Citrus Sinensis ID: 017949

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MATTNGSILATQSWDLTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKISDI
cccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHccccccccEEEEEcccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccEEEEcccccccccccccccccccccccccEEEEccccccEEEEEcccccEEEcccccccEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHccccccccccccccccc
ccccccccccccHHHHHHHccccccHHHHHHHcccccccHHcEcccccccccccccccccccEEEccccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHEcEHHHcEccEEEccccccccccccccEEEEEEEEcHHHccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccEEEEEEcccccccccEEcccccccccEEEEEEccccccEEEEEccccEEEEEcccccEEEEEEccHHHHHccccEEEEEEEEEEEccccEEEEEEEEccccccEccccHHHcccccccccccccHHHHHHHHHHcccccccHHHHHHHccc
mattngsilatqswdltdfvvnkghgvkglsemglkslpkqfhqpleerfsekkildqvsiplidmskwespeVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFalpaeekrkyskenspinnvrygssfvphVERALEWKDFLSLFYvseeetsafwppvckdeMLEYMRSSEVLIRRLMHVLVKGlnvkrideirepmllgsrrvnlnyypmcpnpeltvgvgrhsdisTFTILLQddigglhvrkdngtewihvapisgsliinVGDALqimsngryksVEHCVIAngsqnrisvplfvnpkpeailcpfpevlangekplykpvlcadysrhfytkahdgkktidfakisdi
mattngsilatqswdlTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFfalpaeekrkyskenspinnvrygSSFVPHVERALEWKDFLSLFYVSeeetsafwppvckDEMLEYMRSSEVLIRRLMHVLvkglnvkrideirepmlLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYtkahdgkktidfakisdi
MATTNGSILATQSWDLTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKISDI
*******ILATQSWDLTDFVVNKGHGVKGL**********************KKILDQVSIPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALP*************INNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDF******
*****************DFVVNKGHGVKGLSEMGLKSLPKQFHQPLE***********VSIPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYS**NS*INNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKISDI
MATTNGSILATQSWDLTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKISDI
***********QSWDLTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAK*S*I
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MATTNGSILATQSWDLTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKISDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q9LHN8361 Feruloyl CoA ortho-hydrox yes no 0.991 0.997 0.609 1e-134
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.947 0.952 0.626 1e-132
Q43383398 1-aminocyclopropane-1-car no no 0.873 0.796 0.369 1e-51
Q9LTH8364 1-aminocyclopropane-1-car no no 0.898 0.895 0.346 2e-50
Q84MB3365 1-aminocyclopropane-1-car no no 0.889 0.884 0.343 2e-49
Q9M2C4370 1-aminocyclopropane-1-car no no 0.878 0.862 0.343 6e-48
Q9LTH7366 1-aminocyclopropane-1-car no no 0.900 0.893 0.311 7e-46
Q9LSW7365 1-aminocyclopropane-1-car no no 0.898 0.893 0.319 1e-45
P10967363 1-aminocyclopropane-1-car N/A no 0.898 0.898 0.330 2e-45
Q9LSW6362 1-aminocyclopropane-1-car no no 0.892 0.895 0.328 3e-45
>sp|Q9LHN8|F6H1_ARATH Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 Back     alignment and function desciption
 Score =  478 bits (1230), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 220/361 (60%), Positives = 285/361 (78%), Gaps = 1/361 (0%)

Query: 1   MATTNGSILATQSWDLTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILD-QV 59
           MA T  +   +   ++TDFVV KG+GVKGLSE G+K+LP+Q+ QPLEER   K + +   
Sbjct: 1   MAPTLLTTQFSNPAEVTDFVVYKGNGVKGLSETGIKALPEQYIQPLEERLINKFVNETDE 60

Query: 60  SIPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKR 119
           +IP+IDMS  +   VA+++CD AE WGFFQ++NHGVPLEVL+ VK ATH+FF LP EEKR
Sbjct: 61  AIPVIDMSNPDEDRVAEAVCDAAEKWGFFQVINHGVPLEVLDDVKAATHKFFNLPVEEKR 120

Query: 120 KYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRS 179
           K++KENS    VR+G+SF P  E+ALEWKD+LSLF+VSE E   FWP +C++E LEY+  
Sbjct: 121 KFTKENSLSTTVRFGTSFSPLAEQALEWKDYLSLFFVSEAEAEQFWPDICRNETLEYINK 180

Query: 180 SEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDIST 239
           S+ ++RRL+  L K LNVK +DE +E + +GS RVNLNYYP+CPNP+LTVGVGRHSD+S+
Sbjct: 181 SKKMVRRLLEYLGKNLNVKELDETKESLFMGSIRVNLNYYPICPNPDLTVGVGRHSDVSS 240

Query: 240 FTILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGS 299
            TILLQD IGGLHVR      W+HV P++GS +IN+GDA+QIMSNG YKSVEH V+ANG 
Sbjct: 241 LTILLQDQIGGLHVRSLASGNWVHVPPVAGSFVINIGDAMQIMSNGLYKSVEHRVLANGY 300

Query: 300 QNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAK 359
            NRISVP+FVNPKPE+++ P PEV+ANGE+P+Y+ VL +DY ++F+ KAHDGKKT+D+AK
Sbjct: 301 NNRISVPIFVNPKPESVIGPLPEVIANGEEPIYRDVLYSDYVKYFFRKAHDGKKTVDYAK 360

Query: 360 I 360
           I
Sbjct: 361 I 361
2-oxoglutarate (OG)- and Fe(II)-dependent dioxygenase (2OGD)involved in scopoletin biosynthesis. Converts feruloyl CoA into 6'-hydroxyferuloyl CoA but has no activity with ferulic acid, feruloylquinic acid, caffeic acid, caffeoyl CoA, p-coumaric acid, cinnamic acid, cinnamoyl CoA or benzoyl CoA.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function description
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2C4|ACCH8_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 8 OS=Arabidopsis thaliana GN=At3g61400 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|P10967|ACCH3_SOLLC 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW6|ACH10_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 10 OS=Arabidopsis thaliana GN=At5g43450 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
354696022363 citrus dioxygenase [Citrus limetta] 1.0 1.0 0.966 0.0
224057036358 predicted protein [Populus trichocarpa] 0.961 0.974 0.708 1e-149
224052970361 2-oxoglutarate-dependent dioxygenase [Po 0.988 0.994 0.672 1e-147
225435724358 PREDICTED: 1-aminocyclopropane-1-carboxy 0.969 0.983 0.682 1e-145
225435722358 PREDICTED: 1-aminocyclopropane-1-carboxy 0.964 0.977 0.689 1e-145
358635024358 oxidoreductase [Ipomoea batatas] 0.977 0.991 0.646 1e-140
255569726362 leucoanthocyanidin dioxygenase, putative 0.983 0.986 0.649 1e-139
358635020358 oxidoreductase [Ipomoea batatas] 0.977 0.991 0.640 1e-139
255569732363 leucoanthocyanidin dioxygenase, putative 0.983 0.983 0.653 1e-139
358635022358 oxidoreductase [Ipomoea batatas] 0.977 0.991 0.640 1e-139
>gi|354696022|gb|AER36089.1| citrus dioxygenase [Citrus limetta] Back     alignment and taxonomy information
 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/363 (96%), Positives = 355/363 (97%)

Query: 1   MATTNGSILATQSWDLTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILDQVS 60
           MA TNGSILATQSWDLTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILDQVS
Sbjct: 1   MAPTNGSILATQSWDLTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILDQVS 60

Query: 61  IPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRK 120
           IPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRK
Sbjct: 61  IPLIDMSKWESPEVAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRK 120

Query: 121 YSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSS 180
           YSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSS
Sbjct: 121 YSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSS 180

Query: 181 EVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTF 240
           EV I+RLMHVLVK LNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTF
Sbjct: 181 EVFIKRLMHVLVKVLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTF 240

Query: 241 TILLQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQ 300
           TILLQDDIGGLHVRKDNGT+WIH APISGSLIIN+GDALQIMSNGR KS+EHCVIANGSQ
Sbjct: 241 TILLQDDIGGLHVRKDNGTDWIHAAPISGSLIINIGDALQIMSNGRNKSIEHCVIANGSQ 300

Query: 301 NRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKI 360
           NRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVL ADYSRHFYTKAHDGKKTIDFAKI
Sbjct: 301 NRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLYADYSRHFYTKAHDGKKTIDFAKI 360

Query: 361 SDI 363
            D 
Sbjct: 361 GDF 363

Source: Citrus limetta

Species: Citrus limetta

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224057036|ref|XP_002299115.1| predicted protein [Populus trichocarpa] gi|222846373|gb|EEE83920.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224052970|ref|XP_002297642.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222844900|gb|EEE82447.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435724|ref|XP_002285698.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225435722|ref|XP_002285699.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|358635024|dbj|BAL22345.1| oxidoreductase [Ipomoea batatas] Back     alignment and taxonomy information
>gi|255569726|ref|XP_002525827.1| leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223534832|gb|EEF36521.1| leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|358635020|dbj|BAL22343.1| oxidoreductase [Ipomoea batatas] Back     alignment and taxonomy information
>gi|255569732|ref|XP_002525830.1| leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223534835|gb|EEF36524.1| leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|358635022|dbj|BAL22344.1| oxidoreductase [Ipomoea batatas] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2086789361 AT3G13610 [Arabidopsis thalian 0.953 0.958 0.625 5.7e-123
TAIR|locus:2035671361 AT1G55290 [Arabidopsis thalian 0.947 0.952 0.626 1.3e-121
TAIR|locus:2090359357 AT3G12900 [Arabidopsis thalian 0.942 0.957 0.472 7.7e-87
TAIR|locus:505006595360 AT5G12270 [Arabidopsis thalian 0.966 0.975 0.430 2e-81
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.895 0.920 0.363 1e-52
TAIR|locus:2020798398 2A6 [Arabidopsis thaliana (tax 0.865 0.788 0.375 6.5e-51
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.898 0.895 0.346 1.7e-50
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.809 0.807 0.347 3.7e-48
TAIR|locus:2009130365 AT1G06620 [Arabidopsis thalian 0.895 0.890 0.348 1.2e-47
TAIR|locus:2098876370 AT3G61400 [Arabidopsis thalian 0.878 0.862 0.343 2e-47
TAIR|locus:2086789 AT3G13610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
 Identities = 217/347 (62%), Positives = 280/347 (80%)

Query:    15 DLTDFVVNKGHGVKGLSEMGLKSLPKQFHQPLEERFSEKKILD-QVSIPLIDMSKWESPE 73
             ++TDFVV KG+GVKGLSE G+K+LP+Q+ QPLEER   K + +   +IP+IDMS  +   
Sbjct:    15 EVTDFVVYKGNGVKGLSETGIKALPEQYIQPLEERLINKFVNETDEAIPVIDMSNPDEDR 74

Query:    74 VAKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRY 133
             VA+++CD AE WGFFQ++NHGVPLEVL+ VK ATH+FF LP EEKRK++KENS    VR+
Sbjct:    75 VAEAVCDAAEKWGFFQVINHGVPLEVLDDVKAATHKFFNLPVEEKRKFTKENSLSTTVRF 134

Query:   134 GSSFVPHVERALEWKDFLSLFYVSEEETSAFWPPVCKDEMLEYMRSSEVLIRRLMHVLVK 193
             G+SF P  E+ALEWKD+LSLF+VSE E   FWP +C++E LEY+  S+ ++RRL+  L K
Sbjct:   135 GTSFSPLAEQALEWKDYLSLFFVSEAEAEQFWPDICRNETLEYINKSKKMVRRLLEYLGK 194

Query:   194 GLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHV 253
              LNVK +DE +E + +GS RVNLNYYP+CPNP+LTVGVGRHSD+S+ TILLQD IGGLHV
Sbjct:   195 NLNVKELDETKESLFMGSIRVNLNYYPICPNPDLTVGVGRHSDVSSLTILLQDQIGGLHV 254

Query:   254 RKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKP 313
             R      W+HV P++GS +IN+GDA+QIMSNG YKSVEH V+ANG  NRISVP+FVNPKP
Sbjct:   255 RSLASGNWVHVPPVAGSFVINIGDAMQIMSNGLYKSVEHRVLANGYNNRISVPIFVNPKP 314

Query:   314 EAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKI 360
             E+++ P PEV+ANGE+P+Y+ VL +DY ++F+ KAHDGKKT+D+AKI
Sbjct:   315 ESVIGPLPEVIANGEEPIYRDVLYSDYVKYFFRKAHDGKKTVDYAKI 361
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0019748 "secondary metabolic process" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0010421 "hydrogen peroxide-mediated programmed cell death" evidence=IMP
GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP
GO:0051213 "dioxygenase activity" evidence=IDA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
TAIR|locus:2035671 AT1G55290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090359 AT3G12900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006595 AT5G12270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020798 2A6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098876 AT3G61400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LHN8F6H1_ARATH1, ., 1, 4, ., 1, 1, ., -0.60940.99170.9972yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.9LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0116007201
hypothetical protein (358 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-75
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-74
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 5e-67
PLN02947374 PLN02947, PLN02947, oxidoreductase 8e-64
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-63
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-59
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 8e-55
PLN02704335 PLN02704, PLN02704, flavonol synthase 4e-53
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-52
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 8e-52
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-51
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-51
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-50
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-48
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-45
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 5e-40
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 3e-39
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 2e-38
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 8e-37
PLN02997325 PLN02997, PLN02997, flavonol synthase 8e-35
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 3e-33
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 6e-31
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-30
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-30
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-29
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-28
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-27
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-08
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information 
 Score =  237 bits (607), Expect = 1e-75
 Identities = 119/358 (33%), Positives = 189/358 (52%), Gaps = 27/358 (7%)

Query: 27  VKGLSEMGLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSKWESP-EVAKSIC 79
           V+ L+  G+ S+PK++ +P EER      F E+K      +P++D+S  ES  EV +  C
Sbjct: 8   VEALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREAC 67

Query: 80  -----DTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYG 134
                  A  WG   +V HG+P ++L+RV++A   FF LP EEK KY+ + +      YG
Sbjct: 68  VEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYG 127

Query: 135 SSFVPHVERALEWKD-FLSLFYVSEEETSAFWP---PVCKDEMLEYMRSSEVLIRRLMHV 190
           S    +    LEW+D F  L    ++   + WP   P       EY RS   L  +L+ +
Sbjct: 128 SKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTPPDYVPATSEYSRSLRSLATKLLAI 187

Query: 191 LVKGLNVK--RIDE---IREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQ 245
           L  GL +   R+++     E +LL   ++ +NYYP CP P+L +GV  H+D+S  T +L 
Sbjct: 188 LSLGLGLPEDRLEKEVGGLEELLL---QMKINYYPRCPQPDLALGVEAHTDVSALTFILH 244

Query: 246 DDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISV 305
           + + GL V  +   +W+    +  S+++++GD L+I+SNGRYKS+ H  + N  + RIS 
Sbjct: 245 NMVPGLQVLYEG--KWVTAKCVPDSIVVHIGDTLEILSNGRYKSILHRGLVNKEKVRISW 302

Query: 306 PLFVNPKPEAILC-PFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKISD 362
            +F  P  E I+  P PE+++  E P + P     +  H   K    ++ ID A IS+
Sbjct: 303 AVFCEPPKEKIILKPLPELVSKEEPPKFPPRTFGQHVSHKLFKKPQDERNIDAADISN 360

Length = 360
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
PLN02947374 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02704335 flavonol synthase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.89
PLN03176120 flavanone-3-hydroxylase; Provisional 99.87
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.54
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.48
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 92.62
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 90.47
TIGR02466201 conserved hypothetical protein. This family consis 87.98
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 82.23
>PLN02947 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=1.9e-85  Score=641.52  Aligned_cols=337  Identities=34%  Similarity=0.613  Sum_probs=300.7

Q ss_pred             CCchHHHHhCCCCCCCCcccCCCCcccccccc-----CCCCCcceeeCCC---CCcHHHHHHHHHHHHhcCeEEEecCCC
Q 017949           24 GHGVKGLSEMGLKSLPKQFHQPLEERFSEKKI-----LDQVSIPLIDMSK---WESPEVAKSICDTAENWGFFQIVNHGV   95 (363)
Q Consensus        24 ~~~v~~l~~~~~~~~p~~y~~~~~~~~~~~~~-----~~~~~iPvIDls~---~~~~~~~~~l~~A~~~~GFF~l~nHGv   95 (363)
                      +.+||.|+++|+++||++|++|+++++.....     ....+||||||+.   ..+..++++|.+||++||||||+||||
T Consensus        25 ~~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI  104 (374)
T PLN02947         25 QKGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHGV  104 (374)
T ss_pred             ecCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCCC
Confidence            35899999999999999999999988753210     1335799999987   246779999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhCCCHHHHhhhccCCCCCCcccccCCcccCccccccccccccccccccccccCCCCc---chHHH
Q 017949           96 PLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEEETSAFWPP---VCKDE  172 (363)
Q Consensus        96 ~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~wP~---~fr~~  172 (363)
                      |.++++++++.+++||+||.|+|+++..... ....||+..+....++..+|+|.+.+...|.....+.||+   +||++
T Consensus       105 p~~li~~~~~~~~~FF~LP~eeK~k~~~~~~-~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr~~  183 (374)
T PLN02947        105 PSEVIGGMIDVARRFFELPLEERAKYMSADM-RAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLRKV  183 (374)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHhhhhcccC-CCCeeeccccccccccccCceeceeeecCCcccccccCccchHHHHHH
Confidence            9999999999999999999999999965432 2346787555444566789999988766665444688996   89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhhhhhhccccccceeeccCCCCCCCCCCCcccccCCCceEEEecCCCCC
Q 017949          173 MLEYMRSSEVLIRRLMHVLVKGLNVKR--IDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGG  250 (363)
Q Consensus       173 ~~~y~~~~~~la~~ll~~ls~~Lgl~~--~~~l~~~~~~~~~~lr~~~YPp~p~~~~~~g~~~HtD~~~lTiL~qd~v~G  250 (363)
                      +++|+++|.+|+.+||++|+++|||+.  .++|.+.+....+.+|+|||||||+|+.++|+++|||+|+||||+||+++|
T Consensus       184 ~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~v~G  263 (374)
T PLN02947        184 AATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDEVEG  263 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecCCCC
Confidence            999999999999999999999999961  456767676677889999999999999999999999999999999999999


Q ss_pred             ceeeeCCCCceEEecCCCCcEEEEecchhhhhcCCccccccccccCCCCCceeEEEEeecCCCCceEeCCccccCCCCCC
Q 017949          251 LHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKP  330 (363)
Q Consensus       251 LqV~~~g~~~W~~V~p~pg~lvVniGD~le~~TnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~Pl~~~v~~~~p~  330 (363)
                      |||+++|  +|++|+|+||+|||||||+||+||||+|||++|||++++.++||||+||++|+.|++|+|+++|+++++|+
T Consensus       264 LQV~~~g--~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~Pl~~lv~~~~p~  341 (374)
T PLN02947        264 LQIMHAG--RWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVNSTKPRISVASLHSLPFERVVGPAPELVDEQNPR  341 (374)
T ss_pred             eeEeECC--EEEeCCCCCCeEEEEeCceeeeeeCCEEeccccccccCCCCCEEEEEEEecCCCCCEEeCChHhcCCCCCC
Confidence            9999999  99999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHHccCCCCcccccccccCC
Q 017949          331 LYKPVLCADYSRHFYTKAHDGKKTIDFAKISDI  363 (363)
Q Consensus       331 ~y~~~~~~eyl~~~~~~~~~gk~~~~~~~~~~~  363 (363)
                      +|++++|+||++.++++...|++.++.+|+-+|
T Consensus       342 ~Y~~~~~~ey~~~~~~~~~~~~~~l~~~~~~~~  374 (374)
T PLN02947        342 RYMDTDFATFLAYLASAEGKHKNFLESRKLITI  374 (374)
T ss_pred             cCCCCCHHHHHHHHHHhccCchhhhhhhhccCC
Confidence            999999999999999999999999999998765

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-43
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-43
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 3e-42
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-29
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 5e-14
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 4e-13
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 1e-07
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 1e-07
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 178/340 (52%), Gaps = 29/340 (8%)
Query: 27  VKGLSEMGLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSKWESPE------V 74
           V+ L++ G+ S+PK++ +P EE       F E+K  D   +P ID+   ES +       
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 75  AKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYG 134
            + +   + +WG   ++NHG+P +++ERVK+A   FF+L  EEK KY+ + +      YG
Sbjct: 67  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 135 SSFVPHVERALEWKD-FLSLFYVSEEETSAFWPPVCKDEM---LEYMRSSEVLIRRLMHV 190
           S    +    LEW+D F  L Y  E+   + WP    D +    EY +   +L  ++   
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 191 LVKGLNV------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILL 244
           L  GL +      K +  + E +L    ++ +NYYP CP PEL +GV  H+D+S  T +L
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLL----QMKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 245 QDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRIS 304
            + + GL +  +   +W+    +  S+++++GD L+I+SNG+YKS+ H  + N  + RIS
Sbjct: 243 HNMVPGLQLFYEG--KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 305 VPLFVN-PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 343
             +F   PK + +L P PE+++      + P   A +  H
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 340
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-132
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-115
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-84
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 5e-84
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 3e-79
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 7e-73
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  380 bits (978), Expect = e-132
 Identities = 101/354 (28%), Positives = 177/354 (50%), Gaps = 27/354 (7%)

Query: 27  VKGLSEMGLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSKWESP------EV 74
           V+ L++ G+ S+PK++ +P EE       F E+K  D   +P ID+   ES         
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66

Query: 75  AKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYG 134
            + +   + +WG   ++NHG+P +++ERVK+A   FF+L  EEK KY+ + +      YG
Sbjct: 67  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126

Query: 135 SSFVPHVERALEWKDFLSLF-YVSEEETSAFWP---PVCKDEMLEYMRSSEVLIRRLMHV 190
           S    +    LEW+D+     Y  E+   + WP       +   EY +   +L  ++   
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186

Query: 191 LVKGLNVKRIDEIREPMLL---GSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDD 247
           L  GL ++  D + + +        ++ +NYYP CP PEL +GV  H+D+S  T +L + 
Sbjct: 187 LSVGLGLEP-DRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 245

Query: 248 IGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPL 307
           + GL +  +   +W+    +  S+++++GD L+I+SNG+YKS+ H  + N  + RIS  +
Sbjct: 246 VPGLQLFYEG--KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAV 303

Query: 308 FVNPKPEA-ILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKI 360
           F  P  +  +L P PE+++      + P   A +  H       GK+  +    
Sbjct: 304 FCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL----FGKEQEELVSE 353
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 94.49
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.61
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 90.92
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 85.51
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 85.45
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 80.95
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=4.9e-84  Score=629.53  Aligned_cols=329  Identities=29%  Similarity=0.564  Sum_probs=295.2

Q ss_pred             CCCchHHHHhCCCCCCCCcccCCCCccccccc---cC---CCCCcceeeCCC--CC----cHHHHHHHHHHHHhcCeEEE
Q 017949           23 KGHGVKGLSEMGLKSLPKQFHQPLEERFSEKK---IL---DQVSIPLIDMSK--WE----SPEVAKSICDTAENWGFFQI   90 (363)
Q Consensus        23 ~~~~v~~l~~~~~~~~p~~y~~~~~~~~~~~~---~~---~~~~iPvIDls~--~~----~~~~~~~l~~A~~~~GFF~l   90 (363)
                      ++++||+|+++++++||++|++|+++++....   ..   ...+||||||+.  .+    +.+++++|.+||++||||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v   82 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   82 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            46789999999999999999999888765321   11   123699999987  22    35689999999999999999


Q ss_pred             ecCCCCHHHHHHHHHHHHHhhCCCHHHHhhhccCCCCCCcccccCCcccCccccccccccccccccccc-cccCCCCc--
Q 017949           91 VNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEE-ETSAFWPP--  167 (363)
Q Consensus        91 ~nHGv~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~wP~--  167 (363)
                      +||||+.++++++++.+++||+||.|+|+++........++||+........+..||+|.|.+...|.. ..+|.||+  
T Consensus        83 ~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~  162 (356)
T 1gp6_A           83 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  162 (356)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             eCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcc
Confidence            999999999999999999999999999999987532135789987655556678899999998876654 56789997  


Q ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhc---cccccceeeccCCCCCCCCCCCcccccCCCceEEE
Q 017949          168 -VCKDEMLEYMRSSEVLIRRLMHVLVKGLNVKRIDEIREPML---LGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTIL  243 (363)
Q Consensus       168 -~fr~~~~~y~~~~~~la~~ll~~ls~~Lgl~~~~~l~~~~~---~~~~~lr~~~YPp~p~~~~~~g~~~HtD~~~lTiL  243 (363)
                       .||+.+++|+++|.+|+.+||++|+++|||+ +++|.+.+.   ...+.||+||||||++++.++|+++|||+|+||||
T Consensus       163 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~-~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL  241 (356)
T 1gp6_A          163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLE-PDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  241 (356)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-TTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence             9999999999999999999999999999999 999999887   46788999999999999999999999999999999


Q ss_pred             ecCCCCCceeeeCCCCceEEecCCCCcEEEEecchhhhhcCCccccccccccCCCCCceeEEEEeecCCCCc-eEeCCcc
Q 017949          244 LQDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEA-ILCPFPE  322 (363)
Q Consensus       244 ~qd~v~GLqV~~~g~~~W~~V~p~pg~lvVniGD~le~~TnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~-~i~Pl~~  322 (363)
                      +||+++||||+++|  +|++|+|+||+|||||||+||+||||+|||++|||++++.++|||++||++|+.|+ +|+|+++
T Consensus       242 ~qd~v~GLQV~~~g--~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~  319 (356)
T 1gp6_A          242 LHNMVPGLQLFYEG--KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPE  319 (356)
T ss_dssp             EECSCCCEEEEETT--EEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGG
T ss_pred             EEcCCCCeEEecCC--cEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChh
Confidence            99999999999999  99999999999999999999999999999999999999889999999999999999 9999999


Q ss_pred             ccCCCCCCCCCCccHHHHHHHHHHccCCCCcc
Q 017949          323 VLANGEKPLYKPVLCADYSRHFYTKAHDGKKT  354 (363)
Q Consensus       323 ~v~~~~p~~y~~~~~~eyl~~~~~~~~~gk~~  354 (363)
                      ++++++|++|+++||+||+..++.++++|+..
T Consensus       320 ~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          320 MVSVESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             GCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             hcCCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            99999999999999999999999888877643
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 6e-71
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-59
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 4e-56
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 8e-41
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  223 bits (568), Expect = 6e-71
 Identities = 98/344 (28%), Positives = 173/344 (50%), Gaps = 22/344 (6%)

Query: 27  VKGLSEMGLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSKWESP------EV 74
           V+ L++ G+ S+PK++ +P EE       F E+K  D   +P ID+   ES         
Sbjct: 6   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65

Query: 75  AKSICDTAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYG 134
            + +   + +WG   ++NHG+P +++ERVK+A   FF+L  EEK KY+ + +      YG
Sbjct: 66  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125

Query: 135 SSFVPHVERALEWKDFLSLFYVSEEETSAFW----PPVCKDEMLEYMRSSEVLIRRLMH- 189
           S    +    LEW+D+       EE+         P    +   EY +   +L  ++   
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185

Query: 190 -VLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDI 248
             +  GL   R+++    +     ++ +NYYP CP PEL +GV  H+D+S  T +L + +
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 245

Query: 249 GGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLF 308
            GL +  +   +W+    +  S+++++GD L+I+SNG+YKS+ H  + N  + RIS  +F
Sbjct: 246 PGLQLFYEG--KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 303

Query: 309 VNPKPEA-ILCPFPEVLANGEKPLYKPVLCADYSRH-FYTKAHD 350
             P  +  +L P PE+++      + P   A +  H  + K  +
Sbjct: 304 CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQE 347
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.66
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.6e-80  Score=597.11  Aligned_cols=321  Identities=30%  Similarity=0.571  Sum_probs=285.0

Q ss_pred             CCchHHHHhCCCCCCCCcccCCCCccccccc------cCCCCCcceeeCCC--C----CcHHHHHHHHHHHHhcCeEEEe
Q 017949           24 GHGVKGLSEMGLKSLPKQFHQPLEERFSEKK------ILDQVSIPLIDMSK--W----ESPEVAKSICDTAENWGFFQIV   91 (363)
Q Consensus        24 ~~~v~~l~~~~~~~~p~~y~~~~~~~~~~~~------~~~~~~iPvIDls~--~----~~~~~~~~l~~A~~~~GFF~l~   91 (363)
                      +..||+|+++|+++||++|++|+++++....      .....+||||||+.  .    .+.+++++|.+||++||||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            5689999999999999999999999887632      23456899999987  2    2457899999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhhCCCHHHHhhhccCCCCCCcccccCCcccCccccccccccccccccccc-cccCCCCc---
Q 017949           92 NHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLSLFYVSEE-ETSAFWPP---  167 (363)
Q Consensus        92 nHGv~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~wP~---  167 (363)
                      ||||+.++++++++++++||+||.|+|++|......+.+.||+........+..+|.+.+.....+.. ..++.||+   
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~  162 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  162 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            99999999999999999999999999999987544344556665555556667788877654444444 56789997   


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhcc---ccccceeeccCCCCCCCCCCCcccccCCCceEEEe
Q 017949          168 VCKDEMLEYMRSSEVLIRRLMHVLVKGLNVKRIDEIREPMLL---GSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILL  244 (363)
Q Consensus       168 ~fr~~~~~y~~~~~~la~~ll~~ls~~Lgl~~~~~l~~~~~~---~~~~lr~~~YPp~p~~~~~~g~~~HtD~~~lTiL~  244 (363)
                      .|++.+++|+++|.+|+++|+++++++||++ +++|.+.+..   ..+.+|++|||||+.++..+|+++|||+|+||||+
T Consensus       163 ~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~-~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~  241 (349)
T d1gp6a_         163 DYIEATSEYAKCLRLLATKVFKALSVGLGLE-PDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  241 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-TTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHcCCC-HHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEe
Confidence            8999999999999999999999999999999 9999888743   45679999999999999999999999999999999


Q ss_pred             cCCCCCceeeeCCCCceEEecCCCCcEEEEecchhhhhcCCccccccccccCCCCCceeEEEEeecCCCCceE-eCCccc
Q 017949          245 QDDIGGLHVRKDNGTEWIHVAPISGSLIINVGDALQIMSNGRYKSVEHCVIANGSQNRISVPLFVNPKPEAIL-CPFPEV  323 (363)
Q Consensus       245 qd~v~GLqV~~~g~~~W~~V~p~pg~lvVniGD~le~~TnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i-~Pl~~~  323 (363)
                      |+.++||||+++|  +|++|+|.+|++|||+||+||+||||+|||++|||+.+++++||||+||++|+.|++| +|+|+|
T Consensus       242 q~~~~GLqv~~~g--~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~  319 (349)
T d1gp6a_         242 HNMVPGLQLFYEG--KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEM  319 (349)
T ss_dssp             ECSCCCEEEEETT--EEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGG
T ss_pred             ccCCcceeeecCC--ceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHH
Confidence            9999999999999  9999999999999999999999999999999999999999999999999999999865 899999


Q ss_pred             cCCCCCCCCCCccHHHHHHHHHHc
Q 017949          324 LANGEKPLYKPVLCADYSRHFYTK  347 (363)
Q Consensus       324 v~~~~p~~y~~~~~~eyl~~~~~~  347 (363)
                      |++++|++|++||++||++.++..
T Consensus       320 v~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         320 VSVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             CCSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCccHHHHHHHHHhc
Confidence            999999999999999999998743
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure