Citrus Sinensis ID: 017954

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MEVCYNANTIAGHPDVHSPVTTLTKENAPAFYEPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKGDDGRWRLLVKKVVSAKTISSLSQQKRKRMEESRGTMGDYSIRSFKL
cccccccccccccccccccHHHHHHHHccccccccEEEEcccccEEEHHHHHHHcccHHHHHHHccccccccccccEEEccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccc
ccEEEEcEEcccccccccHHHHHHHHHHHHcccccEEEEEccccEccHHHHHHHcccHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEcc
mevcynantiaghpdvhspvttltkenapafyepdvqiltsgglripvHASILVsaspvleniidrprkhrssekvipilgvpcgavsSFVGFLYTSRCTEEEMEKYGIHLLALShvysvpqlkqrctkglgerltiDNVVDVLQLarlcdapdLYLRCMKLAASRFKAVEKTEGwkflqdhdpwLELQILQFMDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHIctegctsvgpyevgptknrgpcskfatcQGLQLLIRHFATCKkrvnggclrcKRMWQLLRLHssmceqsdscrvplcRQFKLKAQLEKKGDDGRWRLLVKKVVSAKTISSLSQQKRKRMEesrgtmgdysirsfkl
MEVCYNAntiaghpdvhspVTTLTKENAPAFYEPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAqlekkgddgrwrLLVKKvvsaktisslsqqkrkrmeesrgtmgdysirsfkl
MEVCYNANTIAGHPDVHSPVTTLTKENAPAFYEPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDEAESrikrtrrrrQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKGDDGRWRLLVKKVVSAKTISSLSQQKRKRMEESRGTMGDYSIRSFKL
***CYNANTIAGHPDVHSPVTTLTKENAPAFYEPDVQILTSGGLRIPVHASILVSASPVLENIIDR*******EKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDE***************GLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKGDDGRWRLLVKKVVSA*******************************
*******NTIAGHPDVHSPVTTLTKENAPAFYEPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDE******************LQLSEAMECLEHICTEGCTSVGPYE******RGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCR********************VKK*****************************IRS***
MEVCYNANTIAGHPDVHSPVTTLTKENAPAFYEPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKGDDGRWRLLVKKVVSAK********************GDYSIRSFKL
MEVCYNANTIAGHPDVHSPVTTLTKENAPAFYEPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKGDDGRWRLLVKKVVSAKTISS**************************
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oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEVCYNANTIAGHPDVHSPVTTLTKENAPAFYEPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKGDDGRWRLLVKKVVSAKTISSLSQQKRKRMEESRGTMGDYSIRSFKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q9FMK7365 BTB/POZ and TAZ domain-co yes no 0.840 0.835 0.675 1e-115
Q94BN0364 BTB/POZ and TAZ domain-co no no 0.876 0.873 0.630 1e-113
Q9FJX5372 BTB/POZ and TAZ domain-co no no 0.870 0.849 0.449 3e-69
Q9SYL0364 BTB/POZ and TAZ domain-co no no 0.815 0.813 0.428 9e-63
Q6EJ98368 BTB/POZ and TAZ domain-co no no 0.862 0.850 0.400 2e-61
Q9C5X91697 Histone acetyltransferase no no 0.217 0.046 0.375 9e-10
Q6YXY21668 Probable histone acetyltr no no 0.225 0.049 0.369 2e-09
Q9FWQ51706 Histone acetyltransferase no no 0.264 0.056 0.339 2e-09
Q6DBN1243 BTB/POZ domain-containing no no 0.410 0.613 0.292 2e-08
Q94420395 Protein maternal effect l yes no 0.506 0.465 0.248 2e-08
>sp|Q9FMK7|BT1_ARATH BTB/POZ and TAZ domain-containing protein 1 OS=Arabidopsis thaliana GN=BT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  414 bits (1063), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/314 (67%), Positives = 251/314 (79%), Gaps = 9/314 (2%)

Query: 31  FYEPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHR--SSEKVIPILGVPCGAVS 88
             E DV+I+TSG   IP H+ IL S SPVL NII++PRK    SS+KVI ILGVPC AVS
Sbjct: 22  LVETDVEIITSGRRSIPAHSGILASVSPVLTNIIEKPRKIHGGSSKKVIKILGVPCDAVS 81

Query: 89  SFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLAR 148
            FV FLY+   TE EMEKYGIHLLALSHVY V QLKQRCTKG+GER+T +NVVD+LQLAR
Sbjct: 82  VFVRFLYSPSVTENEMEKYGIHLLALSHVYMVTQLKQRCTKGVGERVTAENVVDILQLAR 141

Query: 149 LCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDEAESRIKRTRRRR 208
           LCDAPDL L+CM+    +FK VE+TEGWKFLQ+HDP+LEL ILQF+D+AESR KR RR R
Sbjct: 142 LCDAPDLCLKCMRFIHYKFKTVEQTEGWKFLQEHDPFLELDILQFIDDAESRKKRRRRHR 201

Query: 209 QEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNR-----GPCSKFATCQGLQLLIR 263
           +EQ LYLQLSEAMEC+EHICTEGCT VGP      K+      GPCS F+TC GLQLLIR
Sbjct: 202 REQNLYLQLSEAMECIEHICTEGCTLVGPSSNLDNKSTCQAKPGPCSAFSTCYGLQLLIR 261

Query: 264 HFATCKKRVNG-GCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKG-DDGR 321
           HFA CKKRV+G GC+RCKRM QLLRLHSS+C+QS+SCRVPLCRQ+K + + +KK  +D +
Sbjct: 262 HFAVCKKRVDGKGCVRCKRMIQLLRLHSSICDQSESCRVPLCRQYKNRGEKDKKMVEDTK 321

Query: 322 WRLLVKKVVSAKTI 335
           W++LV++V SAK +
Sbjct: 322 WKVLVRRVASAKAM 335
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Also targeted for degradation by the 26S proteasome pathway. May be involved in gametophyte development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q94BN0|BT2_ARATH BTB/POZ and TAZ domain-containing protein 2 OS=Arabidopsis thaliana GN=BT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FJX5|BT4_ARATH BTB/POZ and TAZ domain-containing protein 4 OS=Arabidopsis thaliana GN=BT4 PE=1 SV=1 Back     alignment and function description
>sp|Q9SYL0|BT3_ARATH BTB/POZ and TAZ domain-containing protein 3 OS=Arabidopsis thaliana GN=BT3 PE=1 SV=2 Back     alignment and function description
>sp|Q6EJ98|BT5_ARATH BTB/POZ and TAZ domain-containing protein 5 OS=Arabidopsis thaliana GN=BT5 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5X9|HAC1_ARATH Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6YXY2|HACL1_ORYSJ Probable histone acetyltransferase HAC-like 1 OS=Oryza sativa subsp. japonica GN=Os02g0137500 PE=3 SV=2 Back     alignment and function description
>sp|Q9FWQ5|HAC12_ARATH Histone acetyltransferase HAC12 OS=Arabidopsis thaliana GN=HAC12 PE=2 SV=2 Back     alignment and function description
>sp|Q6DBN1|Y4845_ARATH BTB/POZ domain-containing protein At4g08455 OS=Arabidopsis thaliana GN=At4g08455 PE=1 SV=1 Back     alignment and function description
>sp|Q94420|MEL26_CAEEL Protein maternal effect lethal 26 OS=Caenorhabditis elegans GN=mel-26 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
255540423363 protein binding protein, putative [Ricin 0.928 0.928 0.756 1e-152
224136001344 predicted protein [Populus trichocarpa] 0.909 0.959 0.731 1e-142
224121870364 predicted protein [Populus trichocarpa] 0.906 0.903 0.725 1e-142
225456816351 PREDICTED: BTB/POZ and TAZ domain-contai 0.955 0.988 0.721 1e-137
297733653347 unnamed protein product [Vitis vinifera] 0.920 0.962 0.746 1e-137
356563157346 PREDICTED: BTB/POZ and TAZ domain-contai 0.911 0.956 0.701 1e-135
255645725351 unknown [Glycine max] 0.911 0.943 0.687 1e-133
357477211362 Speckle-type POZ protein [Medicago trunc 0.906 0.908 0.693 1e-131
449469588393 PREDICTED: BTB/POZ and TAZ domain-contai 0.950 0.877 0.653 1e-129
283132373345 BTB/POZ domain-containing protein [Lotus 0.911 0.959 0.667 1e-128
>gi|255540423|ref|XP_002511276.1| protein binding protein, putative [Ricinus communis] gi|223550391|gb|EEF51878.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/337 (75%), Positives = 296/337 (87%)

Query: 27  NAPAFYEPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGA 86
           N+    EPDVQILTSGGLRIPVH+SIL S S VLENIIDRPRKHRSSE++IPILGVPC A
Sbjct: 27  NSRELPEPDVQILTSGGLRIPVHSSILASVSSVLENIIDRPRKHRSSERIIPILGVPCDA 86

Query: 87  VSSFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQL 146
           VS FV F+Y++RCTE+E+EK+GIHLLALSHVY VPQLKQRC K +G+RLT+DNVVDVLQL
Sbjct: 87  VSVFVRFIYSARCTEDELEKFGIHLLALSHVYLVPQLKQRCAKDVGQRLTVDNVVDVLQL 146

Query: 147 ARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDEAESRIKRTRR 206
           ARLCDAPDLYL+CMKL  + FK+VEKTEGW+F+Q+HDP+LE +ILQF+DEAE R KRTRR
Sbjct: 147 ARLCDAPDLYLKCMKLITNHFKSVEKTEGWEFMQNHDPFLEYEILQFIDEAELRKKRTRR 206

Query: 207 RRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFA 266
            RQEQ LY++L  AM+CLEHICTEGCTSVGPY+V PTK R PC+KF+TCQGLQLLI+HFA
Sbjct: 207 HRQEQSLYMELGVAMDCLEHICTEGCTSVGPYDVQPTKKRVPCNKFSTCQGLQLLIKHFA 266

Query: 267 TCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKGDDGRWRLLV 326
           TCK RVNGGC RCKRMWQLLRLH+SMC+Q DSCRVPLCRQFKLK Q EKKGDD  W+LLV
Sbjct: 267 TCKNRVNGGCSRCKRMWQLLRLHASMCDQPDSCRVPLCRQFKLKMQHEKKGDDALWKLLV 326

Query: 327 KKVVSAKTISSLSQQKRKRMEESRGTMGDYSIRSFKL 363
           +KVVSA+ +SSLS  KRKR E+ + T+ D+ IR+F+L
Sbjct: 327 RKVVSARVLSSLSLPKRKREEQLKETIHDHGIRTFRL 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224136001|ref|XP_002322214.1| predicted protein [Populus trichocarpa] gi|222869210|gb|EEF06341.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224121870|ref|XP_002318693.1| predicted protein [Populus trichocarpa] gi|222859366|gb|EEE96913.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225456816|ref|XP_002278192.1| PREDICTED: BTB/POZ and TAZ domain-containing protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733653|emb|CBI14900.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563157|ref|XP_003549831.1| PREDICTED: BTB/POZ and TAZ domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|255645725|gb|ACU23356.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357477211|ref|XP_003608891.1| Speckle-type POZ protein [Medicago truncatula] gi|355509946|gb|AES91088.1| Speckle-type POZ protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449469588|ref|XP_004152501.1| PREDICTED: BTB/POZ and TAZ domain-containing protein 1-like [Cucumis sativus] gi|449503696|ref|XP_004162131.1| PREDICTED: BTB/POZ and TAZ domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|283132373|dbj|BAI63592.1| BTB/POZ domain-containing protein [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2161962365 BT1 "BTB and TAZ domain protei 0.867 0.863 0.663 1.4e-110
TAIR|locus:2101135364 BT2 "BTB and TAZ domain protei 0.873 0.870 0.613 7.5e-105
TAIR|locus:2031993364 BT3 "BTB and TAZ domain protei 0.812 0.810 0.42 6.9e-63
TAIR|locus:2120056368 BT5 "BTB and TAZ domain protei 0.809 0.798 0.415 1.1e-57
TAIR|locus:504955382243 AT4G08455 [Arabidopsis thalian 0.407 0.609 0.294 2.9e-08
TAIR|locus:20156761706 HAC12 "histone acetyltransfera 0.231 0.049 0.364 3.4e-07
WB|WBGene00003209395 mel-26 [Caenorhabditis elegans 0.446 0.410 0.265 5.2e-07
UNIPROTKB|Q94420395 mel-26 "Protein maternal effec 0.446 0.410 0.265 5.2e-07
TAIR|locus:2020522329 AT1G55760 "AT1G55760" [Arabido 0.440 0.486 0.266 9.5e-07
TAIR|locus:20892851670 HAC5 "histone acetyltransferas 0.209 0.045 0.375 1.7e-06
TAIR|locus:2161962 BT1 "BTB and TAZ domain protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 215/324 (66%), Positives = 256/324 (79%)

Query:    33 EPDVQILTSGGLRIPVHASILVSASPVLENIIDRPRK-HR-SSEKVIPILGVPCGAVSSF 90
             E DV+I+TSG   IP H+ IL S SPVL NII++PRK H  SS+KVI ILGVPC AVS F
Sbjct:    24 ETDVEIITSGRRSIPAHSGILASVSPVLTNIIEKPRKIHGGSSKKVIKILGVPCDAVSVF 83

Query:    91 VGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLC 150
             V FLY+   TE EMEKYGIHLLALSHVY V QLKQRCTKG+GER+T +NVVD+LQLARLC
Sbjct:    84 VRFLYSPSVTENEMEKYGIHLLALSHVYMVTQLKQRCTKGVGERVTAENVVDILQLARLC 143

Query:   151 DAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQFMDEAESXXXXXXXXXQE 210
             DAPDL L+CM+    +FK VE+TEGWKFLQ+HDP+LEL ILQF+D+AES         +E
Sbjct:   144 DAPDLCLKCMRFIHYKFKTVEQTEGWKFLQEHDPFLELDILQFIDDAESRKKRRRRHRRE 203

Query:   211 QGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNR-----GPCSKFATCQGLQLLIRHF 265
             Q LYLQLSEAMEC+EHICTEGCT VGP      K+      GPCS F+TC GLQLLIRHF
Sbjct:   204 QNLYLQLSEAMECIEHICTEGCTLVGPSSNLDNKSTCQAKPGPCSAFSTCYGLQLLIRHF 263

Query:   266 ATCKKRVNG-GCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKG-DDGRWR 323
             A CKKRV+G GC+RCKRM QLLRLHSS+C+QS+SCRVPLCRQ+K + + +KK  +D +W+
Sbjct:   264 AVCKKRVDGKGCVRCKRMIQLLRLHSSICDQSESCRVPLCRQYKNRGEKDKKMVEDTKWK 323

Query:   324 LLVKKVVSAKTISSLSQQKRKRME 347
             +LV++V SAK +SSLSQ K+K+ E
Sbjct:   324 VLVRRVASAKAMSSLSQSKKKKSE 347
GO:0003712 "transcription cofactor activity" evidence=IEA
GO:0004402 "histone acetyltransferase activity" evidence=IEA
GO:0005634 "nucleus" evidence=IEA;IDA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0005516 "calmodulin binding" evidence=IDA
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0042542 "response to hydrogen peroxide" evidence=IEP
GO:0009553 "embryo sac development" evidence=IGI
GO:0009555 "pollen development" evidence=IGI
GO:0009733 "response to auxin stimulus" evidence=IEP
TAIR|locus:2101135 BT2 "BTB and TAZ domain protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031993 BT3 "BTB and TAZ domain protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120056 BT5 "BTB and TAZ domain protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955382 AT4G08455 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015676 HAC12 "histone acetyltransferase of the CBP family 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00003209 mel-26 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q94420 mel-26 "Protein maternal effect lethal 26" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2020522 AT1G55760 "AT1G55760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089285 HAC5 "histone acetyltransferase of the CBP family 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FMK7BT1_ARATHNo assigned EC number0.67510.84020.8356yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XV000621
hypothetical protein (344 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
smart0055179 smart00551, ZnF_TAZ, TAZ zinc finger, present in p 9e-11
pfam0213574 pfam02135, zf-TAZ, TAZ zinc finger 5e-07
pfam00651101 pfam00651, BTB, BTB/POZ domain 5e-06
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 7e-05
>gnl|CDD|214717 smart00551, ZnF_TAZ, TAZ zinc finger, present in p300 and CBP Back     alignment and domain information 
 Score = 57.4 bits (139), Expect = 9e-11
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 20/94 (21%)

Query: 214 YLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKR-- 271
           Y QL   +E L H     C +           R    ++  C+ ++ L+RH  +CK R  
Sbjct: 4   YKQLQRWLELLVHARR--CKA-----------REAKCQYPNCKTMKKLLRHMDSCKVRKC 50

Query: 272 VNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCR 305
             G C  CK++WQ    HS  C +  +C V  C 
Sbjct: 51  KYGYCASCKQLWQ----HSKHC-KDSNCPVCKCV 79

Length = 79
>gnl|CDD|216893 pfam02135, zf-TAZ, TAZ zinc finger Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
KOG1778319 consensus CREB binding protein/P300 and related TA 100.0
PHA02713 557 hypothetical protein; Provisional 99.94
PHA02790 480 Kelch-like protein; Provisional 99.94
PHA03098 534 kelch-like protein; Provisional 99.93
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.93
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.91
smart0055179 ZnF_TAZ TAZ zinc finger, present in p300 and CBP. 99.81
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.8
KOG4591280 consensus Uncharacterized conserved protein, conta 99.8
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.72
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.66
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.65
KOG4682488 consensus Uncharacterized conserved protein, conta 99.59
PF0213575 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc 99.22
KOG0511516 consensus Ankyrin repeat protein [General function 98.78
KOG2838401 consensus Uncharacterized conserved protein, conta 98.48
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.46
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 98.09
KOG2716230 consensus Polymerase delta-interacting protein PDI 98.09
KOG2838401 consensus Uncharacterized conserved protein, conta 97.91
KOG3473112 consensus RNA polymerase II transcription elongati 97.87
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.67
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 97.45
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.36
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 97.29
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.24
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 96.98
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 96.77
KOG0511516 consensus Ankyrin repeat protein [General function 96.3
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 95.66
KOG2714 465 consensus SETA binding protein SB1 and related pro 94.99
KOG1665302 consensus AFH1-interacting protein FIP2, contains 94.76
KOG2715210 consensus Uncharacterized conserved protein, conta 88.96
PF0213575 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc 87.75
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 83.56
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=5e-38  Score=296.67  Aligned_cols=290  Identities=42%  Similarity=0.673  Sum_probs=254.2

Q ss_pred             CEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHHHHHHhhhCCCcCccchHHHHHHHHHH
Q 017954           35 DVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVSSFVGFLYTSRCTEEEMEKYGIHLLAL  114 (363)
Q Consensus        35 DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~~~L~flYt~~~~~~~~~~~~~~Ll~l  114 (363)
                      |+..+..++..+.+|+.+|+..|+.|..+.... ...+..+.+.+.+++..++..+.+++|.+ ++..++.....+++.+
T Consensus        27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~  104 (319)
T KOG1778|consen   27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQP-CRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLAL  104 (319)
T ss_pred             chhhhhhhhhhhHHHHhcccccchHHHHHHhhh-cchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhh
Confidence            455554466789999999999999999887766 33244556888899999999999999998 6655556889999999


Q ss_pred             HhhcCchhHHHHHHHHHHh-cCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcchhhhhccccChHHHHHHHHH
Q 017954          115 SHVYSVPQLKQRCTKGLGE-RLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEGWKFLQDHDPWLELQILQF  193 (363)
Q Consensus       115 Ad~y~v~~Lk~~ce~~L~~-~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~~v~~~e~f~~L~~~~p~l~~ell~~  193 (363)
                      .+.|.++.++..|...+.. .++..+++.++..+..|+.+.|...+...+...|....+++.|..+....+.+.+  ...
T Consensus       105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~~c~~~~--~~~  182 (319)
T KOG1778|consen  105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCPICKLEV--LTA  182 (319)
T ss_pred             hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecCcccccc--ccc
Confidence            9999999999999888877 4789999999999999999999999999999999999999999888877666654  555


Q ss_pred             HHhhhhhhhhhhhhhhhhhHHHhhhhhHHHHHHHhhhcCCCCCCCcCCCCCCCCCCCCCcchhhhhHhhhhhcccccccC
Q 017954          194 MDEAESRIKRTRRRRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVN  273 (363)
Q Consensus       194 ~~~~~~~~~~~~r~~~e~~vy~~l~~~~~~l~h~~~~~~~~~~p~~~~~~~~~~~c~~~~~c~~l~~l~~H~~~c~~r~~  273 (363)
                      +...........+...++..|.|+.+++.+    |++||.++||+.+..+.++++|+ |+.|.++++|++|++.|++|  
T Consensus       183 ~~c~~~~d~d~~~~~~~k~~h~h~~~~~~~----~~~~~~~~~~~~~~i~~~~~~C~-~~~C~~~k~lirH~~~Ck~R--  255 (319)
T KOG1778|consen  183 WHCEVCPDYDRCRACEEKPLHPHLYEAMES----CTDGCATIGPRNKSINRRDANCS-YPSCNGLKRLIRHFRGCKLR--  255 (319)
T ss_pred             cccccCCchhhhhcccCCCCCCcchhcccc----cccccccccchhhhhccCCCCCC-CchhHHHHHHHHHHHHHHhc--
Confidence            555566666777777888889999999888    89999999999999987789999 99999999999999999999  


Q ss_pred             CCChhhHHHHHHHHHHHhhcCCCCCCcCCcchHhHHHHhhhhcC-chhHHHHHHHHHHhhhhcc
Q 017954          274 GGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKG-DDGRWRLLVKKVVSAKTIS  336 (363)
Q Consensus       274 ~gc~~c~r~~~l~~~h~~~c~~~~~c~vp~c~~~k~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  336 (363)
                      |||++|++||||++|||++|++++ |+||+|+++|+++++++++ ++.+|++++++|..++.++
T Consensus       256 ~gC~iCk~m~~L~~lha~~c~~~~-C~vP~c~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T KOG1778|consen  256 GGCPICKRLWQLLELHARHCDDSK-CKVPLCRNLKQKLEKQQKQADERRWKLLVRRVAGTKADG  318 (319)
T ss_pred             cCCchHHHHHHHHHHHHHHccccc-CCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHhhhccc
Confidence            999999999999999999999998 9999999999999999776 9999999999998877654

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3t92_A121 Crystal Structure Of The Taz2:cEBPEPSILON-Tad Chime 2e-05
2k8f_A90 Structural Basis For The Regulation Of P53 Function 5e-05
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 5e-05
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 8e-05
3io2_A114 Crystal Structure Of The Taz2 Domain Of P300 Length 2e-04
1f81_A88 Solution Structure Of The Taz2 Domain Of The Transc 3e-04
2ka6_A92 Nmr Structure Of The Cbp-Taz2STAT1-Tad Complex Leng 3e-04
>pdb|3T92|A Chain A, Crystal Structure Of The Taz2:cEBPEPSILON-Tad Chimera Protein Length = 121 Back     alignment and structure 
Iteration: 1

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 254 TCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLK--- 310
           +CQ ++ +++H   CK++ NGGC  CK++  L   H+  C Q + C VP C   K K   
Sbjct: 35  SCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHC-QENKCPVPFCLNIKQKLRQ 93
Query: 311 AQLEKKGD 318
            QLE   D
Sbjct: 94  QQLEASID 101
>pdb|2K8F|A Chain A, Structural Basis For The Regulation Of P53 Function By P300 Length = 90 Back     alignment and structure
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|3IO2|A Chain A, Crystal Structure Of The Taz2 Domain Of P300 Length = 114 Back     alignment and structure
>pdb|1F81|A Chain A, Solution Structure Of The Taz2 Domain Of The Transcriptional Adaptor Protein Cbp Length = 88 Back     alignment and structure
>pdb|2KA6|A Chain A, Nmr Structure Of The Cbp-Taz2STAT1-Tad Complex Length = 92 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3t92_A121 Histone acetyltransferase P300 TAZ2-ccaat/enhance 6e-25
3p57_P112 Histone acetyltransferase P300; protein-DNA comple 7e-25
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 8e-20
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 2e-18
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 2e-12
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 2e-11
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 1e-09
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 2e-06
1l3e_B101 P300 protein; protein-protein complex, transcripti 4e-04
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon; TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens} PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A Length = 121 Back     alignment and structure
 Score = 97.1 bits (241), Expect = 6e-25
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 24/135 (17%)

Query: 207 RRQEQGLYLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFA 266
           +       L +  A++ L H     C +              CS   +CQ ++ +++H  
Sbjct: 3   QSPGDSRRLSIQRAIQSLVHAAQ--CRN------------ANCS-LPSCQKMKRVVQHTK 47

Query: 267 TCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLKAQLEKKGD-------- 318
            CK++ NGGC  CK++  L   H+  C+++  C VP C   K K + ++           
Sbjct: 48  GCKRKTNGGCPICKQLIALAAYHAKHCQENK-CPVPFCLNIKQKLRQQQLEASIDLSAYI 106

Query: 319 DGRWRLLVKKVVSAK 333
           +     L+  + + K
Sbjct: 107 ESGEEQLLSDLFAVK 121
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 2ka6_A 2kje_A 3io2_A 1f81_A 2k8f_A Length = 112 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A Length = 101 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.97
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.96
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.96
3t92_A121 Histone acetyltransferase P300 TAZ2-ccaat/enhance 99.95
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.95
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.94
3p57_P112 Histone acetyltransferase P300; protein-DNA comple 99.94
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.87
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.87
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.87
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.87
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.85
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.85
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.85
2vpk_A116 Myoneurin; transcription regulation, transcription 99.85
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.84
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.82
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.82
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.81
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.81
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.78
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.76
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.47
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.27
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.14
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.03
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.66
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.62
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.56
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 98.46
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.25
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.19
1l3e_B101 P300 protein; protein-protein complex, transcripti 98.06
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.98
3kvt_A115 Potassium channel protein SHAW; tetramerization do 95.8
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 94.95
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 94.56
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 94.36
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 93.15
1l3e_B101 P300 protein; protein-protein complex, transcripti 91.71
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 85.87
3t92_A121 Histone acetyltransferase P300 TAZ2-ccaat/enhance 84.64
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
Probab=99.97  E-value=4.3e-30  Score=224.00  Aligned_cols=160  Identities=24%  Similarity=0.362  Sum_probs=142.8

Q ss_pred             CCCCCCCCcchhHHhHhhccCC---CCEEEEecCCeEEeecHHHHHhccHHHHHhhcCCCCCCCCCCeEEeCCCCHHHHH
Q 017954           12 GHPDVHSPVTTLTKENAPAFYE---PDVQILTSGGLRIPVHASILVSASPVLENIIDRPRKHRSSEKVIPILGVPCGAVS   88 (363)
Q Consensus        12 ~~~~i~~p~s~l~~dl~~L~~~---~DV~~~v~~g~~~~aHk~ILaa~S~yF~~mf~~~~~e~s~~~~I~l~~v~~~~f~   88 (363)
                      ..+.+.+|++++..++.+++++   +||+|.+ +|+.|+|||.||+++|+||++||.+++.| +....|.++++++++|+
T Consensus        10 ~~~~~~~p~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e-~~~~~i~l~~~~~~~f~   87 (172)
T 3htm_A           10 TMNMVKVPECRLADELGGLWENSRFTDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEE-SKKNRVEINDVEPEVFK   87 (172)
T ss_dssp             --CCSCCCCCCHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCG-GGTTEEEECSSCHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHHhCCCCcceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccc-cCCCeEEecCCCHHHHH
Confidence            4467888999999999999884   7999999 89999999999999999999999999887 56778999999999999


Q ss_pred             HHHHhhhCCCcCccchHHHHHHHHHHHhhcCchhHHHHHHHHHHhcCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 017954           89 SFVGFLYTSRCTEEEMEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFK  168 (363)
Q Consensus        89 ~~L~flYt~~~~~~~~~~~~~~Ll~lAd~y~v~~Lk~~ce~~L~~~l~~~n~~~il~lA~~~~~~~L~~~c~~~i~~nf~  168 (363)
                      .+|+|+|||.++.+.  +++.+++.+|++|+++.|+..|+++|.+.++++|++.++.+|..|+++.|.+.|.+||.+||.
T Consensus        88 ~~l~~~Yt~~~~~~~--~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~  165 (172)
T 3htm_A           88 EMMCFIYTGKAPNLD--KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAT  165 (172)
T ss_dssp             HHHHHHHHSCCTTGG--GTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHhCCCCCCcH--HHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            999999999998775  889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcchh
Q 017954          169 AVEKTEG  175 (363)
Q Consensus       169 ~v~~~e~  175 (363)
                      ++.++++
T Consensus       166 ~v~~s~~  172 (172)
T 3htm_A          166 DVLETSG  172 (172)
T ss_dssp             -------
T ss_pred             HHHcCCC
Confidence            9987764
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon; TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens} PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3io2_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon; TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens} PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d1f81a_87 g.53.1.1 (A:) CREB-binding transcriptional adaptor 1e-19
d1l8ca_95 g.53.1.1 (A:) CREB-binding transcriptional adaptor 7e-10
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 8e-04
>d1f81a_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]} Length = 87 Back     information, alignment and structure

class: Small proteins
fold: TAZ domain
superfamily: TAZ domain
family: TAZ domain
domain: CREB-binding transcriptional adaptor protein CBP (p300)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.3 bits (198), Expect = 1e-19
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 16/97 (16%)

Query: 214 YLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVN 273
            L +   ++ L H C   C             R       +CQ ++ +++H   CK++ N
Sbjct: 7   RLSIQRCIQSLVHACQ--C-------------RNANCSLPSCQKMKRVVQHTKGCKRKTN 51

Query: 274 GGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLK 310
           GGC  CK++  L   H+  C+++  C VP C   K K
Sbjct: 52  GGCPVCKQLIALCCYHAKHCQENK-CPVPFCLNIKHK 87
>d1l8ca_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d1f81a_87 CREB-binding transcriptional adaptor protein CBP ( 99.86
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.84
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.84
d1l8ca_95 CREB-binding transcriptional adaptor protein CBP ( 99.63
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 98.17
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 98.0
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.87
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.8
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 96.75
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 96.52
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.49
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 85.87
d1l8ca_95 CREB-binding transcriptional adaptor protein CBP ( 82.62
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 81.27
>d1f81a_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: TAZ domain
superfamily: TAZ domain
family: TAZ domain
domain: CREB-binding transcriptional adaptor protein CBP (p300)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=6.2e-23  Score=156.15  Aligned_cols=81  Identities=33%  Similarity=0.843  Sum_probs=75.3

Q ss_pred             HHhhhhhHHHHHHHhhhcCCCCCCCcCCCCCCCCCCCCCcchhhhhHhhhhhcccccccCCCChhhHHHHHHHHHHHhhc
Q 017954          214 YLQLSEAMECLEHICTEGCTSVGPYEVGPTKNRGPCSKFATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMC  293 (363)
Q Consensus       214 y~~l~~~~~~l~h~~~~~~~~~~p~~~~~~~~~~~c~~~~~c~~l~~l~~H~~~c~~r~~~gc~~c~r~~~l~~~h~~~c  293 (363)
                      ..+|++.|++|.||+.  |.            .++|. +++|.+||.|++|+++|+.+..|||++|+++|+||++|++.|
T Consensus         7 ~~~iq~~l~~L~HA~~--C~------------~~~C~-~~~C~~mK~l~~H~~~C~~~~~~~c~~C~~~~~Ll~~H~k~C   71 (87)
T d1f81a_           7 RLSIQRCIQSLVHACQ--CR------------NANCS-LPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHC   71 (87)
T ss_dssp             HHHHHHHHHHHHHHHH--CC------------CTTCC-CHHHHHHHHHHHHHHHCTTHHHHTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhHcc--CC------------CCCCC-CcHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHHHc
Confidence            3677899999999998  86            45798 999999999999999999998999999999999999999999


Q ss_pred             CCCCCCcCCcchHhHHH
Q 017954          294 EQSDSCRVPLCRQFKLK  310 (363)
Q Consensus       294 ~~~~~c~vp~c~~~k~~  310 (363)
                      ++.+ |+||+|++||+|
T Consensus        72 ~~~~-CpVP~C~~~K~k   87 (87)
T d1f81a_          72 QENK-CPVPFCLNIKHK   87 (87)
T ss_dssp             CCSS-CSSTTHHHHHHC
T ss_pred             CCCC-CCCCcchhhccC
Confidence            9977 999999999985
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l8ca_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l8ca_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure