Citrus Sinensis ID: 017962

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---

MCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN

cccccccccccccEEEEEEccHHHHHHHHHccccEEEEcccHHHHHccccEEEEEEccccccccEEcccccEEEEEEEEccHHHHHHHccccccccEEEEEcccccEEcHHHHHHcccccccEEEEEcccHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccccccccEEEEEEEEEEEEEcccccEEEEEcccccccccEEEEEEcccEEEEEEEcccccccccccccEEEccccEEEEEEcccccccEEccccccEEEEEcccccEEEEEEEEEEEEcccEEEEEEEEcccccEEEEEEEEEccEEEEEcccccccccccEEEEEEcccccEEEEEEccccccccEEEEEEEEcc

cccccccccccccEEEEEcccHHHHHHHHHccccEEEEcHHHHHHHHHHcccEEEccEEccccccccccccEEEEEEccccHHHHHHHHHHHccccEEEEEEccccEccHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEcccccEEEEEccHccccccEEEEEccccEEEEEEcccccccccccccEEEccccEEEEEEccccccEEHHHcccccEEEEEEccccEEEEEEEEEEEEEccEEEEEEEEcccccEEEEEEEEcccEEEEEcccccccccccEEEEEEcccccEEEEEEcccccccccEEEEEEEcc

mcsvsnsssskpkrvWIWTESKQVMTAAVERGWNTFVFLSENqqlaidwstialldplfikegevydsgdrrvgsiievstpqelqqlqpadgqaenividlpdwqvipaenivasfqgsgktvfaISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLcslmrpgegllvGSFARGLFLVHseclesnyiasrpfrvnagpvhayvlvpggktcylselksgkevivvdqkgrqrtavvGRVKIESRPLILVEAktnsgdqtLYGIILQNAetvalvspckgtgeqekaipvtslkvgdEVLLRVQGAARHTGIEIQEFIVEN

mcsvsnsssskpkrvwIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSgkevivvdqkgrqrtavvgrvkiesrplilveaktnsgdqTLYGIILQNAETVALVSPCKgtgeqekaipvtslkvgdeVLLRVQGaarhtgieiqefiven

MCsvsnssssKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN

**************VWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV***************AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIV**

**************VWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE***********LSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKG*GEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN

*************RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN

**********KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		363	2.2.26 [Sep-21-2011]
Q2NI00		359	3-dehydroquinate synthase	yes	no	0.931	0.941	0.390	8e-65
O26680		374	3-dehydroquinate synthase	yes	no	0.909	0.882	0.396	7e-64
Q58646		361	3-dehydroquinate synthase	yes	no	0.713	0.717	0.470	2e-63
A4G0J1		361	3-dehydroquinate synthase	yes	no	0.699	0.703	0.475	3e-63
A9A8T5		361	3-dehydroquinate synthase	yes	no	0.699	0.703	0.467	2e-62
Q6M1B0		361	3-dehydroquinate synthase	yes	no	0.699	0.703	0.464	9e-62
A6VHZ4		361	3-dehydroquinate synthase	yes	no	0.699	0.703	0.460	1e-61
A0B6K6		362	3-dehydroquinate synthase	yes	no	0.911	0.914	0.405	1e-61
A6UW69		362	3-dehydroquinate synthase	yes	no	0.702	0.704	0.456	5e-61
Q12UJ7		379	3-dehydroquinate synthase	yes	no	0.672	0.643	0.503	1e-60

>sp\|Q2NI00\|DHQS_METST 3-dehydroquinate synthase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_0090 PE=3 SV=1	Back alignment and function desciption

 Score =  247 bits (631), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 213/369 (57%), Gaps = 31/369 (8%)

Query: 13  KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLA-------------IDWSTIAL 54
           K  WI     W + K+ +  ++E G++  + L   + +               D + + L
Sbjct: 2   KFAWIRPNGTWNDRKEAIVDSLESGFDHIMDLDNAETIKKLGSVTIISDKEDSDITLLGL 61

Query: 55  LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIV 114
            + + + + +      + V + +E++   +   +      A+ +++   +W+VIP ENI+
Sbjct: 62  NNKITMADIKKAQESGKEVAAYVEINNKDDELLVSKLGTVADYVILKGKNWKVIPLENII 121

Query: 115 ASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNL 174
           AS Q     +        EA++ LE +E G  G++L   D   +  L    +  ++ S  
Sbjct: 122 ASLQNRTSKIIVDVPNYEEAKLALETMEHGSDGVLLSSNDGNEIRKLGALIEKVSKES-- 179

Query: 175 LSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRP 234
             L  ATVT+V+  G+GDRVCVD CS+M  G+G+LVGSFA GLFLVHSE LES Y+ASRP
Sbjct: 180 YDLKAATVTKVESVGIGDRVCVDTCSMMNVGDGMLVGSFASGLFLVHSETLESEYVASRP 239

Query: 235 FRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 294
           FRVNAGPVHAYV+ P  KT YLSEL++G EV+ ++ KG   T +VGRVKIE RPL+L+EA
Sbjct: 240 FRVNAGPVHAYVMTPENKTRYLSELEAGDEVVTLNSKGEANTVIVGRVKIEKRPLLLIEA 299

Query: 295 K-TNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTG 353
           K  NS  +TL    +QNAET+ LV+      ++ + I V+ LKVGD+VL     AARH G
Sbjct: 300 KYKNSRIRTL----VQNAETIRLVN------DKGEPISVSKLKVGDKVLAYFSEAARHFG 349

Query: 354 IEIQEFIVE 362
           + I+E I+E
Sbjct: 350 MAIEEQIIE 358

Catalyzes the oxidative deamination and cyclization of 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3-dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis.
Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp\|O26680\|DHQS_METTH 3-dehydroquinate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_580 PE=3 SV=2	Back alignment and function description

>sp\|Q58646\|DHQS_METJA 3-dehydroquinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1249 PE=1 SV=1	Back alignment and function description

>sp\|A4G0J1\|DHQS_METM5 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_1678 PE=3 SV=1	Back alignment and function description

>sp\|A9A8T5\|DHQS_METM6 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_0943 PE=3 SV=1	Back alignment and function description

>sp\|Q6M1B0\|DHQS_METMP 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain S2 / LL) GN=MMP0006 PE=3 SV=1	Back alignment and function description

>sp\|A6VHZ4\|DHQS_METM7 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_1003 PE=3 SV=1	Back alignment and function description

>sp\|A0B6K6\|DHQS_METTP 3-dehydroquinate synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_0539 PE=3 SV=2	Back alignment and function description

>sp\|A6UW69\|DHQS_META3 3-dehydroquinate synthase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1164 PE=3 SV=1	Back alignment and function description

>sp\|Q12UJ7\|DHQS_METBU 3-dehydroquinate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2000 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		363
296082881		998	unnamed protein product [Vitis vinifera]	0.964	0.350	0.774	1e-162
224140959		345	predicted protein [Populus trichocarpa]	0.950	1.0	0.790	1e-161
359488897		368	PREDICTED: 3-dehydroquinate synthase-lik	0.964	0.951	0.774	1e-160
255552890		419	conserved hypothetical protein [Ricinus	0.991	0.859	0.738	1e-158
449459466		423	PREDICTED: 3-dehydroquinate synthase-lik	0.961	0.825	0.748	1e-152
356572434		442	PREDICTED: 3-dehydroquinate synthase-lik	0.994	0.816	0.740	1e-149
297818494		426	hypothetical protein ARALYDRAFT_322953 [	0.972	0.828	0.723	1e-148
79313976		444	uncharacterized protein [Arabidopsis tha	0.972	0.795	0.723	1e-148
30689333		422	uncharacterized protein [Arabidopsis tha	0.972	0.836	0.723	1e-148
11994783		434	unnamed protein product [Arabidopsis tha	0.933	0.781	0.713	1e-141

>gi\|296082881\|emb\|CBI22182.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/350 (77%), Positives = 317/350 (90%)

Query: 13  KRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRR 72
           K VWIWTESKQVMTAAVERGWNTF+FL ++++LA +WS+IAL+ PLFIKEG+++DS  R 
Sbjct: 648 KVVWIWTESKQVMTAAVERGWNTFIFLPDHRELATEWSSIALIHPLFIKEGKLFDSEGRG 707

Query: 73  VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPS 132
           V ++ +V++PQ+LQ LQP D QA+N++I+L DWQVIPAENIVA+FQGS  TVFAISK+PS
Sbjct: 708 VATVYDVTSPQQLQLLQPEDKQADNVIINLLDWQVIPAENIVAAFQGSHITVFAISKSPS 767

Query: 133 EAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGD 192
           EAQIFLEALEQGLGG+VLKVED  AVL LK+YFD RNE +N+LSL KAT+T++ ++GMGD
Sbjct: 768 EAQIFLEALEQGLGGVVLKVEDATAVLELKDYFDRRNEDNNILSLTKATITQIHISGMGD 827

Query: 193 RVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGK 252
           RVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYV +PGGK
Sbjct: 828 RVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVAIPGGK 887

Query: 253 TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAE 312
           TCYLSEL +GKEVIVVDQ G+QRTA+VGRVKIE+RPLILVEAK +S + TLY ++LQNAE
Sbjct: 888 TCYLSELVTGKEVIVVDQNGKQRTAIVGRVKIETRPLILVEAKGDSDNGTLYSVLLQNAE 947

Query: 313 TVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVE 362
           TVAL+ P +G+G Q+KAIPVTSLKVGDEVLLR+QG ARHTGIEIQEFIVE
Sbjct: 948 TVALICPSQGSGYQKKAIPVTSLKVGDEVLLRLQGGARHTGIEIQEFIVE 997

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224140959\|ref\|XP_002323844.1\| predicted protein [Populus trichocarpa] gi\|222866846\|gb\|EEF03977.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359488897\|ref\|XP_002282990.2\| PREDICTED: 3-dehydroquinate synthase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255552890\|ref\|XP_002517488.1\| conserved hypothetical protein [Ricinus communis] gi\|223543499\|gb\|EEF45030.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|449459466\|ref\|XP_004147467.1\| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] gi\|449520920\|ref\|XP_004167480.1\| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356572434\|ref\|XP_003554373.1\| PREDICTED: 3-dehydroquinate synthase-like [Glycine max]	Back alignment and taxonomy information

>gi\|297818494\|ref\|XP_002877130.1\| hypothetical protein ARALYDRAFT_322953 [Arabidopsis lyrata subsp. lyrata] gi\|297322968\|gb\|EFH53389.1\| hypothetical protein ARALYDRAFT_322953 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|79313976\|ref\|NP_001030791.1\| uncharacterized protein [Arabidopsis thaliana] gi\|222424331\|dbj\|BAH20122.1\| AT3G28760 [Arabidopsis thaliana] gi\|332643967\|gb\|AEE77488.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|30689333\|ref\|NP_189518.2\| uncharacterized protein [Arabidopsis thaliana] gi\|27754381\|gb\|AAO22639.1\| unknown protein [Arabidopsis thaliana] gi\|28973463\|gb\|AAO64056.1\| unknown protein [Arabidopsis thaliana] gi\|332643966\|gb\|AEE77487.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|11994783\|dbj\|BAB03173.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		363
TAIR\|locus:2098428		444	AT3G28760 [Arabidopsis thalian	0.972	0.795	0.723	1.1e-133

TAIR\|locus:2098428 AT3G28760 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
 Identities = 256/354 (72%), Positives = 300/354 (84%)

Query:    11 KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 70
             K K+VWIWT  K+VMT AVERGWNTF+F S+N++L+ +WS+IAL+D LFI+E +V D   
Sbjct:    91 KAKKVWIWTMCKEVMTVAVERGWNTFIFSSDNRKLSNEWSSIALMDTLFIEEKKVIDGTG 150

Query:    71 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 130
               V S+ EVSTP+EL+ L   + Q ENIV+D  DW+ IPAEN+VA+ QGS KTVFA+S T
Sbjct:   151 NVVASVFEVSTPEELRSLNIENEQIENIVLDFLDWKSIPAENLVAALQGSEKTVFAVSNT 210

Query:   131 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGM 190
             PSEA++FLEALE GLGGI+LK EDVKAVL LKEYFD RNE S+ LSL +AT+TRV + GM
Sbjct:   211 PSEAKLFLEALEHGLGGIILKSEDVKAVLDLKEYFDKRNEESDTLSLTEATITRVQMVGM 270

Query:   191 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPG 250
             GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYI SRPFRVNAGPVHAYV VPG
Sbjct:   271 GDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIESRPFRVNAGPVHAYVAVPG 330

Query:   251 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQ-TLYGIILQ 309
             GKTCYLSEL++G+EVIVVDQKG+QRTAVVGRVKIE RPLI+VEAK ++ ++ T+Y IILQ
Sbjct:   331 GKTCYLSELRTGREVIVVDQKGKQRTAVVGRVKIEKRPLIVVEAKLSTKEEETVYSIILQ 390

Query:   310 NAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN 363
             NAETVALV+P +       A+PVTSLK GD+VL+R+QG ARHTGIEIQEFIVEN
Sbjct:   391 NAETVALVTPHQVNSSGRTAVPVTSLKPGDQVLIRLQGGARHTGIEIQEFIVEN 444


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      363       355   0.00080  117 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  218 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.96u 0.17s 28.13t   Elapsed:  00:00:01
  Total cpu time:  27.96u 0.17s 28.13t   Elapsed:  00:00:01
  Start:  Fri May 10 08:12:58 2013   End:  Fri May 10 08:12:59 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8TVI1	DHQS_METKA	1, ., -, ., -, ., -	0.3649	0.9449	0.8532	yes	no
Q12UJ7	DHQS_METBU	1, ., -, ., -, ., -	0.5038	0.6721	0.6437	yes	no
C0QRE8	DHQSH_PERMH	1, ., -, ., -, ., -	0.3713	0.8787	0.9637	yes	no
Q2NI00	DHQS_METST	1, ., -, ., -, ., -	0.3902	0.9311	0.9415	yes	no
O67751	DHQSH_AQUAE	1, ., -, ., -, ., -	0.3649	0.8870	0.9728	yes	no
O26680	DHQS_METTH	1, ., -, ., -, ., -	0.3968	0.9090	0.8823	yes	no
O30010	DHQS_ARCFU	1, ., -, ., -, ., -	0.3822	0.8595	0.9659	yes	no
A7I8L5	DHQS_METB6	1, ., -, ., -, ., -	0.3802	0.8870	0.9787	yes	no
A0B6K6	DHQS_METTP	1, ., -, ., -, ., -	0.4054	0.9118	0.9143	yes	no
A2SU08	DHQS_METLZ	1, ., -, ., -, ., -	0.3739	0.9173	0.9652	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVII.999.1	hypothetical protein (345 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	EPSPS	3-phosphoshikimate 1-carboxyvinyltransferase (EC-2.5.1.19) (519 aa)	•			•	0.770
	gw1.XIV.2747.1	hypothetical protein (337 aa)	•			•	0.708
	gw1.VIII.57.1	annotation not avaliable (321 aa)	•			•	0.563
	gw1.XVI.3177.1	hypothetical protein (66 aa)	•				0.501
	PDTp	arogenate/prephenate dehydratase (EC-4.2.1.91) (302 aa)	•	•			0.480
	fgenesh4_pg.C_scaffold_70000157	hypothetical protein (223 aa)	•		•		0.465
	CS2	RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa)	•				0.460
	CS1	chorismate synthase (EC-4.2.3.5) (438 aa)	•				0.455
	gw1.2627.7.1	Predicted protein (172 aa)	•				0.452

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		363
pfam01959		347	pfam01959, DHQS, 3-dehydroquinate synthase (EC 4	1e-142
PRK02290		344	PRK02290, PRK02290, 3-dehydroquinate synthase; Pro	1e-112
COG1465		376	COG1465, COG1465, Predicted alternative 3-dehydroq	1e-97

>gnl\|CDD\|216810 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4	Back alignment and domain information

 Score =  406 bits (1046), Expect = e-142
 Identities = 160/358 (44%), Positives = 226/358 (63%), Gaps = 18/358 (5%)

Query: 13  KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWS--TIALLDPLFIKEGEV 65
           K+VW+     W E K+ +T A+E G +  +   E+ +   +    T+A      + + E 
Sbjct: 1   KKVWLKADGPWDERKERITTALESGVDAVLVDEEDVERVRELGRITVAADGTDDLPDLET 60

Query: 66  YDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVF 125
                + VG+ +E+   ++ +    A  +A+ ++++  DW +IP EN++A  QGS   V 
Sbjct: 61  LKESGKDVGAYVEILDKEDEEFAAEAAKEADYVIVEGRDWTIIPLENLIARLQGSETKVI 120

Query: 126 AISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 185
           A+ ++  EA++ LE LE+G+ G++L  +D   + A+    + ++  S  L L+ ATVT V
Sbjct: 121 AVVRSAEEAKLALETLEKGVDGVLLDSDDPNEIKAIVAVVEEKSSES--LDLVPATVTEV 178

Query: 186 DVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAY 245
           +  GMGDRVCVD CSLM  GEG+LVGS +RG+FLVHSE LES Y+ASRPFRVNAG VHAY
Sbjct: 179 EPVGMGDRVCVDTCSLMEDGEGMLVGSSSRGMFLVHSETLESPYVASRPFRVNAGAVHAY 238

Query: 246 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYG 305
           V VPGGKT YLSELK+G EV+VVD  GR R A+VGRVKIE RPL+L+EA+ +        
Sbjct: 239 VRVPGGKTRYLSELKAGDEVLVVDADGRTREAIVGRVKIERRPLLLIEAEYDG---ERIS 295

Query: 306 IILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN 363
            ILQNAET+ LV P  GT      + VT LK GD+VL+ ++  ARH G+ I+E I+E 
Sbjct: 296 TILQNAETIRLVRP-DGT-----PVSVTELKPGDKVLVYLEEGARHFGMAIEETIIEK 347

6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyzes the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides. Length = 347

>gnl\|CDD\|235025 PRK02290, PRK02290, 3-dehydroquinate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|224382 COG1465, COG1465, Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		363
PF01959		354	DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); Inte	100.0
PRK02290		344	3-dehydroquinate synthase; Provisional	100.0
COG1465		376	Predicted alternative 3-dehydroquinate synthase [A	100.0
smart00306		100	HintN Hint (Hedgehog/Intein) domain N-terminal reg	97.22
PF01079		217	Hint: Hint module; InterPro: IPR001767 This domain	97.18
cd00081		136	Hint Hedgehog/Intein domain, found in Hedgehog pro	93.71
TIGR02311		249	HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola	92.25
cd00331		217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	90.86
cd00452		190	KDPG_aldolase KDPG and KHG aldolase. This family b	89.31
TIGR03239		249	GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co	89.15
PRK10128		267	2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	89.05
PRK10558		256	alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro	87.54
PRK10558		256	alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro	86.89
PRK00278		260	trpC indole-3-glycerol-phosphate synthase; Reviewe	85.4
cd04729		219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	84.42
PF01729		169	QRPTase_C: Quinolinate phosphoribosyl transferase,	84.21
PF07591		130	PT-HINT: Pretoxin HINT domain; InterPro: IPR011451	83.54
TIGR00262		256	trpA tryptophan synthase, alpha subunit. Tryptopha	83.17
PRK11479		274	hypothetical protein; Provisional	82.97
PF14890		323	Intein_splicing: Intein splicing domain; PDB: 1MI8	82.94
PRK05826		465	pyruvate kinase; Provisional	82.76
PF03328		221	HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family	82.49
PRK05848		273	nicotinate-nucleotide pyrophosphorylase; Provision	82.07
cd06220		233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	81.76
PF00224		348	PK: Pyruvate kinase, barrel domain; InterPro: IPR0	81.12
PF02662		124	FlpD: Methyl-viologen-reducing hydrogenase, delta	80.94
PRK08345		289	cytochrome-c3 hydrogenase subunit gamma; Provision	80.9
TIGR03239		249	GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co	80.8
PTZ00300		454	pyruvate kinase; Provisional	80.03
PRK10128		267	2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	80.02

>PF01959 DHQS: 3-dehydroquinate synthase (EC 4	Back alignment and domain information

Probab=100.00  E-value=3.4e-136  Score=999.67  Aligned_cols=340  Identities=48%  Similarity=0.790  Sum_probs=324.9

Q ss_pred             cEEEE-----EeCchhHHHHHHHhCccEEEEcccchhhhhhccceeeeeeeee---cCCc------cccCCCCeeEEEEE
Q 017962           13 KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFI---KEGE------VYDSGDRRVGSIIE   78 (363)
Q Consensus        13 K~vWv-----w~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~---~~g~------~~~~~gk~v~~~~~   78 (363)
                      |++||     |+++|++||+|||||||+|+|++++.+++++|+++.++.+..-   +++.      .++..|+.++.|++
T Consensus         1 K~~Wi~~~~~w~~~k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~   80 (354)
T PF01959_consen    1 KEVWIDADGPWEERKEVVTAALESGVDGVVVDDEDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVE   80 (354)
T ss_pred             CeEEEEcCCChhhHHHHHHHHHHcCCCEEEECHhHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEE
Confidence            79999     8888999999999999999999999999999999999886332   2232      33578999999999


Q ss_pred             ecChhhhhhhccccCCCceEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 017962           79 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV  158 (363)
Q Consensus        79 v~~~e~~e~~~~~~~~~~~vvv~~~dW~iIPlEnliA~~q~~~~~l~a~v~~~~eA~~~~~~LE~G~dGVvl~~~d~~ei  158 (363)
                      |.++++++.++.+.+..+|+|++++||||||||||||+||+++++||+.++|++||+++|++||+|+|||+|+|+|++++
T Consensus        81 i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei  160 (354)
T PF01959_consen   81 ITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEI  160 (354)
T ss_pred             ECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHH
Confidence            99999999999888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee
Q 017962          159 LALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN  238 (363)
Q Consensus       159 ~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGdRVCVDtcsll~~GEGmLVGs~s~glfLVhsEt~e~~Yva~RPFRVN  238 (363)
                      ++++++++.  .++++++|++||||+|+|+||||||||||||+|+|||||||||||+|||||||||++||||++||||||
T Consensus       161 ~~~~~~~~~--~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVN  238 (354)
T PF01959_consen  161 KALVALLKE--RSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRVN  238 (354)
T ss_pred             HHHHHHHhh--ccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceEe
Confidence            999999864  266789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEec
Q 017962          239 AGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVS  318 (363)
Q Consensus       239 AGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~  318 (363)
                      |||||||+++|||||+|||||+|||+||+||++|++|+++|||||||+|||+||||++   +|+++|+||||||||||++
T Consensus       239 AGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE~RPLllIeA~~---~g~~~svilQnaetIRlv~  315 (354)
T PF01959_consen  239 AGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIERRPLLLIEAEA---DGKRISVILQNAETIRLVG  315 (354)
T ss_pred             cCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEeecceEEEEEEe---CCeEEEEEEecCcEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999999   6999999999999999999


Q ss_pred             CCCCCCCCCceeeeeecCCCCEEEEEecCCCcccceeeeeEEeeC
Q 017962          319 PCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN  363 (363)
Q Consensus       319 p~~~~~~~g~~vsVt~Lk~GD~VL~~~~~~gRHfG~~I~E~I~Ek  363 (363)
                      |+      |+|+|||+|||||+||+|++++||||||+|+|||+||
T Consensus       316 p~------G~~vsVt~Lk~GD~vL~~~~~~~RHfG~~I~E~I~Ek  354 (354)
T PF01959_consen  316 PD------GEPVSVTELKPGDEVLVYLEEAGRHFGMKIEEFIIEK  354 (354)
T ss_pred             CC------CCEeeeeecCCCCEEEEEecCCCcccceEeeeEEecC
Confidence            98      8999999999999999999999999999999999998

6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process

>PRK02290 3-dehydroquinate synthase; Provisional	Back alignment and domain information

>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region	Back alignment and domain information

>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH)	Back alignment and domain information

>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e	Back alignment and domain information

>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	Back alignment and domain information

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water	Back alignment and domain information

>cd00452 KDPG_aldolase KDPG and KHG aldolase	Back alignment and domain information

>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase	Back alignment and domain information

>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	Back alignment and domain information

>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	Back alignment and domain information

>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	Back alignment and domain information

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed	Back alignment and domain information

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate	Back alignment and domain information

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2	Back alignment and domain information

>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans	Back alignment and domain information

>TIGR00262 trpA tryptophan synthase, alpha subunit	Back alignment and domain information

>PRK11479 hypothetical protein; Provisional	Back alignment and domain information

>PF14890 Intein_splicing: Intein splicing domain; PDB: 1MI8_A 2CW7_A 2CW8_A	Back alignment and domain information

>PRK05826 pyruvate kinase; Provisional	Back alignment and domain information

>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4	Back alignment and domain information

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2	Back alignment and domain information

>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []	Back alignment and domain information

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional	Back alignment and domain information

>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase	Back alignment and domain information

>PTZ00300 pyruvate kinase; Provisional	Back alignment and domain information

>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		363
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 46/326 (14%), Positives = 95/326 (29%), Gaps = 97/326 (29%)

Query: 16  WIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGS 75
           ++ +    + T   +    T +++ +  +L   ++   +     +           R+  
Sbjct: 93  FLMS---PIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNVS----------RLQP 136

Query: 76  IIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQ 135
            +++   Q L +L+PA    +N++ID                 GSGKT  A+        
Sbjct: 137 YLKLR--QALLELRPA----KNVLID--------------GVLGSGKTWVALD------- 169

Query: 136 IFLEALEQGLGGIVLKVEDVKAVLALKEY---FDGRNEVSNLLSLMKATVTRVDVAGMGD 192
                        V     V+  +  K +       N    +L +++             
Sbjct: 170 -------------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ------------- 203

Query: 193 RVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLE-SNYIASRPFRVNAGPVHAYVLVPGG 251
                L   + P         +     +HS   E    + S+P+  N       +LV   
Sbjct: 204 ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NC------LLV--- 249

Query: 252 KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNA 311
               L  +++ K     +     +  +  R K  +  L        S D       L   
Sbjct: 250 ----LLNVQNAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPD 301

Query: 312 ETVALVSPCKGTGEQEKAIPVTSLKV 337
           E  +L+        Q+  +P   L  
Sbjct: 302 EVKSLLLKYLDCRPQD--LPREVLTT 325

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		363
1at0_A		145	17-hedgehog; developmental signaling molecule, cho	97.5
2in0_A		139	Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacter	96.49
1mi8_A		158	DNAB intein; all beta-strands, hydrolase; 2.00A {S	96.49
1am2_A		199	MXE GYRA intein; protein splicing; 2.20A {Mycobact	95.81
2imz_A		168	Endonuclease PI-MTUI; N-terminal cysteine sulfinic	94.06
4e2u_A		168	PHO RADA intein; HINT-fold, unknown function; 1.58	93.94
3qz6_A		261	HPCH/HPAI aldolase; structural genomics, PSI-biolo	91.63
2lcj_A		185	PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi	91.45
3qja_A		272	IGPS, indole-3-glycerol phosphate synthase; struct	90.33
3luf_A		259	Two-component system response regulator/ggdef doma	88.44
2v5j_A		287	2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l	88.33
1dxe_A		256	2-dehydro-3-deoxy-galactarate aldolase; class II a	86.98
2vws_A		267	YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher	86.48
3qz6_A		261	HPCH/HPAI aldolase; structural genomics, PSI-biolo	84.83
3q58_A		229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	84.27
1dxe_A		256	2-dehydro-3-deoxy-galactarate aldolase; class II a	82.49
2v82_A		212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	82.37
3bo9_A		326	Putative nitroalkan dioxygenase; TM0800, structura	81.22

>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1	Back alignment and structure

Probab=97.50  E-value=0.00038  Score=59.66  Aligned_cols=95  Identities=14%  Similarity=0.190  Sum_probs=60.6

Q ss_pred             eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEe----eeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEec
Q 017962          243 HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAV----VGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVS  318 (363)
Q Consensus       243 HaYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~----VGRvKIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~  318 (363)
                      -+-|.+++|.++-++||+.||+||..|.+|+.....    ..|-.-..++++-|+.+    +|+.+.+   =++|-=++.
T Consensus         5 ~t~V~~~~G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~----~g~~L~l---Tp~H~i~v~   77 (145)
T 1at0_A            5 ESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD----GGAVLTV---TPAHLVSVW   77 (145)
T ss_dssp             TCEEEBTTSCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET----TSCEEEE---CTTCEEEEE
T ss_pred             CCEEEeCCCCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEEC----CCCEEEE---eCCCEEEEe
Confidence            357899999999999999999999999999853322    23323234567777653    3544222   122222222


Q ss_pred             CCCCCCCCCceeeeeecCCCCEEEEEec
Q 017962          319 PCKGTGEQEKAIPVTSLKVGDEVLLRVQ  346 (363)
Q Consensus       319 p~~~~~~~g~~vsVt~Lk~GD~VL~~~~  346 (363)
                      ....  .....+.-.+||+||.|++.-.
T Consensus        78 ~~~~--~~~~~v~A~~l~~GD~v~~~~~  103 (145)
T 1at0_A           78 QPES--QKLTFVFADRIEEKNQVLVRDV  103 (145)
T ss_dssp             ETTT--TEEEEEEGGGCCTTCEEEEECT
T ss_pred             cCCC--CcEEEEEHHHCcCCCEEEEecC
Confidence            1100  0135678889999999998854

PyMOL of 1at0

>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A	Back alignment and structure

>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2	Back alignment and structure

>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2	Back alignment and structure

>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}	Back alignment and structure

>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*	Back alignment and structure

>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0	Back alignment and structure

>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}	Back alignment and structure

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*	Back alignment and structure

>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*	Back alignment and structure

>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A	Back alignment and structure

>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A	Back alignment and structure

>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A	Back alignment and structure

>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0	Back alignment and structure

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}	Back alignment and structure

>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A	Back alignment and structure

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*	Back alignment and structure

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		363
d1at0a_		145	Hedgehog {Fruit fly (Drosophila melanogaster) [Tax	97.12
d1mi8a_		158	DnaB intein {Synechocystis sp. pcc 6803 [TaxId: 11	93.03
d1dxea_		253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	90.42
d1oa8a_		128	Ataxin-1 {Human (Homo sapiens) [TaxId: 9606]}	89.62
d1dxea_		253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	88.55
d1izca_		299	Macrophomate synthase {Macrophoma commelinae [TaxI	87.7
d1am2a_		199	GyrA intein {Mycobacterium xenopi [TaxId: 1789]}	84.0
d1a3xa2		265	Pyruvate kinase, N-terminal domain {Baker's yeast	83.66
d1e0ta2		246	Pyruvate kinase, N-terminal domain {Escherichia co	83.59
d1o4ua1		170	Quinolinic acid phosphoribosyltransferase (Nicotin	80.84
d1izca_		299	Macrophomate synthase {Macrophoma commelinae [TaxI	80.37

>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

class: All beta proteins
fold: Hedgehog/intein (Hint) domain
superfamily: Hedgehog/intein (Hint) domain
family: Hedgehog C-terminal (Hog) autoprocessing domain
domain: Hedgehog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.12  E-value=0.0025  Score=50.67  Aligned_cols=94  Identities=16%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeE--EEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCC
Q 017962          244 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRV--KIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCK  321 (363)
Q Consensus       244 aYv~~pggkT~YLSEL~sG~eVLvVd~~G~~R~~~VGRv--KIE~RPLllIeAe~~~~~g~~~sviLQnAETIrLv~p~~  321 (363)
                      +-|.+|+|..+-+.+|+.||+|+..|.+|+.....+=-.  +-...+..+++-...  +|..+   --.++|-=++..++
T Consensus         6 T~V~~~dG~~k~I~dl~~GD~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~g~~l---~~T~~H~~~v~~~~   80 (145)
T d1at0a_           6 STALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD--GGAVL---TVTPAHLVSVWQPE   80 (145)
T ss_dssp             CEEEBTTSCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET--TSCEE---EECTTCEEEEEETT
T ss_pred             CEEECCCCCEeEhhhcccCCEEEEecCCCcEeeeeeEEEEEEccccceEEEEEEeC--CCCEE---EEecCceEEEEcCC
Confidence            568999999999999999999999999987544322111  111223333444443  45532   22455544443211


Q ss_pred             CCCCCCceeeeeecCCCCEEEEE
Q 017962          322 GTGEQEKAIPVTSLKVGDEVLLR  344 (363)
Q Consensus       322 ~~~~~g~~vsVt~Lk~GD~VL~~  344 (363)
                        ....+.+..-+|++||.|++.
T Consensus        81 --~~~~~~v~a~~l~~GD~l~~~  101 (145)
T d1at0a_          81 --SQKLTFVFADRIEEKNQVLVR  101 (145)
T ss_dssp             --TTEEEEEEGGGCCTTCEEEEE
T ss_pred             --CCceeEEEeeeecCCCEEEEE
Confidence              112467888899999999875

PyMOL of d1at0a_

>d1mi8a_ b.86.1.2 (A:) DnaB intein {Synechocystis sp. pcc 6803 [TaxId: 1148]}	Back information, alignment and structure

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1oa8a_ b.145.1.1 (A:) Ataxin-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}	Back information, alignment and structure

>d1am2a_ b.86.1.2 (A:) GyrA intein {Mycobacterium xenopi [TaxId: 1789]}	Back information, alignment and structure

>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}	Back information, alignment and structure