 295/356 (82%), Gaps = 4/356 (1%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGRVKLKIKRLESTSNRQVTYSKRRNGILKKA+ELSILCDI IVLLMFSPTG+ TLFHG 
Sbjct: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGKPTLFHGD 60

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
            SNIE+VIA+F+QLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLG+S QTVEELT Q
Sbjct: 61  HSNIEDVIAKFSQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGSS-QTVEELTDQ 119

Query: 121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLE 180
           VR++QAQLTEV QRLSYWS+P  ++ IEHLRQME+SL+ESINQ+ +HKE+ GK QLM LE
Sbjct: 120 VRLMQAQLTEVQQRLSYWSDPDKVDRIEHLRQMEDSLKESINQLRMHKEDIGKCQLMPLE 179

Query: 181 FAG--QSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSY 238
                QSG+ LP M+N +QE Q LSWLPNN NQH+++ N+PSFLPQRD+ C+ +A +  Y
Sbjct: 180 CNNQFQSGIALPYMINGLQEAQPLSWLPNNGNQHLIISNEPSFLPQRDIECTTNASLPGY 239

Query: 239 SGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDDK 298
           SGF   GK+ E+G  G V+NM   GG L  LS+N C+++QL EQ+ YPPYSSLNLP D K
Sbjct: 240 SGFYDTGKQTEIGKPGPVDNMGQEGGALRSLSSNTCLNVQLDEQFLYPPYSSLNLP-DVK 298

Query: 299 KLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQ 354
           ++KP+ +MN QGN  VYQVNSNFEL  PMY N HH W SASGPC IAMF+EN YHQ
Sbjct: 299 EVKPEMQMNNQGNHTVYQVNSNFELPRPMYDNEHHTWFSASGPCSIAMFNENPYHQ 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843385|emb|CAN79983.1| hypothetical protein VITISV_038034 [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/381 (64%), Positives = 281/381 (73%), Gaps = 51/381 (13%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDI+I+LLMFSPTGR TLFHG 
Sbjct: 79  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIEIILLMFSPTGRPTLFHGA 138

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLE----------------------ALKKTFKKLD 98
           RSNIEEVIA+FAQLTPQERAKRKLESLE                      ALKKTFKKLD
Sbjct: 139 RSNIEEVIAKFAQLTPQERAKRKLESLEVCSSHNLSFQIRFLFILFFMHQALKKTFKKLD 198

Query: 99  HDVNIQDFLGASTQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLR 158
           HDVN+QDFLGA                          SYWSNP  ++S EHLRQME+SLR
Sbjct: 199 HDVNLQDFLGA--------------------------SYWSNPDKVDSTEHLRQMEDSLR 232

Query: 159 ESINQICLHKENFGKQQLMSLEFAG--QSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVP 216
           ES+N+I +HKENFGK QLMSLE A   Q+GMHLPL+M+ +QE Q LSWLPNN+NQH+++P
Sbjct: 233 ESLNRIRVHKENFGKHQLMSLECASQFQNGMHLPLIMDGVQEAQPLSWLPNNENQHLILP 292

Query: 217 NDPSFLPQRDMGCSEDAHISSYSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACIS 276
            +PS+LPQRDM CS DA I  YSG+   GK+ E+GNSGQV+     G  LN+LS N+ + 
Sbjct: 293 EEPSYLPQRDMECSADASIPGYSGYYSTGKQTEIGNSGQVDEQGQEGSALNQLSGNSNLR 352

Query: 277 LQLGEQYSYPPYSSLNLPSDDKKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWV 336
           LQL EQY Y P+ ++NLP D+KKLKP+ EMNLQGNP  YQVN NFE+  P+Y N  H WV
Sbjct: 353 LQLSEQYLYSPFGNMNLP-DEKKLKPEMEMNLQGNPVDYQVNGNFEIPAPIYDNRQHTWV 411

Query: 337 SASGPCGIAMFDENSYHQGSA 357
           SASGPC IAMFDENS+ QG+ 
Sbjct: 412 SASGPCSIAMFDENSFSQGNV 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565105|ref|XP_003550785.1| PREDICTED: MADS-box protein ZMM17-like [Glycine max]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/358 (61%), Positives = 278/358 (77%), Gaps = 10/358 (2%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGRVKLKIK+LES SNR VTYSKR++GI+KKA+ELSILCDIDI+LLMFSPTG+ TL  G+
Sbjct: 1   MGRVKLKIKKLESISNRHVTYSKRKSGIIKKAKELSILCDIDIILLMFSPTGKPTLLQGE 60

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
           RSNIEEVIA+FAQL+PQERAKRK+ESLEALKKTFKKLDHDV IQDFLG+S QT+EEL+HQ
Sbjct: 61  RSNIEEVIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSS-QTMEELSHQ 119

Query: 121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLE 180
           V++LQA +TEV QRLSYW+N   I ++EHLRQME+SLRESIN++ L KEN GK QL+SLE
Sbjct: 120 VKVLQAHITEVQQRLSYWNNLEKINNLEHLRQMEDSLRESINRVSLQKENLGKHQLISLE 179

Query: 181 FAG--QSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSY 238
            A   Q GM LPLMM  +QE+Q LSWL NNDN  +++PN+P FL  RD+ CS D  + +Y
Sbjct: 180 CANQLQEGMTLPLMMTSLQESQPLSWLLNNDNHQLMLPNEPKFLSFRDVECSTDISLPNY 239

Query: 239 SGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDDK 298
            G +G+ K +EVG+S QV  M  GGG +NEL+    +++Q  +Q++YPP      P D +
Sbjct: 240 FGHIGSNK-LEVGSSPQVTTMGQGGGTMNELNGTTYLNVQHCDQFAYPP------PPDIE 292

Query: 299 KLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQGS 356
           ++K    M+ + N   YQVN+NF+L   ++ NGH  W SASG CGIAM++EN YH+ S
Sbjct: 293 EVKHFPSMDNKSNIVDYQVNNNFDLPRSLFENGHQFWNSASGSCGIAMYNENDYHRVS 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513523|ref|XP_003525463.1| PREDICTED: uncharacterized protein LOC100787065 [Glycine max]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/359 (59%), Positives = 281/359 (78%), Gaps = 10/359 (2%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGRVKLKIK+LES SNR VTYSKR++GI+KKA+ELSILCDID+VLLMFSPTG+ TL  G+
Sbjct: 1   MGRVKLKIKKLESISNRHVTYSKRKSGIIKKAKELSILCDIDVVLLMFSPTGKPTLLQGE 60

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
           RSNIEE+IA+FAQL+PQERAKRK+ESLEALKKTF+KLDHDV IQDFLG S+QT+EEL++Q
Sbjct: 61  RSNIEEIIAKFAQLSPQERAKRKMESLEALKKTFRKLDHDVKIQDFLG-SSQTMEELSYQ 119

Query: 121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLE 180
           V++LQAQ+TEV QRLSYW+N   I ++EHLRQME+SLRESIN++ L KEN GK +L+SLE
Sbjct: 120 VKVLQAQITEVQQRLSYWNNLEKINNLEHLRQMEDSLRESINRVGLQKENLGKHKLISLE 179

Query: 181 FAG--QSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSY 238
            A   Q GM LP M+  +Q++Q LSWL N+DN H+++PN+P F   RD+ CS D  + +Y
Sbjct: 180 CANQLQEGMALPSMIASLQDSQPLSWLLNDDNHHLMLPNEPKFQSFRDVECSTDISLPNY 239

Query: 239 SGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDDK 298
           SG++G+ K  EVG+S QV  +  GGG +NEL+    +++Q  +Q++YPP      P D +
Sbjct: 240 SGYIGSNK-FEVGSSPQVTTLGQGGGAMNELNGTTFLNVQCCDQFAYPP------PPDIE 292

Query: 299 KLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQGSA 357
           ++K    M+ + N   YQV++NF+L   ++ NGH  W SASG CGIAMF+EN+YH+ S+
Sbjct: 293 EVKQFPTMDNKSNTVDYQVHNNFDLPRSLFENGHQFWNSASGSCGIAMFNENNYHKVSS 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439627|ref|XP_004137587.1| PREDICTED: uncharacterized protein LOC101220182 [Cucumis sativus]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/361 (57%), Positives = 256/361 (70%), Gaps = 8/361 (2%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGRVKLKIK+LEST +RQVTYSKRRNGI+KKAREL+ILCDIDIVLLMFSP+G+  L+ G+
Sbjct: 1   MGRVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALYEGE 60

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
           RSNIEEVI +FA+LTPQERAKRK+ESLE LKKTFKKLDHDVNI DF+G+S+Q  EELT++
Sbjct: 61  RSNIEEVITKFAELTPQERAKRKMESLEVLKKTFKKLDHDVNIDDFVGSSSQDFEELTNE 120

Query: 121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLE 180
             +L+ Q+ E H+RLSYW NP +I +++ L+QME+ LRES+NQ  LHKEN  + QL+S +
Sbjct: 121 ASLLRDQIGETHKRLSYWRNPDSINNVDQLQQMEDLLRESLNQTRLHKENLRRHQLLSQD 180

Query: 181 FAGQ---SGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISS 237
           F GQ   +GM LPL+M  MQ  Q L WL N   Q + +PN+PSFL   D+ CS      S
Sbjct: 181 FTGQYSCAGMSLPLLMEEMQGTQPLLWLANYGTQQIPLPNEPSFLQPGDVECS----FPS 236

Query: 238 YSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDD 297
           Y  F   GK+IE G SGQV++M  G G LNELS  +C +LQL +QY YP     N   D+
Sbjct: 237 YPSFFNPGKQIEAGISGQVDSMPQGDGALNELSGTSCSTLQLSDQYPYPTCDGSNF-QDE 295

Query: 298 KKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQGSA 357
           K+LK + EMNL       Q+N   ELS  +Y +  H W S  GPC I M+  N YH   +
Sbjct: 296 KRLKMEMEMNLHAACVDTQLNDRLELSRSLYDDNQHPWASIPGPCSIPMYQSNEYHHVGS 355

Query: 358 L 358
           L
Sbjct: 356 L 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098892|ref|XP_002311308.1| predicted protein [Populus trichocarpa] gi|222851128|gb|EEE88675.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/360 (56%), Positives = 260/360 (72%), Gaps = 7/360 (1%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGRVKLKIK+LE+T+ RQ TY+KR++GI+KKA ELSILCDIDI+LLMFSPTG+ +L  G 
Sbjct: 1   MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCKGA 60

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
            S+IEEVI +FAQLTPQERAKRKLESLEALKKTFKKLDHDVNI +FLG S+QT+E+LT Q
Sbjct: 61  SSSIEEVITKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIPEFLGTSSQTIEDLTSQ 120

Query: 121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLE 180
            R+LQ QL++VH++LSYW+NP  I S+EHL Q+E+SLRES+N+I  HKE+ GKQ LMSLE
Sbjct: 121 SRLLQNQLSDVHKKLSYWTNPDEISSLEHLGQLESSLRESLNRIRSHKEHLGKQHLMSLE 180

Query: 181 FAG--QSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSY 238
                Q+ MH+P  M V Q+   +SW+PN D+QH+++P DP+ LP RD  CS      SY
Sbjct: 181 CHSQFQNAMHVPFRMGVEQQLPPISWIPNTDSQHIMLPEDPNLLPHRDAECSATTSFGSY 240

Query: 239 SGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYS-SLNLPSDD 297
           SG+ GAGK  E+ +SGQ   M    G L+E +  A + LQ+  QY Y P S +LNL  +D
Sbjct: 241 SGYFGAGKNSELSSSGQESGM---NGILDEFNGTASLRLQMAGQYPYLPGSYNLNL-LND 296

Query: 298 KKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQGSA 357
            K +P AEM  Q +P  + VN +FE   P Y +    W S  G C + MFD++ Y Q +A
Sbjct: 297 SKFQPAAEMKTQKSPEDFHVNGSFEAPKPGYDSTPCGWASTPGSCAVTMFDDHLYSQENA 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343160541|emb|CAX16990.1| MADS1 protein [Eschscholzia californica] gi|343160543|emb|CAX16991.1| MADS1 protein [Eschscholzia californica]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/352 (60%), Positives = 261/352 (74%), Gaps = 11/352 (3%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGRVKLKIKRLE+TS RQVTYSKRR GILKKARELSILCDIDI LLMFSPTG+ TL  G 
Sbjct: 1   MGRVKLKIKRLENTSGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGKPTLCLGD 60

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
           RSNIE+VIA+FAQLTPQERAKRKLESLEALKKTFKKL+HDVNIQDFLG STQTVE+LT+Q
Sbjct: 61  RSNIEDVIAKFAQLTPQERAKRKLESLEALKKTFKKLEHDVNIQDFLGTSTQTVEDLTNQ 120

Query: 121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLE 180
             +LQ QL+E+ +RL  W++P  I +++HL  ME S++ES+N+I  HKEN GKQQLMSLE
Sbjct: 121 RNLLQRQLSEMVERLRCWTDPEKINNVDHLNAMEQSIKESLNRIHTHKENLGKQQLMSLE 180

Query: 181 FAG-QSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISSYS 239
            A  Q+GM +PL M   Q+ QSLSW+PN+D+QH+++  D S LPQRD+ CS D  + +YS
Sbjct: 181 CAQFQNGMQIPLGMGGEQQPQSLSWIPNHDSQHLMLSEDTSLLPQRDIECSTDPSLQNYS 240

Query: 240 GFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDDKK 299
            +LG GK++E+ NSGQ    +  G +L + S NAC+SLQ+G Q+ Y PY   +L  ++ K
Sbjct: 241 SYLGMGKQVEIDNSGQ----DGIGSSLPDFSANACLSLQIGGQFPYQPY-DFDL-VNNNK 294

Query: 300 LKPDAEMNLQGNPAVYQVNSNFELSGP---MYGNGHHDWVSASGPCGIAMFD 348
            K D+EM+LQ     YQV  N    GP    Y      W S SG C + MFD
Sbjct: 295 YKNDSEMSLQEPRLDYQV-GNINSFGPPRHRYDASDQAWASTSGQCSVPMFD 345

Source: Eschscholzia californica

Species: Eschscholzia californica

Genus: Eschscholzia

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518223|ref|XP_004166142.1| PREDICTED: LOW QUALITY PROTEIN: MADS-box transcription factor 55-like [Cucumis sativus]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/362 (56%), Positives = 254/362 (70%), Gaps = 9/362 (2%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGRVKLKIK+LEST +RQVTYSKRRNGI+KKAREL+ILCDIDIVLLMFSP+G+  L+ G+
Sbjct: 1   MGRVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALYEGE 60

Query: 61  RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQT-VEELTH 119
           RSNIEEVI +FA+LTPQERAKRK+ESLE LKKTFKKLDHDVNI DF+G+   +  +ELT+
Sbjct: 61  RSNIEEVITKFAELTPQERAKRKMESLEVLKKTFKKLDHDVNIDDFVGSRYXSFFQELTN 120

Query: 120 QVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSL 179
           +  +L+ Q+ E H+RLSYW NP +I +++ L+QME+ LRES+NQ  LHKEN  + QL+S 
Sbjct: 121 EASLLRDQIGETHKRLSYWRNPDSINNVDQLQQMEDLLRESLNQTRLHKENLRRHQLLSQ 180

Query: 180 EFAGQ---SGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHIS 236
           +F GQ   +GM LPL+M  MQ  Q L WL N   Q + +PN+PSFL   D+ CS      
Sbjct: 181 DFTGQYSCAGMSLPLLMEEMQGTQPLLWLANYGTQQIPLPNEPSFLQPGDVECS----FP 236

Query: 237 SYSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSD 296
           SY  F   GK+IE G SGQV++M  G G LNELS  +C +LQL +QY YP     N   D
Sbjct: 237 SYPSFFNPGKQIEAGISGQVDSMPQGDGALNELSGTSCSTLQLSDQYPYPTCDGSNF-QD 295

Query: 297 DKKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQGS 356
           +K+LK + EMNL       Q+N   ELS  +Y +  H W S  GPC I M+  N YH   
Sbjct: 296 EKRLKMEMEMNLHAACVDTQLNDRLELSRSLYDDNQHPWASIPGPCSIPMYQSNEYHHVG 355

Query: 357 AL 358
           +L
Sbjct: 356 SL 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343160577|emb|CAY39417.1| MADS1 protein [Aristolochia fimbriata] gi|343160579|emb|CAY39418.1| MADS1 protein [Aristolochia fimbriata]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/357 (58%), Positives = 262/357 (73%), Gaps = 14/357 (3%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           MGRVKLKIK+LES++NR VTYSKR+ GI+KKA+ELSILCDIDI LLMFSP G+ +L  G+
Sbjct: 1   MGRVKLKIKKLESSNNRCVTYSKRKTGIMKKAKELSILCDIDIALLMFSPNGKPSLCLGE 60

Query: 61  RS--NIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELT 118
           RS  NIE+VI+RFAQLTPQERAKRKLESLE LKKTFKKLDHDVN+QDFLG  TQTVEELT
Sbjct: 61  RSSSNIEDVISRFAQLTPQERAKRKLESLETLKKTFKKLDHDVNVQDFLGTGTQTVEELT 120

Query: 119 HQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMS 178
           +Q R+LQAQ+ E+H++LSY+SNP  I +++ +R ME +LR+SIN++  HK NF KQQLMS
Sbjct: 121 NQSRLLQAQVAEMHKKLSYYSNPEKINNLDQIRLMEETLRDSINRVQTHKVNFEKQQLMS 180

Query: 179 LEFAG-QSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAHISS 237
           LE    Q+GMHLPL M   Q+ Q+LSWL NND + +L+  +P+ +  RD+ CS  A + S
Sbjct: 181 LECGQFQNGMHLPLAMGGEQQAQTLSWLANNDGRAILMTENPNLVSHRDIECSSSAPVPS 240

Query: 238 YSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQYSYPPYSSLNLPSDD 297
           +S +   GK  E+  SGQ       GG LNEL+ N C+ LQLG Q+ Y PY +LNL  D+
Sbjct: 241 FSSYFNNGK-TEMDTSGQ------EGGTLNELNPNECLRLQLGGQFPYEPY-NLNL-IDE 291

Query: 298 KKLKPDAEMNLQGNPAVYQVNSNFELSGPMYGNGHHDWVSASGPCGIAMFDENSYHQ 354
           KK KP+ +M L      Y V S FE S P Y   HH W S SG CG+ MF+E+++ Q
Sbjct: 292 KKFKPEGDM-LHEQSVDYHV-SGFEQSRPEYDANHHSWASTSGHCGVPMFEEHTFQQ 346

Source: Aristolochia fimbriata

Species: Aristolochia fimbriata

Genus: Aristolochia

Family: Aristolochiaceae

Order: Piperales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2034949	389	AGL65 "AGAMOUS-like 65" [Arabi	0.812	0.758	0.573	1.2e-81
TAIR|locus:2056760	386	AGL30 "AGAMOUS-like 30" [Arabi	0.688	0.647	0.537	3.7e-74
TAIR|locus:2007186	344	AGL94 "AGAMOUS-like 94" [Arabi	0.906	0.956	0.413	1.7e-59
TAIR|locus:2029386	332	AGL66 "AGAMOUS-like 66" [Arabi	0.493	0.539	0.430	4.3e-32
TAIR|locus:2030621	335	AGL104 "AGAMOUS-like 104" [Ara	0.570	0.617	0.386	6.2e-30
TAIR|locus:2029411	252	AGL67 "AGAMOUS-like 67" [Arabi	0.586	0.845	0.344	4e-26
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.608	0.827	0.3	1.4e-18
UNIPROTKB|Q40882	228	fbp11 "Fbp11 protein" [Petunia	0.553	0.881	0.318	9.5e-18
UNIPROTKB|Q9ZS29	246	GAGA2 "MADS-box protein, GAGA2	0.506	0.747	0.338	1.2e-17
TAIR|locus:2184118	196	FLC "FLOWERING LOCUS C" [Arabi	0.504	0.933	0.312	1.6e-17

TAIR|locus:2034949 AGL65 "AGAMOUS-like 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 184/321 (57%), Positives = 225/321 (70%)

Query:     1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
             MGRVKLKIKRLESTSNRQVTY+KR+NGILKKA+ELSILCDIDIVLLMFSPTGR+T FHG+
Sbjct:     1 MGRVKLKIKRLESTSNRQVTYTKRKNGILKKAKELSILCDIDIVLLMFSPTGRATAFHGE 60

Query:    61 RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
              S IEEVI++FAQLTPQER KRKLESLEALKKTFKKLDHDVNI DFLGA  QT+E L++Q
Sbjct:    61 HSCIEEVISKFAQLTPQERTKRKLESLEALKKTFKKLDHDVNIHDFLGARNQTIEGLSNQ 120

Query:   121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLE 180
             V I QAQL E H+RLS W+N   IE+ EHL  +E SLR+SI +I +HKE++ K QL+ +E
Sbjct:   121 VAIYQAQLMECHRRLSCWTNIDRIENTEHLDLLEESLRKSIERIQIHKEHYRKNQLLPIE 180

Query:   181 FAG---QSGMHLPLMM---NVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGCSEDAH 234
              A     SG+ LP+ M   + MQE  S+SWLP+ND+Q  ++P D SFLP R+M    D  
Sbjct:   181 CATTQFHSGIQLPMAMGGNSSMQEAHSMSWLPDNDHQQTILPGDSSFLPHREM----DGS 236

Query:   235 ISSYSG-FLGAGK-EIEV-GNSGQ-VENMEHGGGNLNELSNNACISLQ-LGEQXXXXXXX 289
             I  YS  F  + K E ++  N GQ  E +E  G        N C+ LQ LGE+       
Sbjct:   237 IPVYSSCFFESTKPEDQICSNPGQQFEQLEQQG--------NGCLGLQQLGEEYSYPTPF 288

Query:   290 XXXXXXDD---KKLKPDAEMN 307
                   ++   KK+K + E+N
Sbjct:   289 GTTLGMEEDQEKKIKSEMELN 309

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009555 "pollen development" evidence=IGI

TAIR|locus:2056760 AGL30 "AGAMOUS-like 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 143/266 (53%), Positives = 197/266 (74%)

Query:     1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
             MGRVKLKIK+LE+T+ RQ T++KR+NGILKKA ELSILCDIDIVLLMFSPTG++ +  G 
Sbjct:     1 MGRVKLKIKKLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAAICCGT 60

Query:    61 RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQ 120
             RS++EEVIA+F+Q+TPQER KRK ESLE LKKTF+KLDHDVNI++F+ +S  TVE+L+ Q
Sbjct:    61 RSSMEEVIAKFSQVTPQERTKRKFESLENLKKTFQKLDHDVNIREFIASSNSTVEDLSTQ 120

Query:   121 VRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQ-LMSL 179
              RILQA+++E+H RLSYW+ P  I ++EHL Q+E S+R+S++Q+  HKE+FG+QQ  M +
Sbjct:   121 ARILQARISEIHGRLSYWTEPDKINNVEHLGQLEISIRQSLDQLRAHKEHFGQQQQAMQI 180

Query:   180 EFAG----------QSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLPQRDMGC 229
             E A           Q G+ +PL     Q+ QS+SW+ N++  + +V  + + +PQR++ C
Sbjct:   181 ENANFVKDWSTCSMQDGIQIPLE----QQLQSMSWILNSNTTN-IVTEEHNSIPQREVEC 235

Query:   230 SEDAHISSYSGFLGAGKEIEVGNSGQ 255
             S  +   SY G+ G GK  E+   GQ
Sbjct:   236 SASSSFGSYPGYFGTGKSPEMTIPGQ 261

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009555 "pollen development" evidence=IGI

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2007186 AGL94 "AGAMOUS-like 94" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 150/363 (41%), Positives = 224/363 (61%)

Query:     1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
             MGRVKLKIK+L++ + RQ TY+KRR+GI+KKA+ELSILCDID+VLLMFSP G++++  G+
Sbjct:     1 MGRVKLKIKKLQNMNGRQCTYTKRRHGIMKKAKELSILCDIDVVLLMFSPMGKASICIGK 60

Query:    61 RSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGA-STQTVEELTH 119
              S I EVIA+FAQL+PQERAKRKLE+LEAL+KTF K +HD++I  FL   ST TVE L+ 
Sbjct:    61 HS-IGEVIAKFAQLSPQERAKRKLENLEALRKTFMKANHDIDISKFLDRISTPTVEVLSE 119

Query:   120 QVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGK---QQL 176
             ++R LQ QL+++H RLSYW++  NI+S++ L+Q+E+SLR+S+ QI   K +  +   QQL
Sbjct:   120 KIRFLQTQLSDIHTRLSYWTDVDNIDSVDVLQQLEHSLRQSLAQIYGRKASMPQRQQQQL 179

Query:   177 MSLEFAGQ--SGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPN-DPSFLPQ---RDMGCS 230
             MS +   Q  + + +   M + Q+ ++ SW+  ++N ++ +   DP+       +D+ CS
Sbjct:   180 MSSQCKNQLQTEIDIDFGMEMEQQLENFSWVRTDENMNVPIEEEDPNLQLHHMYKDITCS 239

Query:   231 EDAHISSYSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISLQLGEQXXXXXXXX 290
               + + +YSG      +I       ++ +E G             S+  G          
Sbjct:   240 ASSALGNYSGLFSKSSDI-------LQKLETG-------------SIP-GTSADPNQQFS 278

Query:   291 XXXXXDDKKLKPDAEMNLQGNPAVYQVNSNFELS-GPMYGNGHHDWVSASGPCGIAMFDE 349
                  +D+KLK  AE NL G+PA Y V+   E S  P  G  ++   S + P  +A+FD+
Sbjct:   279 NLSFLNDQKLKQLAEWNLLGSPADYYVSQILEASYKPQIGGKNNGASSETLPY-VAVFDD 337

Query:   350 NSY 352
               Y
Sbjct:   338 PLY 340

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2029386 AGL66 "AGAMOUS-like 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 84/195 (43%), Positives = 121/195 (62%)

Query:     1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
             MGRVKL+IKR+E+T+NRQVT+SKRRNG++KKA ELSILCDIDI LLMFSP+ R +LF G 
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFSG- 59

Query:    61 RSNIEEVIARFAQLTPQER---------AKRK-LESLEALKKTFKKL--DHDVNIQ-DFL 107
             ++ IE+V +R+  L+ QER         ++R   +S E L +T ++L  ++D+ +Q    
Sbjct:    60 KTRIEDVFSRYINLSDQERENALVFPDQSRRPDFQSKEYLLRTLQQLKAENDIALQLTNP 119

Query:   108 GASTQTVEELTHQVRILQAQLTEVHQRL-SYWSNPGNIESIEHLRQMENSLRESINQICL 166
              A    VEEL H+V  LQ QL    + L  Y  +P    ++E     E  L +++ ++  
Sbjct:   120 TAINSDVEELEHEVYKLQQQLLMAEEELRKYEPDPIRFTTMEEYETCEKQLMDTLTRVNQ 179

Query:   167 HKENFGKQ-QLMSLE 180
              +E+   Q QL S E
Sbjct:   180 RREHILSQDQLSSYE 194

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2030621 AGL104 "AGAMOUS-like 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 89/230 (38%), Positives = 135/230 (58%)

Query:     1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
             MGRVKL+IKR+E+T+NRQVT+SKRRNG++KKA ELSILCDIDI L+MFSP+ R +LF G 
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFSG- 59

Query:    61 RSNIEEVIARFAQLTPQERAK--------RK--LESLEALKKTFKKL--DHDVNIQDFLG 108
             ++ IE+V +RF  L  QER          R+  +++ E L +  ++L  ++D+ +Q    
Sbjct:    60 KTRIEDVFSRFINLPKQERESALYFPDQNRRPDIQNKECLLRILQQLKTENDIALQVTNP 119

Query:   109 ASTQT-VEELTHQVRILQAQLTEVHQRLS-YWSNPGNIESIEHLRQMENSLRESINQICL 166
             A+  + VEEL H+V  LQ QL    + L  Y  +P    ++E     E  L +++  +  
Sbjct:   120 AAINSDVEELEHEVCRLQQQLQMAEEELRRYEPDPIRFTTMEEYEVSEKQLLDTLTHVVQ 179

Query:   167 HKENFGKQQLMSLEFAG-QSGMHLPLMMNVMQENQSLSWLPNND-NQ-HM 213
              +++     L S E +  Q  +  P + +V++      WLP N  NQ H+
Sbjct:   180 RRDHLMSNHLSSYEASTMQPNIGGPFVNDVVE-----GWLPENGTNQTHL 224

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009555 "pollen development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2029411 AGL67 "AGAMOUS-like 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 84/244 (34%), Positives = 139/244 (56%)

Query:     1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
             MGRVKL++KR+E ++NRQ+T+SKR+ G++KKA ELS LCDID+ LLMFSP+ R  LF GQ
Sbjct:     1 MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFSGQ 60

Query:    61 RSNIEEVIARFAQLTPQER---------AKRK-LESLEALKKTFKKL--DHDVNIQ---D 105
              + IE+V+AR+  L  QER         +KR+ +++ E L +T +KL  + D+ +Q    
Sbjct:    61 -TRIEDVLARYINLPDQERENAIVFPDQSKRQGIQNKEYLLRTLEKLKIEDDMALQINEP 119

Query:   106 FLGASTQTVEELTHQVRILQAQLTEVHQRL-SYWSNPGNIESIEHLRQMENSLRESINQI 164
                A+   VEEL  +V  LQ QL    + L  +  +P  + S+E +   E +L  ++ ++
Sbjct:   120 RPEATNSNVEELEQEVCRLQQQLQISEEELRKFEPDPMRLTSMEEIEACEANLINTLTRV 179

Query:   165 CLHKENFGKQQLMSLEFAGQSGMHLPLMMNVMQENQSLSWLPNNDNQ--HMLV-----PN 217
                +E+  ++   +   + Q  M   L+ +++++     W P  + +  HM+       N
Sbjct:   180 VQRREHLLRKSCEAQ--SNQQSMDGILLNDIVED-----WGPEPEPKQAHMIANSAHHSN 232

Query:   218 DPSF 221
              PS+
Sbjct:   233 QPSY 236

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 225 (84.3 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 75/250 (30%), Positives = 129/250 (51%)

Query:     1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLF-HG 59
             MGR K+++KR+E+  NRQVT+SKRRNG+LKKA E+S+LCD ++  ++FSP G+  L+ + 
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGK--LYEYA 58

Query:    60 QRSNIEEVIARFAQLTPQERAKRKLES------------LEALKKTFKKLDHDVNIQDFL 107
               S +++++ R+ + +  E+A    ES            L+A  +T +K    +  +D  
Sbjct:    59 TDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLE 118

Query:   108 GASTQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLH 167
               + + +++L  Q   L++ L  +  R S+      +ESI  L++ E SL+E  N+  L 
Sbjct:   119 SLNLKELQQLEQQ---LESSLKHIISRKSHLM----LESISELQKKERSLQEE-NK-ALQ 169

Query:   168 KENFGKQQ-LMSLEFAGQ---SGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFLP 223
             KE   +Q+ +   +  GQ   + +          +  S S     D Q +L P +  + P
Sbjct:   170 KELVERQKNVRGQQQVGQWDQTQVQAQAQAQPQAQTSSSSSSMLRDQQALLPPQNICYPP 229

Query:   224 QRDMGCSEDA 233
                MG   DA
Sbjct:   230 VM-MGERNDA 238

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40882 fbp11 "Fbp11 protein" [Petunia x hybrida (taxid:4102)]

 Score = 218 (81.8 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 71/223 (31%), Positives = 109/223 (48%)

Query:     1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
             MGR K++IKR+E+ +NRQVT+ KRRNG+LKKA ELS+LCD +I L++FS  GR  ++   
Sbjct:     1 MGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGR--VYEYA 58

Query:    61 RSNIEEVIARFAQLTPQERAKRKLESLEA--LKKTFKKLDHDV----NIQDFL---GAST 111
              +NI+  I R+ + T +       + L A   ++  KKL   +    N    L   G S 
Sbjct:    59 NNNIKGTIERYKKATAETSNACTTQELNAQFYQQESKKLRQQIQLLQNTNRHLVGEGLSA 118

Query:   112 QTVEELTHQVRILQAQLTEVHQRLSYW--SNPGNIESIEHLRQMENS-LRESINQICLHK 168
               V EL      L+  +T +  +      +   N++  E   + EN+ LR  I       
Sbjct:   119 LNVRELKQLENRLERGITRIRSKKHEMILAETENLQKREIQLEQENTFLRSKI------A 172

Query:   169 ENFGKQQLMSLEFAGQ--SGMHLPLMMNVMQENQSLSWLPNND 209
             EN   Q+L  +   GQ  +        N++Q N     +P+ D
Sbjct:   173 ENERLQELSMMPATGQEYNAFQQYFARNMLQLNMMEGGVPSYD 215

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS29 GAGA2 "MADS-box protein, GAGA2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 217 (81.4 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 68/201 (33%), Positives = 108/201 (53%)

Query:     1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
             +GR K++IKR+E+T+NRQVT+ KRRNG+LKKA ELS+LCD ++ L++FS  GR  L+   
Sbjct:    16 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR--LYEYA 73

Query:    61 RSNIEEVIARF--AQLTPQE-----RAKRKLESLEA--LKKTFKKLDHDVNIQDFLGAST 111
              ++++  I R+  A L P        A  +    EA  L++    L +  N Q +     
Sbjct:    74 NNSVKGTIDRYKKACLDPPSSGSVAEANAQFYQQEAAKLRQQIANLQNQ-NRQFYRNIMG 132

Query:   112 QTVEEL-THQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHK-- 168
             +++  +    ++ L+++L +   ++    N      IE++++ EN L  S NQ    K  
Sbjct:   133 ESLGNMPAKDLKNLESKLEKGIGKIRSKKNEILFAEIEYMQKRENELHNS-NQFLRSKIA 191

Query:   169 ENFGKQQLMSLEFAGQSGMHL 189
             EN   QQ MSL   G S   L
Sbjct:   192 ENERAQQHMSL-MPGSSDYEL 211

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2184118 FLC "FLOWERING LOCUS C" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 65/208 (31%), Positives = 110/208 (52%)

Query:     1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
             MGR KL+IKR+E+ S+RQVT+SKRRNG+++KAR+LS+LCD  + LL+ S +G+   F   
Sbjct:     1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSF-SS 59

Query:    61 RSNIEEVIARFAQ--------LTPQERAKRKLESLEALKKTFKKLDHDVNIQDF-LGAST 111
               N+ +++ R+ +        L  Q +A       E L+    KL    N+++  + A  
Sbjct:    60 GDNLVKILDRYGKQHADDLKALDHQSKALNYGSHYELLELVDSKLVGS-NVKNVSIDALV 118

Query:   112 QTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKEN- 170
             Q  E L   + + +A+ TE+  +L           +E+L++ E  L+E    +    EN 
Sbjct:   119 QLEEHLETALSVTRAKKTELMLKL-----------VENLKEKEKMLKEENQVLASQMENN 167

Query:   171 --FGKQQLMSLEFAGQSGMHLPLMMNVM 196
                G +  M +  AGQ   +LP+ + ++
Sbjct:   168 HHVGAEAEMEMSPAGQISDNLPVTLPLL 195

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010048 "vernalization response" evidence=IEP;RCA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VIII0760 hypothetical protein (363 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	6e-28
smart00432	59	smart00432, MADS, MADS domain	1e-27
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	1e-26
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	7e-26
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	7e-19
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	5e-04

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  104 bits (261), Expect = 6e-28
 Identities = 36/74 (48%), Positives = 59/74 (79%), Gaps = 2/74 (2%)

Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
          GR K++IKR+E+++NRQVT+SKRRNG+LKKA ELS+LCD ++ L++FS +G+  L+    
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGK--LYEFSS 58

Query: 62 SNIEEVIARFAQLT 75
           ++E++I R+ + +
Sbjct: 59 PSMEKIIERYQKTS 72

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  103 bits (258), Expect = 1e-27
 Identities = 34/56 (60%), Positives = 47/56 (83%)

Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLF 57
          GR K++IKR+E+ +NRQVT+SKRRNG+ KKA ELS+LCD ++ L++FSPTG+   F
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEF 56

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  100 bits (252), Expect = 1e-26
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 1/81 (1%)

Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
          GR K+KIKR+E+   R VT+SKRR G+ KKA ELS LC  ++ ++++SP+G+  +F    
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVF-WPS 59

Query: 62 SNIEEVIARFAQLTPQERAKR 82
          S +E VI+RF  L+  ER K+
Sbjct: 60 SEVEGVISRFEVLSALERKKK 80

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 98.0 bits (245), Expect = 7e-26
 Identities = 31/56 (55%), Positives = 47/56 (83%)

Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLF 57
          GR K++IKR+E+ ++RQVT+SKRRNG+ KKA ELS+LCD ++ +++FSP+G+   F
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEF 56

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 79.0 bits (195), Expect = 7e-19
 Identities = 29/45 (64%), Positives = 39/45 (86%)

Query: 9  KRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGR 53
          KR+E+ SNRQVT+SKRRNGI KKA ELS+LCD ++ +++FS TG+
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGK 45

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 1   MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLF 57
           +   K+ I  + + + R VT+SKR++GI KKA ELS+L   +++LL+ S  G    F
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTF 137

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.96
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.94
smart00432	59	MADS MADS domain.	99.93
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.92
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.88
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.73
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.34
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.31
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	88.22
PRK04098	158	sec-independent translocase; Provisional	82.39
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	81.25

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=4.5e-35  Score=266.38  Aligned_cols=171  Identities=29%  Similarity=0.462  Sum_probs=121.0

Q ss_pred             CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCHHHHH
Q 017948            1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERA   80 (363)
Q Consensus         1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~er~   80 (363)
                      |||+||+|+||||.++|||||+|||+||||||+|||||||||||||||||+||+|+||+++.+|.+|++||...+..++.
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999987444499999999998876655


Q ss_pred             HHhHHHHHHHHHH-HhhhhhchhhHHHhccchhhHHHHHHHHHHHHHHHHHHH---HhhhcCCCCC-CCCCH-HHHHHHH
Q 017948           81 KRKLESLEALKKT-FKKLDHDVNIQDFLGASTQTVEELTHQVRILQAQLTEVH---QRLSYWSNPG-NIESI-EHLRQME  154 (363)
Q Consensus        81 k~~~e~~e~L~k~-~kKL~~d~~i~~~l~~~s~~vE~L~~Ei~kLk~qle~lq---~rlr~~~g~d-~~LSl-kELq~LE  154 (363)
                      +........+... +.++..+......      ....+..+...++...+.+.   ...+.+.+++ ..++. .+|..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~  154 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEEL------KLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLE  154 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhc------cchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchh
Confidence            4432222222111 1111100000000      00112223333443333333   2345566666 66777 9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHh
Q 017948          155 NSLRESINQICLHKENFGKQQLM  177 (363)
Q Consensus       155 ~qLe~sL~~IR~RK~qL~~eql~  177 (363)
                      .+|+.++..+|.++...+.+++.
T Consensus       155 ~~l~~~~~~~~~~~~~~~~~~~~  177 (195)
T KOG0014|consen  155 SQLESSLHNSRSSKSKPLSDSNF  177 (195)
T ss_pred             hHHHHhhcCCCCCCCcCCcchhh
Confidence            99999999999999887777664

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=1.6e-30  Score=204.45  Aligned_cols=73  Identities=49%  Similarity=0.889  Sum_probs=70.5

Q ss_pred             CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCH
Q 017948            2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTP   76 (363)
Q Consensus         2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~   76 (363)
                      ||+||+|++|||+..|+|||+|||.||||||+||||||||+||||||||+|+++.|++  +++++||+||.+.+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s--~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS--PSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC--CCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999987  789999999998764

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.94  E-value=1.9e-28  Score=195.25  Aligned_cols=79  Identities=48%  Similarity=0.833  Sum_probs=73.0

Q ss_pred             CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCHHHHHH
Q 017948            2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAK   81 (363)
Q Consensus         2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~er~k   81 (363)
                      ||+||+|++|+|..+|+|||+|||.||+|||+||||||||+||||||||+|+++.|+++ +++..||+||...+..++.+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~   79 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPS-SEVEGVISRFEVLSALERKK   79 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCc-HHHHHHHHHHhhcCHhhhhc
Confidence            89999999999999999999999999999999999999999999999999999999873 23999999999988765543

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.93  E-value=4.5e-27  Score=175.34  Aligned_cols=58  Identities=59%  Similarity=0.999  Sum_probs=56.9

Q ss_pred             CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccC
Q 017948            2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHG   59 (363)
Q Consensus         2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s   59 (363)
                      ||+||+|++|+|...|++||+|||.||+|||+||||||||+||||||||+|+++.|++
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS   58 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence            8999999999999999999999999999999999999999999999999999999985

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.92  E-value=1.6e-26  Score=172.37  Aligned_cols=58  Identities=53%  Similarity=0.952  Sum_probs=56.9

Q ss_pred             CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccC
Q 017948            2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHG   59 (363)
Q Consensus         2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s   59 (363)
                      ||+||+|++|+|...|+|||+|||.||+|||+||||||||+||||||||+|+++.|++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999985

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.88  E-value=4.7e-25  Score=159.55  Aligned_cols=51  Identities=51%  Similarity=0.914  Sum_probs=46.7

Q ss_pred             EEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccC
Q 017948            9 KRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHG   59 (363)
Q Consensus         9 krIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s   59 (363)
                      |+|||...|++||+|||.||+|||.|||+||||+||||||||+|+++.|++
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999974

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.73  E-value=4.9e-19  Score=167.48  Aligned_cols=66  Identities=44%  Similarity=0.657  Sum_probs=62.4

Q ss_pred             CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHH
Q 017948            2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIA   69 (363)
Q Consensus         2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILe   69 (363)
                      ||+||+|++|||+..|.|||||||.||||||+|||||+|.+|-|+|-|.+|-+|.|++  +-++.||.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaT--pKLep~i~  128 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--PKLEPMIT  128 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecc--cccccccc
Confidence            7999999999999999999999999999999999999999999999999999999997  66666664

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.34  E-value=2.3e-13  Score=134.49  Aligned_cols=65  Identities=37%  Similarity=0.558  Sum_probs=60.9

Q ss_pred             CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHH
Q 017948            1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEV   67 (363)
Q Consensus         1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~I   67 (363)
                      |||+||.|..|+|+..|.|||+||+.||+|||+||+||.+.+|+|+|.|.+|+++.|+.  +..+.|
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~t--p~~e~v  145 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT--PKLESV  145 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecC--Cccccc
Confidence            79999999999999999999999999999999999999999999999999999999987  544444

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.31  E-value=5.1e-12  Score=104.04  Aligned_cols=81  Identities=17%  Similarity=0.239  Sum_probs=73.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcc--cCCC
Q 017948          112 QTVEELTHQVRILQAQLTEVHQRLSYWSNPG-NIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLEFAGQ--SGMH  188 (363)
Q Consensus       112 ~~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d-~~LSlkELq~LE~qLe~sL~~IR~RK~qL~~eql~~Lq~keq--~~~n  188 (363)
                      ...+.+..++.+|+.+++.++..+|++.|++ +.||++||..||++|+.+|++||+||.+++.++|..|++|+.  .+.|
T Consensus        12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en   91 (100)
T PF01486_consen   12 SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEEN   91 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999 899999999999999999999999999999999999999976  4555


Q ss_pred             chhh
Q 017948          189 LPLM  192 (363)
Q Consensus       189 ~~l~  192 (363)
                      ..|+
T Consensus        92 ~~L~   95 (100)
T PF01486_consen   92 NQLR   95 (100)
T ss_pred             HHHH
Confidence            5443

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=88.22  E-value=4.7  Score=35.93  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=51.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017948          110 STQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKE  169 (363)
Q Consensus       110 ~s~~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~  169 (363)
                      ...+.++|...+..|+.+++.++.++..+.+.....|.+|...+++......+..+.||.
T Consensus       107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKr  166 (169)
T PF07106_consen  107 SEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKR  166 (169)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678889999999999999999888776655668999999999999999999999984

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK04098 sec-independent translocase; Provisional

Probab=82.39  E-value=3.6  Score=36.77  Aligned_cols=82  Identities=10%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             ceeecccCCCCCCccccCCCCchHHHHHHHhccCHHHHHHHhHHHHHHHHHHHhhhhhchhhHHHhccchhhHHHHHHHH
Q 017948           42 DIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQV  121 (363)
Q Consensus        42 eVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~er~k~~~e~~e~L~k~~kKL~~d~~i~~~l~~~s~~vE~L~~Ei  121 (363)
                      =||||||.| .||....   ..+-+.+.+|++.....+.        .+.       .+.           .+.+|+.+.
T Consensus        14 vVaLlvfGP-~KLP~~~---r~lGk~ir~~K~~~~~~k~--------~l~-------~Ei-----------~~~elk~e~   63 (158)
T PRK04098         14 VVAIIFLGP-DKLPQAM---VDIAKFFKAVKKTINDAKS--------TLD-------KEI-----------NIEEIKEEA   63 (158)
T ss_pred             HHHHhhcCc-hHHHHHH---HHHHHHHHHHHHHHHHHHH--------HHH-------HHH-----------hhHHHHHHH
Confidence            379999998 5877765   4677777777664332111        111       111           245667777


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 017948          122 RILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRE  159 (363)
Q Consensus       122 ~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~  159 (363)
                      .+.+..++.....+|-      .+++++|..+-.-+..
T Consensus        64 ~k~k~~l~~~~~~l~~------~~~~eel~~~~~~~~~   95 (158)
T PRK04098         64 LKYKKEFESAVESLKK------KLKFEELDDLKITAEN   95 (158)
T ss_pred             HHHHHHHHHHHHHHHh------ccChHHHHHHhhhhhh
Confidence            7777777776666652      2677777766433333

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=81.25  E-value=0.58  Score=28.46  Aligned_cols=14  Identities=43%  Similarity=0.619  Sum_probs=11.5

Q ss_pred             ceeecccCCCCCCc
Q 017948           42 DIVLLMFSPTGRST   55 (363)
Q Consensus        42 eVALIIFSp~GKl~   55 (363)
                      |-.+.+|||.||++
T Consensus         2 D~~~t~FSp~Grl~   15 (23)
T PF10584_consen    2 DRSITTFSPDGRLF   15 (23)
T ss_dssp             SSSTTSBBTTSSBH
T ss_pred             CCCceeECCCCeEE
Confidence            34678999999997

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	363
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		3e-13
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-12
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		1e-11
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		9e-11
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		2e-10
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		5e-09
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		9e-07
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		1e-06
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		1e-06

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Query: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
          MGR K++I R+    NRQVT++KR+ G++KKA ELS+LCD +I L++F+   R  LF   
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANR--LFQYA 58
Query: 61 RSNIEEVIARFAQLTPQERAKRKLESLEALKK 92
           ++++ V+ ++ + +    ++   + LE LK+
Sbjct: 59 STDMDRVLLKYTEYSEPHESRTNTDILETLKR 90

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
          GR K++I R+    NRQVT++KR+ G++KKA ELS+LCD +I L++F+   R  LF    
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANR--LFQYAS 58
Query: 62 SNIEEVIARFAQLTPQERAKRKLESLEALKK 92
          ++++ V+ ++ + +    ++   + LE LK+
Sbjct: 59 TDMDRVLLKYTEYSEPHESRTNTDILETLKR 89

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
          GR K++I R+    NRQVT++KR+ G++KKA ELS+LCD +I L++F+ + +  LF    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK--LFQYAS 58
Query: 62 SNIEEVIARFAQLTPQERAKRKLESLEALKK 92
          +++++V+ ++ +      ++   + +EAL K
Sbjct: 59 TDMDKVLLKYTEYNEPHESRTNSDIVEALNK 89

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
          GR K++I R+    NRQVT++KR+ G++KKA ELS+LCD +I L++F+ + +  LF    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK--LFQYAS 58
Query: 62 SNIEEVIARF 71
          +++++V+ ++
Sbjct: 59 TDMDKVLLKY 68

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
          GR K++I R+    NRQVT++KR+ G++KKA ELS+LCD +I L++F+ + +  LF    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK--LFQYAS 58
Query: 62 SNIEEVIARFAQLT-PQE 78
          +++++V+ ++ +   P E
Sbjct: 59 TDMDKVLLKYTEYNEPHE 76

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
          GR K++I R+    NRQVT++KR+ G++KKA ELS+L D +I L++F+ + +  LF    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNK--LFQYAS 58
Query: 62 SNIEEVIARFAQLTPQERAKRKLESLE 88
          +++++V+ ++ +      ++   + +E
Sbjct: 59 TDMDKVLLKYTEYNEPHESRTNSDIVE 85

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 3  RVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTG 52
          R K++IK +E+ + R VT+SKR++GI+KKA ELS+L    ++LL+ S TG
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETG 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLF 57
          GRVK+K++ +++   R  T+SKR+ GI+KKA ELS L    ++LL+ S TG    F
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLF 57
          GRVK+K++ +++   R  T+SKR+ GI+KKA ELS L    ++LL+ S TG    F
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	5e-30
1hbx_A	92	SRF, serum response factor; gene regulation, trans	4e-28
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	4e-27
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	5e-27
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  109 bits (274), Expect = 5e-30
 Identities = 32/91 (35%), Positives = 60/91 (65%), Gaps = 2/91 (2%)

Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
          GR K++I R+    NRQVT++KR+ G++KKA ELS+LCD +I L++F+ + +  LF    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK--LFQYAS 58

Query: 62 SNIEEVIARFAQLTPQERAKRKLESLEALKK 92
          +++++V+ ++ +      ++   + +EAL K
Sbjct: 59 TDMDKVLLKYTEYNEPHESRTNSDIVEALNK 89

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  104 bits (261), Expect = 4e-28
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           GRVK+K++ +++   R  T+SKR+ GI+KKA ELS L    ++LL+ S TG   ++   
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH--VYTFA 67

Query: 61 RSNIEEVIARFAQLTPQERA 80
             ++ +I         +  
Sbjct: 68 TRKLQPMITSETGKALIQTC 87

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  102 bits (255), Expect = 4e-27
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
            R K++IK +E+ + R VT+SKR++GI+KKA ELS+L    ++LL+ S TG   ++   
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGL--VYTFS 73

Query: 61 RSNIEEVIARFAQLTPQER 79
              E ++ +       + 
Sbjct: 74 TPKFEPIVTQQEGRNLIQA 92

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  101 bits (254), Expect = 5e-27
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           GRVK+K++ +++   R  T+SKR+ GI+KKA ELS L    ++LL+ S TG   ++   
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH--VYTFA 66

Query: 61 RSNIEEVIARFAQLTPQERA 80
             ++ +I         +  
Sbjct: 67 TRKLQPMITSETGKALIQTC 86

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  100 bits (250), Expect = 1e-26
 Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
          GR K++I R+    NRQVT++KR+ G++KKA ELS+LCD +I L++F+ + +  LF    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK--LFQYAS 58

Query: 62 SNIEEVIARFAQLTPQERA 80
          +++++V+ ++ +      +
Sbjct: 59 TDMDKVLLKYTEYNEPHES 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 9e-09
 Identities = 40/275 (14%), Positives = 80/275 (29%), Gaps = 62/275 (22%)

Query: 49  SPTGRSTLFHGQRSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFL- 107
            P+  + ++  QR  +      FA+        R  +    L++   +L    N+   + 
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRL-QPYLKLRQALLELRPAKNV--LID 156

Query: 108 --GASTQTVEELTHQVRILQAQLTEVHQRLS---YWSNPGNIESIEHLRQMENSLRESIN 162
               S +T   +   V        +V  ++    +W N  N  S E + +M   L   I+
Sbjct: 157 GVLGSGKTW--VALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 163 QICLHKENFGKQQLMSLEFAGQSGMHLPLMMNVMQENQSLSWLPNNDNQHMLVPNDPSFL 222
                + +      + +         L  ++        L  L    N    V  +    
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQA---ELRRLLKSKPYENCLLVL---LN----V-QNAKAW 259

Query: 223 PQRDMGC-----SEDAHISSYSGFLGAGKEIEVGNSGQVENMEHGGGNLNELSNNACISL 277
              ++ C     +    ++    FL A     +       +++H    L           
Sbjct: 260 NAFNLSCKILLTTRFKQVTD---FLSAATTTHI-------SLDHHSMTLTPDE-----VK 304

Query: 278 QLGEQYSYPPYSSLNLPSDDKKLKPDAEMNLQGNP 312
            L  +Y       L+    D  L  +    L  NP
Sbjct: 305 SLLLKY-------LDCRPQD--LPREV---LTTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.97
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.97
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.97

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=1.3e-36  Score=242.74  Aligned_cols=87  Identities=33%  Similarity=0.682  Sum_probs=77.5

Q ss_pred             CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCHHHHHH
Q 017948            2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAK   81 (363)
Q Consensus         2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~er~k   81 (363)
                      ||+||+|++|||.++|||||+|||+||||||+|||||||||||||||||+||+|+|++  ++|++||+||+++++..+.+
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s--~~~~~il~rY~~~~~~~~~~   78 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEPHESR   78 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHCCSCCCEE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC--CCHHHHHHHHHhcCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999987  89999999999988655444


Q ss_pred             HhHHHHHHH
Q 017948           82 RKLESLEAL   90 (363)
Q Consensus        82 ~~~e~~e~L   90 (363)
                      ...+..+++
T Consensus        79 ~~~d~~e~~   87 (90)
T 3p57_A           79 TNSDIVEAL   87 (90)
T ss_dssp             CHHHHHHHH
T ss_pred             ChHhHHHHH
Confidence            333444443

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=6.5e-36  Score=233.06  Aligned_cols=73  Identities=36%  Similarity=0.741  Sum_probs=69.6

Q ss_pred             CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCH
Q 017948            2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTP   76 (363)
Q Consensus         2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~   76 (363)
                      ||+||+|++|||.++|||||+|||+||||||+|||||||||||||||||+||+|+|++  ++|++||+||.+.++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s--~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC--CCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999999986  789999999998864

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.97  E-value=6.4e-34  Score=231.03  Aligned_cols=73  Identities=37%  Similarity=0.551  Sum_probs=69.9

Q ss_pred             CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccC
Q 017948            1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLT   75 (363)
Q Consensus         1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s   75 (363)
                      |||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+||+|+|++  ++|+.||+||....
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--ps~~~il~r~~G~~   88 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEGRN   88 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC--CCHHHHHHHhhCCc
Confidence            89999999999999999999999999999999999999999999999999999999987  79999999997543

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.97  E-value=1.3e-33  Score=226.28  Aligned_cols=70  Identities=37%  Similarity=0.556  Sum_probs=67.8

Q ss_pred             CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHh
Q 017948            1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFA   72 (363)
Q Consensus         1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~   72 (363)
                      |||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+||+|+|++  ++|+.||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s--~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC--GGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC--CCHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999987  89999999764

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.97  E-value=4.1e-33  Score=227.64  Aligned_cols=70  Identities=37%  Similarity=0.556  Sum_probs=67.5

Q ss_pred             CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHh
Q 017948            1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFA   72 (363)
Q Consensus         1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~   72 (363)
                      |||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+||+|+|++  ++|..||+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--~~~~~vi~~~~   78 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET   78 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC--GGGGGGTSSHH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC--ccHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999987  89999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	363
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	3e-26
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	6e-25
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	1e-24

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (244), Expect = 3e-26
 Identities = 28/72 (38%), Positives = 52/72 (72%), Gaps = 2/72 (2%)

Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
          GR K++I R+    NRQVT++KR+ G++KKA ELS+LCD +I L++F+ + +  LF    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK--LFQYAS 58

Query: 62 SNIEEVIARFAQ 73
          +++++V+ ++ +
Sbjct: 59 TDMDKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (235), Expect = 6e-25
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQ 60
           GRVK+K++ +++   R  T+SKR+ GI+KKA ELS L    ++LL+ S TG   ++   
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH--VYTFA 59

Query: 61 RSNIEEVIARF 71
             ++ +I   
Sbjct: 60 TRKLQPMITSE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.6 bits (233), Expect = 1e-24
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 2  GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQR 61
           R K++IK +E+ + R VT+SKR++GI+KKA ELS+L    ++LL+ S TG   ++    
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGL--VYTFST 60

Query: 62 SNIEEVIARF 71
             E ++ + 
Sbjct: 61 PKFEPIVTQQ 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	99.98
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.97
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.97

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.7e-35  Score=222.73  Aligned_cols=71  Identities=37%  Similarity=0.762  Sum_probs=68.7

Q ss_pred             CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhcc
Q 017948            2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL   74 (363)
Q Consensus         2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~   74 (363)
                      ||+||+|++|||+..|+|||+|||+||||||+||||||||+||||||||+||+++|++  +++++||+||..+
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s--~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeC--CCHHHHHHHHhcC
Confidence            8999999999999999999999999999999999999999999999999999999987  7999999999753

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-33  Score=218.00  Aligned_cols=71  Identities=37%  Similarity=0.543  Sum_probs=68.9

Q ss_pred             CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhc
Q 017948            1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQ   73 (363)
Q Consensus         1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~   73 (363)
                      +||+||+|++|||+..|+|||+|||.||||||+||||||||+||||||||+||+|+|++  ++++.||+||..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s--~~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEEC--GGGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeC--CCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999986  899999999974

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.1e-33  Score=218.64  Aligned_cols=74  Identities=36%  Similarity=0.531  Sum_probs=70.4

Q ss_pred             CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCHH
Q 017948            2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQ   77 (363)
Q Consensus         2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~   77 (363)
                      ||+||+|++|||..+|+|||+|||+||||||+||||||||+||||||||+||+|+|++  ++|+.||+||...+..
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~s--p~v~~vl~r~~~~~~~   76 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEGRNLI   76 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccC--CCHHHHHHHHhcccHH
Confidence            8999999999999999999999999999999999999999999999999999999986  8999999999865543