Citrus Sinensis ID: 017965

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MPPKQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRPDPTKVAVKKKKEEEKAREKELNDLFKVAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYILKSQMKALLEEESDRLPIEDEIEDQRGKLKSTTPMTTELFMQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAFEEYHREEEAESNEQKGKDESATSGPSNSSGAVADSEEILPDDDDDDELDLDELNELEASLSRTSIQICEPGIEASS
cccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccEEccccccccccccccccccEEccHHHHHHHHHcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccc
ccccccHHHHHHHccEEEcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccEEEHHHHccccccccccccccccccHHHHHHcHcHEEccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccEEEEEccccccccEEEccccccEEEccHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHccccHHHHHHcccHHHccccHHHccccccccccccccccccccccccccccccccccHHHcccEEEEcccEEEEEccccccccc
mppkqskadlakKQKVVEdktfglknknkskNVQKYVQSLKqsveprpdptkVAVKKKKEEEKAREKELNDLFKVAvtqpkvpvgvdpksILCEFfkagqcqkgfkckfshdlniqrkgekidiysdkrdgetmedWDQETLEKVVESKKmeynqnkptEIVCKYFLEAVEKKQYgwfwvcpnggkechyrhalppgyiLKSQMKALLEeesdrlpiedeiedqrgklksttpmTTELFMQWKKKKMEERNAGLAAQQAERakndrmsgreLFLSnaslfvddaeAFEEYHReeeaesneqkgkdesatsgpsnssgavadseeilpddddddeldLDELNELEASLSRtsiqicepgieass
mppkqskadlakkqkvvedktfglknknksknvqKYVQslkqsveprpdptkvavkkkkeeekarekelndlfkvavtqpkvpvgvDPKSILCEFFKAGQCQKgfkckfshdlniqrkgekidiysdkrdgetmedwDQETLEKVVEskkmeynqnkpteIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYILKSQMKALLEEEsdrlpiedeiedqrgklksttpmtTELFMQWKKKKMEERNAGLAAQQaerakndrmsGRELFLSNASLFVDDAEAFEEYHREeeaesneqkgkdesatsgpsnssgavadseeilpDDDDDDELDLDELNEleaslsrtsiqicepgieass
MPPKQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRPDPTkvavkkkkeeekarekeLNDLFKVAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYILKSQMKALLEEESDRLPIEDEIEDQRGKLKSTTPMTTELFMQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSNASLFVDDaeafeeyhreeeaesneQKGKDESATSGPSNSSGAVAdseeilpddddddeldldelneleaslsRTSIQICEPGIEASS
**********************************************************************DLFKVAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIY********************************PTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYILKS***************************************************************************SLFV**********************************************************************************
*************************************************************************************VDPKSILCEFFKAGQCQKGFKCKFS********GEKIDIYSDKRDGETMEDWDQ**********************VCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYI******************************STTPMTTELFMQW****************************ELFLSNASLFVDDAEAFEEYHREEEAESNEQKG*********************ILPDDDDDDELDLDELNELEAS*****************
*************QKVVEDKTFGLKNKNKSKNVQKYVQSLK*************************KELNDLFKVAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYILKSQMKALLEEESDRLPIEDEIEDQRGKLKSTTPMTTELFMQWKKKKM*******************MSGRELFLSNASLFVDDAEAFE********************************DSEEILPDDDDDDELDLDELNELEASLSRTSIQICEPGIEASS
****QSKA**AKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRP**TKVAVKKKKEEEKAREKELNDLFKVAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYILKSQMKALLEEESDRLPIEDEIEDQRGKLKSTTPMTTELFMQWKKKKMEERNAGLAAQQ****************SNASLFVDDAEAFEEYHR************************************DDDDDELDLDELNELEASLSRTSIQICEP******
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MPPKQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRPDPTKVAVKKKKEEEKAREKELNDLFKVAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYILKSQMKALLEEESDRLPIEDEIEDQRGKLKSTTPMTTELFMQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAFEEYHREEEAESNEQKGKDESATSGPSNSSGAVADSEEILPDDDDDDELDLDELNELEASLSRTSIQICEPGIEASS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q0JHZ2366 Zinc finger CCCH domain-c yes no 0.988 0.980 0.781 1e-149
Q9SK74371 Zinc finger CCCH domain-c yes no 1.0 0.978 0.789 1e-139
Q54DA5373 Zinc finger CCCH domain-c yes no 0.787 0.766 0.463 2e-61
Q12000345 Translation machinery-ass yes no 0.760 0.8 0.435 2e-57
Q93618374 Zinc finger CCCH domain-c yes no 0.909 0.882 0.423 1e-56
A8WMM4374 Zinc finger CCCH domain-c N/A no 0.917 0.890 0.423 2e-56
Q803J8433 Zinc finger CCCH domain-c yes no 0.707 0.593 0.468 7e-56
Q8WU90426 Zinc finger CCCH domain-c yes no 0.862 0.734 0.429 2e-55
Q6U6G5426 Zinc finger CCCH domain-c yes no 0.705 0.600 0.470 3e-55
Q3TIV5426 Zinc finger CCCH domain-c yes no 0.705 0.600 0.470 3e-55
>sp|Q0JHZ2|C3H11_ORYSJ Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2 Back     alignment and function desciption
 Score =  528 bits (1361), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 289/370 (78%), Positives = 328/370 (88%), Gaps = 11/370 (2%)

Query: 1   MPPKQ---SKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRPDPTKVAVKK 57
           MPPK+   SKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSL Q+V+P+PDPTK A KK
Sbjct: 1   MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKK 60

Query: 58  KKEEEKAREKELNDLFKVAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQR 117
           KKEEEKAREKELNDLFKVAV+QPKVPVGVDPKSI+CEFFK GQCQKGFKCKFSHDLN+QR
Sbjct: 61  KKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQR 120

Query: 118 KGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFLEAVEKKQYGW 177
           KGEKIDIY+DKRD ETMEDWDQETLEKVV SK  EY QNKPT+IVCKYFL+AVEKKQYGW
Sbjct: 121 KGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNKPTDIVCKYFLDAVEKKQYGW 180

Query: 178 FWVCPNGGKECHYRHALPPGYILKSQMKALLEEESDRLPIEDEIEDQRGKLKSTTPMTTE 237
           FWVCPNGGK+CHYRHALPPGY+LKSQMKALLEEES+++ IEDEIEDQR K+K+TTPMTT+
Sbjct: 181 FWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEESEKIAIEDEIEDQRKKVKTTTPMTTD 240

Query: 238 LFMQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAFEEYHREEEAE 297
           LFM+WK+KK EER AGLAA +AERAKNDRMSGRELF++++S+FVDDAEA++ Y R+EE+E
Sbjct: 241 LFMEWKRKKAEEREAGLAALRAERAKNDRMSGRELFMADSSVFVDDAEAYDVYERQEESE 300

Query: 298 SNEQ---KGKDESATSGPSNSSGAVADSEE-ILPDDDDDDELDLDELNELEASLSRTSIQ 353
           +NE+   K +DE    GPS+S+    + EE    D + DD+LD+DELNELEASLSRTSIQ
Sbjct: 301 ANEEPSNKNQDE----GPSSSTSNGKEVEESDDEDINIDDDLDIDELNELEASLSRTSIQ 356

Query: 354 ICEPGIEASS 363
           I EPG   SS
Sbjct: 357 IREPGEGTSS 366

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9SK74|C3H21_ARATH Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=4 SV=1 Back     alignment and function description
>sp|Q54DA5|ZC3HF_DICDI Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1 Back     alignment and function description
>sp|Q12000|TMA46_YEAST Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMA46 PE=1 SV=2 Back     alignment and function description
>sp|Q93618|ZC3HF_CAEEL Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3 Back     alignment and function description
>sp|A8WMM4|ZC3HF_CAEBR Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=2 Back     alignment and function description
>sp|Q803J8|ZC3HF_DANRE Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1 Back     alignment and function description
>sp|Q8WU90|ZC3HF_HUMAN Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1 Back     alignment and function description
>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1 Back     alignment and function description
>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
427199369367 zinc finger ccch domain-containing prote 1.0 0.989 0.828 1e-157
255568442363 zinc finger protein, putative [Ricinus c 0.986 0.986 0.822 1e-154
449451709362 PREDICTED: zinc finger CCCH domain-conta 0.994 0.997 0.842 1e-150
224100879363 predicted protein [Populus trichocarpa] 0.997 0.997 0.799 1e-150
297597912366 Os01g0834700 [Oryza sativa Japonica Grou 0.988 0.980 0.781 1e-147
357125750368 PREDICTED: zinc finger CCCH domain-conta 0.997 0.983 0.766 1e-146
356548206361 PREDICTED: zinc finger CCCH domain-conta 0.991 0.997 0.801 1e-142
224069316359 predicted protein [Populus trichocarpa] 0.972 0.983 0.806 1e-142
356537459362 PREDICTED: zinc finger CCCH domain-conta 0.991 0.994 0.798 1e-140
226528334365 LOC100282944 [Zea mays] gi|195626372|gb| 0.994 0.989 0.795 1e-139
>gi|427199369|gb|AFY26895.1| zinc finger ccch domain-containing protein 11 [Morella rubra] Back     alignment and taxonomy information
 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 304/367 (82%), Positives = 329/367 (89%), Gaps = 4/367 (1%)

Query: 1   MPPKQ-SKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRPDPTKVAVKKKK 59
           MPPKQ SKADLAKKQK+VEDKTFGLKNKNKSKNVQKYVQSLKQSV+P+ D  K A KKKK
Sbjct: 1   MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKLDDPKAAAKKKK 60

Query: 60  EEEKAREKELNDLFKVAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKG 119
           EEEKA+EKELNDLFK+AVTQPKVPVGVDPKSILCEFFK GQC KGFKCKFSHDLN+QRKG
Sbjct: 61  EEEKAKEKELNDLFKIAVTQPKVPVGVDPKSILCEFFKVGQCTKGFKCKFSHDLNVQRKG 120

Query: 120 EKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFLEAVEKKQYGWFW 179
           EKIDIYSDKRD +TMEDWDQETLEKVVESKK EYN NKPTEIVCKYFLEAVE KQYGWFW
Sbjct: 121 EKIDIYSDKRDEDTMEDWDQETLEKVVESKKTEYNPNKPTEIVCKYFLEAVENKQYGWFW 180

Query: 180 VCPNGGKECHYRHALPPGYILKSQMKALLEEESDRLPIEDEIEDQRGKLKSTTPMTTELF 239
           VCPNGGKECHYRHALPPGYILKSQMKALLEEE++++PIE+EIE+QR K+ +TTPMTTELF
Sbjct: 181 VCPNGGKECHYRHALPPGYILKSQMKALLEEEANKIPIEEEIENQRAKVATTTPMTTELF 240

Query: 240 MQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAFEEYHREEEAESN 299
            QWKKKKMEER AGLA  QAERAKNDRMSGRELFLS+ASLFVDDAEA+EEY REE  E+ 
Sbjct: 241 YQWKKKKMEEREAGLAVLQAERAKNDRMSGRELFLSDASLFVDDAEAYEEYQREEYTEAA 300

Query: 300 E---QKGKDESATSGPSNSSGAVADSEEILPDDDDDDELDLDELNELEASLSRTSIQICE 356
           E   +K KD +A   PS S+  VAD+EE    ++DDDELD+DELNELEASLSRTSIQI E
Sbjct: 301 EEKVEKVKDNTAAGEPSTSTNDVADAEEDPLGEEDDDELDMDELNELEASLSRTSIQISE 360

Query: 357 PGIEASS 363
           PGIEASS
Sbjct: 361 PGIEASS 367

Source: Morella rubra

Species: Morella rubra

Genus: Morella

Family: Myricaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568442|ref|XP_002525195.1| zinc finger protein, putative [Ricinus communis] gi|223535492|gb|EEF37161.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449451709|ref|XP_004143604.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Cucumis sativus] gi|449507579|ref|XP_004163072.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224100879|ref|XP_002312050.1| predicted protein [Populus trichocarpa] gi|222851870|gb|EEE89417.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297597912|ref|NP_001044722.2| Os01g0834700 [Oryza sativa Japonica Group] gi|205688775|sp|Q0JHZ2.2|C3H11_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 11; Short=OsC3H11 gi|56201934|dbj|BAD73384.1| putative uncharacterized hypothalamus protein HT010 [Oryza sativa Japonica Group] gi|56202330|dbj|BAD73789.1| putative uncharacterized hypothalamus protein HT010 [Oryza sativa Japonica Group] gi|215741052|dbj|BAG97547.1| unnamed protein product [Oryza sativa Japonica Group] gi|255673848|dbj|BAF06636.2| Os01g0834700 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357125750|ref|XP_003564553.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|356548206|ref|XP_003542494.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Glycine max] Back     alignment and taxonomy information
>gi|224069316|ref|XP_002326328.1| predicted protein [Populus trichocarpa] gi|222833521|gb|EEE71998.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356537459|ref|XP_003537244.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Glycine max] Back     alignment and taxonomy information
>gi|226528334|ref|NP_001149321.1| LOC100282944 [Zea mays] gi|195626372|gb|ACG35016.1| nucleic acid binding protein [Zea mays] gi|414879832|tpg|DAA56963.1| TPA: nucleic acid binding protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2039022371 AT2G20280 [Arabidopsis thalian 0.873 0.854 0.740 8.9e-125
DICTYBASE|DDB_G0292410373 DDB_G0292410 "CCCH-type zinc f 0.776 0.756 0.473 9.2e-68
UNIPROTKB|Q5H7N8429 ZC3H15 "Zinc finger CCCH domai 0.760 0.643 0.45 3e-62
UNIPROTKB|Q1RMM1426 ZC3H15 "Zinc finger CCCH domai 0.760 0.647 0.451 7.9e-62
UNIPROTKB|Q8WU90426 ZC3H15 "Zinc finger CCCH domai 0.760 0.647 0.451 7.9e-62
UNIPROTKB|F1RYJ5426 ZC3H15 "Uncharacterized protei 0.760 0.647 0.451 7.9e-62
MGI|MGI:1919747426 Zc3h15 "zinc finger CCCH-type 0.760 0.647 0.448 7.9e-62
RGD|1359234426 Zc3h15 "zinc finger CCCH-type 0.760 0.647 0.448 7.9e-62
ZFIN|ZDB-GENE-030131-6239433 zc3h15 "zinc finger CCCH-type 0.763 0.639 0.45 3.9e-60
UNIPROTKB|F1NSE2468 ZC3H15 "Zinc finger CCCH domai 0.727 0.564 0.446 1.3e-59
TAIR|locus:2039022 AT2G20280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 237/320 (74%), Positives = 261/320 (81%)

Query:     1 MPPKQS-KADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRPDPTXXXXXXXX 59
             MPPKQ  KADLAKKQK VEDKTFGLKNKNKSKNVQKYVQSLKQSV+P+PD T        
Sbjct:     1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKK 60

Query:    60 XXXXXXXXXLNDLFKVAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKG 119
                      LN+LFKVA++QPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKG
Sbjct:    61 EEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKG 120

Query:   120 EKIDIYSDKRDGE-TMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFLEAVEKKQYGWF 178
             EKIDIYSD RD +  M++WDQETLEKVVESKK EYNQNKPT+IVCKYFL+AVEKKQYGWF
Sbjct:   121 EKIDIYSDTRDEDGDMDEWDQETLEKVVESKKNEYNQNKPTDIVCKYFLDAVEKKQYGWF 180

Query:   179 WVCPNGGKECHYRHALPPGYILKSQMKALLEEESDR-LPIEDEIEDQRGKLKSTTPMTTE 237
             W CPNGGKECHYRHALPPGY+LKSQMKALLEEES + L +EDEIE++R KL++ T MT  
Sbjct:   181 WSCPNGGKECHYRHALPPGYVLKSQMKALLEEESSKKLAVEDEIENERAKLQTATQMTPA 240

Query:   238 LFMQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSNASLFVDDXXXXXXXXXXXXXX 297
             LFM+WK+KK+ ER+AGLAA QAERAKNDRMSGRELFLSNASLFVDD              
Sbjct:   241 LFMEWKRKKIAERDAGLAASQAERAKNDRMSGRELFLSNASLFVDDAEACEEYEREREQE 300

Query:   298 XXXQKGKDESATSGPSNSSG 317
                QK K++ A +G S SSG
Sbjct:   301 ETEQKAKNKEAEAGTSKSSG 320
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
DICTYBASE|DDB_G0292410 DDB_G0292410 "CCCH-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5H7N8 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q1RMM1 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WU90 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RYJ5 ZC3H15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1919747 Zc3h15 "zinc finger CCCH-type containing 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359234 Zc3h15 "zinc finger CCCH-type containing 15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6239 zc3h15 "zinc finger CCCH-type containing 15" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSE2 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SK74C3H21_ARATHNo assigned EC number0.78971.00.9784yesno
Q93618ZC3HF_CAEELNo assigned EC number0.42350.90900.8823yesno
Q0JHZ2C3H11_ORYSJNo assigned EC number0.78100.98890.9808yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VIII0364
hypothetical protein (363 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
COG5252299 COG5252, COG5252, Uncharacterized conserved protei 2e-47
smart0035627 smart00356, ZnF_C3H1, zinc finger 1e-05
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information 
 Score =  162 bits (411), Expect = 2e-47
 Identities = 102/320 (31%), Positives = 145/320 (45%), Gaps = 41/320 (12%)

Query: 1   MPPKQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRPDPTKVAVKKKKE 60
              +  K      +K +EDKTFGLKNKN+S  VQ  ++     +E      ++  K+K  
Sbjct: 9   KQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQ----IETLNLKEQLEKKEKMR 64

Query: 61  EEKAREKELNDLFKVAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGE 120
            E+ R +           +  +  GVDPK+++C  F    C KG  CKF+H     RK E
Sbjct: 65  MEEKRREP---------EKQVIRAGVDPKTVVCALFLNKTCAKGDACKFAHGKEEARKTE 115

Query: 121 KIDIYSDKRDGETMEDWDQETLEKVVESKKMEYNQNKPTEIVCKYFLEAVEKKQYGWFWV 180
           K D+YSD RD E              E   +       T+ VCK+F+EA+E  +YGW W 
Sbjct: 116 KPDLYSDVRDKE--------------EDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWT 161

Query: 181 CPNGGKECHYRHALPPGYILKSQMKALLEEESDRLPIEDEIEDQRGKL-KSTTPMTTELF 239
           CPNG   C Y H LP GY+L              + +E+ IE +R  L +  TP+T E F
Sbjct: 162 CPNGNMRCSYIHKLPDGYVLSRDKIKD--STQVEISLEEFIELERQSLPEKLTPLTEENF 219

Query: 240 MQWKKKKMEERNAGLAAQQAERAKNDRMSGR-------ELFLSNASLFVDDAEAFEEYHR 292
            +WK      R   +  Q+ E+    ++ GR       ELF +   LF DD EA EE+  
Sbjct: 220 KEWKD----GRRLRILKQKEEKESARKVKGRATGTKGVELFETRRDLFKDDVEAGEEWDY 275

Query: 293 EEEAESNEQKGKDESATSGP 312
            E   S  +  +     + P
Sbjct: 276 TERCYSESEDEEGHDKATAP 295

Length = 299
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
KOG1763343 consensus Uncharacterized conserved protein, conta 100.0
COG5252299 Uncharacterized conserved protein, contains CCCH-t 100.0
KOG4018215 consensus Uncharacterized conserved protein, conta 98.71
KOG1040325 consensus Polyadenylation factor I complex, subuni 97.99
smart0035627 ZnF_C3H1 zinc finger. 97.99
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 97.97
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 97.18
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 96.43
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 96.2
KOG4791 667 consensus Uncharacterized conserved protein [Funct 96.04
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 95.54
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 95.19
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 95.18
smart0035627 ZnF_C3H1 zinc finger. 94.02
KOG2185486 consensus Predicted RNA-processing protein, contai 93.03
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 92.83
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 91.91
PF0139639 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc 91.18
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 90.85
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 90.72
KOG4791 667 consensus Uncharacterized conserved protein [Funct 84.24
KOG2185 486 consensus Predicted RNA-processing protein, contai 82.61
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-114  Score=826.83  Aligned_cols=330  Identities=52%  Similarity=0.868  Sum_probs=275.1

Q ss_pred             CCCCc----chhhHhhhhhhccccccccccCCccHHHHHHHHHHHhhcCCCCCh--hHHHHHHhHHHHHHHHHHHHhhhh
Q 017965            1 MPPKQ----SKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVEPRPDP--TKVAVKKKKEEEKAREKELNDLFK   74 (363)
Q Consensus         1 MPPK~----~K~~~k~k~K~ieDKTFGlKNKnksk~vQk~I~~v~~qv~~~~~~--~k~~~kkkke~ek~~~~e~~~Lfk   74 (363)
                      ||||+    +|+.++.++|+||||||||||||+|++||+||+||++||++++..  .+.++.+++.++++  .||+.||+
T Consensus         1 MPPKk~g~skka~~k~k~K~ieDKTFGLKNKk~sk~vQK~I~qv~~qvq~~~~~d~~k~~e~kkk~e~~~--~e~~~lfk   78 (343)
T KOG1763|consen    1 MPPKKQGPSKKADQKDKEKVIEDKTFGLKNKKGSKKVQKFIKQVEQQVQQNPRKDAKKRAEEKKKKEEKQ--RELNELFK   78 (343)
T ss_pred             CCCccCCCCcchhhhhhhHhhhhhhcccccccccHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHH--HHHHHhcc
Confidence            99997    789999999999999999999999999999999999999966532  23333333333333  39999999


Q ss_pred             hhhcCCCCCCCCCCCchhhhhhhcccccCCCCCccCcccchhhcchhhhcccccCCccccccccHHHHHHHHHhhhcccC
Q 017965           75 VAVTQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWDQETLEKVVESKKMEYN  154 (363)
Q Consensus        75 ~v~~q~kvp~gvDpKsv~C~fFk~G~C~KG~kCKFSHDl~~~rk~eK~dlY~D~R~~dtmd~WD~~kL~~Vv~~Khg~~~  154 (363)
                      |  .+|+||.|||||||+|+||++|+|+||++||||||+++.|+++|++||.|+|++  |  ||+++|++||++|||  +
T Consensus        79 p--~~qkv~~gvDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rde--m--WD~~kl~~vv~~K~~--k  150 (343)
T KOG1763|consen   79 P--ADQKVPKGVDPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDE--M--WDEEKLEEVVLKKHG--K  150 (343)
T ss_pred             c--cccccccCCCchHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhh--h--hhHHHHHHHHHhhcc--C
Confidence            9  568999999999999999999999999999999999999999999999999998  7  999999999999999  5


Q ss_pred             CCCChhhhhHHHHHHHHhcccCcccccCCCCCcccccccCCCcccchhhhHHhHHhhccCCCcHHHHHHHhccCCC-CCC
Q 017965          155 QNKPTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHALPPGYILKSQMKALLEEESDRLPIEDEIEDQRGKLKS-TTP  233 (363)
Q Consensus       155 ~~~~t~ivCK~FleAvE~~kYGWfW~CPnGGd~C~YrH~LPpG~VLK~~~k~~~e~~~~eisLEE~IE~ER~kL~~-gTP  233 (363)
                      +..+|+|||||||+|||+|+|||||+|||||+.|+||||||+||||+++++++  +...+||||+|||.||++|++ +||
T Consensus       151 ~k~~tdiVCKfFLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~GyVLk~dkkk~--ek~~eISlEe~IE~ER~~L~~nlT~  228 (343)
T KOG1763|consen  151 PKPTTDIVCKFFLEAVENGKYGWFWECPNGGDKCIYRHALPEGYVLKRDKKKL--EKQDEISLEELIEKERAALGPNLTP  228 (343)
T ss_pred             CCCchhHHHHHHHHHHhcCCccceeECCCCCCeeeeeecCCcchhhhhhhhhh--cccccccHHHHHHHHHHhcCCCCcc
Confidence            56789999999999999999999999999999999999999999999887773  478999999999999999998 999


Q ss_pred             cCHHHHHHhHHHHHHHHHHHHHHHHHHHh--cCCCCcchhhhhcCCCcccCchHHhhhhhhccccchhhhccccccCCCC
Q 017965          234 MTTELFMQWKKKKMEERNAGLAAQQAERA--KNDRMSGRELFLSNASLFVDDAEAFEEYHREEEAESNEQKGKDESATSG  311 (363)
Q Consensus       234 VT~EsF~~WKkkk~~Ek~~~~~~~k~era--~k~~LSGRELFe~dp~Lf~DDd~A~d~y~re~~~d~~e~~~~~~~~~~~  311 (363)
                      ||+|||++||+++++++.+.+++.++.+.  ++.-||||+||+++++||.||++++..|+++...++.++.....+++.+
T Consensus       229 ~T~e~F~~WKk~k~~er~~k~~~~~~~~k~~gk~~~sGRElF~~~~dl~~dd~~e~~d~e~~~~~ee~d~~~k~~e~d~~  308 (343)
T KOG1763|consen  229 LTEETFKAWKKRKIRERKEKLAAEKAERKKVGKSNMSGRELFESNADLVNDDDEEAGDLEYTEYSEETDEEAKVKEADAP  308 (343)
T ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHhhhhccCCCchHHHHhhchhhccCchhhccchhhhhhccchhhhhhhhhcccc
Confidence            99999999999999999887777555442  3333999999999999999997766666665555666666666666643


Q ss_pred             CCCCCCCCCCCC-CCCCCCCCCcccChhhhhH
Q 017965          312 PSNSSGAVADSE-EILPDDDDDDELDLDELNE  342 (363)
Q Consensus       312 ~s~~~~~~~~~~-~~~~~~ddd~d~d~de~~e  342 (363)
                      ..-.++.+--++ ...+++++++.+|++++++
T Consensus       309 ~~d~~~~dq~s~~~~ed~~~~~~~~di~e~~~  340 (343)
T KOG1763|consen  309 IFDGSGADQQSKGAIEDYGDGNDTFDINEDNE  340 (343)
T ss_pred             cccccCccccchhhhhhccCCCcccCcchhhh
Confidence            332222111111 1114556677788888776

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
2rhk_C72 Cleavage and polyadenylation specificity factor su 5e-07
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 9e-07
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 8e-05
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 28/198 (14%), Positives = 63/198 (31%), Gaps = 70/198 (35%)

Query: 96  FKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDKRDGETMEDWD----QETLEKVVESKKM 151
           F+ G+ Q  +K                DI S   D   ++++D    Q+  + ++  +++
Sbjct: 9   FETGEHQYQYK----------------DILSVFED-AFVDNFDCKDVQDMPKSILSKEEI 51

Query: 152 E--YNQ---------------NKPTEIVCKYFLEAVEKKQYGWFWVCPNGGKECHYRHAL 194
           +                    +K  E+V + F+E V +  Y +                 
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMV-QKFVEEVLRINYKFLM--------------- 95

Query: 195 PPGYILKSQMKALLEEESDRLPIEDEIEDQRGKLKSTTPMTTELFMQWKKKKMEERNAGL 254
                       +  E+     +     +QR +L +   +  +  +   +  ++ R    
Sbjct: 96  ----------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--- 142

Query: 255 AAQQAERAKN---DRMSG 269
           A  +   AKN   D + G
Sbjct: 143 ALLELRPAKNVLIDGVLG 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
4a9a_C142 Translation machinery-associated protein 46; DRG-D 99.65
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.51
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.49
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.21
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 98.96
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 98.88
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.83
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.52
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.35
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 97.01
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 96.24
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 95.91
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 95.52
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 95.01
2rhk_C72 Cleavage and polyadenylation specificity factor su 94.55
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 94.44
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 94.25
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 93.26
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 93.0
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 91.97
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 89.82
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 88.48
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 88.19
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 88.19
1lup_A31 GSMTX2; inhibitor cysteine knot, beta-sheet, toxin 84.23
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 81.47
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=99.65  E-value=6.4e-17  Score=141.53  Aligned_cols=65  Identities=31%  Similarity=0.496  Sum_probs=53.2

Q ss_pred             HHhhccCCCcHHHHHHHhccCCC--CCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhcC
Q 017965          208 LEEESDRLPIEDEIEDQRGKLKS--TTPMTTELFMQWKKKKMEERNAGLAAQQAERAKNDRMSGRELFLSN  276 (363)
Q Consensus       208 ~e~~~~eisLEE~IE~ER~kL~~--gTPVT~EsF~~WKkkk~~Ek~~~~~~~k~era~k~~LSGRELFe~d  276 (363)
                      +.+..++||||||||.||++|++  +||||+|||++||++++.++.+..++.+    .+.++|||+||+.+
T Consensus        10 ~~e~~~~ItlEe~iE~ER~kL~~~nlTpVT~EtF~~WKk~k~~ek~~~~~~~~----~kk~~tGRei~~~g   76 (142)
T 4a9a_C           10 SLEKQPKITLEEFIETERGKLDKSKLTPITIANFAQWKKDHVIAKINAEKKLS----SKRKPTGREIILKM   76 (142)
T ss_dssp             -CCSCCCCCHHHHHHTTGGGSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHH----TTSCCCHHHHHHHH
T ss_pred             HHhcCCcCcHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHhc
Confidence            34558999999999999999954  8999999999999999998866654332    34568999999874
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 97.08
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 96.96
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 96.87
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.62
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.46
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 94.67
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 92.96
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 92.67
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 91.74
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 91.52
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 89.17
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=6.5e-05  Score=54.75  Aligned_cols=25  Identities=32%  Similarity=0.752  Sum_probs=21.6

Q ss_pred             hhhhhhhcc-cccCCCCCccCcccch
Q 017965           91 ILCEFFKAG-QCQKGFKCKFSHDLNI  115 (363)
Q Consensus        91 v~C~fFk~G-~C~KG~kCKFSHDl~~  115 (363)
                      .+|.||--| .|-.|++|+|||++-.
T Consensus         1 FPCK~yHtg~kCy~gd~C~FSH~pLt   26 (56)
T d2cqea1           1 FPCKLYHTTGNCINGDDCMFSHDPLT   26 (56)
T ss_dssp             SBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CCcceeecCCcccCCCcccccCCccC
Confidence            379999977 9999999999998643
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure